BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAD15f02.sg.3.2
(2357 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CD205543.1|CD205543 HS1_14_H08.g1_A012 Heat-shocked seed... 841 0.0
gb|CD424947.1|CD424947 SA1_9_E05.g1_A002 Salicylic acid-tre... 841 0.0
gb|BM324413.1|BM324413 PIC1_31_A03.b1_A002 Pathogen-infecte... 777 0.0
gb|CD425112.1|CD425112 SA1_10_D09.g1_A002 Salicylic acid-tr... 773 0.0
gb|CF428495.1|CF428495 PH1_15_G10.g1_A002 Phosphorous-defic... 739 0.0
gb|CD232301.1|CD232301 SS1_39_A03.g1_A012 Salt-stressed see... 704 0.0
gb|BF586254.1|BF586254 FM1_27_F06.b1_A003 Floral-Induced Me... 702 0.0
gb|BI211443.1|BI211443 IP1_60_H02.b1_A002 Immature pannicle... 652 0.0
gb|BG322647.1|BG322647 EM1_41_E06.b1_A002 Embryo 1 (EM1) So... 593 e-167
gb|BI074711.1|BI074711 IP1_14_A05.b1_A002 Immature pannicle... 553 e-155
gb|BF586909.1|BF586909 FM1_31_A03.b1_A003 Floral-Induced Me... 523 e-146
gb|BF586339.1|BF586339 FM1_27_F06.g1_A003 Floral-Induced Me... 391 e-106
gb|CD205439.1|CD205439 HS1_14_H08.b1_A012 Heat-shocked seed... 379 e-103
gb|CD424871.1|CD424871 SA1_9_E05.b1_A002 Salicylic acid-tre... 359 8e-097
gb|CW158750.1|CW158750 104_564_11148983_116_36395_086 Sorgh... 355 1e-095
gb|CD232222.1|CD232222 SS1_39_A03.b1_A012 Salt-stressed see... 355 1e-095
gb|CF431106.1|CF431106 NIT1_6_D07.b1_A002 Nitrogen-deficien... 355 1e-095
gb|CD425054.1|CD425054 SA1_10_D09.b1_A002 Salicylic acid-tr... 351 2e-094
gb|BG557015.1|BG557015 EM1_41_E06.g1_A002 Embryo 1 (EM1) So... 347 3e-093
gb|BF586716.1|BF586716 FM1_31_A03.g1_A003 Floral-Induced Me... 341 2e-091
gb|CF770894.1|CF770894 DSBF1_11_B12.g1_A010 Drought-stresse... 339 7e-091
gb|BI074396.1|BI074396 IP1_14_A05.g1_A002 Immature pannicle... 335 1e-089
gb|BI211702.1|BI211702 IP1_60_H02.g1_A002 Immature pannicle... 301 2e-079
gb|CF428414.1|CF428414 PH1_15_G10.b1_A002 Phosphorous-defic... 301 2e-079
gb|CL172560.1|CL172560 104_375_10890248_116_31797_152 Sorgh... 178 2e-042
gb|CL172561.1|CL172561 104_375_10890248_148_31796_152 Sorgh... 178 2e-042
gb|CW170531.1|CW170531 104_581_11155255_148_36518_032 Sorgh... 139 1e-030
gb|CW488399.1|CW488399 fsbb001f254m14k0 Sorghum methylation... 139 1e-030
gb|BZ335057.1|BZ335057 hx95c03.b1 WGS-SbicolorF (JM107 adap... 105 2e-020
gb|CW218593.1|CW218593 104_652_11196272_116_37532_028 Sorgh... 105 2e-020
gb|BG556061.1|BG556061 EM1_66_B10.b1_A002 Embryo 1 (EM1) So... 103 7e-020
gb|BZ343010.1|BZ343010 ho32g10.b1 WGS-SbicolorF (JM107 adap... 96 2e-017
gb|CW158751.1|CW158751 104_564_11148983_148_36396_086 Sorgh... 94 7e-017
gb|BM328897.1|BM328897 PIC1_31_A03.g1_A002 Pathogen-infecte... 84 7e-014
gb|CW132225.1|CW132225 104_515_11116096_148_34793_056 Sorgh... 82 3e-013
gb|BF587086.1|BF587086 FM1_32_A09.b1_A003 Floral-Induced Me... 66 2e-008
gb|BZ344349.1|BZ344349 hp62g02.b2 WGS-SbicolorF (JM107 adap... 62 2e-007
gb|BZ348905.1|BZ348905 hp62g02.g2 WGS-SbicolorF (JM107 adap... 62 2e-007
gb|BZ335058.1|BZ335058 hx95c03.g1 WGS-SbicolorF (JM107 adap... 58 4e-006
gb|CW046982.1|CW046982 104_284_10512470_115_30220 Sorghum m... 50 0.001
gb|CW132224.1|CW132224 104_515_11116096_116_34797_056 Sorgh... 50 0.001
gb|CW463198.1|CW463198 fsbb001f211l01f0 Sorghum methylation... 50 0.001
gb|CW256325.1|CW256325 104_721_11226727_116_35138_026 Sorgh... 48 0.004
gb|CW388130.1|CW388130 fsbb001f072m07f0 Sorghum methylation... 48 0.004
gb|CL186237.1|CL186237 104_400_10900077_114_32400_081 Sorgh... 44 0.059
gb|CL186238.1|CL186238 104_400_10900077_116_32404_081 Sorgh... 44 0.059
gb|CW131791.1|CW131791 104_514_11115862_116_34785_081 Sorgh... 44 0.059
gb|CW322439.1|CW322439 104_816_11476099_116_35948_076 Sorgh... 44 0.059
gb|CW349432.1|CW349432 fsbb001f010e05k0 Sorghum methylation... 44 0.059
gb|CW438083.1|CW438083 fsbb001f155i06k0 Sorghum methylation... 44 0.059
gb|CW472723.1|CW472723 fsbb001f227m17f0 Sorghum methylation... 44 0.059
gb|CW488398.1|CW488398 fsbb001f254m14f0 Sorghum methylation... 44 0.059
gb|AW922954.1|AW922954 DG1_47_C10.g1_A002 Dark Grown 1 (DG1... 44 0.059
gb|BE355736.1|BE355736 DG1_116_F11.g1_A002 Dark Grown 1 (DG... 44 0.059
gb|BE359918.1|BE359918 DG1_58_C10.g2_A002 Dark Grown 1 (DG1... 44 0.059
gb|BG054042.1|BG054042 OV2_1_F05.g1_A002 Ovary 2 (OV2) Sorg... 44 0.059
gb|BI098534.1|BI098534 IP1_33_F06.g1_A002 Immature pannicle... 44 0.059
gb|BI098676.1|BI098676 IP1_35_E07.g1_A002 Immature pannicle... 44 0.059
gb|CW122318.1|CW122318 104_501_11110590_116_34680_029 Sorgh... 42 0.23
gb|CW349431.1|CW349431 fsbb001f010e05f0 Sorghum methylation... 42 0.23
gb|BF586220.1|BF586220 FM1_27_C01.b1_A003 Floral-Induced Me... 42 0.23
>gb|CD205543.1|CD205543 HS1_14_H08.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_14_H08_A012 5', mRNA sequence
Length = 673
Score = 841 bits (424), Expect = 0.0
Identities = 591/649 (91%), Gaps = 12/649 (1%)
Strand = Plus / Plus
Query: 68 gctcccgaaatccaaattggaacaggcgattctgagctcgggttttgttccggggacgga 127
||||||||||||||||||| ||||| ||||||||||| ||| |||||||||||| | ||
Sbjct: 25 gctcccgaaatccaaattgatacaggggattctgagcttggggtttgttccgggggccga 84
Query: 128 ttcctgtgccggcggacgggatgtcaggccctctcgaccgatttgctaggccatgct--- 184
||| | | |||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct: 85 ttctgggggcggcggacgggatgtcaggccccctcgaccgatttgctaggccatcctgtg 144
Query: 185 ------ttgaagggtttgtacataacgatgaaaggaaagagagcagatctgatgcagaca 238
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 145 caggttttgaagggtttgtgcataacgatgaaaggaaagagagcagatctgatgcagaca 204
Query: 239 actcagaaggagataagaagactaagattgggtctttcaagaaaaaagcaattaatgcgg 298
||||||||||||||||||||||||| || || |||||||||||||||||||| ||||| |
Sbjct: 205 actcagaaggagataagaagactaaaatcggatctttcaagaaaaaagcaatcaatgcag 264
Query: 299 ggaacaaattcaggcattccttgagaaggagaagcnnnnnnnngaccgaaaggggggatt 358
|||||||||||||||||||| |||||||||||||| || ||||||||||| |
Sbjct: 265 ggaacaaattcaggcattccctgagaaggagaagcaaaaa---gaaagaaaggggggagt 321
Query: 359 ccatcaaggacataagggacgttaaagagcttcaagatgttgagacattccgacaatgct 418
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 322 ccatcaaggacataagggacgttaaagagcttcaagatgttgagacatttcgacaatgct 381
Query: 419 taattgatgaggatttgctgccaccacagcacgatgattatcacatgatgttaaggttcc 478
|||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct: 382 taattgatgaggatttgctgccacaacagcatgatgattatcacatgatgttaaggttcc 441
Query: 479 taaaagcacggaaatttgaagttgagaaagctaagagtatgtggtcagacatgatcaatt 538
|||||||| ||||||||||||||||||||||||||| |||||||||||||||| | || |
Sbjct: 442 taaaagcaaggaaatttgaagttgagaaagctaagaatatgtggtcagacatgcttaaat 501
Query: 539 ggaggaaggaattcggagtcgacaaaatagaggaatttgactacaccgagttagatgaag 598
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 ggaggaaggaattcggggtcgacaaaatagaggaatttgactacaccgagttagatgaag 561
Query: 599 tgacagagtattacccacaattttatcatggagtagataaagagggaagacctgtataca 658
| || ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct: 562 ttacgaagtattacccacaattttatcatggggtagataaagagggaagacctgtctaca 621
Query: 659 tagaattagtaggaaaagttgatgcaaacaagctaatacaagtgacaac 707
|||| ||| |||||||||||||||||| ||||||| |||||||||||||
Sbjct: 622 tagagttaataggaaaagttgatgcaagcaagctattacaagtgacaac 670
>gb|CD424947.1|CD424947 SA1_9_E05.g1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_9_E05_A002 5', mRNA sequence
Length = 665
Score = 841 bits (424), Expect = 0.0
Identities = 565/613 (92%), Gaps = 3/613 (0%)
Strand = Plus / Plus
Query: 68 gctcccgaaatccaaattggaacaggcgattctgagctcgggttttgttccggggacgga 127
||||||||||||| ||||| ||||| ||||||||||| ||| |||||||||||| | ||
Sbjct: 56 gctcccgaaatccgaattgatacaggggattctgagcttggggtttgttccgggggccga 115
Query: 128 ttcctgtgccggcggacgggatgtcaggccctctcgaccgatttgctaggccatgctttg 187
||| | | |||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct: 116 ttctgggggcggcggacgggatgtcaggccccctcgaccgatttgctaggccatgttttg 175
Query: 188 aagggtttgtacataacgatgaaaggaaagagagcagatctgatgcagacaactcagaag 247
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 176 aagggtttgtgcataacgatgaaaggaaagagagcagatctgatgcagacaactcagaag 235
Query: 248 gagataagaagactaagattgggtctttcaagaaaaaagcaattaatgcggggaacaaat 307
|||||||||||||||| || || |||||||||||||||||||| ||||| ||||||||||
Sbjct: 236 gagataagaagactaaaatcggatctttcaagaaaaaagcaatcaatgcagggaacaaat 295
Query: 308 tcaggcattccttgagaaggagaagcnnnnnnnngaccgaaaggggggattccatcaagg 367
||||||||||| |||||||||||||| || ||||||||||| ||||||||||
Sbjct: 296 tcaggcattccctgagaaggagaagcaaaaa---gaaagaaaggggggagtccatcaagg 352
Query: 368 acataagggacgttaaagagcttcaagatgttgagacattccgacaatgcttaattgatg 427
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 353 acataagggacgttaaagagcttcaagatgttgagacatttcgacaatgcttaattgatg 412
Query: 428 aggatttgctgccaccacagcacgatgattatcacatgatgttaaggttcctaaaagcac 487
||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 413 aggatttgctgccacaacagcatgatgattatcacatgatgttaaggttcctaaaagcaa 472
Query: 488 ggaaatttgaagttgagaaagctaagagtatgtggtcagacatgatcaattggaggaagg 547
||||||||||||||||||||||||||| |||||||||||||||| | || ||||||||||
Sbjct: 473 ggaaatttgaagttgagaaagctaagaatatgtggtcagacatgcttaaatggaggaagg 532
Query: 548 aattcggagtcgacaaaatagaggaatttgactacaccgagttagatgaagtgacagagt 607
||||||| |||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct: 533 aattcggggtcgacaaaatagaggaatttgactacaccgagttagatgaagttacgaagt 592
Query: 608 attacccacaattttatcatggagtagataaagagggaagacctgtatacatagaattag 667
|||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||
Sbjct: 593 attacccacaattttatcatggggtagataaagagggaagacctgtctacatagagttaa 652
Query: 668 taggaaaagttga 680
|||||||||||||
Sbjct: 653 taggaaaagttga 665
>gb|BM324413.1|BM324413 PIC1_31_A03.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 528
Score = 777 bits (392), Expect = 0.0
Identities = 491/525 (93%), Gaps = 3/525 (0%)
Strand = Plus / Plus
Query: 138 ggcggacgggatgtcaggccctctcgaccgatttgctaggccatgctttgaagggtttgt 197
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct: 7 ggcggacgggatgtcaggccccctcgaccgatttgctaggccatgttttgaagggtttgt 66
Query: 198 acataacgatgaaaggaaagagagcagatctgatgcagacaactcagaaggagataagaa 257
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67 gcataacgatgaaaggaaagagagcagatctgatgcagacaactcagaaggagataagaa 126
Query: 258 gactaagattgggtctttcaagaaaaaagcaattaatgcggggaacaaattcaggcattc 317
|||||| || || |||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct: 127 gactaaaatcggatctttcaagaaaaaagcaatcaatgcagggaacaaattcaggcattc 186
Query: 318 cttgagaaggagaagcnnnnnnnngaccgaaaggggggattccatcaaggacataaggga 377
| |||||||||||||| || ||||||||||| ||||||||||||||||||||
Sbjct: 187 cctgagaaggagaagcaaaaa---gaaagaaaggggggagtccatcaaggacataaggga 243
Query: 378 cgttaaagagcttcaagatgttgagacattccgacaatgcttaattgatgaggatttgct 437
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 244 cgttaaagagcttcaagatgttgagacatttcgacaatgcttaattgatgaggatttgct 303
Query: 438 gccaccacagcacgatgattatcacatgatgttaaggttcctaaaagcacggaaatttga 497
||||| |||||| |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 304 gccacaacagcatgatgattatcacatgatgttaaggttcctaaaagcaaggaaatttga 363
Query: 498 agttgagaaagctaagagtatgtggtcagacatgatcaattggaggaaggaattcggagt 557
||||||||||||||||| |||||||||||||||| | || ||||||||||||||||| ||
Sbjct: 364 agttgagaaagctaagaatatgtggtcagacatgcttaaatggaggaaggaattcggggt 423
Query: 558 cgacaaaatagaggaatttgactacaccgagttagatgaagtgacagagtattacccaca 617
|||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct: 424 cgacaaaatagaggaatttgactacaccgagttagatgaagttacgaagtattacccaca 483
Query: 618 attttatcatggagtagataaagagggaagacctgtatacataga 662
|||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct: 484 attttatcatggggtagataaagagggaagacctgtctacataga 528
>gb|CD425112.1|CD425112 SA1_10_D09.g1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_10_D09_A002 5', mRNA sequence
Length = 584
Score = 773 bits (390), Expect = 0.0
Identities = 516/559 (92%), Gaps = 3/559 (0%)
Strand = Plus / Plus
Query: 68 gctcccgaaatccaaattggaacaggcgattctgagctcgggttttgttccggggacgga 127
||||||||||||||||||| ||||| ||||||||||| ||| |||||||||||| | ||
Sbjct: 29 gctcccgaaatccaaattgatacaggggattctgagcttggggtttgttccgggggccga 88
Query: 128 ttcctgtgccggcggacgggatgtcaggccctctcgaccgatttgctaggccatgctttg 187
||| | | |||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct: 89 ttctgggggcggcggacgggatgtcaggccccctcgaccgatttgctaggccatgttttg 148
Query: 188 aagggtttgtacataacgatgaaaggaaagagagcagatctgatgcagacaactcagaag 247
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 149 aagggtttgtgcataacgatgaaaggaaagagagcagatctgatgcagacaactcagaag 208
Query: 248 gagataagaagactaagattgggtctttcaagaaaaaagcaattaatgcggggaacaaat 307
|||||||||||||||| || || |||||||||||||||||||| ||||| ||||||||||
Sbjct: 209 gagataagaagactaaaatcggatctttcaagaaaaaagcaatcaatgcagggaacaaat 268
Query: 308 tcaggcattccttgagaaggagaagcnnnnnnnngaccgaaaggggggattccatcaagg 367
||||||||||| |||||||||||||| || ||||||||||| ||||||||||
Sbjct: 269 tcaggcattccctgagaaggagaagcaaaaa---gaaagaaaggggggagtccatcaagg 325
Query: 368 acataagggacgttaaagagcttcaagatgttgagacattccgacaatgcttaattgatg 427
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 326 acataagggacgttaaagagcttcaagatgttgagacatttcgacaatgcttaattgatg 385
Query: 428 aggatttgctgccaccacagcacgatgattatcacatgatgttaaggttcctaaaagcac 487
||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 386 aggatttgctgccacaacagcatgatgattatcacatgatgttaaggttcctaaaagcaa 445
Query: 488 ggaaatttgaagttgagaaagctaagagtatgtggtcagacatgatcaattggaggaagg 547
||||||||||||||||||||||||||| |||||||||||||||| | || ||||||||||
Sbjct: 446 ggaaatttgaagttgagaaagctaagaatatgtggtcagacatgcttaaatggaggaagg 505
Query: 548 aattcggagtcgacaaaatagaggaatttgactacaccgagttagatgaagtgacagagt 607
||||||| |||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct: 506 aattcggggtcgacaaaatagaggaatttgactacaccgagttagatgaagttacgaagt 565
Query: 608 attacccacaattttatca 626
|||||||||||||||||||
Sbjct: 566 attacccacaattttatca 584
>gb|CF428495.1|CF428495 PH1_15_G10.g1_A002 Phosphorous-deficient seedlings Sorghum bicolor
cDNA clone PH1_15_G10_A002 5', mRNA sequence
Length = 566
Score = 739 bits (373), Expect = 0.0
Identities = 503/546 (92%), Gaps = 4/546 (0%)
Strand = Plus / Plus
Query: 68 gctcccgaaatccaaattggaacaggcgattctgagctcgggttttgttccggggacgga 127
||||||||||||||| ||| ||||| ||||||||||| ||| |||||||||||| | ||
Sbjct: 25 gctcccgaaatccaa-ttgatacaggggattctgagcttggggtttgttccgggggccga 83
Query: 128 ttcctgtgccggcggacgggatgtcaggccctctcgaccgatttgctaggccatgctttg 187
||| | | |||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct: 84 ttctgggggcggcggacgggatgtcaggccccctcgaccgatttgctaggccatgttttg 143
Query: 188 aagggtttgtacataacgatgaaaggaaagagagcagatctgatgcagacaactcagaag 247
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144 aagggtttgtgcataacgatgaaaggaaagagagcagatctgatgcagacaactcagaag 203
Query: 248 gagataagaagactaagattgggtctttcaagaaaaaagcaattaatgcggggaacaaat 307
|||||||||||||||| || ||||||||||||||||||||||| ||||| ||||||||||
Sbjct: 204 gagataagaagactaaaatcgggtctttcaagaaaaaagcaatcaatgcagggaacaaat 263
Query: 308 tcaggcattccttgagaaggagaagcnnnnnnnngaccgaaaggggggattccatcaagg 367
||||||||||| |||||||||||||| || ||||||||||| ||||||||||
Sbjct: 264 tcaggcattccctgagaaggagaagcaaaaa---gaaagaaaggggggagtccatcaagg 320
Query: 368 acataagggacgttaaagagcttcaagatgttgagacattccgacaatgcttaattgatg 427
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 321 acataagggacgttaaagagcttcaagatgttgagacatttcgacaatgcttaattgatg 380
Query: 428 aggatttgctgccaccacagcacgatgattatcacatgatgttaaggttcctaaaagcac 487
||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggatttgctgccacaacagcatgatgattatcacatgatgttaaggttcctaaaagcaa 440
Query: 488 ggaaatttgaagttgagaaagctaagagtatgtggtcagacatgatcaattggaggaagg 547
||||||||||||||||||||||||||| |||||||||||||||| | || ||||||||||
Sbjct: 441 ggaaatttgaagttgagaaagctaagaatatgtggtcagacatgcttaaatggaggaagg 500
Query: 548 aattcggagtcgacaaaatagaggaatttgactacaccgagttagatgaagtgacagagt 607
||||||| |||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct: 501 aattcggggtcgacaaaatagaggaatttgactacaccgagttagatgaagttacgaagt 560
Query: 608 attacc 613
||||||
Sbjct: 561 attacc 566
>gb|CD232301.1|CD232301 SS1_39_A03.g1_A012 Salt-stressed seedlings Sorghum bicolor cDNA clone
SS1_39_A03_A012 5', mRNA sequence
Length = 494
Score = 704 bits (355), Expect = 0.0
Identities = 459/494 (92%)
Strand = Plus / Plus
Query: 954 cttcaagatgttatggagcacaataaaatcattcctcgatccaaaaactgcttccaagat 1013
|||||||||| ||||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct: 1 cttcaagatgctatggagcacaataaaatcattccttgatccaaaaactgtttccaagat 60
Query: 1014 ccatgttcttgggaataagtatcaacataagttgctcgaaataattgacgagtgtgaact 1073
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct: 61 tcatgttcttgggaataagtaccaacataagttgctcgaaataattgacgagtgtgaatt 120
Query: 1074 gccagaatttcttggtggcaaatgcaattgtattgaaggttgccaaagatctgacaaagg 1133
|||||||||| | |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 121 gccagaatttttcggtggcaaatgcaactgtattgaaggttgccaaagatctgacaaagg 180
Query: 1134 tccttggaaggatcccaacataataaagagagtcctcaatgacgaggcaaactacggcag 1193
||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||
Sbjct: 181 tccttggaaggatcccaacataataaagagagtcctcaatggtgaggccaactatggcag 240
Query: 1194 acaaattgtgaccatatccagcattgatggaaaaataatacgttatgctaggccagatca 1253
|||||||||||||||||||||| ||||||||| ||||| ||||||||||||||| ||
Sbjct: 241 gcaaattgtgaccatatccagcactgatggaaagataatcagttatgctaggccagggca 300
Query: 1254 cccaactagaaaagggagtgatgcatctgccgagtctggatctgaagtggaagatgtaac 1313
||||||||||||||| |||||||| |||||||||||||| |||||||||||||| | |
Sbjct: 301 cccaactagaaaaggcagtgatgcgtctgccgagtctgggtctgaagtggaagacgnagt 360
Query: 1314 atctcctactgcatcaaggaacctgattacacatcctattttgacccctgttcacgaaga 1373
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 361 atctcctactgcatcaaggaacctgattacacatcctattttgacccctgttcacgagga 420
Query: 1374 gtcaaaattgtcgccacatggttccacatttgttgctcatgcttctattgaagaaaacat 1433
||||||||||||| ||||||| || |||||| ||||||||||||||||||||||| |||
Sbjct: 421 gtcaaaattgtcggcacatggatctgcatttgctgctcatgcttctattgaagaaagcat 480
Query: 1434 tcctgttgtagaca 1447
||||||||| ||||
Sbjct: 481 tcctgttgtggaca 494
>gb|BF586254.1|BF586254 FM1_27_F06.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum propinquum
cDNA, mRNA sequence
Length = 462
Score = 702 bits (354), Expect = 0.0
Identities = 426/450 (94%)
Strand = Plus / Plus
Query: 605 agtattacccacaattttatcatggagtagataaagagggaagacctgtatacatagaat 664
||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |
Sbjct: 13 agtattacccacaattttatcatggggtagataaagagggaagacctgtctacatagagt 72
Query: 665 tagtaggaaaagttgatgcaaacaagctaatacaagtgacaaccctagatcggtatgtaa 724
|| |||||||||||||||||||||||||| ||||||||||||| |||||||||||||| |
Sbjct: 73 taataggaaaagttgatgcaaacaagctattacaagtgacaactctagatcggtatgtga 132
Query: 725 aataccatgtcaaagaatttgagaagtgcttccagatgaaatttccagcttgcaccattg 784
||||||||||||| || ||||||| ||| |||||||||| ||||||||||||| ||||||
Sbjct: 133 aataccatgtcaaggagtttgagaggtgtttccagatgagatttccagcttgctccattg 192
Query: 785 ctgctaaaaagcacatagattcgtccactactattttggatgtgcaaggcgtgggtttca 844
|||| ||||||||||||||||| || |||||||||||||| |||||||||||||||||||
Sbjct: 193 ctgcaaaaaagcacatagattcatcgactactattttggacgtgcaaggcgtgggtttca 252
Query: 845 agaacttctcgaaatctgccagagaattaatcacacgattacagaagatcgacagtgata 904
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct: 253 agaacttctcgaaatctgccagggaattaatcacacgattacagaagattgacagtgata 312
Query: 905 actacccagagacactgtgccggatgtatataattaatgctggccaaggcttcaagatgt 964
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 actacccagagacactgtgccggatgtatataattaatgctggccaaggcttcaagatgc 372
Query: 965 tatggagcacaataaaatcattcctcgatccaaaaactgcttccaagatccatgttcttg 1024
||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||||
Sbjct: 373 tatggagcacaataaaatcattccttgatccaaaaactgtttccaagattcatgttcttg 432
Query: 1025 ggaataagtatcaacataagttgctcgaaa 1054
|||||||||| |||||||||||||||||||
Sbjct: 433 ggaataagtaccaacataagttgctcgaaa 462
>gb|BI211443.1|BI211443 IP1_60_H02.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 445
Score = 652 bits (329), Expect = 0.0
Identities = 410/437 (93%)
Strand = Plus / Plus
Query: 584 ccgagttagatgaagtgacagagtattacccacaattttatcatggagtagataaagagg 643
|||||||||||||||| || ||||||||||||||||||||||||| |||||||||||||
Sbjct: 9 ccgagttagatgaagttacgaagtattacccacaattttatcatggggtagataaagagg 68
Query: 644 gaagacctgtatacatagaattagtaggaaaagttgatgcaaacaagctaatacaagtga 703
|||||||||| |||||||| ||| |||||||||||||||||| ||||||| |||||||||
Sbjct: 69 gaagacctgtctacatagagttaataggaaaagttgatgcaagcaagctattacaagtga 128
Query: 704 caaccctagatcggtatgtaaaataccatgtcaaagaatttgagaagtgcttccagatga 763
|||| |||||||||||||| |||||||||||||| || ||||||| ||| ||||||||||
Sbjct: 129 caactctagatcggtatgtgaaataccatgtcaaggagtttgagaggtgtttccagatga 188
Query: 764 aatttccagcttgcaccattgctgctaaaaagcacatagattcgtccactactattttgg 823
||||||||||||| |||||||||| ||||||||||||||||| || |||||||||||||
Sbjct: 189 gatttccagcttgctccattgctgcaaaaaagcacatagattcatcgactactattttgg 248
Query: 824 atgtgcaaggcgtgggtttcaagaacttctcgaaatctgccagagaattaatcacacgat 883
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 249 acgtgcaaggcgtgggtttcaagaacttctcgaaatctgccagggaattaatcacacgat 308
Query: 884 tacagaagatcgacagtgataactacccagagacactgtgccggatgtatataattaatg 943
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 tacagaagattgacagtgataactacccagagacactgtgccggatgtatataattaatg 368
Query: 944 ctggccaaggcttcaagatgttatggagcacaataaaatcattcctcgatccaaaaactg 1003
|||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct: 369 ctggccaaggcttcaagatgctatggagcacaataaaatcattccttgatccaaaaactg 428
Query: 1004 cttccaagatccatgtt 1020
||||||||| ||||||
Sbjct: 429 tttccaagattcatgtt 445
>gb|BG322647.1|BG322647 EM1_41_E06.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 498
Score = 593 bits (299), Expect = e-167
Identities = 401/436 (91%), Gaps = 3/436 (0%)
Strand = Plus / Plus
Query: 68 gctcccgaaatccaaattggaacaggcgattctgagctcgggttttgttccggggacgga 127
||||||||||||||||||| ||||| ||||||||||| ||| |||||||||||| | ||
Sbjct: 66 gctcccgaaatccaaattgatacaggggattctgagcttggggtttgttccgggggccga 125
Query: 128 ttcctgtgccggcggacgggatgtcaggccctctcgaccgatttgctaggccatgctttg 187
||| | | |||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct: 126 ttctgggggcggcggacgggatgtcaggccccctcgaccgatttgctaggccatgttttg 185
Query: 188 aagggtttgtacataacgatgaaaggaaagagagcagatctgatgcagacaactcagaag 247
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 aagggtttgtgcataacgatgaaaggaaagagagcagatctgatgcagacaactcagaag 245
Query: 248 gagataagaagactaagattgggtctttcaagaaaaaagcaattaatgcggggaacaaat 307
|||||||||||||||| || || |||||||||||||||||||| ||||| ||||||||||
Sbjct: 246 gagataagaagactaaaatcggatctttcaagaaaaaagcaatcaatgcagggaacaaat 305
Query: 308 tcaggcattccttgagaaggagaagcnnnnnnnngaccgaaaggggggattccatcaagg 367
||||||||||| |||||||||||||| || ||||||||||| ||||||||||
Sbjct: 306 tcaggcattccctgagaaggagaagc---aaaaagaaagaaaggggggagtccatcaagg 362
Query: 368 acataagggacgttaaagagcttcaagatgttgagacattccgacaatgcttaattgatg 427
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 363 acataagggacgttaaagagcttcaagatgttgagacatttcgacaatgcttaattgatg 422
Query: 428 aggatttgctgccaccacagcacgatgattatcacatgatgttaaggttcctaaaagcac 487
||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 423 aggatttgctgccacaacagcatgatgattatcacatgatgttaaggttcctaaaagcaa 482
Query: 488 ggaaatttgaagttga 503
||||||||||||||||
Sbjct: 483 ggaaatttgaagttga 498
>gb|BI074711.1|BI074711 IP1_14_A05.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 451
Score = 553 bits (279), Expect = e-155
Identities = 378/412 (91%), Gaps = 3/412 (0%)
Strand = Plus / Plus
Query: 68 gctcccgaaatccaaattggaacaggcgattctgagctcgggttttgttccggggacgga 127
||||||||||||||||||| ||||| ||||||||||| ||| |||||||||||| | ||
Sbjct: 43 gctcccgaaatccaaattgatacaggggattctgagcttggggtttgttccgggggccga 102
Query: 128 ttcctgtgccggcggacgggatgtcaggccctctcgaccgatttgctaggccatgctttg 187
||| | | |||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct: 103 ttctgggggcggcggacgggatgtcaggccccctcgaccgatttgctaggccatgttttg 162
Query: 188 aagggtttgtacataacgatgaaaggaaagagagcagatctgatgcagacaactcagaag 247
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 163 aagggtttgtgcataacgatgaaaggaaagagagcagatctgatgcagacaactcagaag 222
Query: 248 gagataagaagactaagattgggtctttcaagaaaaaagcaattaatgcggggaacaaat 307
|||||||||||||||| || || |||||||||||||||||||| ||||| ||||||||||
Sbjct: 223 gagataagaagactaaaatcggatctttcaagaaaaaagcaatcaatgcagggaacaaat 282
Query: 308 tcaggcattccttgagaaggagaagcnnnnnnnngaccgaaaggggggattccatcaagg 367
||||||||||| |||||||||||||| || ||||||||||| ||||||||||
Sbjct: 283 tcaggcattccctgagaaggagaagc---aaaaagaaagaaaggggggagtccatcaagg 339
Query: 368 acataagggacgttaaagagcttcaagatgttgagacattccgacaatgcttaattgatg 427
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 340 acataagggacgttaaagagcttcaagatgttgagacatttcgacaatgcttaattgatg 399
Query: 428 aggatttgctgccaccacagcacgatgattatcacatgatgttaaggttcct 479
||||||||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct: 400 aggatttgctgccacaacagcatgatgattatcacatgatgttaaggttcct 451
>gb|BF586909.1|BF586909 FM1_31_A03.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 360
Score = 523 bits (264), Expect = e-146
Identities = 327/348 (93%)
Strand = Plus / Plus
Query: 605 agtattacccacaattttatcatggagtagataaagagggaagacctgtatacatagaat 664
||||||||||||||||||||| ||| ||||||||||||||||||||||| |||||||| |
Sbjct: 13 agtattacccacaattttatcgtggggtagataaagagggaagacctgtctacatagagt 72
Query: 665 tagtaggaaaagttgatgcaaacaagctaatacaagtgacaaccctagatcggtatgtaa 724
|| |||||||||||||||||||||||||| ||||||||||||| |||||||||||||| |
Sbjct: 73 taataggaaaagttgatgcaaacaagctattacaagtgacaactctagatcggtatgtga 132
Query: 725 aataccatgtcaaagaatttgagaagtgcttccagatgaaatttccagcttgcaccattg 784
||||||||||||| || ||||||| ||| |||||||||| ||||||||||||| ||||||
Sbjct: 133 aataccatgtcaaggagtttgagaggtgtttccagatgagatttccagcttgctccattg 192
Query: 785 ctgctaaaaagcacatagattcgtccactactattttggatgtgcaaggcgtgggtttca 844
|||| ||||||||||||||||| || |||||||||||||| |||||||||||||||||||
Sbjct: 193 ctgcaaaaaagcacatagattcatcgactactattttggacgtgcaaggcgtgggtttca 252
Query: 845 agaacttctcgaaatctgccagagaattaatcacacgattacagaagatcgacagtgata 904
|||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||
Sbjct: 253 agaacttctcgaaatctgccagggaattaatgacacgattacagaagattgacagtgata 312
Query: 905 actacccagagacactgtgccggatgtatataattaatgctggccaag 952
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 actacccagagacactgtgccggatgtatataattaatgctggccaag 360
>gb|BF586339.1|BF586339 FM1_27_F06.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum propinquum
cDNA, mRNA sequence
Length = 568
Score = 391 bits (197), Expect = e-106
Identities = 455/539 (84%), Gaps = 14/539 (2%)
Strand = Plus / Plus
Query: 1603 tgttccgtcccgagcaagatggccagaaggatctccagccagtctagcaagcacgacgac 1662
||||| ||||| ||||||||||| ||||||||||| | ||| |||| | ||| || |||
Sbjct: 8 tgttctgtcccaagcaagatggctagaaggatctctaaccaacctagtaggcatgatgac 67
Query: 1663 taccgcggcgagtatcctcaagaggaggaggagcacaaggaggagttccggcctccgtct 1722
|| || | || ||||||||||| ||||| | ||||||||| || || ||||| |||
Sbjct: 68 tatcgtgttgaatatcctcaagaacaggagta---caaggaggaatttcgacctccatct 124
Query: 1723 cctgccccgtcctacacggagaaggacgtgctctcgtcgatgctgagacggctcggtgag 1782
|||||||| ||||| || || ||||| || || || |||||||| ||||| || ||||||
Sbjct: 125 cctgccccatcctatacagaaaaggatgtactttcatcgatgctaagacgactaggtgag 184
Query: 1783 ctggagggcagggtgcaggtgctcgagacgaagccgtccgagatgccgtttgagaaggag 1842
||||||| || |||||||||||| || || |||||||| |||||||| ||||| |||||
Sbjct: 185 ctggaggacaaggtgcaggtgcttgaaacaaagccgtctgagatgccatttgaaaaggaa 244
Query: 1843 gagctgctcaacgcagccgtccgccgcgtggacgcgctggaagccgagctgatctccacg 1902
|| ||||||| |||||||||||||||||||| || ||||||| ||| |||| |||||
Sbjct: 245 gaattgctcaatgcagccgtccgccgcgtggatgcattggaagctgagttgatttccaca 304
Query: 1903 aagaaggccctttacgatgctctgatgcgacaggatgagctgctcgcgtacattgacagg 1962
|||||||||||||| |||||| ||||||||||||||||||| ||||| ||||||||||||
Sbjct: 305 aagaaggccctttatgatgctttgatgcgacaggatgagctactcgcatacattgacagg 364
Query: 1963 caggagctgatcaagttccgtaaaaagaagttctgcttctaagatctgaccatggagcag 2022
||| |||||||||| || ||||||||||||||||||||||||||| ||||| ||||||||
Sbjct: 365 cagcagctgatcaaatttcgtaaaaagaagttctgcttctaagatttgaccgtggagcag 424
Query: 2023 ctggtcatgtccggagccgttcgtgtatattgttggatcgcggctagtacggtgaatgat 2082
||| |||||||||||||||||||||||||||| ||| ||||||| || | ||||||
Sbjct: 425 ctgttcatgtccggagccgttcgtgtatattg---gattgcggctaatatgttgaatg-- 479
Query: 2083 gtaatgtgtccatctgtacaagtgtgtaacggaacggtgtaagtatagtaggaaaacaa 2141
||| ||||||||||||| ||||||||||| | ||||||||||||||||||||||
Sbjct: 480 -taacgtgtccatctgtagaagtgtgtaacag-----tgtaagtatagtaggaaaacaa 532
>gb|CD205439.1|CD205439 HS1_14_H08.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA clone
HS1_14_H08_A012 3', mRNA sequence
Length = 635
Score = 379 bits (191), Expect = e-103
Identities = 387/451 (85%), Gaps = 11/451 (2%)
Strand = Plus / Plus
Query: 1691 aggagcacaaggaggagttccggcctccgtctcctgccccgtcctacacggagaaggacg 1750
||||| |||||||||| || || ||||| ||||||||||| ||||| || || ||||| |
Sbjct: 14 aggagtacaaggaggaatttcgacctccatctcctgccccatcctatacagaaaaggatg 73
Query: 1751 tgctctcgtcgatgctgagacggctcggtgagctggagggcagggtgcaggtgctcgaga 1810
| || || |||||||| ||||| || ||||||||||||| || |||||||||||| || |
Sbjct: 74 tactttcatcgatgctaagacgactaggtgagctggaggacaaggtgcaggtgcttgaaa 133
Query: 1811 cgaagccgtccgagatgccgtttgagaaggaggagctgctcaacgcagccgtccgccgcg 1870
| |||||||| |||||||| ||||| ||||| || ||||||| ||||||||||||||||
Sbjct: 134 caaagccgtctgagatgccatttgaaaaggaagaattgctcaatgcagccgtccgccgcg 193
Query: 1871 tggacgcgctggaagccgagctgatctccacgaagaaggccctttacgatgctctgatgc 1930
|||| || ||||||| ||| |||| ||||| |||||||||||||| |||||| ||||||
Sbjct: 194 tggatgcattggaagctgagttgatttccacaaagaaggccctttatgatgctttgatgc 253
Query: 1931 gacaggatgagctgctcgcgtacattgacaggcaggagctgatcaagttccgtaaaaaga 1990
||||||||||||| ||||| |||||||||||||| |||||||||| || ||||||||||
Sbjct: 254 gacaggatgagctactcgcacacattgacaggcagcagctgatcaaatttcgtaaaaaga 313
Query: 1991 agttctgcttctaagatctgaccatggagcagctggtcatgtccggagccgttcgtgtat 2050
||||||||||||||| | ||||| ||||||||||| ||||||||||||||||||||||||
Sbjct: 314 agttctgcttctaaggtttgaccgtggagcagctgttcatgtccggagccgttcgtgtat 373
Query: 2051 attgttggatcgcggctagtacggtgaatgatgtaatgtgtccatctgtacaagtgtgta 2110
|||| ||| ||||||| || | |||||| ||||||||||||||||| |||||||||
Sbjct: 374 attg---gattgcggctaatatgttgaatg---taatgtgtccatctgtagaagtgtgta 427
Query: 2111 acggaacggtgtaagtatagtaggaaaacaa 2141
|| | ||||||||||||||||||||||
Sbjct: 428 acag-----tgtaagtatagtaggaaaacaa 453
Score = 83.8 bits (42), Expect = 7e-014
Identities = 54/57 (94%), Gaps = 2/57 (3%)
Strand = Plus / Plus
Query: 2158 tagcacttgtgtgctagcctaaattgtaatcttgc--aagtcggtgcatagctgatt 2212
||||||||||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct: 559 tagcacttgtgtgctagcctaaattgtaatcttgcaaaagttggtgcatagctgatt 615
>gb|CD424871.1|CD424871 SA1_9_E05.b1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_9_E05_A002 3', mRNA sequence
Length = 588
Score = 359 bits (181), Expect = 8e-097
Identities = 359/417 (86%), Gaps = 11/417 (2%)
Strand = Plus / Plus
Query: 1725 tgccccgtcctacacggagaaggacgtgctctcgtcgatgctgagacggctcggtgagct 1784
|||||| ||||| || || ||||| || || || |||||||| ||||| || ||||||||
Sbjct: 1 tgccccatcctatacagaaaaggatgtactttcatcgatgctaagacgactaggtgagct 60
Query: 1785 ggagggcagggtgcaggtgctcgagacgaagccgtccgagatgccgtttgagaaggagga 1844
||||| || |||||||||||| || || |||||||| |||||||| ||||| ||||| ||
Sbjct: 61 ggaggacaaggtgcaggtgcttgaaacaaagccgtctgagatgccatttgaaaaggaaga 120
Query: 1845 gctgctcaacgcagccgtccgccgcgtggacgcgctggaagccgagctgatctccacgaa 1904
||||||| |||||||||||||||||||| || ||||||| ||| |||| ||||| ||
Sbjct: 121 attgctcaatgcagccgtccgccgcgtggatgcattggaagctgagttgatttccacaaa 180
Query: 1905 gaaggccctttacgatgctctgatgcgacaggatgagctgctcgcgtacattgacaggca 1964
|||||||||||| |||||| ||||||||||||||||||| ||||| ||||||||||||||
Sbjct: 181 gaaggccctttatgatgctttgatgcgacaggatgagctactcgcatacattgacaggca 240
Query: 1965 ggagctgatcaagttccgtaaaaagaagttctgcttctaagatctgaccatggagcagct 2024
| |||||||||| || ||||||||||||||||||||||||| | ||||| ||||||||||
Sbjct: 241 gcagctgatcaaatttcgtaaaaagaagttctgcttctaaggtttgaccgtggagcagct 300
Query: 2025 ggtcatgtccggagccgttcgtgtatattgttggatcgcggctagtacggtgaatgatgt 2084
| |||||||||||||||||||||||||||| ||| ||||||| || | |||||| |
Sbjct: 301 gttcatgtccggagccgttcgtgtatattg---gattgcggctaatatgttgaatg---t 354
Query: 2085 aatgtgtccatctgtacaagtgtgtaacggaacggtgtaagtatagtaggaaaacaa 2141
|||||||||||||||| ||||||||||| | ||||||||||||||||||||||
Sbjct: 355 aatgtgtccatctgtagaagtgtgtaacag-----tgtaagtatagtaggaaaacaa 406
Score = 83.8 bits (42), Expect = 7e-014
Identities = 54/57 (94%), Gaps = 2/57 (3%)
Strand = Plus / Plus
Query: 2158 tagcacttgtgtgctagcctaaattgtaatcttgc--aagtcggtgcatagctgatt 2212
||||||||||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct: 512 tagcacttgtgtgctagcctaaattgtaatcttgcaaaagttggtgcatagctgatt 568
>gb|CW158750.1|CW158750 104_564_11148983_116_36395_086 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11148983, DNA
sequence
Length = 740
Score = 355 bits (179), Expect = 1e-095
Identities = 249/272 (91%), Gaps = 4/272 (1%)
Strand = Plus / Minus
Query: 204 cgatgaaaggaaagagagcagatctgatgcagacaactcagaaggagataagaagactaa 263
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 740 cgatgaaaggaaagagagcagatctgatgcagacacttcagaaggagataagaagactaa 681
Query: 264 gattgggtctttcaagaaaaaagcaattaatgcggggaacaaattcaggcattccttgag 323
|| || |||||||||||||||||||| ||||| || |||||||||||||||||| ||||
Sbjct: 680 aatcggatctttcaagaaaaaagcaatcaatgcagg-aacaaattcaggcattccctgag 622
Query: 324 aaggagaagcnnnnnnnngaccgaaaggggggattccatcaaggacataagggacgttaa 383
|||||||||| || ||||||||||| ||||||||||||||||||||||||||
Sbjct: 621 aaggagaagcaaaaa---gaaagaaaggggggagtccatcaaggacataagggacgttaa 565
Query: 384 agagcttcaagatgttgagacattccgacaatgcttaattgatgaggatttgctgccacc 443
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 564 agagcttcaagatgttgagacatttcgacaatgcttaattgatgaggatttgctgccaca 505
Query: 444 acagcacgatgattatcacatgatgttaaggt 475
|||||| |||||||||||||||||||||||||
Sbjct: 504 acagcatgatgattatcacatgatgttaaggt 473
Score = 151 bits (76), Expect = 3e-034
Identities = 94/100 (94%)
Strand = Plus / Minus
Query: 472 aggttcctaaaagcacggaaatttgaagttgagaaagctaagagtatgtggtcagacatg 531
||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 236 aggttcctaaaagcaaggaaatttgaagttgagaaagctaagaatatgtggtcagacatg 177
Query: 532 atcaattggaggaaggaattcggagtcgacaaaatagagg 571
| || ||||||||||||||||| ||||||||||||||||
Sbjct: 176 cttaaatggaggaaggaattcggggtcgacaaaatagagg 137
Score = 61.9 bits (31), Expect = 2e-007
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 569 aggaatttgactacaccgagttagatgaagt 599
|||||||||||||||||||||||||||||||
Sbjct: 41 aggaatttgactacaccgagttagatgaagt 11
>gb|CD232222.1|CD232222 SS1_39_A03.b1_A012 Salt-stressed seedlings Sorghum bicolor cDNA clone
SS1_39_A03_A012 3', mRNA sequence
Length = 565
Score = 355 bits (179), Expect = 1e-095
Identities = 333/383 (86%), Gaps = 11/383 (2%)
Strand = Plus / Plus
Query: 1759 tcgatgctgagacggctcggtgagctggagggcagggtgcaggtgctcgagacgaagccg 1818
|||||||| ||||| || ||||||||||||| || |||||||||||| || || ||||||
Sbjct: 24 tcgatgctaagacgactaggtgagctggaggacaaggtgcaggtgcttgaaacaaagccg 83
Query: 1819 tccgagatgccgtttgagaaggaggagctgctcaacgcagccgtccgccgcgtggacgcg 1878
|| |||||||| ||||| ||||| || ||||||| |||||||||||||||||||| ||
Sbjct: 84 tctgagatgccatttgaaaaggaagaattgctcaatgcagccgtccgccgcgtggatgca 143
Query: 1879 ctggaagccgagctgatctccacgaagaaggccctttacgatgctctgatgcgacaggat 1938
||||||| ||| |||| ||||| |||||||||||||| |||||| ||||||||||||||
Sbjct: 144 ttggaagctgagttgatttccacaaagaaggccctttatgatgctttgatgcgacaggat 203
Query: 1939 gagctgctcgcgtacattgacaggcaggagctgatcaagttccgtaaaaagaagttctgc 1998
||||| ||||| ||||||||||||||| |||||||||| || ||||||||||||||||||
Sbjct: 204 gagctactcgcatacattgacaggcagcagctgatcaaatttcgtaaaaagaagttctgc 263
Query: 1999 ttctaagatctgaccatggagcagctggtcatgtccggagccgttcgtgtatattgttgg 2058
||||||| | ||||| ||||||||||| |||||||||||||||||||||||||||| |
Sbjct: 264 ttctaaggtttgaccgtggagcagctgttcatgtccggagccgttcgtgtatattg---g 320
Query: 2059 atcgcggctagtacggtgaatgatgtaatgtgtccatctgtacaagtgtgtaacggaacg 2118
|| ||||||| || | |||||| ||||||||||||||||| ||||||||||| |
Sbjct: 321 attgcggctaatatgttgaatg---taatgtgtccatctgtagaagtgtgtaacag---- 373
Query: 2119 gtgtaagtatagtaggaaaacaa 2141
||||||||||||||||||||||
Sbjct: 374 -tgtaagtatagtaggaaaacaa 395
Score = 83.8 bits (42), Expect = 7e-014
Identities = 54/57 (94%), Gaps = 2/57 (3%)
Strand = Plus / Plus
Query: 2158 tagcacttgtgtgctagcctaaattgtaatcttgc--aagtcggtgcatagctgatt 2212
||||||||||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct: 501 tagcacttgtgtgctagcctaaattgtaatcttgcaaaagttggtgcatagctgatt 557
>gb|CF431106.1|CF431106 NIT1_6_D07.b1_A002 Nitrogen-deficient seedlings Sorghum bicolor cDNA
clone NIT1_6_D07_A002 3', mRNA sequence
Length = 549
Score = 355 bits (179), Expect = 1e-095
Identities = 333/383 (86%), Gaps = 11/383 (2%)
Strand = Plus / Plus
Query: 1759 tcgatgctgagacggctcggtgagctggagggcagggtgcaggtgctcgagacgaagccg 1818
|||||||| ||||| || ||||||||||||| || |||||||||||| || || ||||||
Sbjct: 20 tcgatgctaagacgactaggtgagctggaggccaaggtgcaggtgcttgaaacaaagccg 79
Query: 1819 tccgagatgccgtttgagaaggaggagctgctcaacgcagccgtccgccgcgtggacgcg 1878
|| |||||||| ||||| ||||| || ||||||| |||||||||||||||||||| ||
Sbjct: 80 tctgagatgccatttgaaaaggaagaattgctcaatgcagccgtccgccgcgtggatgca 139
Query: 1879 ctggaagccgagctgatctccacgaagaaggccctttacgatgctctgatgcgacaggat 1938
||||||| ||| |||| ||||| |||||||||||||| |||||| ||||||||||||||
Sbjct: 140 ttggaagctgagttgatttccacaaagaaggccctttatgatgctttgatgcgacaggat 199
Query: 1939 gagctgctcgcgtacattgacaggcaggagctgatcaagttccgtaaaaagaagttctgc 1998
||||| ||||| ||||||||||||||| |||||||||| || ||||||||||||||||||
Sbjct: 200 gagctactcgcatacattgacaggcagcagctgatcaaatttcgtaaaaagaagttctgc 259
Query: 1999 ttctaagatctgaccatggagcagctggtcatgtccggagccgttcgtgtatattgttgg 2058
||||||| | ||||| ||||||||||| |||||||||||||||||||||||||||| |
Sbjct: 260 ttctaaggtttgaccgtggagcagctgttcatgtccggagccgttcgtgtatattg---g 316
Query: 2059 atcgcggctagtacggtgaatgatgtaatgtgtccatctgtacaagtgtgtaacggaacg 2118
|| ||||||| || | |||||| ||||||||||||||||| ||||||||||| |
Sbjct: 317 attgcggctaatatgttgaatg---taatgtgtccatctgtagaagtgtgtaacag---- 369
Query: 2119 gtgtaagtatagtaggaaaacaa 2141
||||||||||||||||||||||
Sbjct: 370 -tgtaagtatagtaggaaaacaa 391
Score = 75.8 bits (38), Expect = 2e-011
Identities = 50/53 (94%), Gaps = 2/53 (3%)
Strand = Plus / Plus
Query: 2158 tagcacttgtgtgctagcctaaattgtaatcttgc--aagtcggtgcatagct 2208
||||||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct: 497 tagcacttgtgtgctagcctaaattgtaatcttgcaaaagttggtgcatagct 549
>gb|CD425054.1|CD425054 SA1_10_D09.b1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_10_D09_A002 3', mRNA sequence
Length = 577
Score = 351 bits (177), Expect = 2e-094
Identities = 358/417 (85%), Gaps = 11/417 (2%)
Strand = Plus / Plus
Query: 1725 tgccccgtcctacacggagaaggacgtgctctcgtcgatgctgagacggctcggtgagct 1784
|||||| ||||| || || ||||| || || || |||||||| ||||| || ||||||||
Sbjct: 1 tgccccatcctatacagaaaaggatgtactttcatcgatgctaagacgactaggtgagct 60
Query: 1785 ggagggcagggtgcaggtgctcgagacgaagccgtccgagatgccgtttgagaaggagga 1844
||||| || |||||||||||| || || |||||||| |||||||| ||||| ||||| ||
Sbjct: 61 ggaggacaaggtgcaggtgcttgaaacaaagccgtctgagatgccatttgaaaaggaaga 120
Query: 1845 gctgctcaacgcagccgtccgccgcgtggacgcgctggaagccgagctgatctccacgaa 1904
||||||| |||||||||||||||||||| || ||||||| ||| |||| ||||| ||
Sbjct: 121 attgctcaatgcagccgtccgccgcgtggatgcattggaagctgagttgatttccacaaa 180
Query: 1905 gaaggccctttacgatgctctgatgcgacaggatgagctgctcgcgtacattgacaggca 1964
|||||||||||| |||||| ||||||||||||||||||| ||||| ||||||||||||||
Sbjct: 181 gaaggccctttatgatgctttgatgcgacaggatgagctactcgcatacattgacaggca 240
Query: 1965 ggagctgatcaagttccgtaaaaagaagttctgcttctaagatctgaccatggagcagct 2024
| |||||||||| || |||||||||||||||||||| |||| | ||||| ||||||||||
Sbjct: 241 gcagctgatcaaatttcgtaaaaagaagttctgcttttaaggtttgaccgtggagcagct 300
Query: 2025 ggtcatgtccggagccgttcgtgtatattgttggatcgcggctagtacggtgaatgatgt 2084
| |||||||||||||||||||||||||||| ||| ||||||| || | |||||| |
Sbjct: 301 gttcatgtccggagccgttcgtgtatattg---gattgcggctaatatgttgaatg---t 354
Query: 2085 aatgtgtccatctgtacaagtgtgtaacggaacggtgtaagtatagtaggaaaacaa 2141
|||||||||||||||| ||||||||||| | ||||||||||||||||||||||
Sbjct: 355 aatgtgtccatctgtagaagtgtgtaacag-----tgtaagtatagtaggaaaacaa 406
Score = 54.0 bits (27), Expect = 6e-005
Identities = 52/58 (89%), Gaps = 3/58 (5%)
Strand = Plus / Plus
Query: 2158 tagcacttgtgtgctagcc-taaattgtaatcttgcaa--gtcggtgcatagctgatt 2212
|||||||||||||||| || |||| ||||||||||||| || |||||||||||||||
Sbjct: 513 tagcacttgtgtgctacccataaactgtaatcttgcaaaagttggtgcatagctgatt 570
>gb|BG557015.1|BG557015 EM1_41_E06.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA sequence
Length = 566
Score = 347 bits (175), Expect = 3e-093
Identities = 332/383 (86%), Gaps = 11/383 (2%)
Strand = Plus / Plus
Query: 1759 tcgatgctgagacggctcggtgagctggagggcagggtgcaggtgctcgagacgaagccg 1818
|||||||| ||||| || ||||||||||||| || |||||||||||| || || ||||||
Sbjct: 33 tcgatgctaagacgactaggtgagctggaggacaaggtgcaggtgcttgaaacaaagccg 92
Query: 1819 tccgagatgccgtttgagaaggaggagctgctcaacgcagccgtccgccgcgtggacgcg 1878
|| |||||||| ||||| ||||| || ||||||| |||||||||||||||||||| ||
Sbjct: 93 tctgagatgccatttgaaaaggaagaattgctcaatgcagccgtccgccgcgtggatgca 152
Query: 1879 ctggaagccgagctgatctccacgaagaaggccctttacgatgctctgatgcgacaggat 1938
||||||| ||| |||| ||||| |||||||||||||| |||||| ||||||||||||||
Sbjct: 153 ttggaagctgagttgatttccacaaagaaggccctttatgatgctttgatgcgacaggat 212
Query: 1939 gagctgctcgcgtacattgacaggcaggagctgatcaagttccgtaaaaagaagttctgc 1998
||||| ||||| ||||||||||||||| |||||||||| || ||||||||||||||||||
Sbjct: 213 gagctactcgcatacattgacaggcagcagctgatcaaatttcgtaaaaagaagttctgc 272
Query: 1999 ttctaagatctgaccatggagcagctggtcatgtccggagccgttcgtgtatattgttgg 2058
||||||| | ||||| ||||||||||| ||||||||||||||||||||||||| |||
Sbjct: 273 ttctaaggtttgaccgtggagcagctgttcatgtccggagccgttcgtgtata---ttgc 329
Query: 2059 atcgcggctagtacggtgaatgatgtaatgtgtccatctgtacaagtgtgtaacggaacg 2118
|| ||||||| || | ||| |||||||||||||||||||| |||||||| |||
Sbjct: 330 attgcggctaatatgttga---atgtaatgtgtccatctgtagaagtgtgt-----aaca 381
Query: 2119 gtgtaagtatagtaggaaaacaa 2141
|||||||||||||||||||||||
Sbjct: 382 gtgtaagtatagtaggaaaacaa 404
Score = 83.8 bits (42), Expect = 7e-014
Identities = 54/57 (94%), Gaps = 2/57 (3%)
Strand = Plus / Plus
Query: 2158 tagcacttgtgtgctagcctaaattgtaatcttgc--aagtcggtgcatagctgatt 2212
||||||||||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct: 510 tagcacttgtgtgctagcctaaattgtaatcttgcaaaagttggtgcatagctgatt 566
>gb|BF586716.1|BF586716 FM1_31_A03.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum propinquum
cDNA, mRNA sequence
Length = 392
Score = 341 bits (172), Expect = 2e-091
Identities = 333/384 (86%), Gaps = 12/384 (3%)
Strand = Plus / Plus
Query: 1759 tcgatgctgagacggctcggtgagctggagggcagggtgcaggtgctcgagacgaagccg 1818
|||||||| ||||| || ||||||||||||| || |||||||||||| || || ||||||
Sbjct: 18 tcgatgctaagacgactaggtgagctggaggacaaggtgcaggtgcttgaaacaaagccg 77
Query: 1819 tccgagatgccgtttgagaaggaggagctgctcaacgcagccgtccgccgcgtggacgcg 1878
|| |||||||| ||||| ||||| || ||||||| |||||||||||||||||||| ||
Sbjct: 78 tctgagatgccatttgaaaaggaagaattgctcaatgcagccgtccgccgcgtggatgca 137
Query: 1879 ctggaagccgagctgatctccacgaagaaggccctttacgatgctctgatgcgacaggat 1938
||||||| ||| |||| ||||| |||||||||||||| |||||| ||||||||||||||
Sbjct: 138 ttggaagctgagttgatttccacaaagaaggccctttatgatgctttgatgcgacaggat 197
Query: 1939 gagctgctcgcgtacattgacaggcaggagctgatcaagttccgtaaaaagaagttctgc 1998
||||| ||||| ||||||||||||||| |||||||||| || ||||||||||||||||||
Sbjct: 198 gagctactcgcatacattgacaggcagcagctgatcaaatttcgtaaaaagaagttctgc 257
Query: 1999 ttctaagatctgaccatggagcagctggtcatgtccggagccgttcgtgtatattgttgg 2058
||||||||| ||||| ||||||||||| ||||||||||||||||||||||||| ||||
Sbjct: 258 ttctaagatttgaccgtggagcagctgttcatgtccggagccgttcgtgtata---ttgg 314
Query: 2059 atcgcggc-tagtacggtgaatgatgtaatgtgtccatctgtacaagtgtgtaacggaac 2117
|| ||||| || || | ||| |||||| ||||||||||||| |||||||| |||
Sbjct: 315 attgcggcgtaatatgttga---atgtaacgtgtccatctgtagaagtgtgt-----aac 366
Query: 2118 ggtgtaagtatagtaggaaaacaa 2141
|||||||||||||||||||||||
Sbjct: 367 agtgtaagtatagtaggaaaacaa 390
>gb|CF770894.1|CF770894 DSBF1_11_B12.g1_A010 Drought-stressed before flowering Sorghum
bicolor cDNA clone DSBF1_11_B12_A010 3', mRNA sequence
Length = 573
Score = 339 bits (171), Expect = 7e-091
Identities = 331/383 (86%), Gaps = 11/383 (2%)
Strand = Plus / Plus
Query: 1759 tcgatgctgagacggctcggtgagctggagggcagggtgcaggtgctcgagacgaagccg 1818
|||||||| | ||| || ||||||||||||| || |||||||||||| || || ||||||
Sbjct: 20 tcgatgctaacacgactaggtgagctggaggacaaggtgcaggtgcttgaaacaaagccg 79
Query: 1819 tccgagatgccgtttgagaaggaggagctgctcaacgcagccgtccgccgcgtggacgcg 1878
|| |||||||| ||||| ||||| || ||||||| |||||||||||||||||||| ||
Sbjct: 80 tctgagatgccatttgaaaaggaagaattgctcaatgcagccgtccgccgcgtggatgca 139
Query: 1879 ctggaagccgagctgatctccacgaagaaggccctttacgatgctctgatgcgacaggat 1938
||||||| ||| |||| ||||| |||||||||||||| |||||| ||||||||||||||
Sbjct: 140 ttggaagctgagttgatttccacaaagaaggccctttatgatgctttgatgcgacaggat 199
Query: 1939 gagctgctcgcgtacattgacaggcaggagctgatcaagttccgtaaaaagaagttctgc 1998
||||| ||||| ||||||||||||||| |||||||||| || ||||||||||||||||||
Sbjct: 200 gagctactcgcatacattgacaggcagcagctgatcaaatttcgtaaaaagaagttctgc 259
Query: 1999 ttctaagatctgaccatggagcagctggtcatgtccggagccgttcgtgtatattgttgg 2058
||||||| | ||||| ||||||||||| ||||||||||||||||||||||||| ||||
Sbjct: 260 ttctaaggtttgaccgtggagcagctgttcatgtccggagccgttcgtgtata---ttgg 316
Query: 2059 atcgcggctagtacggtgaatgatgtaatgtgtccatctgtacaagtgtgtaacggaacg 2118
|| ||||||| || | ||| |||||||||||||||||||| |||||||| | |
Sbjct: 317 attgcggctaatatgttga---atgtaatgtgtccatctgtagaagtgtgt-----acca 368
Query: 2119 gtgtaagtatagtaggaaaacaa 2141
|||||||||||||||||||||||
Sbjct: 369 gtgtaagtatagtaggaaaacaa 391
Score = 83.8 bits (42), Expect = 7e-014
Identities = 54/57 (94%), Gaps = 2/57 (3%)
Strand = Plus / Plus
Query: 2158 tagcacttgtgtgctagcctaaattgtaatcttgc--aagtcggtgcatagctgatt 2212
||||||||||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct: 497 tagcacttgtgtgctagcctaaattgtaatcttgcaaaagttggtgcatagctgatt 553
>gb|BI074396.1|BI074396 IP1_14_A05.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 555
Score = 335 bits (169), Expect = 1e-089
Identities = 330/381 (86%), Gaps = 12/381 (3%)
Strand = Plus / Plus
Query: 1762 atgctgagacggctcggtgagctggagggcagggtgcaggtgctc-gagacgaagccgtc 1820
||||| ||||| || ||||||||||||| || |||||||||||| || || ||||||||
Sbjct: 1 atgctaagacgactaggtgagctggaggacaaggtgcaggtgctttgaaacaaagccgtc 60
Query: 1821 cgagatgccgtttgagaaggaggagctgctcaacgcagccgtccgccgcgtggacgcgct 1880
|||||||| ||||| ||||| || ||||||| |||||||||||||||||||| || |
Sbjct: 61 tgagatgccatttgaaaaggaagaattgctcaatgcagccgtccgccgcgtggatgcatt 120
Query: 1881 ggaagccgagctgatctccacgaagaaggccctttacgatgctctgatgcgacaggatga 1940
|||||| ||| |||| ||||| |||||||||||||| |||||| ||||||||||||||||
Sbjct: 121 ggaagctgagttgatttccacaaagaaggccctttatgatgctttgatgcgacaggatga 180
Query: 1941 gctgctcgcgtacattgacaggcaggagctgatcaagttccgtaaaaagaagttctgctt 2000
||| ||||| ||||||||||||||| |||||||||| || ||||||||||||||||||||
Sbjct: 181 gctactcgcatacattgacaggcagcagctgatcaaatttcgtaaaaagaagttctgctt 240
Query: 2001 ctaagatctgaccatggagcagctggtcatgtccggagccgttcgtgtatattgttggat 2060
||||| | ||||| ||||||||||| |||||||||||||||||||||||||||| |||
Sbjct: 241 ctaaggtttgaccgtggagcagctgttcatgtccggagccgttcgtgtatattg---gat 297
Query: 2061 cgcggctagtacggtgaatgatgtaatgtgtccatctgtacaagtgtgtaacggaacggt 2120
||||||| || | |||||| ||||||||||||||||| ||||||||||| | |
Sbjct: 298 tgcggctaatatgttgaatg---taatgtgtccatctgtagaagtgtgtaacag-----t 349
Query: 2121 gtaagtatagtaggaaaacaa 2141
|||||||||||||||||||||
Sbjct: 350 gtaagtatagtaggaaaacaa 370
Score = 83.8 bits (42), Expect = 7e-014
Identities = 54/57 (94%), Gaps = 2/57 (3%)
Strand = Plus / Plus
Query: 2158 tagcacttgtgtgctagcctaaattgtaatcttgc--aagtcggtgcatagctgatt 2212
||||||||||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct: 476 tagcacttgtgtgctagcctaaattgtaatcttgcaaaagttggtgcatagctgatt 532
>gb|BI211702.1|BI211702 IP1_60_H02.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 493
Score = 301 bits (152), Expect = 2e-079
Identities = 279/320 (87%), Gaps = 11/320 (3%)
Strand = Plus / Plus
Query: 1822 gagatgccgtttgagaaggaggagctgctcaacgcagccgtccgccgcgtggacgcgctg 1881
|||||||| ||||| ||||| || ||||||| |||||||||||||||||||| || ||
Sbjct: 3 gagatgccatttgaaaaggaagaattgctcaatgcagccgtccgccgcgtggatgcattg 62
Query: 1882 gaagccgagctgatctccacgaagaaggccctttacgatgctctgatgcgacaggatgag 1941
||||| ||| |||| ||||| |||||||||||||| |||||| |||||||||||||||||
Sbjct: 63 gaagctgagttgatttccacaaagaaggccctttatgatgctttgatgcgacaggatgag 122
Query: 1942 ctgctcgcgtacattgacaggcaggagctgatcaagttccgtaaaaagaagttctgcttc 2001
|| ||||| ||||||||||||||| |||||||||| || |||||||||||||||||||||
Sbjct: 123 ctactcgcatacattgacaggcagcagctgatcaaatttcgtaaaaagaagttctgcttc 182
Query: 2002 taagatctgaccatggagcagctggtcatgtccggagccgttcgtgtatattgttggatc 2061
|||| | ||||| ||||||||||| |||||||||||||||||||||||||||| |||
Sbjct: 183 taaggtttgaccgtggagcagctgttcatgtccggagccgttcgtgtatattg---gatt 239
Query: 2062 gcggctagtacggtgaatgatgtaatgtgtccatctgtacaagtgtgtaacggaacggtg 2121
||||||| || | |||||| ||||||||||||||||| ||||||||||| | ||
Sbjct: 240 gcggctaatatgttgaatg---taatgtgtccatctgtagaagtgtgtaacag-----tg 291
Query: 2122 taagtatagtaggaaaacaa 2141
||||||||||||||||||||
Sbjct: 292 taagtatagtaggaaaacaa 311
Score = 83.8 bits (42), Expect = 7e-014
Identities = 54/57 (94%), Gaps = 2/57 (3%)
Strand = Plus / Plus
Query: 2158 tagcacttgtgtgctagcctaaattgtaatcttgc--aagtcggtgcatagctgatt 2212
||||||||||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct: 417 tagcacttgtgtgctagcctaaattgtaatcttgcaaaagttggtgcatagctgatt 473
>gb|CF428414.1|CF428414 PH1_15_G10.b1_A002 Phosphorous-deficient seedlings Sorghum bicolor
cDNA clone PH1_15_G10_A002 3', mRNA sequence
Length = 477
Score = 301 bits (152), Expect = 2e-079
Identities = 279/320 (87%), Gaps = 11/320 (3%)
Strand = Plus / Plus
Query: 1822 gagatgccgtttgagaaggaggagctgctcaacgcagccgtccgccgcgtggacgcgctg 1881
|||||||| ||||| ||||| || ||||||| |||||||||||||||||||| || ||
Sbjct: 1 gagatgccatttgaaaaggaagaattgctcaatgcagccgtccgccgcgtggatgcattg 60
Query: 1882 gaagccgagctgatctccacgaagaaggccctttacgatgctctgatgcgacaggatgag 1941
||||| ||| |||| ||||| |||||||||||||| |||||| |||||||||||||||||
Sbjct: 61 gaagctgagttgatttccacaaagaaggccctttatgatgctttgatgcgacaggatgag 120
Query: 1942 ctgctcgcgtacattgacaggcaggagctgatcaagttccgtaaaaagaagttctgcttc 2001
|| ||||| ||||||||||||||| |||||||||| || |||||||||||||||||||||
Sbjct: 121 ctactcgcatacattgacaggcagcagctgatcaaatttcgtaaaaagaagttctgcttc 180
Query: 2002 taagatctgaccatggagcagctggtcatgtccggagccgttcgtgtatattgttggatc 2061
|||| | ||||| ||||||||||| |||||||||||||||||||||||||||| |||
Sbjct: 181 taaggtttgaccgtggagcagctgttcatgtccggagccgttcgtgtatattg---gatt 237
Query: 2062 gcggctagtacggtgaatgatgtaatgtgtccatctgtacaagtgtgtaacggaacggtg 2121
||||||| || | |||||| ||||||||||||||||| ||||||||||| | ||
Sbjct: 238 gcggctaatatgttgaatg---taatgtgtccatctgtagaagtgtgtaacag-----tg 289
Query: 2122 taagtatagtaggaaaacaa 2141
||||||||||||||||||||
Sbjct: 290 taagtatagtaggaaaacaa 309
Score = 75.8 bits (38), Expect = 2e-011
Identities = 53/57 (92%), Gaps = 2/57 (3%)
Strand = Plus / Plus
Query: 2158 tagcacttgtgtgctagcctaaattgtaatcttgc--aagtcggtgcatagctgatt 2212
||||||||||||||||||||||||||||||||||| |||| |||||||||| ||||
Sbjct: 415 tagcacttgtgtgctagcctaaattgtaatcttgcaaaagttggtgcatagcagatt 471
>gb|CL172560.1|CL172560 104_375_10890248_116_31797_152 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10890248, DNA
sequence
Length = 747
Score = 178 bits (90), Expect = 2e-042
Identities = 102/106 (96%)
Strand = Plus / Plus
Query: 914 agacactgtgccggatgtatataattaatgctggccaaggcttcaagatgttatggagca 973
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 317 agacactgtgccggatgtatataattaatgctggccaaggcttcaagatgctatggagca 376
Query: 974 caataaaatcattcctcgatccaaaaactgcttccaagatccatgt 1019
|||||||||||||||| ||||||||||||| ||||||||| |||||
Sbjct: 377 caataaaatcattccttgatccaaaaactgtttccaagattcatgt 422
Score = 157 bits (79), Expect = 6e-036
Identities = 91/95 (95%)
Strand = Plus / Plus
Query: 1067 gtgaactgccagaatttcttggtggcaaatgcaattgtattgaaggttgccaaagatctg 1126
||||| ||||||||||| | |||||||||||||| |||||||||||||||||||||||||
Sbjct: 649 gtgaattgccagaatttttcggtggcaaatgcaactgtattgaaggttgccaaagatctg 708
Query: 1127 acaaaggtccttggaaggatcccaacataataaag 1161
|||||||||||||||||||||||||||||||||||
Sbjct: 709 acaaaggtccttggaaggatcccaacataataaag 743
Score = 141 bits (71), Expect = 3e-031
Identities = 77/79 (97%)
Strand = Plus / Plus
Query: 837 gggtttcaagaacttctcgaaatctgccagagaattaatcacacgattacagaagatcga 896
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct: 55 gggtttcaagaacttctcgaaatctgccagggaattaatcacacgattacagaagattga 114
Query: 897 cagtgataactacccagag 915
|||||||||||||||||||
Sbjct: 115 cagtgataactacccagag 133
Score = 91.7 bits (46), Expect = 3e-016
Identities = 49/50 (98%)
Strand = Plus / Plus
Query: 1018 gttcttgggaataagtatcaacataagttgctcgaaataattgacgagtg 1067
||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 524 gttcttgggaataagtaccaacataagttgctcgaaataattgacgagtg 573
>gb|CL172561.1|CL172561 104_375_10890248_148_31796_152 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10890248, DNA
sequence
Length = 776
Score = 178 bits (90), Expect = 2e-042
Identities = 102/106 (96%)
Strand = Plus / Minus
Query: 914 agacactgtgccggatgtatataattaatgctggccaaggcttcaagatgttatggagca 973
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 508 agacactgtgccggatgtatataattaatgctggccaaggcttcaagatgctatggagca 449
Query: 974 caataaaatcattcctcgatccaaaaactgcttccaagatccatgt 1019
|||||||||||||||| ||||||||||||| ||||||||| |||||
Sbjct: 448 caataaaatcattccttgatccaaaaactgtttccaagattcatgt 403
Score = 149 bits (75), Expect = 1e-033
Identities = 90/95 (94%)
Strand = Plus / Minus
Query: 1067 gtgaactgccagaatttcttggtggcaaatgcaattgtattgaaggttgccaaagatctg 1126
||||| ||||||||||| | |||||||||||||| |||||||||||||||||||||||||
Sbjct: 176 gtgaattgccagaatttttcggtggcaaatgcaactgtattgaaggttgccaaagatctg 117
Query: 1127 acaaaggtccttggaaggatcccaacataataaag 1161
||||||||||| |||||||||||||||||||||||
Sbjct: 116 acaaaggtcctaggaaggatcccaacataataaag 82
Score = 141 bits (71), Expect = 3e-031
Identities = 77/79 (97%)
Strand = Plus / Minus
Query: 837 gggtttcaagaacttctcgaaatctgccagagaattaatcacacgattacagaagatcga 896
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct: 770 gggtttcaagaacttctcgaaatctgccagggaattaatcacacgattacagaagattga 711
Query: 897 cagtgataactacccagag 915
|||||||||||||||||||
Sbjct: 710 cagtgataactacccagag 692
Score = 91.7 bits (46), Expect = 3e-016
Identities = 49/50 (98%)
Strand = Plus / Minus
Query: 1018 gttcttgggaataagtatcaacataagttgctcgaaataattgacgagtg 1067
||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 301 gttcttgggaataagtaccaacataagttgctcgaaataattgacgagtg 252
>gb|CW170531.1|CW170531 104_581_11155255_148_36518_032 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11155255, DNA
sequence
Length = 675
Score = 139 bits (70), Expect = 1e-030
Identities = 137/158 (86%), Gaps = 11/158 (6%)
Strand = Plus / Minus
Query: 1984 aaaaagaagttctgcttctaagatctgaccatggagcagctggtcatgtccggagccgtt 2043
|||||||||||||||||||||| | ||||| ||||||||||| |||||||||||||||||
Sbjct: 396 aaaaagaagttctgcttctaaggtttgaccgtggagcagctgttcatgtccggagccgtt 337
Query: 2044 cgtgtatattgttggatcgcggctagtacggtgaatgatgtaatgtgtccatctgtacaa 2103
||||||||||| ||| ||||||| || | |||||| ||||||||||||||||| ||
Sbjct: 336 cgtgtatattg---gattgcggctaatatgttgaatg---taatgtgtccatctgtagaa 283
Query: 2104 gtgtgtaacggaacggtgtaagtatagtaggaaaacaa 2141
||||||||| | ||||||||||||||||||||||
Sbjct: 282 gtgtgtaacag-----tgtaagtatagtaggaaaacaa 250
Score = 99.6 bits (50), Expect = 1e-018
Identities = 65/70 (92%)
Strand = Plus / Minus
Query: 1907 aggccctttacgatgctctgatgcgacaggatgagctgctcgcgtacattgacaggcagg 1966
|||||||||| |||||| ||||||||||||||||||| ||||| |||||||||||||||
Sbjct: 580 aggccctttatgatgctttgatgcgacaggatgagctactcgcatacattgacaggcagc 521
Query: 1967 agctgatcaa 1976
||||||||||
Sbjct: 520 agctgatcaa 511
Score = 83.8 bits (42), Expect = 7e-014
Identities = 54/57 (94%), Gaps = 2/57 (3%)
Strand = Plus / Minus
Query: 2158 tagcacttgtgtgctagcctaaattgtaatcttgc--aagtcggtgcatagctgatt 2212
||||||||||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct: 144 tagcacttgtgtgctagcctaaattgtaatcttgcaaaagttggtgcatagctgatt 88
>gb|CW488399.1|CW488399 fsbb001f254m14k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f254m14, DNA
sequence
Length = 784
Score = 139 bits (70), Expect = 1e-030
Identities = 137/158 (86%), Gaps = 11/158 (6%)
Strand = Plus / Plus
Query: 1984 aaaaagaagttctgcttctaagatctgaccatggagcagctggtcatgtccggagccgtt 2043
|||||||||||||||||||||| | ||||| ||||||||||| |||||||||||||||||
Sbjct: 557 aaaaagaagttctgcttctaaggtttgaccgtggagcagctgttcatgtccggagccgtt 616
Query: 2044 cgtgtatattgttggatcgcggctagtacggtgaatgatgtaatgtgtccatctgtacaa 2103
||||||||||| ||| ||||||| || | |||||| ||||||||||||||||| ||
Sbjct: 617 cgtgtatattg---gattgcggctaatatgttgaatg---taatgtgtccatctgtagaa 670
Query: 2104 gtgtgtaacggaacggtgtaagtatagtaggaaaacaa 2141
||||||||| | ||||||||||||||||||||||
Sbjct: 671 gtgtgtaacag-----tgtaagtatagtaggaaaacaa 703
Score = 125 bits (63), Expect = 2e-026
Identities = 129/151 (85%)
Strand = Plus / Plus
Query: 1759 tcgatgctgagacggctcggtgagctggagggcagggtgcaggtgctcgagacgaagccg 1818
|||||||| ||||| || ||||||||||||| || |||||||||||| || || ||||||
Sbjct: 5 tcgatgctaagacgactaggtgagctggaggacaaggtgcaggtgcttgaaacaaagccg 64
Query: 1819 tccgagatgccgtttgagaaggaggagctgctcaacgcagccgtccgccgcgtggacgcg 1878
|| |||||||| ||||| ||||| || ||||||| |||||||||||||||||||| ||
Sbjct: 65 tctgagatgccatttgaaaaggaagaattgctcaatgcagccgtccgccgcgtggatgca 124
Query: 1879 ctggaagccgagctgatctccacgaagaagg 1909
||||||| ||| |||| ||||| |||||||
Sbjct: 125 ttggaagctgagttgatttccacaaagaagg 155
Score = 99.6 bits (50), Expect = 1e-018
Identities = 65/70 (92%)
Strand = Plus / Plus
Query: 1907 aggccctttacgatgctctgatgcgacaggatgagctgctcgcgtacattgacaggcagg 1966
|||||||||| |||||| ||||||||||||||||||| ||||| |||||||||||||||
Sbjct: 373 aggccctttatgatgctttgatgcgacaggatgagctactcgcatacattgacaggcagc 432
Query: 1967 agctgatcaa 1976
||||||||||
Sbjct: 433 agctgatcaa 442
>gb|BZ335057.1|BZ335057 hx95c03.b1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone hx95c03 5', DNA sequence
Length = 656
Score = 105 bits (53), Expect = 2e-020
Identities = 83/93 (89%)
Strand = Plus / Plus
Query: 90 caggcgattctgagctcgggttttgttccggggacggattcctgtgccggcggacgggat 149
|||| ||||||||||| ||| |||||||||||| | ||||| | | |||||||||||||
Sbjct: 14 caggggattctgagcttggggtttgttccgggggccgattctgggggcggcggacgggat 73
Query: 150 gtcaggccctctcgaccgatttgctaggccatg 182
||||||||| |||||||||||||||||||||||
Sbjct: 74 gtcaggccccctcgaccgatttgctaggccatg 106
>gb|CW218593.1|CW218593 104_652_11196272_116_37532_028 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11196272, DNA
sequence
Length = 667
Score = 105 bits (53), Expect = 2e-020
Identities = 83/93 (89%)
Strand = Plus / Minus
Query: 90 caggcgattctgagctcgggttttgttccggggacggattcctgtgccggcggacgggat 149
|||| ||||||||||| ||| |||||||||||| | ||||| | | |||||||||||||
Sbjct: 260 caggggattctgagcttggggtttgttccgggggccgattctgggggcggcggacgggat 201
Query: 150 gtcaggccctctcgaccgatttgctaggccatg 182
||||||||| |||||||||||||||||||||||
Sbjct: 200 gtcaggccccctcgaccgatttgctaggccatg 168
>gb|BG556061.1|BG556061 EM1_66_B10.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 180
Score = 103 bits (52), Expect = 7e-020
Identities = 127/152 (83%)
Strand = Plus / Plus
Query: 448 cacgatgattatcacatgatgttaaggttcctaaaagcacggaaatttgaagttgagaaa 507
|||||||||||||||| |||||| |||||||| |||||| |||||||| | |||| ||
Sbjct: 9 cacgatgattatcacacgatgttgaggttcctgaaagcaaggaaatttaatattgactaa 68
Query: 508 gctaagagtatgtggtcagacatgatcaattggaggaaggaattcggagtcgacaaaata 567
|| ||| |||||||||||| ||| | | |||| ||||||||| || | ||||| |||
Sbjct: 69 gcaaagcatatgtggtcagagatgcttagatggatgaaggaatttggtgctgacaatata 128
Query: 568 gaggaatttgactacaccgagttagatgaagt 599
|| ||||||||||||||||| |||||||||||
Sbjct: 129 gatgaatttgactacaccgaattagatgaagt 160
>gb|BZ343010.1|BZ343010 ho32g10.b1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone ho32g10 5', DNA sequence
Length = 606
Score = 95.6 bits (48), Expect = 2e-017
Identities = 63/68 (92%)
Strand = Plus / Plus
Query: 940 aatgctggccaaggcttcaagatgttatggagcacaataaaatcattcctcgatccaaaa 999
|||||||||||||||||||||||||||||| | |||||||||||||| || |||||| ||
Sbjct: 434 aatgctggccaaggcttcaagatgttatggggtacaataaaatcatttcttgatccagaa 493
Query: 1000 actgcttc 1007
||||||||
Sbjct: 494 actgcttc 501
>gb|CW158751.1|CW158751 104_564_11148983_148_36396_086 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11148983, DNA
sequence
Length = 685
Score = 93.7 bits (47), Expect = 7e-017
Identities = 74/83 (89%)
Strand = Plus / Plus
Query: 100 tgagctcgggttttgttccggggacggattcctgtgccggcggacgggatgtcaggccct 159
|||||| ||| |||||||||||| | ||||| | | ||||||||||||||||||||||
Sbjct: 1 tgagcttggggtttgttccgggggccgattctgggggcggcggacgggatgtcaggcccc 60
Query: 160 ctcgaccgatttgctaggccatg 182
|||||||||||||||||||||||
Sbjct: 61 ctcgaccgatttgctaggccatg 83
>gb|BM328897.1|BM328897 PIC1_31_A03.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 253
Score = 83.8 bits (42), Expect = 7e-014
Identities = 54/57 (94%), Gaps = 2/57 (3%)
Strand = Plus / Plus
Query: 2158 tagcacttgtgtgctagcctaaattgtaatcttgc--aagtcggtgcatagctgatt 2212
||||||||||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct: 190 tagcacttgtgtgctagcctaaattgtaatcttgcaaaagttggtgcatagctgatt 246
Score = 65.9 bits (33), Expect = 2e-008
Identities = 54/61 (88%), Gaps = 5/61 (8%)
Strand = Plus / Plus
Query: 2081 atgtaatgtgtccatctgtacaagtgtgtaacggaacggtgtaagtatagtaggaaaaca 2140
|||||||||||||||||||| ||||||||||| | |||||||||||||||||||||
Sbjct: 29 atgtaatgtgtccatctgtagaagtgtgtaacag-----tgtaagtatagtaggaaaaca 83
Query: 2141 a 2141
|
Sbjct: 84 a 84
>gb|CW132225.1|CW132225 104_515_11116096_148_34793_056 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11116096, DNA
sequence
Length = 553
Score = 81.8 bits (41), Expect = 3e-013
Identities = 101/121 (83%)
Strand = Plus / Plus
Query: 718 tatgtaaaataccatgtcaaagaatttgagaagtgcttccagatgaaatttccagcttgc 777
||||||||||| |||||||| || ||||||| || ||||||||| |||||||||||
Sbjct: 60 tatgtaaaatatcatgtcaaggagtttgagagatgtctccagatgaggtttccagcttgt 119
Query: 778 accattgctgctaaaaagcacatagattcgtccactactattttggatgtgcaaggcgtg 837
| |||||||| |||| ||||||||| || || ||||| || ||||||||| ||||||||
Sbjct: 120 tctattgctgcgaaaaggcacatagactcatctactacgatattggatgtgaaaggcgtg 179
Query: 838 g 838
|
Sbjct: 180 g 180
>gb|BF587086.1|BF587086 FM1_32_A09.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum propinquum
cDNA, mRNA sequence
Length = 550
Score = 65.9 bits (33), Expect = 2e-008
Identities = 90/109 (82%)
Strand = Plus / Plus
Query: 985 ttcctcgatccaaaaactgcttccaagatccatgttcttgggaataagtatcaacataag 1044
||||| ||||| |||||| | ||||||| |||||||||||||| || || ||| ||||
Sbjct: 115 ttccttgatcccaaaactaccgccaagatacatgttcttgggaacaaataccaaagtaag 174
Query: 1045 ttgctcgaaataattgacgagtgtgaactgccagaatttcttggtggca 1093
|||| ||||||||||||| ||||| |||| ||||| ||||||||||
Sbjct: 175 ctgcttgaaataattgacgctagtgaattgccggaattccttggtggca 223
>gb|BZ344349.1|BZ344349 hp62g02.b2 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone hp62g02 5', DNA sequence
Length = 526
Score = 61.9 bits (31), Expect = 2e-007
Identities = 79/95 (83%)
Strand = Plus / Minus
Query: 712 gatcggtatgtaaaataccatgtcaaagaatttgagaagtgcttccagatgaaatttcca 771
||||||||||| |||||||||||| || ||||||| | ||||| ||| |||||||||
Sbjct: 371 gatcggtatgtgcgataccatgtcaaggagtttgagaggagcttcttgattaaatttcca 312
Query: 772 gcttgcaccattgctgctaaaaagcacatagattc 806
|||||| | ||||||| |||| |||||| |||||
Sbjct: 311 gcttgctctcttgctgcaaaaaggcacattgattc 277
>gb|BZ348905.1|BZ348905 hp62g02.g2 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone hp62g02 5', DNA sequence
Length = 731
Score = 61.9 bits (31), Expect = 2e-007
Identities = 79/95 (83%)
Strand = Plus / Plus
Query: 712 gatcggtatgtaaaataccatgtcaaagaatttgagaagtgcttccagatgaaatttcca 771
||||||||||| |||||||||||| || ||||||| | ||||| ||| |||||||||
Sbjct: 525 gatcggtatgtgcgataccatgtcaaggagtttgagaggagcttcttgattaaatttcca 584
Query: 772 gcttgcaccattgctgctaaaaagcacatagattc 806
|||||| | ||||||| |||| |||||| |||||
Sbjct: 585 gcttgctctcttgctgcaaaaaggcacattgattc 619
>gb|BZ335058.1|BZ335058 hx95c03.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone hx95c03 5', DNA sequence
Length = 544
Score = 58.0 bits (29), Expect = 4e-006
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 184 tttgaagggtttgtacataacgatgaaaggaaa 216
|||||||||||||| ||||||||||||||||||
Sbjct: 33 tttgaagggtttgtgcataacgatgaaaggaaa 1
>gb|CW046982.1|CW046982 104_284_10512470_115_30220 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10512470, DNA
sequence
Length = 408
Score = 50.1 bits (25), Expect = 0.001
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 1067 gtgaactgccagaatttcttggtggcaaatgca 1099
||||||| |||||||||||||||||||| ||||
Sbjct: 233 gtgaactcccagaatttcttggtggcaagtgca 265
>gb|CW132224.1|CW132224 104_515_11116096_116_34797_056 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11116096, DNA
sequence
Length = 605
Score = 50.1 bits (25), Expect = 0.001
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 1067 gtgaactgccagaatttcttggtggcaaatgca 1099
||||||| |||||||||||||||||||| ||||
Sbjct: 599 gtgaactcccagaatttcttggtggcaagtgca 567
>gb|CW463198.1|CW463198 fsbb001f211l01f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f211l01, DNA
sequence
Length = 767
Score = 50.1 bits (25), Expect = 0.001
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 1067 gtgaactgccagaatttcttggtggcaaatgca 1099
||||||| |||||||||||||||||||| ||||
Sbjct: 170 gtgaactcccagaatttcttggtggcaagtgca 202
>gb|CW256325.1|CW256325 104_721_11226727_116_35138_026 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11226727, DNA
sequence
Length = 671
Score = 48.1 bits (24), Expect = 0.004
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 984 attcctcgatccaaaaactgcttccaagatccatgt 1019
|||||| || ||||||||| ||||||||||||||||
Sbjct: 86 attccttgacccaaaaacttcttccaagatccatgt 121
>gb|CW388130.1|CW388130 fsbb001f072m07f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f072m07, DNA
sequence
Length = 687
Score = 48.1 bits (24), Expect = 0.004
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 984 attcctcgatccaaaaactgcttccaagatccatgt 1019
|||||| || ||||||||| ||||||||||||||||
Sbjct: 519 attccttgacccaaaaacttcttccaagatccatgt 554
>gb|CL186237.1|CL186237 104_400_10900077_114_32400_081 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10900077, DNA
sequence
Length = 716
Score = 44.1 bits (22), Expect = 0.059
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1684 gaggaggaggagcacaaggagg 1705
||||||||||||||||||||||
Sbjct: 387 gaggaggaggagcacaaggagg 408
>gb|CL186238.1|CL186238 104_400_10900077_116_32404_081 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10900077, DNA
sequence
Length = 592
Score = 44.1 bits (22), Expect = 0.059
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 1684 gaggaggaggagcacaaggagg 1705
||||||||||||||||||||||
Sbjct: 343 gaggaggaggagcacaaggagg 322
>gb|CW131791.1|CW131791 104_514_11115862_116_34785_081 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11115862, DNA
sequence
Length = 682
Score = 44.1 bits (22), Expect = 0.059
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 1684 gaggaggaggagcacaaggagg 1705
||||||||||||||||||||||
Sbjct: 653 gaggaggaggagcacaaggagg 632
>gb|CW322439.1|CW322439 104_816_11476099_116_35948_076 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11476099, DNA
sequence
Length = 749
Score = 44.1 bits (22), Expect = 0.059
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1684 gaggaggaggagcacaaggagg 1705
||||||||||||||||||||||
Sbjct: 235 gaggaggaggagcacaaggagg 256
>gb|CW349432.1|CW349432 fsbb001f010e05k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f010e05, DNA
sequence
Length = 262
Score = 44.1 bits (22), Expect = 0.059
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1684 gaggaggaggagcacaaggagg 1705
||||||||||||||||||||||
Sbjct: 240 gaggaggaggagcacaaggagg 261
>gb|CW438083.1|CW438083 fsbb001f155i06k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f155i06, DNA
sequence
Length = 603
Score = 44.1 bits (22), Expect = 0.059
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1684 gaggaggaggagcacaaggagg 1705
||||||||||||||||||||||
Sbjct: 445 gaggaggaggagcacaaggagg 466
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 639,821
Number of Sequences: 832831
Number of extensions: 639821
Number of successful extensions: 190814
Number of sequences better than 0.5: 61
Number of HSP's better than 0.5 without gapping: 60
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 190640
Number of HSP's gapped (non-prelim): 146
length of query: 2357
length of database: 491,359,669
effective HSP length: 20
effective length of query: 2337
effective length of database: 474,703,049
effective search space: 1109381025513
effective search space used: 1109381025513
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)