BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAE8g03.yg.2.1
(360 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BZ412900.1|BZ412900 181g10_ctg5 Subclones from BAC clone... 303 6e-081
gb|CL167258.1|CL167258 104_364_10809943_114_31802_007 Sorgh... 303 6e-081
gb|CL167259.1|CL167259 104_364_10809943_116_31803_007 Sorgh... 303 6e-081
gb|CW190601.1|CW190601 104_612_11174591_148_36758_092 Sorgh... 303 6e-081
gb|CW191376.1|CW191376 104_613_11178463_116_36939_026 Sorgh... 303 6e-081
gb|CW213623.1|CW213623 104_645_11191655_116_37034_092 Sorgh... 303 6e-081
gb|CW213624.1|CW213624 104_645_11191655_148_37035_092 Sorgh... 303 6e-081
gb|BE596045.1|BE596045 PI1_51_F11.g1_A002 Pathogen induced ... 301 2e-080
gb|BG054057.1|BG054057 OV2_1_H05.g1_A002 Ovary 2 (OV2) Sorg... 301 2e-080
gb|BG464782.1|BG464782 EM1_34_B02.g1_A002 Embryo 1 (EM1) So... 285 1e-075
gb|CW349038.1|CW349038 fsbb001f009l06f0 Sorghum methylation... 182 1e-044
>gb|BZ412900.1|BZ412900 181g10_ctg5 Subclones from BAC clones mapped to Sorghum bicolor
chromosome 3 Sorghum bicolor genomic clone 181g10, DNA
sequence
Length = 697
Score = 303 bits (153), Expect = 6e-081
Identities = 201/217 (92%)
Strand = Plus / Minus
Query: 1 acgcagccaagggggtctcagacggcacgacgtcgtccttcttgtagcttcctgggctcc 60
||||||||||||||||||||| ||| |||||||||||| ||||||| ||||| | |||||
Sbjct: 470 acgcagccaagggggtctcagtcgggacgacgtcgtccctcttgtaacttcccgagctcc 411
Query: 61 tcagcagcccttccgaacctttctcggtgacaccccggacaatcacagtcttgtgtaacc 120
|||||||| |||||||||| |||||||||||||||||||| || ||||||||||||||||
Sbjct: 410 tcagcagcgcttccgaacccttctcggtgacaccccggacgatgacagtcttgtgtaacc 351
Query: 121 cagatagcatctcctcatgatcggtgtcgccatgttccccagtgatcagatacatgttcc 180
|||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 350 cagatagcatctcctctagatcggtatcgccatgttccccagtgatcagatacatgttcc 291
Query: 181 ccacatataggccccagcgcacaaaaagatacctgaa 217
||||| |||||||||||||||| ||||| ||||||||
Sbjct: 290 ccacagataggccccagcgcacgaaaaggtacctgaa 254
Score = 127 bits (64), Expect = 7e-028
Identities = 100/111 (90%), Gaps = 2/111 (1%)
Strand = Plus / Minus
Query: 250 cagaagttccacgacagcttcaagctagattatgtatgtgttcttacctgagtgcctgtg 309
||||| |||||||| |||||||||||||||| |||||| | ||||||||||||||||
Sbjct: 188 cagaaattccacgagagcttcaagctagattctgtatgacat--tacctgagtgcctgtg 131
Query: 310 accttgatgctagcagagggacaacctgaagccttgtcgagttcctgcagt 360
|||||||||||||||| |||||||||||||| ||||||| |||||||||||
Sbjct: 130 accttgatgctagcagggggacaacctgaagtcttgtcgcgttcctgcagt 80
>gb|CL167258.1|CL167258 104_364_10809943_114_31802_007 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10809943, DNA
sequence
Length = 720
Score = 303 bits (153), Expect = 6e-081
Identities = 201/217 (92%)
Strand = Plus / Plus
Query: 1 acgcagccaagggggtctcagacggcacgacgtcgtccttcttgtagcttcctgggctcc 60
||||||||||||||||||||| ||| |||||||||||| ||||||| ||||| | |||||
Sbjct: 417 acgcagccaagggggtctcagtcgggacgacgtcgtccctcttgtaacttcccgagctcc 476
Query: 61 tcagcagcccttccgaacctttctcggtgacaccccggacaatcacagtcttgtgtaacc 120
|||||||| |||||||||| |||||||||||||||||||| || ||||||||||||||||
Sbjct: 477 tcagcagcgcttccgaacccttctcggtgacaccccggacgatgacagtcttgtgtaacc 536
Query: 121 cagatagcatctcctcatgatcggtgtcgccatgttccccagtgatcagatacatgttcc 180
|||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 537 cagatagcatctcctctagatcggtatcgccatgttccccagtgatcagatacatgttcc 596
Query: 181 ccacatataggccccagcgcacaaaaagatacctgaa 217
||||| |||||||||||||||| ||||| ||||||||
Sbjct: 597 ccacagataggccccagcgcacgaaaaggtacctgaa 633
>gb|CL167259.1|CL167259 104_364_10809943_116_31803_007 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10809943, DNA
sequence
Length = 641
Score = 303 bits (153), Expect = 6e-081
Identities = 201/217 (92%)
Strand = Plus / Minus
Query: 1 acgcagccaagggggtctcagacggcacgacgtcgtccttcttgtagcttcctgggctcc 60
||||||||||||||||||||| ||| |||||||||||| ||||||| ||||| | |||||
Sbjct: 304 acgcagccaagggggtctcagtcgggacgacgtcgtccctcttgtaacttcccgagctcc 245
Query: 61 tcagcagcccttccgaacctttctcggtgacaccccggacaatcacagtcttgtgtaacc 120
|||||||| |||||||||| |||||||||||||||||||| || ||||||||||||||||
Sbjct: 244 tcagcagcgcttccgaacccttctcggtgacaccccggacgatgacagtcttgtgtaacc 185
Query: 121 cagatagcatctcctcatgatcggtgtcgccatgttccccagtgatcagatacatgttcc 180
|||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 184 cagatagcatctcctctagatcggtatcgccatgttccccagtgatcagatacatgttcc 125
Query: 181 ccacatataggccccagcgcacaaaaagatacctgaa 217
||||| |||||||||||||||| ||||| ||||||||
Sbjct: 124 ccacagataggccccagcgcacgaaaaggtacctgaa 88
>gb|CW190601.1|CW190601 104_612_11174591_148_36758_092 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11174591, DNA
sequence
Length = 625
Score = 303 bits (153), Expect = 6e-081
Identities = 201/217 (92%)
Strand = Plus / Minus
Query: 1 acgcagccaagggggtctcagacggcacgacgtcgtccttcttgtagcttcctgggctcc 60
||||||||||||||||||||| ||| |||||||||||| ||||||| ||||| | |||||
Sbjct: 370 acgcagccaagggggtctcagtcgggacgacgtcgtccctcttgtaacttcccgagctcc 311
Query: 61 tcagcagcccttccgaacctttctcggtgacaccccggacaatcacagtcttgtgtaacc 120
|||||||| |||||||||| |||||||||||||||||||| || ||||||||||||||||
Sbjct: 310 tcagcagcgcttccgaacccttctcggtgacaccccggacgatgacagtcttgtgtaacc 251
Query: 121 cagatagcatctcctcatgatcggtgtcgccatgttccccagtgatcagatacatgttcc 180
|||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 250 cagatagcatctcctctagatcggtatcgccatgttccccagtgatcagatacatgttcc 191
Query: 181 ccacatataggccccagcgcacaaaaagatacctgaa 217
||||| |||||||||||||||| ||||| ||||||||
Sbjct: 190 ccacagataggccccagcgcacgaaaaggtacctgaa 154
Score = 101 bits (51), Expect = 4e-020
Identities = 81/90 (90%), Gaps = 2/90 (2%)
Strand = Plus / Minus
Query: 250 cagaagttccacgacagcttcaagctagattatgtatgtgttcttacctgagtgcctgtg 309
||||| |||||||| |||||||||||||||| |||||| | ||||||||||||||||
Sbjct: 88 cagaaattccacgagagcttcaagctagattctgtatgacat--tacctgagtgcctgtg 31
Query: 310 accttgatgctagcagagggacaacctgaa 339
|||||||||||||||| |||||||||||||
Sbjct: 30 accttgatgctagcagggggacaacctgaa 1
>gb|CW191376.1|CW191376 104_613_11178463_116_36939_026 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11178463, DNA
sequence
Length = 692
Score = 303 bits (153), Expect = 6e-081
Identities = 201/217 (92%)
Strand = Plus / Minus
Query: 1 acgcagccaagggggtctcagacggcacgacgtcgtccttcttgtagcttcctgggctcc 60
||||||||||||||||||||| ||| |||||||||||| ||||||| ||||| | |||||
Sbjct: 285 acgcagccaagggggtctcagtcgggacgacgtcgtccctcttgtaacttcccgagctcc 226
Query: 61 tcagcagcccttccgaacctttctcggtgacaccccggacaatcacagtcttgtgtaacc 120
|||||||| |||||||||| |||||||||||||||||||| || ||||||||||||||||
Sbjct: 225 tcagcagcgcttccgaacccttctcggtgacaccccggacgatgacagtcttgtgtaacc 166
Query: 121 cagatagcatctcctcatgatcggtgtcgccatgttccccagtgatcagatacatgttcc 180
|||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 165 cagatagcatctcctctagatcggtatcgccatgttccccagtgatcagatacatgttcc 106
Query: 181 ccacatataggccccagcgcacaaaaagatacctgaa 217
||||| |||||||||||||||| ||||| ||||||||
Sbjct: 105 ccacagataggccccagcgcacgaaaaggtacctgaa 69
>gb|CW213623.1|CW213623 104_645_11191655_116_37034_092 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11191655, DNA
sequence
Length = 683
Score = 303 bits (153), Expect = 6e-081
Identities = 201/217 (92%)
Strand = Plus / Minus
Query: 1 acgcagccaagggggtctcagacggcacgacgtcgtccttcttgtagcttcctgggctcc 60
||||||||||||||||||||| ||| |||||||||||| ||||||| ||||| | |||||
Sbjct: 551 acgcagccaagggggtctcagtcgggacgacgtcgtccctcttgtaacttcccgagctcc 492
Query: 61 tcagcagcccttccgaacctttctcggtgacaccccggacaatcacagtcttgtgtaacc 120
|||||||| |||||||||| |||||||||||||||||||| || ||||||||||||||||
Sbjct: 491 tcagcagcgcttccgaacccttctcggtgacaccccggacgatgacagtcttgtgtaacc 432
Query: 121 cagatagcatctcctcatgatcggtgtcgccatgttccccagtgatcagatacatgttcc 180
|||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 431 cagatagcatctcctctagatcggtatcgccatgttccccagtgatcagatacatgttcc 372
Query: 181 ccacatataggccccagcgcacaaaaagatacctgaa 217
||||| |||||||||||||||| ||||| ||||||||
Sbjct: 371 ccacagataggccccagcgcacgaaaaggtacctgaa 335
Score = 127 bits (64), Expect = 7e-028
Identities = 100/111 (90%), Gaps = 2/111 (1%)
Strand = Plus / Minus
Query: 250 cagaagttccacgacagcttcaagctagattatgtatgtgttcttacctgagtgcctgtg 309
||||| |||||||| |||||||||||||||| |||||| | ||||||||||||||||
Sbjct: 269 cagaaattccacgagagcttcaagctagattctgtatgacat--tacctgagtgcctgtg 212
Query: 310 accttgatgctagcagagggacaacctgaagccttgtcgagttcctgcagt 360
|||||||||||||||| |||||||||||||| ||||||| |||||||||||
Sbjct: 211 accttgatgctagcagggggacaacctgaagtcttgtcgcgttcctgcagt 161
>gb|CW213624.1|CW213624 104_645_11191655_148_37035_092 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11191655, DNA
sequence
Length = 696
Score = 303 bits (153), Expect = 6e-081
Identities = 201/217 (92%)
Strand = Plus / Plus
Query: 1 acgcagccaagggggtctcagacggcacgacgtcgtccttcttgtagcttcctgggctcc 60
||||||||||||||||||||| ||| |||||||||||| ||||||| ||||| | |||||
Sbjct: 359 acgcagccaagggggtctcagtcgggacgacgtcgtccctcttgtaacttcccgagctcc 418
Query: 61 tcagcagcccttccgaacctttctcggtgacaccccggacaatcacagtcttgtgtaacc 120
|||||||| |||||||||| |||||||||||||||||||| || ||||||||||||||||
Sbjct: 419 tcagcagcgcttccgaacccttctcggtgacaccccggacgatgacagtcttgtgtaacc 478
Query: 121 cagatagcatctcctcatgatcggtgtcgccatgttccccagtgatcagatacatgttcc 180
|||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 479 cagatagcatctcctctagatcggtatcgccatgttccccagtgatcagatacatgttcc 538
Query: 181 ccacatataggccccagcgcacaaaaagatacctgaa 217
||||| |||||||||||||||| ||||| ||||||||
Sbjct: 539 ccacagataggccccagcgcacgaaaaggtacctgaa 575
Score = 52.0 bits (26), Expect = 4e-005
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 250 cagaagttccacgacagcttcaagctagattatgtatg 287
||||| |||||||| |||||||||||||||| ||||||
Sbjct: 641 cagaaattccacgagagcttcaagctagattctgtatg 678
>gb|BE596045.1|BE596045 PI1_51_F11.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 700
Score = 301 bits (152), Expect = 2e-080
Identities = 200/216 (92%)
Strand = Plus / Minus
Query: 1 acgcagccaagggggtctcagacggcacgacgtcgtccttcttgtagcttcctgggctcc 60
||||||||||||||||||||| ||| |||||||||||| ||||||| ||||| | |||||
Sbjct: 424 acgcagccaagggggtctcagtcgggacgacgtcgtccctcttgtaacttcccgagctcc 365
Query: 61 tcagcagcccttccgaacctttctcggtgacaccccggacaatcacagtcttgtgtaacc 120
|||||||| |||||||||| |||||||||||||||||||| || ||||||||||||||||
Sbjct: 364 tcagcagcgcttccgaacccttctcggtgacaccccggacgatgacagtcttgtgtaacc 305
Query: 121 cagatagcatctcctcatgatcggtgtcgccatgttccccagtgatcagatacatgttcc 180
|||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 304 cagatagcatctcctctagatcggtatcgccatgttccccagtgatcagatacatgttcc 245
Query: 181 ccacatataggccccagcgcacaaaaagatacctga 216
||||| |||||||||||||||| ||||| |||||||
Sbjct: 244 ccacagataggccccagcgcacgaaaaggtacctga 209
Score = 109 bits (55), Expect = 2e-022
Identities = 64/67 (95%)
Strand = Plus / Minus
Query: 294 tacctgagtgcctgtgaccttgatgctagcagagggacaacctgaagccttgtcgagttc 353
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||| ||||
Sbjct: 215 tacctgagtgcctgtgaccttgatgctagcagggggacaacctgaagtcttgtcgcgttc 156
Query: 354 ctgcagt 360
|||||||
Sbjct: 155 ctgcagt 149
>gb|BG054057.1|BG054057 OV2_1_H05.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA sequence
Length = 585
Score = 301 bits (152), Expect = 2e-080
Identities = 200/216 (92%)
Strand = Plus / Minus
Query: 1 acgcagccaagggggtctcagacggcacgacgtcgtccttcttgtagcttcctgggctcc 60
||||||||||||||||||||| ||| |||||||||||| ||||||| ||||| | |||||
Sbjct: 314 acgcagccaagggggtctcagtcgggacgacgtcgtccctcttgtaacttcccgagctcc 255
Query: 61 tcagcagcccttccgaacctttctcggtgacaccccggacaatcacagtcttgtgtaacc 120
|||||||| |||||||||| |||||||||||||||||||| || ||||||||||||||||
Sbjct: 254 tcagcagcgcttccgaacccttctcggtgacaccccggacgatgacagtcttgtgtaacc 195
Query: 121 cagatagcatctcctcatgatcggtgtcgccatgttccccagtgatcagatacatgttcc 180
|||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 194 cagatagcatctcctctagatcggtatcgccatgttccccagtgatcagatacatgttcc 135
Query: 181 ccacatataggccccagcgcacaaaaagatacctga 216
||||| |||||||||||||||| ||||| |||||||
Sbjct: 134 ccacagataggccccagcgcacgaaaaggtacctga 99
Score = 109 bits (55), Expect = 2e-022
Identities = 64/67 (95%)
Strand = Plus / Minus
Query: 294 tacctgagtgcctgtgaccttgatgctagcagagggacaacctgaagccttgtcgagttc 353
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||| ||||
Sbjct: 105 tacctgagtgcctgtgaccttgatgctagcagggggacaacctgaagtcttgtcgcgttc 46
Query: 354 ctgcagt 360
|||||||
Sbjct: 45 ctgcagt 39
>gb|BG464782.1|BG464782 EM1_34_B02.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 281
Score = 285 bits (144), Expect = 1e-075
Identities = 199/216 (92%), Gaps = 1/216 (0%)
Strand = Plus / Minus
Query: 1 acgcagccaagggggtctcagacggcacgacgtcgtccttcttgtagcttcctgggctcc 60
||||||||||||||||||||| ||| |||||||||||| ||||||| ||||| | |||||
Sbjct: 262 acgcagccaagggggtctcagtcgggacgacgtcgtccctcttgtaacttcccgagctcc 203
Query: 61 tcagcagcccttccgaacctttctcggtgacaccccggacaatcacagtcttgtgtaacc 120
|||||||| |||| ||||| |||||||||||||||||||| || ||||||||||||||||
Sbjct: 202 tcagcagcgcttc-gaacccttctcggtgacaccccggacgatgacagtcttgtgtaacc 144
Query: 121 cagatagcatctcctcatgatcggtgtcgccatgttccccagtgatcagatacatgttcc 180
|||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 143 cagatagcatctcctctagatcggtatcgccatgttccccagtgatcagatacatgttcc 84
Query: 181 ccacatataggccccagcgcacaaaaagatacctga 216
||||| |||||||||||||||| ||||| |||||||
Sbjct: 83 ccacagataggccccagcgcacgaaaaggtacctga 48
Score = 91.7 bits (46), Expect = 4e-017
Identities = 52/54 (96%)
Strand = Plus / Minus
Query: 294 tacctgagtgcctgtgaccttgatgctagcagagggacaacctgaagccttgtc 347
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct: 54 tacctgagtgcctgtgaccttgatgctagcagggggacaacctgaagtcttgtc 1
>gb|CW349038.1|CW349038 fsbb001f009l06f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f009l06, DNA
sequence
Length = 741
Score = 182 bits (92), Expect = 1e-044
Identities = 116/124 (93%)
Strand = Plus / Minus
Query: 94 cccggacaatcacagtcttgtgtaacccagatagcatctcctcatgatcggtgtcgccat 153
||||||| || |||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct: 741 cccggacgatgacagtcttgtgtaacccagatagcatctcctctagatcggtatcgccat 682
Query: 154 gttccccagtgatcagatacatgttccccacatataggccccagcgcacaaaaagatacc 213
|||||||||||||||||||||||||||||||| |||||||||||||||| ||||| ||||
Sbjct: 681 gttccccagtgatcagatacatgttccccacagataggccccagcgcacgaaaaggtacc 622
Query: 214 tgaa 217
||||
Sbjct: 621 tgaa 618
Score = 127 bits (64), Expect = 7e-028
Identities = 100/111 (90%), Gaps = 2/111 (1%)
Strand = Plus / Minus
Query: 250 cagaagttccacgacagcttcaagctagattatgtatgtgttcttacctgagtgcctgtg 309
||||| |||||||| |||||||||||||||| |||||| | ||||||||||||||||
Sbjct: 552 cagaaattccacgagagcttcaagctagattctgtatgacat--tacctgagtgcctgtg 495
Query: 310 accttgatgctagcagagggacaacctgaagccttgtcgagttcctgcagt 360
|||||||||||||||| |||||||||||||| ||||||| |||||||||||
Sbjct: 494 accttgatgctagcagggggacaacctgaagtcttgtcgcgttcctgcagt 444
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 71,442
Number of Sequences: 832831
Number of extensions: 71442
Number of successful extensions: 18860
Number of sequences better than 0.5: 11
Number of HSP's better than 0.5 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 18825
Number of HSP's gapped (non-prelim): 34
length of query: 360
length of database: 491,359,669
effective HSP length: 19
effective length of query: 341
effective length of database: 475,535,880
effective search space: 162157735080
effective search space used: 162157735080
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)