BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= QAF1g01.yg.2.1
         (335 letters)

Database: Sorghum_nucl_with_EST.fasta 
           832,831 sequences; 491,359,669 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CF074169.1|CF074169  FE1_21_G07.g1_A002 Iron-deficient se...   121   4e-026
gb|BG054341.1|BG054341  OV2_3_A09.b1_A002 Ovary 2 (OV2) Sorg...    62   3e-008
gb|CW473573.1|CW473573  fsbb001f229a03k0 Sorghum methylation...    48   5e-004
gb|CW883674.1|CW883674  Sorghum CISP Intron:I00_X00_F_PRSC1_...    44   0.008
gb|CW884311.1|CW884311  Sorghum CISP Intron:I00_X00_F_PRSC1_...    44   0.008
gb|CL170430.1|CL170430  104_371_10813804_116_31791_124 Sorgh...    40   0.12 
gb|BG559259.1|BG559259  RHIZ2_52_F03.b1_A003 Rhizome2 (RHIZ2...    40   0.12 
>gb|CF074169.1|CF074169 FE1_21_G07.g1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
           clone FE1_21_G07_A002 5', mRNA sequence
          Length = 580

 Score =  121 bits (61), Expect = 4e-026
 Identities = 82/91 (90%)
 Strand = Plus / Minus

                                                                       
Query: 153 gcatatatatcttcgcttatattaatcactcgagacgccttnnnaatgccacctcgggtt 212
           |||||||||||||| |||||||||||||| || ||||||||   ||||||||||||||||
Sbjct: 580 gcatatatatcttcacttatattaatcacacgggacgccttgctaatgccacctcgggtt 521

                                          
Query: 213 atnnnaaatatccgatcaaaaacatcaggat 243
           ||   ||||||||||||||||||||||||||
Sbjct: 520 atgtgaaatatccgatcaaaaacatcaggat 490
>gb|BG054341.1|BG054341 OV2_3_A09.b1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA sequence
          Length = 528

 Score = 61.9 bits (31), Expect = 3e-008
 Identities = 52/59 (88%)
 Strand = Plus / Minus

                                                                      
Query: 6   tctcggctgagaacttgctcaccattgcctccagcaactttcccctcaaatagtgcaat 64
           |||||||| |||||||| |||||||| || ||||||||||| || ||||| ||||||||
Sbjct: 493 tctcggctaagaacttgttcaccatttccaccagcaacttttccttcaaagagtgcaat 435
>gb|CW473573.1|CW473573 fsbb001f229a03k0 Sorghum methylation filtered library (LibID: 104)
           Sorghum bicolor genomic clone fsbb001f229a03, DNA
           sequence
          Length = 646

 Score = 48.1 bits (24), Expect = 5e-004
 Identities = 75/92 (81%)
 Strand = Plus / Minus

                                                                       
Query: 21  tgctcaccattgcctccagcaactttcccctcaaatagtgcaatttggttcaagccaaca 80
           ||||| ||||| || | |||||||||  ||||||| || | |||||| || |  || |||
Sbjct: 625 tgctccccatttccgcaagcaactttggcctcaaagagagaaatttgattgagacctaca 566

                                           
Query: 81  tcacgccctttccccacctggatatattcatg 112
           ||||||||||||||||| ||||| || |||||
Sbjct: 565 tcacgccctttccccacttggatgtactcatg 534
>gb|CW883674.1|CW883674 Sorghum CISP Intron:I00_X00_F_PRSC1_002_SORG_BTXX BTXX Sorghum
           bicolor genomic, DNA sequence
          Length = 509

 Score = 44.1 bits (22), Expect = 0.008
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                             
Query: 63  atttggttcaagccaacatcacgccctttcccca 96
           ||||||||||  ||||||||||||||||| ||||
Sbjct: 152 atttggttcattccaacatcacgccctttgccca 119
>gb|CW884311.1|CW884311 Sorghum CISP Intron:I00_X00_F_PRSC1_002_SORG_IS18 IS18 Sorghum
           bicolor genomic, DNA sequence
          Length = 501

 Score = 44.1 bits (22), Expect = 0.008
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                             
Query: 63  atttggttcaagccaacatcacgccctttcccca 96
           ||||||||||  ||||||||||||||||| ||||
Sbjct: 144 atttggttcattccaacatcacgccctttgccca 111
>gb|CL170430.1|CL170430 104_371_10813804_116_31791_124 Sorghum methylation-filtered library
           (LibID: 104) Sorghum bicolor genomic clone 10813804, DNA
           sequence
          Length = 746

 Score = 40.1 bits (20), Expect = 0.12
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 87  cctttccccacctggatatattcatggtgtgt 118
           ||||| || ||||||||||| |||||||||||
Sbjct: 284 cctttaccaacctggatatactcatggtgtgt 253
>gb|BG559259.1|BG559259 RHIZ2_52_F03.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
           sequence
          Length = 456

 Score = 40.1 bits (20), Expect = 0.12
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 87  cctttccccacctggatatattcatggtgtgt 118
           ||||| || ||||||||||| |||||||||||
Sbjct: 184 cctttaccaacctggatatactcatggtgtgt 153
  Database: Sorghum_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:54 PM
  Number of letters in database: 491,359,669
  Number of sequences in database:  832,831
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 48,075
Number of Sequences: 832831
Number of extensions: 48075
Number of successful extensions: 12585
Number of sequences better than  0.5: 7
Number of HSP's better than  0.5 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 12573
Number of HSP's gapped (non-prelim): 12
length of query: 335
length of database: 491,359,669
effective HSP length: 19
effective length of query: 316
effective length of database: 475,535,880
effective search space: 150269338080
effective search space used: 150269338080
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)