BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAE37h07.yg.2.1
(642 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BI643696.1|BI643696 EM1_19_F12.b1_A002 Embryo 1 (EM1) So... 589 e-166
gb|BG355549.1|BG355549 EM1_17_G07.b1_A002 Embryo 1 (EM1) So... 565 e-159
gb|CF482724.1|CF482724 POL1_8_F04.g1_A002 Pollen Sorghum bi... 521 e-146
gb|BF657000.1|BF657000 OV2_19_G06.b1_A002 Ovary 2 (OV2) Sor... 184 7e-045
gb|BZ338573.1|BZ338573 ia96c08.g1 WGS-SbicolorF (JM107 adap... 125 5e-027
gb|CL170431.1|CL170431 104_371_10813804_148_31790_124 Sorgh... 46 0.004
gb|CD219775.1|CD219775 CCC1_58_A07.g1_A007 Callus culture/c... 46 0.004
>gb|BI643696.1|BI643696 EM1_19_F12.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 631
Score = 589 bits (297), Expect = e-166
Identities = 459/533 (86%)
Strand = Plus / Minus
Query: 1 acantgccatactgaaacatgagaaatctannnctgnngattgtctcaagaatacgtcct 60
||| ||||||||||||| |||||||||||| || ||||||||||||||||||||||
Sbjct: 540 acaatgccatactgaaatatgagaaatctaaggctcaggattgtctcaagaatacgtcct 481
Query: 61 ctgaatgtctggatatgcgcctgctcctcatcccaccaagattcccaactnnnnncaccc 120
|||||||||||||||||| ||||||||||||||||||||||||||||||| | |||
Sbjct: 480 ctgaatgtctggatatgctcctgctcctcatcccaccaagattcccaactgctatcgccc 421
Query: 121 tttacaccaactccacctttataaannnaccannntgtccagtcatcaaagtcctcaaca 180
||||||||||||||||||||||||| |||| |||||||||||| ||||||||||||
Sbjct: 420 tttacaccaactccacctttataaagtaaccagtttgtccagtcatcgaagtcctcaaca 361
Query: 181 gtcttttgccactcgaaaccagaagggttgaaaatgtaaggcgcgaaaagccaggacata 240
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 360 gtcttttgccactcgaaaccagaagggttgaatatgtaaggcgcgaaaagccaggacata 301
Query: 241 acgaggaaccaactactgatagtaatcagaataaatgaagatgaaccgccttnnntgnnn 300
||||||||||||||||||||||||||||| |||||||||||||||||||| | ||
Sbjct: 300 acgaggaaccaactactgatagtaatcagtataaatgaagatgaaccgcccttcgtgtat 241
Query: 301 nnatatgcaatntnnncnatcaggaggagagcaacctcaagcgctttgacaaagtgactt 360
||||| ||| | | || |||||||||||||||||||||||||||||||||||||||
Sbjct: 240 ccatatgaaatgtaaacgatgaggaggagagcaacctcaagcgctttgacaaagtgactt 181
Query: 361 nnagaatagagcctataattttcagcaaacnttatgtgccnnacaacaaaacctctnnna 420
||||||||||||||||||||||||||| ||||||||| |||||||||||||| |
Sbjct: 180 cgagaatagagcctataattttcagcaaattttatgtgccgaacaacaaaacctcttcca 121
Query: 421 gtagcacgatactttgcancnnnatgaaggattnnnctaccannntaatnnnnnnttgtt 480
||||| |||||||||| | |||||||||| |||||| |||| |||||
Sbjct: 120 gtagctttatactttgcaccaccatgaaggattgttctaccaaagtaatgtgtccttgtt 61
Query: 481 ncaagcgaaaagnnnaaaaacaccgaacagnnctggagctgcattgtaataaa 533
||||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct: 60 ccaagcgaaaaggtgaaaaacaccgaacagaactggagctgcattgtaataaa 8
>gb|BG355549.1|BG355549 EM1_17_G07.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 502
Score = 565 bits (285), Expect = e-159
Identities = 429/495 (86%)
Strand = Plus / Minus
Query: 39 gattgtctcaagaatacgtcctctgaatgtctggatatgcgcctgctcctcatcccacca 98
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 502 gattgtctcaagaatacgtcctctgaatgtctggatatgctcctgctcctcatcccacca 443
Query: 99 agattcccaactnnnnncaccctttacaccaactccacctttataaannnaccannntgt 158
|||||||||||| | |||||||||||||||||||||||||||| |||| |||
Sbjct: 442 agattcccaactgctatcgccctttacaccaactccacctttataaagtaaccagtttgt 383
Query: 159 ccagtcatcaaagtcctcaacagtcttttgccactcgaaaccagaagggttgaaaatgta 218
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 382 ccagtcatcgaagtcctcaacagtcttttgccactcgaaaccagaagggttgaatatgta 323
Query: 219 aggcgcgaaaagccaggacataacgaggaaccaactactgatagtaatcagaataaatga 278
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 322 aggcgcgaaaagccaggacataacgaggaaccaactactgatagtaatcagtataaatga 263
Query: 279 agatgaaccgccttnnntgnnnnnatatgcaatntnnncnatcaggaggagagcaacctc 338
|||||||||||| | || ||||| ||| | | || |||||||||||||||||
Sbjct: 262 agatgaaccgcccttcgtgtatccatatgaaatgtaaacgatgaggaggagagcaacctc 203
Query: 339 aagcgctttgacaaagtgacttnnagaatagagcctataattttcagcaaacnttatgtg 398
|||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||
Sbjct: 202 aagcgctttgacaaagtgacttcgagaatagagcctataattttcagcaaattttatgtg 143
Query: 399 ccnnacaacaaaacctctnnnagtagcacgatactttgcancnnnatgaaggattnnnct 458
|| |||||||||||||| |||||| |||||||||| | |||||||||| ||
Sbjct: 142 ccgaacaacaaaacctcttccagtagctttatactttgcaccaccatgaaggattgttct 83
Query: 459 accannntaatnnnnnnttgttncaagcgaaaagnnnaaaaacaccgaacagnnctggag 518
|||| |||| ||||| ||||||||||| ||||||||||||||| ||||||
Sbjct: 82 accaaagtaatgtgtccttgttccaagcgaaaaggtgaaaaacaccgaacagaactggag 23
Query: 519 ctgcattgtaataaa 533
|||||||||||||||
Sbjct: 22 ctgcattgtaataaa 8
>gb|CF482724.1|CF482724 POL1_8_F04.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_8_F04_A002 5', mRNA sequence
Length = 773
Score = 521 bits (263), Expect = e-146
Identities = 369/416 (88%)
Strand = Plus / Minus
Query: 1 acantgccatactgaaacatgagaaatctannnctgnngattgtctcaagaatacgtcct 60
||| ||||||||||||| |||||||||||| || ||||||||||||||||||||||
Sbjct: 465 acaatgccatactgaaatatgagaaatctaaggctcaggattgtctcaagaatacgtcct 406
Query: 61 ctgaatgtctggatatgcgcctgctcctcatcccaccaagattcccaactnnnnncaccc 120
|||||||||||||||||| ||||||||||||||||||||||||||||||| | |||
Sbjct: 405 ctgaatgtctggatatgctcctgctcctcatcccaccaagattcccaactgctatcgccc 346
Query: 121 tttacaccaactccacctttataaannnaccannntgtccagtcatcaaagtcctcaaca 180
||||||||||||||||||||||||| |||| |||||||||||| ||||||||||||
Sbjct: 345 tttacaccaactccacctttataaagtaaccagtttgtccagtcatcgaagtcctcaaca 286
Query: 181 gtcttttgccactcgaaaccagaagggttgaaaatgtaaggcgcgaaaagccaggacata 240
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 285 gtcttttgccactcgaaaccagaagggttgaatatgtaaggcgcgaaaagccaggacata 226
Query: 241 acgaggaaccaactactgatagtaatcagaataaatgaagatgaaccgccttnnntgnnn 300
||||||||||||||||||||||||||||| |||||||||||||||||||| | ||
Sbjct: 225 acgaggaaccaactactgatagtaatcagtataaatgaagatgaaccgcccttcgtgtat 166
Query: 301 nnatatgcaatntnnncnatcaggaggagagcaacctcaagcgctttgacaaagtgactt 360
||||| ||| | | || |||||||||||||||||||| ||||||||||||||||||
Sbjct: 165 ccatatgaaatgtaaacgatgaggaggagagcaacctcaagtgctttgacaaagtgactt 106
Query: 361 nnagaatagagcctataattttcagcaaacnttatgtgccnnacaacaaaacctct 416
||||||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct: 105 cgagaatagagcctataattttcagcaaattttatgtgccgaacaacaaaacctct 50
>gb|BF657000.1|BF657000 OV2_19_G06.b1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 455
Score = 184 bits (93), Expect = 7e-045
Identities = 165/199 (82%)
Strand = Plus / Minus
Query: 335 cctcaagcgctttgacaaagtgacttnnagaatagagcctataattttcagcaaacntta 394
|||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct: 455 cctcaagcgctttgacaaagtgacttcgagaatagagcctataattttcagcaaatttta 396
Query: 395 tgtgccnnacaacaaaacctctnnnagtagcacgatactttgcancnnnatgaaggattn 454
|||||| |||||||||||||| |||||| |||||||||| | ||||||||||
Sbjct: 395 tgtgccgaacaacaaaacctcttccagtagctttatactttgcaccaccatgaaggattg 336
Query: 455 nnctaccannntaatnnnnnnttgttncaagcgaaaagnnnaaaaacaccgaacagnnct 514
|||||| |||| ||||| ||||||||||| ||||||||||||||| ||
Sbjct: 335 ttctaccaaagtaatgtgtccttgttccaagcgaaaaggtgaaaaacaccgaacagaact 276
Query: 515 ggagctgcattgtaataaa 533
|||||||||||||||||||
Sbjct: 275 ggagctgcattgtaataaa 257
>gb|BZ338573.1|BZ338573 ia96c08.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone ia96c08 5', DNA sequence
Length = 649
Score = 125 bits (63), Expect = 5e-027
Identities = 91/104 (87%)
Strand = Plus / Minus
Query: 80 cctgctcctcatcccaccaagattcccaactnnnnncaccctttacaccaactccacctt 139
||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct: 328 cctgctcctcatcccaccaagattcccaactgctatcgccctttacaccaactccacctt 269
Query: 140 tataaannnaccannntgtccagtcatcaaagtcctcaacagtc 183
|||||| |||| |||||||||||| |||||||||||||||
Sbjct: 268 tataaagtaaccagtttgtccagtcatcgaagtcctcaacagtc 225
Score = 105 bits (53), Expect = 5e-021
Identities = 74/83 (89%)
Strand = Plus / Minus
Query: 1 acantgccatactgaaacatgagaaatctannnctgnngattgtctcaagaatacgtcct 60
||| ||||||||||||| |||||||||||| || ||||||||||||||||||||||
Sbjct: 518 acaatgccatactgaaatatgagaaatctaaggctcaggattgtctcaagaatacgtcct 459
Query: 61 ctgaatgtctggatatgcgcctg 83
|||||||||||||||||| ||||
Sbjct: 458 ctgaatgtctggatatgctcctg 436
>gb|CL170431.1|CL170431 104_371_10813804_148_31790_124 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10813804, DNA
sequence
Length = 656
Score = 46.1 bits (23), Expect = 0.004
Identities = 56/69 (81%)
Strand = Plus / Plus
Query: 366 atagagcctataattttcagcaaacnttatgtgccnnacaacaaaacctctnnnagtagc 425
|||||||||||| |||||||||||| | ||||| |||||||| ||||| ||| ||
Sbjct: 113 atagagcctatagttttcagcaaacttcttgtgctctacaacaaagcctctgccagtggc 172
Query: 426 acgatactt 434
||||||||
Sbjct: 173 ccgatactt 181
>gb|CD219775.1|CD219775 CCC1_58_A07.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_58_A07_A007 5', mRNA sequence
Length = 669
Score = 46.1 bits (23), Expect = 0.004
Identities = 56/69 (81%)
Strand = Plus / Minus
Query: 366 atagagcctataattttcagcaaacnttatgtgccnnacaacaaaacctctnnnagtagc 425
|||||||||||| |||||||||||| | ||||| |||||||| ||||| ||| ||
Sbjct: 446 atagagcctatagttttcagcaaacttcttgtgctctacaacaaagcctctgccagtggc 387
Query: 426 acgatactt 434
||||||||
Sbjct: 386 ccgatactt 378
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 80,293
Number of Sequences: 832831
Number of extensions: 80293
Number of successful extensions: 20260
Number of sequences better than 0.5: 7
Number of HSP's better than 0.5 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 20241
Number of HSP's gapped (non-prelim): 12
length of query: 642
length of database: 491,359,669
effective HSP length: 19
effective length of query: 623
effective length of database: 475,535,880
effective search space: 296258853240
effective search space used: 296258853240
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)