BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 8636621.2.1
(691 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN143415.1|CN143415 WOUND1_16_D04.b1_A002 Wounded leaves... 642 0.0
gb|BF705162.1|BF705162 RHIZ2_2_B07.g1_A003 Rhizome2 (RHIZ2)... 460 e-128
gb|BG053502.1|BG053502 RHIZ2_9_H06.g1_A003 Rhizome2 (RHIZ2)... 258 6e-067
gb|CW061318.1|CW061318 104_305_10520338_114_30152 Sorghum m... 252 4e-065
gb|CW162020.1|CW162020 104_569_11150724_148_36438_046 Sorgh... 252 4e-065
gb|CW232580.1|CW232580 104_685_11212893_148_37366_091 Sorgh... 252 4e-065
gb|CW162019.1|CW162019 104_569_11150724_116_36437_046 Sorgh... 145 6e-033
gb|AW283962.1|AW283962 LG1_264_A11.g1_A002 Light Grown 1 (L... 145 6e-033
gb|CL168345.1|CL168345 104_366_10810753_116_31807_049 Sorgh... 133 2e-029
gb|CW061319.1|CW061319 104_305_10520338_115_30153 Sorghum m... 54 2e-005
gb|AW922346.1|AW922346 DG1_18_A04.g1_A002 Dark Grown 1 (DG1... 48 0.001
gb|BE360434.1|BE360434 DG1_63_A09.g1_A002 Dark Grown 1 (DG1... 48 0.001
gb|CW219289.1|CW219289 104_653_11196665_148_37142_075 Sorgh... 46 0.004
gb|CW323702.1|CW323702 104_818_11476771_148_35906_080 Sorgh... 46 0.004
gb|CW470631.1|CW470631 fsbb001f223o24f0 Sorghum methylation... 46 0.004
gb|CW500484.1|CW500484 fsbb001f295n02k0 Sorghum methylation... 46 0.004
gb|CX613294.1|CX613294 GABR1_7_H05.b1_A002 GA- or brassinol... 46 0.004
>gb|CN143415.1|CN143415 WOUND1_16_D04.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_16_D04_A002 3', mRNA sequence
Length = 679
Score = 642 bits (324), Expect = 0.0
Identities = 414/443 (93%), Gaps = 12/443 (2%)
Strand = Plus / Minus
Query: 255 tcacgccagcatggccggggctgcttcttcatctttcgccgaagcttctccgccgagcag 314
|||||||||||||||||| ||| ||||| |||||| ||||||||||||||||||||||
Sbjct: 440 tcacgccagcatggccggagct---tcttcgtctttcaccgaagcttctccgccgagcag 384
Query: 315 gtgccgcgtcacgtctgctccctg------cgccagctgatcctgcagcaggttcctggc 368
||||| |||||||||| ||||||| |||||||||||||||||| |||||||||
Sbjct: 383 gtgcctcgtcacgtctcctccctgatgacgcgccagctgatcctgcag---gttcctggc 327
Query: 369 gcccttcttctcggcgctcttgccccacagcacgaagtagaggccgatgacgatcagcac 428
| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 ggccttcttctccgcgctcttgccccacagcacgaagtagaggccgatgacgatcagcac 267
Query: 429 agctccaatgatccctcccgtgtagagctggtccccgaggatggcggaagccatgacggc 488
||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct: 266 agctccaatgatccctcccgtgtagagctggtctccgaggatggcggcagccatgacggc 207
Query: 489 gacggccacggtctgcactggctggaagacggcggtgaagagcgggcctcccctgtcgat 548
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 206 gacggcgacggtctgcactggctggaagacggcggtgaacagcgggcctcccctgtcgat 147
Query: 549 gcaccagatctgcagagcaaacgctaccccggatgccacaaggccagcgtataggatggt 608
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct: 146 gcaccagatctgcagagcaaacgcgaccccggatgccaccaggccagcgtataggatggt 87
Query: 609 gaagagctcccctcctgagcggaccttccacctgctcaggtcctcctcggtgaaggcggc 668
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct: 86 gaagagctccactcctgagtggaccttccacctgctcaggtcctcctcggtgaagacggc 27
Query: 669 aatggccaggaactggaggagcc 691
|||| ||||||||||||||||||
Sbjct: 26 aatgaccaggaactggaggagcc 4
Score = 145 bits (73), Expect = 6e-033
Identities = 116/129 (89%), Gaps = 6/129 (4%)
Strand = Plus / Minus
Query: 95 acagactcacagcagcatggctacacactgttccacaccggcaacccatgcacacttgtt 154
||||| |||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct: 605 acagagtcacagcagcatggctac----tgttccacactggcaacccatgcacacttgtt 550
Query: 155 cttggttgccagattggaacagctgaaatcacacgactc--atacggtcccaaatgcaac 212
|||||||||| ||||||||||||||||||||||| |||| ||||| ||||||||||||
Sbjct: 549 cttggttgcctgattggaacagctgaaatcacacaactcatatacgttcccaaatgcaaa 490
Query: 213 aggactacg 221
| |||||||
Sbjct: 489 acgactacg 481
Score = 50.1 bits (25), Expect = 3e-004
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 22 cgaattatggatgaagtgattttatagttatac 54
||||| |||||||||||||||||||| ||||||
Sbjct: 675 cgaatcatggatgaagtgattttatacttatac 643
>gb|BF705162.1|BF705162 RHIZ2_2_B07.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 477
Score = 460 bits (232), Expect = e-128
Identities = 313/339 (92%), Gaps = 12/339 (3%)
Strand = Plus / Minus
Query: 255 tcacgccagcatggccggggctgcttcttcatctttcgccgaagcttctccgccgagcag 314
|||||||||||||||||| ||| ||||| |||||| |||||||||||||||| |||||
Sbjct: 334 tcacgccagcatggccggagct---tcttcgtctttcaccgaagcttctccgcctagcag 278
Query: 315 gtgccgcgtcacgtctgctccctg------cgccagctgatcctgcagcaggttcctggc 368
||||| |||||||||| ||||||| |||||||||||||||||| |||||||||
Sbjct: 277 gtgcctcgtcacgtctcctccctgatgatgcgccagctgatcctgcag---gttcctggc 221
Query: 369 gcccttcttctcggcgctcttgccccacagcacgaagtagaggccgatgacgatcagcac 428
| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 220 ggccttcttctccgcgctcttgccccacagcacgaagtagaggccgatgacgatcagcac 161
Query: 429 agctccaatgatccctcccgtgtagagctggtccccgaggatggcggaagccatgacggc 488
||||||||||||||||||||||||||||||||| ||||||||||||| || |||||||||
Sbjct: 160 agctccaatgatccctcccgtgtagagctggtctccgaggatggcggcagacatgacggc 101
Query: 489 gacggccacggtctgcactggctggaagacggcggtgaagagcgggcctcccctgtcgat 548
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 100 gacggcgacggtctgcactggctggaagacggcggtgaacagcgggcctcccctgtcgat 41
Query: 549 gcaccagatctgcagagcaaacgctaccccggatgccac 587
|||||||||||||||||||||||| ||||||||||||||
Sbjct: 40 gcaccagatctgcagagcaaacgcaaccccggatgccac 2
Score = 111 bits (56), Expect = 9e-023
Identities = 93/103 (90%), Gaps = 3/103 (2%)
Strand = Plus / Minus
Query: 121 actgttccacaccggcaacccatgcacacttgttcttggttgccagattggaacagctga 180
|||||||| ||| ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 476 actgttcc-cactggcaacccatgcacacttgttcttggttgcctgattggaacagctga 418
Query: 181 aatcacacgactc--atacggtcccaaatgcaacaggactacg 221
| |||||| |||| ||||| |||||||||||| | |||||||
Sbjct: 417 attcacacaactcatatacgttcccaaatgcaaaacgactacg 375
>gb|BG053502.1|BG053502 RHIZ2_9_H06.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 440
Score = 258 bits (130), Expect = 6e-067
Identities = 193/213 (90%), Gaps = 12/213 (5%)
Strand = Plus / Minus
Query: 255 tcacgccagcatggccggggctgcttcttcatctttcgccgaagcttctccgccgagcag 314
|||||||||||||||||| ||| ||||| |||||| |||||||||||||||| |||||
Sbjct: 207 tcacgccagcatggccggagct---tcttcgtctttcaccgaagcttctccgcctagcag 151
Query: 315 gtgccgcgtcacgtctgctccctg------cgccagctgatcctgcagcaggttcctggc 368
||||| |||||||||| ||||||| |||||||||||||||||| |||||||||
Sbjct: 150 gtgcctcgtcacgtctcctccctgatgatgcgccagctgatcctgcag---gttcctggc 94
Query: 369 gcccttcttctcggcgctcttgccccacagcacgaagtagaggccgatgacgatcagcac 428
| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 93 ggccttcttctccgcgctcttgccccacagcacgaagtagaggccgatgacgatcagcac 34
Query: 429 agctccaatgatccctcccgtgtagagctggtc 461
|||||||||||||||||||||||||||||||||
Sbjct: 33 agctccaatgatccctcccgtgtagagctggtc 1
Score = 135 bits (68), Expect = 6e-030
Identities = 114/128 (89%), Gaps = 6/128 (4%)
Strand = Plus / Minus
Query: 96 cagactcacagcagcatggctacacactgttccacaccggcaacccatgcacacttgttc 155
|||| |||||||||||||||||| |||||||||| ||||||||||||||||||||||
Sbjct: 371 cagagtcacagcagcatggctac----tgttccacactggcaacccatgcacacttgttc 316
Query: 156 ttggttgccagattggaacagctgaaatcacacgactc--atacggtcccaaatgcaaca 213
||||||||| |||||||||||||||| |||||| |||| ||||| |||||||||||| |
Sbjct: 315 ttggttgcctgattggaacagctgaattcacacaactcatatacgttcccaaatgcaaaa 256
Query: 214 ggactacg 221
|||||||
Sbjct: 255 cgactacg 248
Score = 50.1 bits (25), Expect = 3e-004
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 22 cgaattatggatgaagtgattttatagttatac 54
||||| |||||||||||||||||||| ||||||
Sbjct: 440 cgaatcatggatgaagtgattttatacttatac 408
>gb|CW061318.1|CW061318 104_305_10520338_114_30152 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10520338, DNA
sequence
Length = 641
Score = 252 bits (127), Expect = 4e-065
Identities = 142/147 (96%)
Strand = Plus / Plus
Query: 441 ccctcccgtgtagagctggtccccgaggatggcggaagccatgacggcgacggccacggt 500
||||||||||||||||||||| ||||||||||||| |||||||||||||||||| |||||
Sbjct: 458 ccctcccgtgtagagctggtctccgaggatggcggcagccatgacggcgacggcgacggt 517
Query: 501 ctgcactggctggaagacggcggtgaagagcgggcctcccctgtcgatgcaccagatctg 560
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 518 ctgcactggctggaagacggcggtgaacagcgggcctcccctgtcgatgcaccagatctg 577
Query: 561 cagagcaaacgctaccccggatgccac 587
|||||||||||| ||||||||||||||
Sbjct: 578 cagagcaaacgcgaccccggatgccac 604
Score = 228 bits (115), Expect = 5e-058
Identities = 175/194 (90%), Gaps = 12/194 (6%)
Strand = Plus / Plus
Query: 255 tcacgccagcatggccggggctgcttcttcatctttcgccgaagcttctccgccgagcag 314
|||||||||||||||||| ||| ||||| |||||| ||||||||||||||||||||||
Sbjct: 83 tcacgccagcatggccggagct---tcttcgtctttcaccgaagcttctccgccgagcag 139
Query: 315 gtgccgcgtcacgtctgctccctg------cgccagctgatcctgcagcaggttcctggc 368
||||| |||||||||| ||||||| |||||||||||||||||| |||||||||
Sbjct: 140 gtgcctcgtcacgtctcctccctgatgacgcgccagctgatcctgcag---gttcctggc 196
Query: 369 gcccttcttctcggcgctcttgccccacagcacgaagtagaggccgatgacgatcagcac 428
| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 ggccttcttctccgcgctcttgccccacagcacgaagtagaggccgatgacgatcagcac 256
Query: 429 agctccaatgatcc 442
||||||||||||||
Sbjct: 257 agctccaatgatcc 270
>gb|CW162020.1|CW162020 104_569_11150724_148_36438_046 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11150724, DNA
sequence
Length = 742
Score = 252 bits (127), Expect = 4e-065
Identities = 142/147 (96%)
Strand = Plus / Minus
Query: 441 ccctcccgtgtagagctggtccccgaggatggcggaagccatgacggcgacggccacggt 500
||||||||||||||||||||| ||||||||||||| |||||||||||||||||| |||||
Sbjct: 514 ccctcccgtgtagagctggtctccgaggatggcggcagccatgacggcgacggcgacggt 455
Query: 501 ctgcactggctggaagacggcggtgaagagcgggcctcccctgtcgatgcaccagatctg 560
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 454 ctgcactggctggaagacggcggtgaacagcgggcctcccctgtcgatgcaccagatctg 395
Query: 561 cagagcaaacgctaccccggatgccac 587
|||||||||||| ||||||||||||||
Sbjct: 394 cagagcaaacgcgaccccggatgccac 368
Score = 165 bits (83), Expect = 7e-039
Identities = 95/99 (95%)
Strand = Plus / Minus
Query: 593 cagcgtataggatggtgaagagctcccctcctgagcggaccttccacctgctcaggtcct 652
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct: 270 cagcgtataggatggtgaagagctccactcctgagtggaccttccacctgctcaggtcct 211
Query: 653 cctcggtgaaggcggcaatggccaggaactggaggagcc 691
||||||||||| |||||||| ||||||||||||||||||
Sbjct: 210 cctcggtgaagacggcaatgaccaggaactggaggagcc 172
Score = 81.8 bits (41), Expect = 8e-014
Identities = 41/41 (100%)
Strand = Plus / Minus
Query: 402 gaagtagaggccgatgacgatcagcacagctccaatgatcc 442
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 gaagtagaggccgatgacgatcagcacagctccaatgatcc 702
>gb|CW232580.1|CW232580 104_685_11212893_148_37366_091 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11212893, DNA
sequence
Length = 710
Score = 252 bits (127), Expect = 4e-065
Identities = 142/147 (96%)
Strand = Plus / Plus
Query: 441 ccctcccgtgtagagctggtccccgaggatggcggaagccatgacggcgacggccacggt 500
||||||||||||||||||||| ||||||||||||| |||||||||||||||||| |||||
Sbjct: 262 ccctcccgtgtagagctggtctccgaggatggcggcagccatgacggcgacggcgacggt 321
Query: 501 ctgcactggctggaagacggcggtgaagagcgggcctcccctgtcgatgcaccagatctg 560
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 322 ctgcactggctggaagacggcggtgaacagcgggcctcccctgtcgatgcaccagatctg 381
Query: 561 cagagcaaacgctaccccggatgccac 587
|||||||||||| ||||||||||||||
Sbjct: 382 cagagcaaacgcgaccccggatgccac 408
Score = 165 bits (83), Expect = 7e-039
Identities = 95/99 (95%)
Strand = Plus / Plus
Query: 593 cagcgtataggatggtgaagagctcccctcctgagcggaccttccacctgctcaggtcct 652
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct: 506 cagcgtataggatggtgaagagctccactcctgagtggaccttccacctgctcaggtcct 565
Query: 653 cctcggtgaaggcggcaatggccaggaactggaggagcc 691
||||||||||| |||||||| ||||||||||||||||||
Sbjct: 566 cctcggtgaagacggcaatgaccaggaactggaggagcc 604
Score = 135 bits (68), Expect = 6e-030
Identities = 71/72 (98%)
Strand = Plus / Plus
Query: 371 ccttcttctcggcgctcttgccccacagcacgaagtagaggccgatgacgatcagcacag 430
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3 ccttcttctccgcgctcttgccccacagcacgaagtagaggccgatgacgatcagcacag 62
Query: 431 ctccaatgatcc 442
||||||||||||
Sbjct: 63 ctccaatgatcc 74
>gb|CW162019.1|CW162019 104_569_11150724_116_36437_046 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11150724, DNA
sequence
Length = 694
Score = 145 bits (73), Expect = 6e-033
Identities = 116/129 (89%), Gaps = 6/129 (4%)
Strand = Plus / Plus
Query: 95 acagactcacagcagcatggctacacactgttccacaccggcaacccatgcacacttgtt 154
||||| |||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct: 427 acagagtcacagcagcatggctac----tgttccacactggcaacccatgcacacttgtt 482
Query: 155 cttggttgccagattggaacagctgaaatcacacgactc--atacggtcccaaatgcaac 212
|||||||||| ||||||||||||||||||||||| |||| ||||| ||||||||||||
Sbjct: 483 cttggttgcctgattggaacagctgaaatcacacaactcatatacgttcccaaatgcaaa 542
Query: 213 aggactacg 221
| |||||||
Sbjct: 543 acgactacg 551
Score = 99.6 bits (50), Expect = 3e-019
Identities = 76/84 (90%), Gaps = 3/84 (3%)
Strand = Plus / Plus
Query: 255 tcacgccagcatggccggggctgcttcttcatctttcgccgaagcttctccgccgagcag 314
|||||||||||||||||| ||| ||||| |||||| ||||||||||||||||||||||
Sbjct: 592 tcacgccagcatggccggagct---tcttcgtctttcaccgaagcttctccgccgagcag 648
Query: 315 gtgccgcgtcacgtctgctccctg 338
||||| |||||||||| |||||||
Sbjct: 649 gtgcctcgtcacgtctcctccctg 672
Score = 50.1 bits (25), Expect = 3e-004
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 22 cgaattatggatgaagtgattttatagttatac 54
||||| |||||||||||||||||||| ||||||
Sbjct: 357 cgaatcatggatgaagtgattttatacttatac 389
>gb|AW283962.1|AW283962 LG1_264_A11.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 350
Score = 145 bits (73), Expect = 6e-033
Identities = 116/129 (89%), Gaps = 6/129 (4%)
Strand = Plus / Minus
Query: 95 acagactcacagcagcatggctacacactgttccacaccggcaacccatgcacacttgtt 154
||||| |||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct: 288 acagagtcacagcagcatggctac----tgttccacactggcaacccatgcacacttgtt 233
Query: 155 cttggttgccagattggaacagctgaaatcacacgactc--atacggtcccaaatgcaac 212
|||||||||| ||||||||||||||||||||||| |||| ||||| ||||||||||||
Sbjct: 232 cttggttgcctgattggaacagctgaaatcacacaactcatatacgttcccaaatgcaaa 173
Query: 213 aggactacg 221
| |||||||
Sbjct: 172 acgactacg 164
Score = 107 bits (54), Expect = 1e-021
Identities = 111/129 (86%), Gaps = 12/129 (9%)
Strand = Plus / Minus
Query: 255 tcacgccagcatggccggggctgcttcttcatctttcgccgaagcttctccgccgagcag 314
|||||||||||||||||| ||| ||||| |||||| ||||||||||||||||||||||
Sbjct: 123 tcacgccagcatggccggagct---tcttcgtctttcaccgaagcttctccgccgagcag 67
Query: 315 gtgccgcgtcacgtctgctccct------gcgccagctgatcctgcagcaggttcctggc 368
||||| |||||||||| |||||| ||||||||||||||| |||||||||||||
Sbjct: 66 gtgcctcgtcacgtctcctccctgatgacgcgccagctgatcct---gcaggttcctggc 10
Query: 369 gcccttctt 377
| |||||||
Sbjct: 9 ggccttctt 1
Score = 42.1 bits (21), Expect = 0.067
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 30 ggatgaagtgattttatagttatac 54
|||||||||||||||||| ||||||
Sbjct: 350 ggatgaagtgattttatacttatac 326
>gb|CL168345.1|CL168345 104_366_10810753_116_31807_049 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10810753, DNA
sequence
Length = 219
Score = 133 bits (67), Expect = 2e-029
Identities = 132/153 (86%), Gaps = 13/153 (8%)
Strand = Plus / Plus
Query: 255 tcacgccagcatggccggggctgcttcttcatctttcgccgaagcttctccgccgagcag 314
|||||||||||||||||| ||| ||||| |||||| ||||||||||||||||||||||
Sbjct: 73 tcacgccagcatggccggagct---tcttcgtctttcaccgaagcttctccgccgagcag 129
Query: 315 gtgccgcgtcacgtctgctccctg-------cgccagctgatcctgcagcaggttcctgg 367
||||| |||||||||| ||||||| |||||||||||||| || |||||||||
Sbjct: 130 gtgcctcgtcacgtctcctccctgatgaccccgccagctgatcct---gcgggttcctgg 186
Query: 368 cgcccttcttctcggcgctcttgccccacagca 400
|| |||||||||| |||||||||||||||||||
Sbjct: 187 cggccttcttctccgcgctcttgccccacagca 219
>gb|CW061319.1|CW061319 104_305_10520338_115_30153 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10520338, DNA
sequence
Length = 484
Score = 54.0 bits (27), Expect = 2e-005
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 645 caggtcctcctcggtgaaggcggcaatggccagga 679
||||||||||||||||||| |||||||| ||||||
Sbjct: 484 caggtcctcctcggtgaagacggcaatgaccagga 450
>gb|AW922346.1|AW922346 DG1_18_A04.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 646
Score = 48.1 bits (24), Expect = 0.001
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 383 cgctcttgccccacagcacgaagtagaggccg 414
||||||||||||| ||||||| ||||||||||
Sbjct: 252 cgctcttgccccagagcacgaggtagaggccg 221
Score = 46.1 bits (23), Expect = 0.004
Identities = 62/75 (82%)
Strand = Plus / Minus
Query: 543 gtcgatgcaccagatctgcagagcaaacgctaccccggatgccacaaggccagcgtatag 602
|||||||||||||||||||| || ||||| ||||| || || | | || ||||||||
Sbjct: 92 gtcgatgcaccagatctgcaccgcgaacgccacccccgacgcgatgaacccggcgtatag 33
Query: 603 gatggtgaagagctc 617
||| |||||||||||
Sbjct: 32 gattgtgaagagctc 18
>gb|BE360434.1|BE360434 DG1_63_A09.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 570
Score = 48.1 bits (24), Expect = 0.001
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 383 cgctcttgccccacagcacgaagtagaggccg 414
||||||||||||| ||||||| ||||||||||
Sbjct: 233 cgctcttgccccagagcacgaggtagaggccg 202
Score = 42.1 bits (21), Expect = 0.067
Identities = 60/73 (82%)
Strand = Plus / Minus
Query: 543 gtcgatgcaccagatctgcagagcaaacgctaccccggatgccacaaggccagcgtatag 602
|||||||||||||||||||| || ||||| ||||| || || | | || ||||||||
Sbjct: 73 gtcgatgcaccagatctgcaccgcgaacgccacccccgacgcgatgaacccggcgtatag 14
Query: 603 gatggtgaagagc 615
||| |||||||||
Sbjct: 13 gattgtgaagagc 1
>gb|CW219289.1|CW219289 104_653_11196665_148_37142_075 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11196665, DNA
sequence
Length = 660
Score = 46.1 bits (23), Expect = 0.004
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 387 cttgccccacagcacgaagtagaggccgatgacgatcag 425
||||||||| ||||| ||||||| ||||||||||||||
Sbjct: 91 cttgccccagagcaccgagtagagcccgatgacgatcag 129
>gb|CW323702.1|CW323702 104_818_11476771_148_35906_080 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11476771, DNA
sequence
Length = 649
Score = 46.1 bits (23), Expect = 0.004
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 387 cttgccccacagcacgaagtagaggccgatgacgatcag 425
||||||||| ||||| ||||||| ||||||||||||||
Sbjct: 284 cttgccccagagcaccgagtagagcccgatgacgatcag 246
>gb|CW470631.1|CW470631 fsbb001f223o24f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f223o24, DNA
sequence
Length = 620
Score = 46.1 bits (23), Expect = 0.004
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 387 cttgccccacagcacgaagtagaggccgatgacgatcag 425
||||||||| ||||| ||||||| ||||||||||||||
Sbjct: 307 cttgccccagagcaccgagtagagcccgatgacgatcag 269
>gb|CW500484.1|CW500484 fsbb001f295n02k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f295n02, DNA
sequence
Length = 620
Score = 46.1 bits (23), Expect = 0.004
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 387 cttgccccacagcacgaagtagaggccgatgacgatcag 425
||||||||| ||||| ||||||| ||||||||||||||
Sbjct: 492 cttgccccagagcaccgagtagagcccgatgacgatcag 454
>gb|CX613294.1|CX613294 GABR1_7_H05.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_7_H05_A002 3', mRNA sequence
Length = 727
Score = 46.1 bits (23), Expect = 0.004
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 387 cttgccccacagcacgaagtagaggccgatgacgatcag 425
||||||||| ||||| ||||||| ||||||||||||||
Sbjct: 211 cttgccccaaagcaccgagtagagcccgatgacgatcag 173
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 180,259
Number of Sequences: 832831
Number of extensions: 180259
Number of successful extensions: 52134
Number of sequences better than 0.5: 17
Number of HSP's better than 0.5 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 52059
Number of HSP's gapped (non-prelim): 53
length of query: 691
length of database: 491,359,669
effective HSP length: 20
effective length of query: 671
effective length of database: 474,703,049
effective search space: 318525745879
effective search space used: 318525745879
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)