BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAF18e02.yg.3.1
(315 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BM324384.1|BM324384 PIC1_27_F06.b1_A002 Pathogen-infecte... 470 e-131
gb|BM324288.1|BM324288 PIC1_26_E08.b1_A002 Pathogen-infecte... 371 e-101
gb|CD206409.1|CD206409 HS1_22_D02.g1_A012 Heat-shocked seed... 329 9e-089
gb|CD431032.1|CD431032 ETH1_6_D11.g1_A002 Ethylene-treated ... 127 6e-028
gb|CL696930.1|CL696930 SP__Ba0003I23.r SP__Ba Sorghum propi... 84 9e-015
gb|CL698098.2|CL698098 SP__Ba0024O08.r SP__Ba Sorghum propi... 84 9e-015
gb|CL193734.1|CL193734 104_417_10941140_114_32274_070 Sorgh... 48 5e-004
gb|CL193735.1|CL193735 104_417_10941140_116_32279_070 Sorgh... 48 5e-004
gb|CW391018.1|CW391018 fsbb001f076p05f0 Sorghum methylation... 36 1.8
gb|CW408498.1|CW408498 fsbb001f102g16f0 Sorghum methylation... 36 1.8
gb|CW031500.1|CW031500 104_260_10500848_114_30365 Sorghum m... 34 7.2
gb|CW082214.1|CW082214 104_423_10943321_116_32331_075 Sorgh... 34 7.2
gb|CW137958.1|CW137958 104_525_11119949_148_34874_023 Sorgh... 34 7.2
gb|CW164967.1|CW164967 104_573_11152259_116_36470_046 Sorgh... 34 7.2
gb|CW164968.1|CW164968 104_573_11152259_148_36475_046 Sorgh... 34 7.2
gb|CW228054.1|CW228054 104_667_11206150_116_37242_083 Sorgh... 34 7.2
gb|CW228055.1|CW228055 104_667_11206150_148_37241_083 Sorgh... 34 7.2
gb|CW258653.1|CW258653 104_724_11227995_116_35164_006 Sorgh... 34 7.2
gb|CW294578.1|CW294578 104_775_11415262_116_36233_087 Sorgh... 34 7.2
gb|CW294579.1|CW294579 104_775_11415262_148_36234_087 Sorgh... 34 7.2
gb|CW346495.1|CW346495 fsbb001f006a17f0 Sorghum methylation... 34 7.2
gb|CW357777.1|CW357777 fsbb001f024j10k0 Sorghum methylation... 34 7.2
gb|CW376446.1|CW376446 fsbb001f054f09f0 Sorghum methylation... 34 7.2
gb|CW390277.1|CW390277 fsbb001f075n22f0 Sorghum methylation... 34 7.2
gb|CW434818.1|CW434818 fsbb001f150l03k0 Sorghum methylation... 34 7.2
gb|CW447173.1|CW447173 fsbb001f180c21f0 Sorghum methylation... 34 7.2
gb|BM323422.1|BM323422 PIC1_19_B01.b1_A002 Pathogen-infecte... 34 7.2
gb|BM324143.1|BM324143 PIC1_24_F10.b1_A002 Pathogen-infecte... 34 7.2
gb|BM327804.1|BM327804 PIC1_17_G02.g1_A002 Pathogen-infecte... 34 7.2
gb|CB926997.1|CB926997 ABA1_11_F10.g1_A012 Abscisic acid-tr... 34 7.2
>gb|BM324384.1|BM324384 PIC1_27_F06.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 580
Score = 470 bits (237), Expect = e-131
Identities = 287/304 (94%)
Strand = Plus / Plus
Query: 1 tagtctccgagcaaattgttgctcctggtggatcatctcagcaatcaccacagcaacccc 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 277 tagtctccgagcaaattgttgctcctggtggatcatctcagcaatcaccacagcaacctc 336
Query: 61 atatttcatatttttccattgattcatatgcaaagctcgtggttatggttctcaagtact 120
| ||||||||||||||| |||||||||| |||||||| ||||||||||||||||||||||
Sbjct: 337 acatttcatatttttccgttgattcatacgcaaagcttgtggttatggttctcaagtact 396
Query: 121 cttcagtggagataacaccaaataaaggcagtatactttccaagattatttctgttactg 180
||||| ||||||||||||||||||||| ||||||||||||||||||| | |||||||| |
Sbjct: 397 cttcattggagataacaccaaataaagccagtatactttccaagattctatctgttacag 456
Query: 181 tgaggaccattcagaaagatgctgaggaaaagaaagcttcatttaatccccgaccatact 240
|||| |||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct: 457 tgagaaccattcagaaagatgctgaggaaaagaaagcttcatttaatcctcggccatact 516
Query: 241 tccgattgtntataaattggctctatgaccttactactactgatggccatcatgatggtt 300
| ||||||| |||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct: 517 ttcgattgtttataaattggctctatgaccttactactaccgatggccaccatgatggtt 576
Query: 301 ctaa 304
||||
Sbjct: 577 ctaa 580
>gb|BM324288.1|BM324288 PIC1_26_E08.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 515
Score = 371 bits (187), Expect = e-101
Identities = 226/239 (94%)
Strand = Plus / Plus
Query: 1 tagtctccgagcaaattgttgctcctggtggatcatctcagcaatcaccacagcaacccc 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 277 tagtctccgagcaaattgttgctcctggtggatcatctcagcaatcaccacagcaacctc 336
Query: 61 atatttcatatttttccattgattcatatgcaaagctcgtggttatggttctcaagtact 120
| ||||||||||||||| |||||||||| |||||||| ||||||||||||||||||||||
Sbjct: 337 acatttcatatttttccgttgattcatacgcaaagcttgtggttatggttctcaagtact 396
Query: 121 cttcagtggagataacaccaaataaaggcagtatactttccaagattatttctgttactg 180
||||| ||||||||||||||||||||| ||||||||||||||||||| | |||||||| |
Sbjct: 397 cttcattggagataacaccaaataaagccagtatactttccaagattctatctgttacag 456
Query: 181 tgaggaccattcagaaagatgctgaggaaaagaaagcttcatttaatccccgaccatac 239
|||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 457 tgagaaccattcagaaagatgctgaggaaaagaaagcttcatttaatcctcggccatac 515
>gb|CD206409.1|CD206409 HS1_22_D02.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_22_D02_A012 5', mRNA sequence
Length = 589
Score = 329 bits (166), Expect = 9e-089
Identities = 201/213 (94%)
Strand = Plus / Plus
Query: 99 gtggttatggttctcaagtactcttcagtggagataacaccaaataaaggcagtatactt 158
||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct: 2 gtggttatggttctcaagtactcttcattggagataacaccaaataaagccagtatactt 61
Query: 159 tccaagattatttctgttactgtgaggaccattcagaaagatgctgaggaaaagaaagct 218
||||||||| | |||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct: 62 tccaagattctatctgttacagtgagaaccattcagaaagatgctgaggaaaagaaagct 121
Query: 219 tcatttaatccccgaccatacttccgattgtntataaattggctctatgaccttactact 278
||||||||||| || |||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct: 122 tcatttaatcctcggccatactttcgattgtttataaattggctctatgaccttactact 181
Query: 279 actgatggccatcatgatggttctaattttcag 311
|| |||||||| |||||||||||||||||||||
Sbjct: 182 accgatggccaccatgatggttctaattttcag 214
>gb|CD431032.1|CD431032 ETH1_6_D11.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_6_D11_A002 5', mRNA sequence
Length = 816
Score = 127 bits (64), Expect = 6e-028
Identities = 81/87 (93%)
Strand = Plus / Plus
Query: 225 aatccccgaccatacttccgattgtntataaattggctctatgaccttactactactgat 284
||||| || |||||||| ||||||| |||||||||||||||||||||||||||||| |||
Sbjct: 1 aatcctcggccatactttcgattgtttataaattggctctatgaccttactactaccgat 60
Query: 285 ggccatcatgatggttctaattttcag 311
||||| |||||||||||||||||||||
Sbjct: 61 ggccaccatgatggttctaattttcag 87
>gb|CL696930.1|CL696930 SP__Ba0003I23.r SP__Ba Sorghum propinquum genomic clone
SP__Ba0003I23 3', DNA sequence
Length = 638
Score = 83.8 bits (42), Expect = 9e-015
Identities = 48/50 (96%)
Strand = Plus / Plus
Query: 115 agtactcttcagtggagataacaccaaataaaggcagtatactttccaag 164
||||||||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct: 537 agtactcttcattggagataacaccaaataaagccagtatactttccaag 586
Score = 34.2 bits (17), Expect = 7.2
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 100 tggttatggttctcaag 116
|||||||||||||||||
Sbjct: 1 tggttatggttctcaag 17
>gb|CL698098.2|CL698098 SP__Ba0024O08.r SP__Ba Sorghum propinquum genomic clone
SP__Ba0024O08 3', DNA sequence
Length = 662
Score = 83.8 bits (42), Expect = 9e-015
Identities = 48/50 (96%)
Strand = Plus / Plus
Query: 115 agtactcttcagtggagataacaccaaataaaggcagtatactttccaag 164
||||||||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct: 537 agtactcttcattggagataacaccaaataaagccagtatactttccaag 586
Score = 34.2 bits (17), Expect = 7.2
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 100 tggttatggttctcaag 116
|||||||||||||||||
Sbjct: 1 tggttatggttctcaag 17
>gb|CL193734.1|CL193734 104_417_10941140_114_32274_070 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10941140, DNA
sequence
Length = 727
Score = 48.1 bits (24), Expect = 5e-004
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 51 cagcaaccccatatttcatatttttccattgattcatatgcaaa 94
||||||| ||| ||||| |||||||| |||||||||||| ||||
Sbjct: 337 cagcaacaccagatttcttatttttcaattgattcatattcaaa 380
>gb|CL193735.1|CL193735 104_417_10941140_116_32279_070 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10941140, DNA
sequence
Length = 641
Score = 48.1 bits (24), Expect = 5e-004
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 51 cagcaaccccatatttcatatttttccattgattcatatgcaaa 94
||||||| ||| ||||| |||||||| |||||||||||| ||||
Sbjct: 569 cagcaacaccagatttcttatttttcaattgattcatattcaaa 526
>gb|CW391018.1|CW391018 fsbb001f076p05f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f076p05, DNA
sequence
Length = 581
Score = 36.2 bits (18), Expect = 1.8
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 64 tttcatatttttccattg 81
||||||||||||||||||
Sbjct: 445 tttcatatttttccattg 462
>gb|CW408498.1|CW408498 fsbb001f102g16f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f102g16, DNA
sequence
Length = 817
Score = 36.2 bits (18), Expect = 1.8
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 256 attggctctatgacctta 273
||||||||||||||||||
Sbjct: 799 attggctctatgacctta 816
>gb|CW031500.1|CW031500 104_260_10500848_114_30365 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10500848, DNA
sequence
Length = 796
Score = 34.2 bits (17), Expect = 7.2
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 14 aattgttgctcctggtg 30
|||||||||||||||||
Sbjct: 196 aattgttgctcctggtg 212
>gb|CW082214.1|CW082214 104_423_10943321_116_32331_075 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10943321, DNA
sequence
Length = 539
Score = 34.2 bits (17), Expect = 7.2
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 295 atggttctaattttcag 311
|||||||||||||||||
Sbjct: 14 atggttctaattttcag 30
>gb|CW137958.1|CW137958 104_525_11119949_148_34874_023 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11119949, DNA
sequence
Length = 740
Score = 34.2 bits (17), Expect = 7.2
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 66 tcatatttttccattga 82
|||||||||||||||||
Sbjct: 641 tcatatttttccattga 625
>gb|CW164967.1|CW164967 104_573_11152259_116_36470_046 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11152259, DNA
sequence
Length = 722
Score = 34.2 bits (17), Expect = 7.2
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 14 aattgttgctcctggtg 30
|||||||||||||||||
Sbjct: 202 aattgttgctcctggtg 186
>gb|CW164968.1|CW164968 104_573_11152259_148_36475_046 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11152259, DNA
sequence
Length = 642
Score = 34.2 bits (17), Expect = 7.2
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 14 aattgttgctcctggtg 30
|||||||||||||||||
Sbjct: 545 aattgttgctcctggtg 561
>gb|CW228054.1|CW228054 104_667_11206150_116_37242_083 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11206150, DNA
sequence
Length = 684
Score = 34.2 bits (17), Expect = 7.2
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 15 attgttgctcctggtgg 31
|||||||||||||||||
Sbjct: 602 attgttgctcctggtgg 586
>gb|CW228055.1|CW228055 104_667_11206150_148_37241_083 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11206150, DNA
sequence
Length = 677
Score = 34.2 bits (17), Expect = 7.2
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 15 attgttgctcctggtgg 31
|||||||||||||||||
Sbjct: 365 attgttgctcctggtgg 381
>gb|CW258653.1|CW258653 104_724_11227995_116_35164_006 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11227995, DNA
sequence
Length = 679
Score = 34.2 bits (17), Expect = 7.2
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 15 attgttgctcctggtgg 31
|||||||||||||||||
Sbjct: 127 attgttgctcctggtgg 111
>gb|CW294578.1|CW294578 104_775_11415262_116_36233_087 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11415262, DNA
sequence
Length = 700
Score = 34.2 bits (17), Expect = 7.2
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 60 catatttcatatttttc 76
|||||||||||||||||
Sbjct: 620 catatttcatatttttc 636
>gb|CW294579.1|CW294579 104_775_11415262_148_36234_087 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11415262, DNA
sequence
Length = 732
Score = 34.2 bits (17), Expect = 7.2
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 60 catatttcatatttttc 76
|||||||||||||||||
Sbjct: 258 catatttcatatttttc 242
>gb|CW346495.1|CW346495 fsbb001f006a17f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f006a17, DNA
sequence
Length = 736
Score = 34.2 bits (17), Expect = 7.2
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 15 attgttgctcctggtgg 31
|||||||||||||||||
Sbjct: 502 attgttgctcctggtgg 518
>gb|CW357777.1|CW357777 fsbb001f024j10k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f024j10, DNA
sequence
Length = 698
Score = 34.2 bits (17), Expect = 7.2
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 77 cattgattcatatgcaa 93
|||||||||||||||||
Sbjct: 116 cattgattcatatgcaa 132
>gb|CW376446.1|CW376446 fsbb001f054f09f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f054f09, DNA
sequence
Length = 665
Score = 34.2 bits (17), Expect = 7.2
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 15 attgttgctcctggtgg 31
|||||||||||||||||
Sbjct: 355 attgttgctcctggtgg 371
>gb|CW390277.1|CW390277 fsbb001f075n22f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f075n22, DNA
sequence
Length = 580
Score = 34.2 bits (17), Expect = 7.2
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 15 attgttgctcctggtgg 31
|||||||||||||||||
Sbjct: 480 attgttgctcctggtgg 464
>gb|CW434818.1|CW434818 fsbb001f150l03k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f150l03, DNA
sequence
Length = 677
Score = 34.2 bits (17), Expect = 7.2
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 275 tactactgatggccatc 291
|||||||||||||||||
Sbjct: 323 tactactgatggccatc 339
>gb|CW447173.1|CW447173 fsbb001f180c21f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f180c21, DNA
sequence
Length = 659
Score = 34.2 bits (17), Expect = 7.2
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 257 ttggctctatgacctta 273
|||||||||||||||||
Sbjct: 73 ttggctctatgacctta 57
>gb|BM323422.1|BM323422 PIC1_19_B01.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 546
Score = 34.2 bits (17), Expect = 7.2
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 184 ggaccattcagaaagat 200
|||||||||||||||||
Sbjct: 271 ggaccattcagaaagat 255
>gb|BM324143.1|BM324143 PIC1_24_F10.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 627
Score = 34.2 bits (17), Expect = 7.2
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 184 ggaccattcagaaagat 200
|||||||||||||||||
Sbjct: 484 ggaccattcagaaagat 468
>gb|BM327804.1|BM327804 PIC1_17_G02.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 594
Score = 34.2 bits (17), Expect = 7.2
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 14 aattgttgctcctggtg 30
|||||||||||||||||
Sbjct: 121 aattgttgctcctggtg 137
>gb|CB926997.1|CB926997 ABA1_11_F10.g1_A012 Abscisic acid-treated seedlings Sorghum bicolor
cDNA clone ABA1_11_F10_A012 5', mRNA sequence
Length = 601
Score = 34.2 bits (17), Expect = 7.2
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 126 gtggagataacaccaaataaa 146
|||||||||||||||| ||||
Sbjct: 86 gtggagataacaccaattaaa 106
Database: Sorghum_nucl_with_EST.fasta
Posted date: May 2, 2006 3:37 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 90,470
Number of Sequences: 832831
Number of extensions: 90470
Number of successful extensions: 24286
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 24252
Number of HSP's gapped (non-prelim): 34
length of query: 315
length of database: 491,359,669
effective HSP length: 19
effective length of query: 296
effective length of database: 475,535,880
effective search space: 140758620480
effective search space used: 140758620480
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)