BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAF25f04.yg.3.3
(1599 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CD205545.1|CD205545 HS1_14_B05.g1_A012 Heat-shocked seed... 961 0.0
gb|CB924760.1|CB924760 ABA1_1_G09.g1_A012 Abscisic acid-tre... 837 0.0
gb|BI074580.1|BI074580 IP1_13_G03.b1_A002 Immature pannicle... 823 0.0
gb|CD229690.1|CD229690 CCC1_18_A04.g1_A007 Callus culture/c... 458 e-127
gb|CF761156.1|CF761156 DSAF1_71_H03.b1_A011 Drought-stresse... 434 e-119
gb|BI074265.1|BI074265 IP1_13_G03.g1_A002 Immature pannicle... 396 e-108
gb|BE362112.1|BE362112 DG1_84_A07.b1_A002 Dark Grown 1 (DG1... 385 e-105
gb|CW483252.1|CW483252 fsbb001f244m21k0 Sorghum methylation... 301 1e-079
gb|BG051896.1|BG051896 RHIZ2_6_C04.g1_A003 Rhizome2 (RHIZ2)... 210 3e-052
gb|CB924654.1|CB924654 ABA1_1_G09.b1_A012 Abscisic acid-tre... 153 6e-035
gb|BF481289.1|BF481289 FM1_18_B02.g1_A003 Floral-Induced Me... 143 6e-032
gb|CW483251.1|CW483251 fsbb001f244m21f0 Sorghum methylation... 139 9e-031
gb|BF588401.1|BF588401 FM1_36_C02.g1_A003 Floral-Induced Me... 125 1e-026
gb|CF760278.1|CF760278 DSAF1_57_G02.b1_A011 Drought-stresse... 125 1e-026
gb|BM327352.1|BM327352 PIC1_12_E05.g1_A002 Pathogen-infecte... 109 8e-022
gb|BM327351.1|BM327351 PIC1_12_E04.g1_A002 Pathogen-infecte... 74 4e-011
gb|CW330970.1|CW330970 104_828_11480660_116_36022_078 Sorgh... 70 7e-010
gb|CW330971.1|CW330971 104_828_11480660_148_36021_078 Sorgh... 70 7e-010
gb|BZ329853.1|BZ329853 hv88d03.g1 WGS-SbicolorF (JM107 adap... 58 3e-006
gb|BI245645.1|BI245645 IP1_68_D01.g1_A002 Immature pannicle... 54 4e-005
>gb|CD205545.1|CD205545 HS1_14_B05.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_14_B05_A012 5', mRNA sequence
Length = 627
Score = 961 bits (485), Expect = 0.0
Identities = 589/626 (94%)
Strand = Plus / Plus
Query: 160 gagcttgtatcaagcacgattgctgaaggaggaccctttgcctcaaggacgtcatttgta 219
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 1 gagcttgtatcaagcacgattgctgaaggaggaccctttgcctcaaggacatcatttgta 60
Query: 220 aaactcttgagatctgtcaagagggaaaccctaaagttgatcgagacttttgtggacaag 279
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 61 aaactcttgagatctgtcaagagggaaaccctaaagttgatcgagacttttgtggataag 120
Query: 280 gcggaagatttgccacatgtaggaaagcagtttgtaccaccaatgatggatcctgttctt 339
|| |||||||| |||||| |||||||||||||||| ||||||||||||||||| || |||
Sbjct: 121 gcagaagatttaccacatataggaaagcagtttgttccaccaatgatggatcccgtactt 180
Query: 340 ggtgattatgctagaaatgtacccgatgcaagggagtctgaagttctgtccttgtttgca 399
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct: 181 ggtgattatgctagaaatgtacctgatgcaagggagtctgaagttctgtcgttgtttgca 240
Query: 400 acaatcattaacaagtacaaaggggaaatgcttgaggatgtgcctcgtatatttgaggct 459
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 241 acaatcattaacaagtacaaaggggaaatgcttgaggatgtacctcgtatatttgaggct 300
Query: 460 gttttccagtgcacccttgagatgattactaagaactttgaagattatcctgagcaccgc 519
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gttttccagtgcactcttgagatgattactaagaactttgaagattatcctgagcaccgc 360
Query: 520 ctcaaannnnnnnctttgcttcgtgcaattggcacccattgcttccaagcattaatccag 579
|||||| |||||||||| |||||||| || ||||||||||||||||||||||||
Sbjct: 361 ctcaaatttttttctttgcttcgcgcaattggtactcattgcttccaagcattaatccag 420
Query: 580 ctttcaagtcagcaattgaagcttgtgatcgattcaattaattgggcgttcagacataca 639
|||||||||| |||||||||||| ||||| ||||| ||||||||||| ||||||||||||
Sbjct: 421 ctttcaagtccgcaattgaagctcgtgattgattcgattaattgggcattcagacataca 480
Query: 640 gagagaaatattgcagagactggccttagcctgttgttggagatcttgaaaaaattccag 699
||||||||||||||||||||||||||||| || |||||||| || |||||||| || |||
Sbjct: 481 gagagaaatattgcagagactggccttagtctattgttggaaattttgaaaaattttcag 540
Query: 700 gcttcaggattccaaaaccaattctacaaaacctactttttgacaattgagcaagagatt 759
||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||
Sbjct: 541 gcttcaggattccaaaatcaattctacaaaacttactttttaacaattgagcaagagatt 600
Query: 760 tttgcagtcctcacagacacattcca 785
|||||||| |||||||||||||||||
Sbjct: 601 tttgcagttctcacagacacattcca 626
>gb|CB924760.1|CB924760 ABA1_1_G09.g1_A012 Abscisic acid-treated seedlings Sorghum bicolor
cDNA clone ABA1_1_G09_A012 5', mRNA sequence
Length = 638
Score = 837 bits (422), Expect = 0.0
Identities = 589/641 (91%), Gaps = 19/641 (2%)
Strand = Plus / Plus
Query: 718 caattctacaaaacctactttttgacaattgagcaagagatttttgcagtcctcacagac 777
|||||||| ||||| |||||||| |||||||||||||||||||||||||| |||||||||
Sbjct: 1 caattcta-aaaacttacttttt-acaattgagcaagagatttttgcagttctcacagac 58
Query: 778 acattccataaacctggtttcaagcttcatgtttcggtgctacaacacttgttttgtgcg 837
|||||||| ||||||||||||||||| ||||||| |||||| |||||||| ||||||| |
Sbjct: 59 acattccacaaacctggtttcaagctccatgttttggtgctgcaacacttattttgtgtg 118
Query: 838 gttgatggtctaacggagcctctatgggacgcgtcttctgtaccatatcaatatacggat 897
||||||||||||||||||||||||||||| || ||||| ||||||||||||||||| ||
Sbjct: 119 gttgatggtctaacggagcctctatgggatgcttcttcagtaccatatcaatatacagac 178
Query: 898 aatgccatgtttgttcgagattacaccataaaactcttaggaacatcatttcctaacatg 957
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 179 aatgccatgtttgttcgagattacaccataaaactcttaggaacatcattccctaacatg 238
Query: 958 actgtagctgaggtgaccaagtttgtggatggccttcttagttcaaaacttgatcttccg 1017
|| ||| | ||||||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct: 239 acagtaaccgaggtgaccaagtttgtagatggccttcttagttcaaaacatgatcttcca 298
Query: 1018 agcttcaaaaaccatattagagatttcctggtgcagtcgaaggagttctcagctcaggat 1077
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 299 agtttcaaaaaccatattagagacttcctggtgcagtcgaaggagttctcagctcaggat 358
Query: 1078 aacaaggatctatacgcggaagaggctgctgcccaaagagaaagggagcgccaacgaatg 1137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 aacaaggatctatacgcggaagaggctgctgcccaaagagaaagggagcgccaacgaatg 418
Query: 1138 cttgccattccggggctgattgcccctagcgaattgcaagacgagatggtagattcgtag 1197
||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct: 419 cttgccattccagggctcattgcccctagcgaattgcaagacgagatggtagattcatag 478
Query: 1198 tgttccttgttttgattctgctttctctaatgtagcttcctgtttgttggtctggcctcg 1257
|||| |||| | ||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct: 479 tgtttcttg--tcgattcagctttcgctaatgtagcttcctgtttgttggtctggcctcg 536
Query: 1258 ----------ggagccctcgtctttcaagtg--cgagttttcttccagggtggtga---a 1302
|||||||||| ||| |||||| ||||||||||| ||||||||||| |
Sbjct: 537 gaatgcctctggagccctcgacttccaagtgcccgagttttcttacagggtggtgaaaga 596
Query: 1303 aggtggctgctgtaattttatttttggttacctccacatga 1343
||||| |||||||||||||||||||||||||||||||||||
Sbjct: 597 aggtgcctgctgtaattttatttttggttacctccacatga 637
>gb|BI074580.1|BI074580 IP1_13_G03.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 528
Score = 823 bits (415), Expect = 0.0
Identities = 489/516 (94%)
Strand = Plus / Plus
Query: 153 gtacagcgagcttgtatcaagcacgattgctgaaggaggaccctttgcctcaaggacgtc 212
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 9 gtacagcgagcttgtatcaagcacgattgctgaaggaggaccctttgcctcaaggacatc 68
Query: 213 atttgtaaaactcttgagatctgtcaagagggaaaccctaaagttgatcgagacttttgt 272
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 atttgtaaaactcttgagatctgtcaagagggaaaccctaaagttgatcgagacttttgt 128
Query: 273 ggacaaggcggaagatttgccacatgtaggaaagcagtttgtaccaccaatgatggatcc 332
||| ||||| |||||||| |||||| |||||||||||||||| |||||||||||||||||
Sbjct: 129 ggataaggcagaagatttaccacatataggaaagcagtttgttccaccaatgatggatcc 188
Query: 333 tgttcttggtgattatgctagaaatgtacccgatgcaagggagtctgaagttctgtcctt 392
|| |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct: 189 cgtacttggtgattatgctagaaatgtacctgatgcaagggagtctgaagttctgtcgtt 248
Query: 393 gtttgcaacaatcattaacaagtacaaaggggaaatgcttgaggatgtgcctcgtatatt 452
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 249 gtttgcaacaatcattaacaagtacaaaggggaaatgcttgaggatgtacctcgtatatt 308
Query: 453 tgaggctgttttccagtgcacccttgagatgattactaagaactttgaagattatcctga 512
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 309 tgaggctgttttccagtgcactcttgagatgattactaagaactttgaagattatcctga 368
Query: 513 gcaccgcctcaaannnnnnnctttgcttcgtgcaattggcacccattgcttccaagcatt 572
||||||||||||| |||||||||| |||||||| || |||||||||||||||||
Sbjct: 369 gcaccgcctcaaatttttttctttgcttcgcgcaattggtactcattgcttccaagcatt 428
Query: 573 aatccagctttcaagtcagcaattgaagcttgtgatcgattcaattaattgggcgttcag 632
||||||||||||||||| |||||||||||| ||||| ||||| ||||||||||| |||||
Sbjct: 429 aatccagctttcaagtccgcaattgaagctcgtgattgattcgattaattgggcattcag 488
Query: 633 acatacagagagaaatattgcagagactggccttag 668
||||||||||||||||||||||||||||||||||||
Sbjct: 489 acatacagagagaaatattgcagagactggccttag 524
>gb|CD229690.1|CD229690 CCC1_18_A04.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_18_A04_A007 5', mRNA sequence
Length = 343
Score = 458 bits (231), Expect = e-127
Identities = 312/339 (92%)
Strand = Plus / Plus
Query: 591 gcaattgaagcttgtgatcgattcaattaattgggcgttcagacatacagagagaaatat 650
|||||||||||| ||||| ||||| ||||||||||| |||||||||||||||||||||||
Sbjct: 5 gcaattgaagctcgtgattgattcgattaattgggcattcagacatacagagagaaatat 64
Query: 651 tgcagagactggccttagcctgttgttggagatcttgaaaaaattccaggcttcaggatt 710
|||||||||||||||||| || |||||||| || ||||| || || ||||||||||||||
Sbjct: 65 tgcagagactggccttagtctattgttggaaattttgaagaattttcaggcttcaggatt 124
Query: 711 ccaaaaccaattctacaaaacctactttttgacaattgagcaagagatttttgcagtcct 770
|||||| |||||||||||||| |||||||| |||||||||||||||||||||||||| ||
Sbjct: 125 ccaaaatcaattctacaaaacttactttttaacaattgagcaagagatttttgcagttct 184
Query: 771 cacagacacattccataaacctggtttcaagcttcatgtttcggtgctacaacacttgtt 830
||||||||||||||| |||||||| |||||||| ||||||| |||||| |||||||| ||
Sbjct: 185 cacagacacattccacaaacctggcttcaagctccatgttttggtgctgcaacacttatt 244
Query: 831 ttgtgcggttgatggtctaacggagcctctatgggacgcgtcttctgtaccatatcaata 890
||||| |||||||||||||||||||||||||||||| || ||||| ||||||||||||||
Sbjct: 245 ttgtgtggttgatggtctaacggagcctctatgggatgcttcttcagtaccatatcaata 304
Query: 891 tacggataatgccatgtttgttcgagattacaccataaa 929
||| || ||||||||||||||||||||||||||||||||
Sbjct: 305 tacagacaatgccatgtttgttcgagattacaccataaa 343
>gb|CF761156.1|CF761156 DSAF1_71_H03.b1_A011 Drought-stressed after flowering Sorghum bicolor
cDNA clone DSAF1_71_H03_A011 5', mRNA sequence
Length = 525
Score = 434 bits (219), Expect = e-119
Identities = 362/405 (89%), Gaps = 21/405 (5%)
Strand = Plus / Plus
Query: 1083 ggatctatacgcggaagaggctgctgcccaaagagaaagggagcgccaacgaatgcttgc 1142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggatctatacgcggaagaggctgctgcccaaagagaaagggagcgccaacgaatgcttgc 60
Query: 1143 cattccggggctgattgcccctagcgaattgcaagacgagatggtagattcgtagtgttc 1202
|||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 61 cattccagggctcattgcccctagcgaattgcaagacgagatggtagattcatagtgttt 120
Query: 1203 cttgttttgattctgctttctctaatgtagcttcctgtttgttggtctggcctcg----- 1257
|||| | ||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct: 121 cttg--tcgattcagctttcgctaatgtagcttcctgtttgttggtctggcctcggaatg 178
Query: 1258 -----ggagccctcgtctttcaagtg--cgagttttcttccagggtggtga---aaggtg 1307
|||||||||| ||| |||||| ||||||||||| ||||||||||| ||||||
Sbjct: 179 cctctggagccctcgacttccaagtgcccgagttttcttacagggtggtgaaagaaggtg 238
Query: 1308 gctgctgtaattttatttttggttacctccacatgatgctgattccaagatttgtggttg 1367
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct: 239 cctgctgtaattttatttttggttacctccacatgacgctgattccaagatttgtggtag 298
Query: 1368 tagac-tgggaatggactagtcagttttgccgcaggggaggttcctggaaccgctgttgg 1426
||||| |||||| ||||||||||||||||||||| |||||| |||| || | || |||
Sbjct: 299 tagacttgggaacggactagtcagttttgccgca--ggaggtgtctgggactgttgctgg 356
Query: 1427 gtcttcagcagctgtgcttgcctggatgtgttaacagcggctctt 1471
||| |||||||||||||||| |||||||||||| |||||||||||
Sbjct: 357 gtc-tcagcagctgtgcttgactggatgtgttagcagcggctctt 400
Score = 107 bits (54), Expect = 3e-021
Identities = 77/84 (91%), Gaps = 3/84 (3%)
Strand = Plus / Plus
Query: 1471 taacattggtgcgtgtgctttgcccatggtatatcatcgtggtacagcattgtatgcttc 1530
|||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct: 419 taacattggtgcgtgtgctttgcccatgatatatc---gtggtacagcattgtatgcttc 475
Query: 1531 ttcagttgaagctcatagatggat 1554
|| |||||||| | ||||||||||
Sbjct: 476 tttagttgaagtttatagatggat 499
>gb|BI074265.1|BI074265 IP1_13_G03.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 574
Score = 396 bits (200), Expect = e-108
Identities = 343/386 (88%), Gaps = 21/386 (5%)
Strand = Plus / Plus
Query: 1102 gctgctgcccaaagagaaagggagcgccaacgaatgcttgccattccggggctgattgcc 1161
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 1 gctgctgcccaaagagaaagggagcgccaacgaatgcttgccattccagggctcattgcc 60
Query: 1162 cctagcgaattgcaagacgagatggtagattcgtagtgttccttgttttgattctgcttt 1221
|||||||||||||||||||||||||||||||| ||||||| |||| | ||||| |||||
Sbjct: 61 cctagcgaattgcaagacgagatggtagattcatagtgtttcttg--tcgattcagcttt 118
Query: 1222 ctctaatgtagcttcctgtttgttggtctggcctcg----------ggagccctcgtctt 1271
| |||||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct: 119 cgctaatgtagcttcctgtttgttggtctggcctcggaatgcctctggagccctcgactt 178
Query: 1272 tcaagtg--cgagttttcttccagggtggtga---aaggtggctgctgtaattttatttt 1326
|||||| ||||||||||| ||||||||||| |||||| ||||||||||||||||||
Sbjct: 179 ccaagtgcccgagttttcttacagggtggtgaaagaaggtgcctgctgtaattttatttt 238
Query: 1327 tggttacctccacatgatgctgattccaagatttgtggttgtagac-tgggaatggacta 1385
||||||||||||||||| ||||||||||||||||||||| |||||| |||||| ||||||
Sbjct: 239 tggttacctccacatgacgctgattccaagatttgtggtagtagacttgggaacggacta 298
Query: 1386 gtcagttttgccgcaggggaggttcctggaaccgctgttgggtcttcagcagctgtgctt 1445
||||||||||||||| |||||| |||| || | || |||||| |||||||||||||||
Sbjct: 299 gtcagttttgccgca--ggaggtgtctgggactgttgctgggtc-tcagcagctgtgctt 355
Query: 1446 gcctggatgtgttaacagcggctctt 1471
| |||||||||||| |||||||||||
Sbjct: 356 gactggatgtgttagcagcggctctt 381
Score = 107 bits (54), Expect = 3e-021
Identities = 77/84 (91%), Gaps = 3/84 (3%)
Strand = Plus / Plus
Query: 1471 taacattggtgcgtgtgctttgcccatggtatatcatcgtggtacagcattgtatgcttc 1530
|||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct: 400 taacattggtgcgtgtgctttgcccatgatatatc---gtggtacagcattgtatgcttc 456
Query: 1531 ttcagttgaagctcatagatggat 1554
|| |||||||| | ||||||||||
Sbjct: 457 tttagttgaagtttatagatggat 480
Score = 54.0 bits (27), Expect = 4e-005
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 1559 gctgataggaaccttgatatatctgtactgtactattct 1597
|||||||||||||||| |||||||||| | |||||||||
Sbjct: 511 gctgataggaaccttgttatatctgtagtttactattct 549
>gb|BE362112.1|BE362112 DG1_84_A07.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 559
Score = 385 bits (194), Expect = e-105
Identities = 221/230 (96%)
Strand = Plus / Plus
Query: 1 agcctaagtattgatatcctgaagaaccaagatgttatccgatcagttctcaacattcta 60
|||| ||| |||||||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct: 330 agccaaagcattgatatcctgaagaaccaagatgttatcagatcagttctcaacatccta 389
Query: 61 cagacaaacacaagtgttgcgagctcacttgggccacacttcttcccacagatttcacta 120
||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |||
Sbjct: 390 cagacaaacacaagtgttgcgagttcccttgggccacacttcttcccacagatttcgcta 449
Query: 121 attttcttggacatgctaacagtctacagaatgtacagcgagcttgtatcaagcacgatt 180
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 attttcttggacatgcttacagtctacagaatgtacagcgagcttgtatcaagcacgatt 509
Query: 181 gctgaaggaggaccctttgcctcaaggacgtcatttgtaaaactcttgag 230
||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 510 gctgaaggaggaccctttgcctcaaggacatcatttgtaaaactcttgag 559
>gb|CW483252.1|CW483252 fsbb001f244m21k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f244m21, DNA
sequence
Length = 728
Score = 301 bits (152), Expect = 1e-079
Identities = 179/188 (95%)
Strand = Plus / Plus
Query: 229 agatctgtcaagagggaaaccctaaagttgatcgagacttttgtggacaaggcggaagat 288
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 523 agatctgtcaagagggaaaccctaaagttgatcgagacttttgtggataaggcagaagat 582
Query: 289 ttgccacatgtaggaaagcagtttgtaccaccaatgatggatcctgttcttggtgattat 348
|| |||||| |||||||||||||||| ||||||||||||||||| || ||||||||||||
Sbjct: 583 ttaccacatataggaaagcagtttgttccaccaatgatggatcccgtacttggtgattat 642
Query: 349 gctagaaatgtacccgatgcaagggagtctgaagttctgtccttgtttgcaacaatcatt 408
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 643 gctagaaatgtacctgatgcaagggagtctgaagttctgtcgttgtttgcaacaatcatt 702
Query: 409 aacaagta 416
||||||||
Sbjct: 703 aacaagta 710
Score = 159 bits (80), Expect = 1e-036
Identities = 83/84 (98%)
Strand = Plus / Plus
Query: 147 cagaatgtacagcgagcttgtatcaagcacgattgctgaaggaggaccctttgcctcaag 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 cagaatgtacagcgagcttgtatcaagcacgattgctgaaggaggaccctttgcctcaag 262
Query: 207 gacgtcatttgtaaaactcttgag 230
||| ||||||||||||||||||||
Sbjct: 263 gacatcatttgtaaaactcttgag 286
>gb|BG051896.1|BG051896 RHIZ2_6_C04.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 233
Score = 210 bits (106), Expect = 3e-052
Identities = 200/226 (88%), Gaps = 9/226 (3%)
Strand = Plus / Plus
Query: 1252 gcctcgggagccctcgtctttcaagtgc--gagttttcttccagggtggtgaaag---gt 1306
||||| |||||||||| || ||||||| |||||||||| |||||||||||||| ||
Sbjct: 7 gcctctggagccctcgatttccaagtgcccgagttttcttacagggtggtgaaagaaggt 66
Query: 1307 ggctgctgtaattttatttttggttacctccacatgatgctgattccaagatttgtggtt 1366
| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 67 gcctgctgtaattttatttttggttacctccacatgacgctgattccaagatttgtggta 126
Query: 1367 gtagac-tgggaatggactagtcagttttgccgcaggggaggttcctggaaccgctgttg 1425
|||||| |||||| ||||||||||||||||| ||| |||||| |||| || | |||||
Sbjct: 127 gtagacttgggaacggactagtcagttttgctgca--ggaggtgtctgggactgttgttg 184
Query: 1426 ggtcttcagcagctgtgcttgcctggatgtgttaacagcggctctt 1471
|||| |||||||||||||||| |||||||||||| |||||||||||
Sbjct: 185 ggtc-tcagcagctgtgcttgactggatgtgttagcagcggctctt 229
>gb|CB924654.1|CB924654 ABA1_1_G09.b1_A012 Abscisic acid-treated seedlings Sorghum bicolor
cDNA clone ABA1_1_G09_A012 3', mRNA sequence
Length = 363
Score = 153 bits (77), Expect = 6e-035
Identities = 145/164 (88%), Gaps = 4/164 (2%)
Strand = Plus / Plus
Query: 1309 ctgctgtaattttatttttggttacctccacatgatgctgattccaagatttgtggttgt 1368
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| ||
Sbjct: 22 ctgctgtaattttatttttggttccctccacatgacgctgattccaagatttgtggtagt 81
Query: 1369 agac-tgggaatggactagtcagttttgccgcaggggaggttcctggaaccgctgttggg 1427
||| |||||| ||| ||||||||||||||||| |||||| |||| || | || ||||
Sbjct: 82 ggacttgggaacggattagtcagttttgccgca--ggaggtgtctgggactgttgctggg 139
Query: 1428 tcttcagcagctgtgcttgcctggatgtgttaacagcggctctt 1471
|| |||||||||||||||| |||||||||||| |||||| ||||
Sbjct: 140 tc-tcagcagctgtgcttgactggatgtgttagcagcggttctt 182
Score = 91.7 bits (46), Expect = 2e-016
Identities = 75/84 (89%), Gaps = 3/84 (3%)
Strand = Plus / Plus
Query: 1471 taacattggtgcgtgtgctttgcccatggtatatcatcgtggtacagcattgtatgcttc 1530
|||||||||||||||||||||||||||| ||| |||||||||||||||||||| | ||
Sbjct: 201 taacattggtgcgtgtgctttgcccatgatat---atcgtggtacagcattgtatccctc 257
Query: 1531 ttcagttgaagctcatagatggat 1554
|| |||||||| | ||||||||||
Sbjct: 258 tttagttgaagtttatagatggat 281
>gb|BF481289.1|BF481289 FM1_18_B02.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum propinquum
cDNA, mRNA sequence
Length = 597
Score = 143 bits (72), Expect = 6e-032
Identities = 186/224 (83%)
Strand = Plus / Plus
Query: 976 aagtttgtggatggccttcttagttcaaaacttgatcttccgagcttcaaaaaccatatt 1035
|||||||| ||||| ||| ||||||||||| ||||| ||| | || || ||||||||
Sbjct: 34 aagtttgttgatggactttttagttcaaaaactgatcctccaaattttaagaaccatata 93
Query: 1036 agagatttcctggtgcagtcgaaggagttctcagctcaggataacaaggatctatacgcg 1095
|| ||||| || || || |||||||||||||| || |||||||||||||||||||| ||
Sbjct: 94 agggattttcttgttcaatcgaaggagttctctgcccaggataacaaggatctatatgct 153
Query: 1096 gaagaggctgctgcccaaagagaaagggagcgccaacgaatgcttgccattccggggctg 1155
|||||||||||||| || || |||| ||| |||||||| |||||| ||||||| |||||
Sbjct: 154 gaagaggctgctgctcagagggaaaaggaacgccaacgtatgctttccattccagggctc 213
Query: 1156 attgcccctagcgaattgcaagacgagatggtagattcgtagtg 1199
|| ||||| | |||||||| || |||||||| ||||| |||||
Sbjct: 214 atcgccccgaatgaattgcaggatgagatggtggattcatagtg 257
>gb|CW483251.1|CW483251 fsbb001f244m21f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f244m21, DNA
sequence
Length = 311
Score = 139 bits (70), Expect = 9e-031
Identities = 99/111 (89%)
Strand = Plus / Minus
Query: 479 agatgattactaagaactttgaagattatcctgagcaccgcctcaaannnnnnnctttgc 538
|||||||||||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct: 129 agatgattactaagaactttgaagattatcctgaccaccgcctcaaatttttttctttgc 70
Query: 539 ttcgtgcaattggcacccattgcttccaagcattaatccagctttcaagtc 589
|||| |||||||| || |||||||||||| |||||||||||||||||||||
Sbjct: 69 ttcgcgcaattggtactcattgcttccaaccattaatccagctttcaagtc 19
Score = 103 bits (52), Expect = 5e-020
Identities = 61/64 (95%)
Strand = Plus / Minus
Query: 417 caaaggggaaatgcttgaggatgtgcctcgtatatttgaggctgttttccagtgcaccct 476
|||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||
Sbjct: 285 caaaggggaaatgcttgaggatgtccctcgtatatttgaggctgttttccagtccactct 226
Query: 477 tgag 480
||||
Sbjct: 225 tgag 222
>gb|BF588401.1|BF588401 FM1_36_C02.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum propinquum
cDNA, mRNA sequence
Length = 520
Score = 125 bits (63), Expect = 1e-026
Identities = 177/215 (82%)
Strand = Plus / Plus
Query: 985 gatggccttcttagttcaaaacttgatcttccgagcttcaaaaaccatattagagatttc 1044
||||| ||| ||||||||||| ||||| ||| | || || |||||||| || |||||
Sbjct: 7 gatggactttttagttcaaaaactgatcctccaaattttaagaaccatataagggatttt 66
Query: 1045 ctggtgcagtcgaaggagttctcagctcaggataacaaggatctatacgcggaagaggct 1104
|| || || |||||||||||||| || |||||||||||||||||||| || |||||||||
Sbjct: 67 cttgttcaatcgaaggagttctctgcccaggataacaaggatctatatgctgaagaggct 126
Query: 1105 gctgcccaaagagaaagggagcgccaacgaatgcttgccattccggggctgattgcccct 1164
||||| || || |||| ||| |||||| | |||||| ||||||| ||||| || |||||
Sbjct: 127 gctgctcagagggaaaaggaacgccaatgtatgctttccattccagggctcatcgccccg 186
Query: 1165 agcgaattgcaagacgagatggtagattcgtagtg 1199
| |||||||| || |||||||| ||||| |||||
Sbjct: 187 aatgaattgcaggatgagatggtggattcatagtg 221
>gb|CF760278.1|CF760278 DSAF1_57_G02.b1_A011 Drought-stressed after flowering Sorghum bicolor
cDNA clone DSAF1_57_G02_A011 5', mRNA sequence
Length = 469
Score = 125 bits (63), Expect = 1e-026
Identities = 119/134 (88%), Gaps = 4/134 (2%)
Strand = Plus / Plus
Query: 1339 catgatgctgattccaagatttgtggttgtagact-gggaatggactagtcagttttgcc 1397
||||| ||||||||||||||||||||| ||||||| ||||| ||||||||||||||||||
Sbjct: 1 catgacgctgattccaagatttgtggtagtagacttgggaacggactagtcagttttgcc 60
Query: 1398 gcaggggaggttcctggaaccgctgttgggtcttcagcagctgtgcttgcctggatgtgt 1457
||||| |||| |||| || | || ||||||| ||||||||||||||| ||||||||||
Sbjct: 61 gcagg--aggtgtctgggactgttgctgggtct-cagcagctgtgcttgactggatgtgt 117
Query: 1458 taacagcggctctt 1471
|| |||||||||||
Sbjct: 118 tagcagcggctctt 131
Score = 107 bits (54), Expect = 3e-021
Identities = 77/84 (91%), Gaps = 3/84 (3%)
Strand = Plus / Plus
Query: 1471 taacattggtgcgtgtgctttgcccatggtatatcatcgtggtacagcattgtatgcttc 1530
|||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct: 150 taacattggtgcgtgtgctttgcccatgatatatc---gtggtacagcattgtatgcttc 206
Query: 1531 ttcagttgaagctcatagatggat 1554
|| |||||||| | ||||||||||
Sbjct: 207 tttagttgaagtttatagatggat 230
Score = 54.0 bits (27), Expect = 4e-005
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 1559 gctgataggaaccttgatatatctgtactgtactattct 1597
|||||||||||||||| |||||||||| | |||||||||
Sbjct: 261 gctgataggaaccttgttatatctgtagtttactattct 299
>gb|BM327352.1|BM327352 PIC1_12_E05.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 484
Score = 109 bits (55), Expect = 8e-022
Identities = 112/131 (85%)
Strand = Plus / Plus
Query: 1069 gctcaggataacaaggatctatacgcggaagaggctgctgcccaaagagaaagggagcgc 1128
||||||||||||||||||||||| || |||||||||||||| || || |||| ||| |||
Sbjct: 4 gctcaggataacaaggatctatatgctgaagaggctgctgctcagagggaaaaggaacgc 63
Query: 1129 caacgaatgcttgccattccggggctgattgcccctagcgaattgcaagacgagatggta 1188
||||| |||||| ||||||| ||||| || ||||| | |||||||| || ||||||||
Sbjct: 64 caacgtatgctttccattccagggctcatcgccccgaatgaattgcaggatgagatggtg 123
Query: 1189 gattcgtagtg 1199
||||| |||||
Sbjct: 124 gattcatagtg 134
>gb|BM327351.1|BM327351 PIC1_12_E04.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 473
Score = 73.8 bits (37), Expect = 4e-011
Identities = 103/125 (82%)
Strand = Plus / Plus
Query: 1075 gataacaaggatctatacgcggaagaggctgctgcccaaagagaaagggagcgccaacga 1134
|||| |||||||||||| || |||||||||||||| || || |||| ||| |||||| |
Sbjct: 1 gatatcaaggatctatatgctgaagaggctgctgctcagagggaaaaggaacgccaaggt 60
Query: 1135 atgcttgccattccggggctgattgcccctagcgaattgcaagacgagatggtagattcg 1194
|||||| ||||| | ||||| || ||||| | |||||||| || |||||||| |||||
Sbjct: 61 atgctttccattgcagggctcatcgccccgaatgaattgcaggatgagatggtggattca 120
Query: 1195 tagtg 1199
|||||
Sbjct: 121 tagtg 125
>gb|CW330970.1|CW330970 104_828_11480660_116_36022_078 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11480660, DNA
sequence
Length = 714
Score = 69.9 bits (35), Expect = 7e-010
Identities = 59/67 (88%)
Strand = Plus / Plus
Query: 414 gtacaaaggggaaatgcttgaggatgtgcctcgtatatttgaggctgttttccagtgcac 473
||||||||| || ||||||||||| || ||||| || |||||||||||||||||||| ||
Sbjct: 344 gtacaaaggtgagatgcttgaggaagttcctcgcatctttgaggctgttttccagtgtac 403
Query: 474 ccttgag 480
||||||
Sbjct: 404 tcttgag 410
Score = 63.9 bits (32), Expect = 4e-008
Identities = 91/113 (80%)
Strand = Plus / Plus
Query: 479 agatgattactaagaactttgaagattatcctgagcaccgcctcaaannnnnnnctttgc 538
||||||| || || ||||||||||| ||||||||||| ||||| ||| | ||||
Sbjct: 504 agatgatcaccaaaaactttgaagactatcctgagcatcgccttaaattcttttccttgc 563
Query: 539 ttcgtgcaattggcacccattgcttccaagcattaatccagctttcaagtcag 591
||||||||||||| || ||||| |||||||| || || ||||| || ||||||
Sbjct: 564 ttcgtgcaattggtacacattgtttccaagcttttattcagctctctagtcag 616
>gb|CW330971.1|CW330971 104_828_11480660_148_36021_078 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11480660, DNA
sequence
Length = 715
Score = 69.9 bits (35), Expect = 7e-010
Identities = 59/67 (88%)
Strand = Plus / Minus
Query: 414 gtacaaaggggaaatgcttgaggatgtgcctcgtatatttgaggctgttttccagtgcac 473
||||||||| || ||||||||||| || ||||| || |||||||||||||||||||| ||
Sbjct: 513 gtacaaaggtgagatgcttgaggaagttcctcgcatctttgaggctgttttccagtgtac 454
Query: 474 ccttgag 480
||||||
Sbjct: 453 tcttgag 447
Score = 61.9 bits (31), Expect = 2e-007
Identities = 73/87 (83%)
Strand = Plus / Minus
Query: 588 tcagcaattgaagcttgtgatcgattcaattaattgggcgttcagacatacagagagaaa 647
||||||| | |||||||| || ||||| || | |||||| || ||||||||||||||||
Sbjct: 90 tcagcaactaaagcttgttatggattccataagttgggcatttcgacatacagagagaaa 31
Query: 648 tattgcagagactggccttagcctgtt 674
|||||| ||||| || || ||||||||
Sbjct: 30 tattgctgagaccggtctaagcctgtt 4
Score = 56.0 bits (28), Expect = 1e-005
Identities = 90/113 (79%)
Strand = Plus / Minus
Query: 479 agatgattactaagaactttgaagattatcctgagcaccgcctcaaannnnnnnctttgc 538
||||||| || || ||||||||||| ||||||||||| ||||| ||| | | ||
Sbjct: 353 agatgatcaccaaaaactttgaagactatcctgagcatcgccttaaattcttttcctcgc 294
Query: 539 ttcgtgcaattggcacccattgcttccaagcattaatccagctttcaagtcag 591
||||||||||||| || ||||| |||||||| || || ||||| || ||||||
Sbjct: 293 ttcgtgcaattggtacacattgtttccaagcttttattcagctctctagtcag 241
>gb|BZ329853.1|BZ329853 hv88d03.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone hv88d03 5', DNA sequence
Length = 295
Score = 58.0 bits (29), Expect = 3e-006
Identities = 47/53 (88%)
Strand = Plus / Minus
Query: 414 gtacaaaggggaaatgcttgaggatgtgcctcgtatatttgaggctgttttcc 466
||||||||| || ||||||||||| || ||||| || ||||||||||||||||
Sbjct: 60 gtacaaaggtgagatgcttgaggaagttcctcgcatctttgaggctgttttcc 8
>gb|BI245645.1|BI245645 IP1_68_D01.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 465
Score = 54.0 bits (27), Expect = 4e-005
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 1559 gctgataggaaccttgatatatctgtactgtactattct 1597
|||||||||||||||| |||||||||| | |||||||||
Sbjct: 55 gctgataggaaccttgttatatctgtagtttactattct 93
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 391,922
Number of Sequences: 832831
Number of extensions: 391922
Number of successful extensions: 105071
Number of sequences better than 0.5: 20
Number of HSP's better than 0.5 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 105006
Number of HSP's gapped (non-prelim): 41
length of query: 1599
length of database: 491,359,669
effective HSP length: 20
effective length of query: 1579
effective length of database: 474,703,049
effective search space: 749556114371
effective search space used: 749556114371
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)