BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 8635788.2.1
(753 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW200341.1|CW200341 104_625_11184014_148_36859_049 Sorgh... 428 e-118
gb|BI075862.1|BI075862 IP1_22_B10.b1_A002 Immature pannicle... 117 2e-024
gb|CN134747.1|CN134747 OX1_28_E09.b1_A002 Oxidatively-stres... 117 2e-024
gb|CN134822.1|CN134822 OX1_28_E09.g1_A002 Oxidatively-stres... 117 2e-024
gb|CN146142.1|CN146142 WOUND1_37_H10.g1_A002 Wounded leaves... 117 2e-024
gb|CN146081.1|CN146081 WOUND1_37_H10.b1_A002 Wounded leaves... 76 5e-012
gb|CL147735.1|CL147735 104_327_10592599_116_31781_107 Sorgh... 50 3e-004
gb|CW390707.1|CW390707 fsbb001f076h18k0 Sorghum methylation... 50 3e-004
gb|CW223790.1|CW223790 104_659_11203105_116_37185_001 Sorgh... 44 0.018
gb|CW479276.1|CW479276 fsbb001f237k12k0 Sorghum methylation... 44 0.018
gb|BE356299.1|BE356299 DG1_124_F03.b1_A002 Dark Grown 1 (DG... 44 0.018
gb|BE356366.1|BE356366 DG1_124_F03.g1_A002 Dark Grown 1 (DG... 44 0.018
gb|CN142899.1|CN142899 WOUND1_13_B01.b1_A002 Wounded leaves... 44 0.018
gb|CN142984.1|CN142984 WOUND1_13_B01.g1_A002 Wounded leaves... 44 0.018
gb|CW020888.1|CW020888 104_109_10409224_116_30500 Sorghum m... 42 0.073
gb|CW065307.1|CW065307 104_312_10523073_115_30130 Sorghum m... 42 0.073
gb|CW209223.1|CW209223 104_639_11189119_116_36989_030 Sorgh... 42 0.073
gb|CW325603.1|CW325603 104_820_11477776_116_35926_054 Sorgh... 42 0.073
gb|CW325604.1|CW325604 104_820_11477776_148_35927_054 Sorgh... 42 0.073
gb|CW391011.1|CW391011 fsbb001f076o24k0 Sorghum methylation... 42 0.073
gb|CW405637.1|CW405637 fsbb001f098e15k0 Sorghum methylation... 42 0.073
gb|CF484474.1|CF484474 POL1_25_B12.g1_A002 Pollen Sorghum b... 42 0.073
gb|CN128330.1|CN128330 RHOH1_28_F07.g1_A002 Acid- and alkal... 42 0.073
gb|CN131099.1|CN131099 RHOH1_45_H01.g1_A002 Acid- and alkal... 42 0.073
gb|CN137668.1|CN137668 OX1_58_F10.g1_A002 Oxidatively-stres... 42 0.073
gb|CN139340.1|CN139340 OX1_21_A10.g1_A002 Oxidatively-stres... 42 0.073
gb|CX608419.1|CX608419 ANR1_38_B09.g1_A002 Anaerobic roots ... 42 0.073
gb|CX619649.1|CX619649 GABR1_46_H12.g1_A002 GA- or brassino... 42 0.073
gb|CX622427.1|CX622427 GABR1_63_H06.g2_A002 GA- or brassino... 42 0.073
gb|CL150255.1|CL150255 104_331_10778391_114_31355_327 Sorgh... 40 0.29
gb|CL150256.1|CL150256 104_331_10778391_116_31356_327 Sorgh... 40 0.29
gb|CW057792.1|CW057792 104_300_10518407_5_30082 Sorghum met... 40 0.29
gb|CW120220.1|CW120220 104_497_11109203_116_34642_040 Sorgh... 40 0.29
gb|CW120221.1|CW120221 104_497_11109203_148_34646_040 Sorgh... 40 0.29
gb|CW200199.1|CW200199 104_625_11183931_116_36861_006 Sorgh... 40 0.29
gb|CW218614.1|CW218614 104_652_11196284_148_37533_076 Sorgh... 40 0.29
gb|CW220496.1|CW220496 104_655_11197380_148_37454_046 Sorgh... 40 0.29
gb|CW225325.1|CW225325 104_662_11204290_148_37205_033 Sorgh... 40 0.29
gb|CW225497.1|CW225497 104_663_11204384_116_37214_030 Sorgh... 40 0.29
gb|CW235975.1|CW235975 104_691_11215345_116_37404_003 Sorgh... 40 0.29
gb|CW235976.1|CW235976 104_691_11215345_148_37401_003 Sorgh... 40 0.29
gb|CW261937.1|CW261937 104_729_11229782_148_35206_059 Sorgh... 40 0.29
gb|CW320729.1|CW320729 104_813_11475165_116_35900_083 Sorgh... 40 0.29
gb|CW320730.1|CW320730 104_813_11475165_148_35896_083 Sorgh... 40 0.29
gb|CW322315.1|CW322315 104_816_11476031_148_35952_096 Sorgh... 40 0.29
gb|CW355751.1|CW355751 fsbb001f020i13k0 Sorghum methylation... 40 0.29
gb|CW361148.1|CW361148 fsbb001f029i23f0 Sorghum methylation... 40 0.29
gb|CW368396.1|CW368396 fsbb001f042f13f0 Sorghum methylation... 40 0.29
gb|CW460973.1|CW460973 fsbb001f208g20f0 Sorghum methylation... 40 0.29
gb|CW479157.1|CW479157 fsbb001f237h04k0 Sorghum methylation... 40 0.29
gb|CW484929.1|CW484929 fsbb001f247g05f0 Sorghum methylation... 40 0.29
gb|CW791456.1|CW791456 SP__Ba0080B09.r SP__Ba Sorghum propi... 40 0.29
gb|CL703933.2|CL703933 SP__Bb0008G16.r SP__Bb Sorghum propi... 40 0.29
gb|AW671482.1|AW671482 LG1_347_E03.b1_A002 Light Grown 1 (L... 40 0.29
gb|BE126194.1|BE126194 DG1_68_A08.b1_A002 Dark Grown 1 (DG1... 40 0.29
gb|BE356855.1|BE356855 DG1_145_F01.b1_A002 Dark Grown 1 (DG... 40 0.29
gb|BE360789.1|BE360789 DG1_67_A08.b2_A002 Dark Grown 1 (DG1... 40 0.29
gb|BE360872.1|BE360872 DG1_67_A08.g1_A002 Dark Grown 1 (DG1... 40 0.29
gb|BE361124.1|BE361124 DG1_70_B02.b1_A002 Dark Grown 1 (DG1... 40 0.29
gb|BG103383.1|BG103383 RHIZ2_19_E08.b1_A003 Rhizome2 (RHIZ2... 40 0.29
gb|BG488343.1|BG488343 RHIZ2_62_E04.b1_A003 Rhizome2 (RHIZ2... 40 0.29
gb|BG488353.1|BG488353 RHIZ2_62_F04.b1_A003 Rhizome2 (RHIZ2... 40 0.29
gb|BG560045.1|BG560045 RHIZ2_68_G03.b1_A003 Rhizome2 (RHIZ2... 40 0.29
gb|BG560324.1|BG560324 RHIZ2_72_H03.b1_A003 Rhizome2 (RHIZ2... 40 0.29
gb|CD222560.1|CD222560 CCC1_22_A05.g1_A007 Callus culture/c... 40 0.29
gb|CD224030.1|CD224030 CCC1_31_A05.g1_A007 Callus culture/c... 40 0.29
gb|CD430567.1|CD430567 ETH1_19_B01.g1_A002 Ethylene-treated... 40 0.29
gb|CF427491.1|CF427491 PH1_1_G01.g1_A002 Phosphorous-defici... 40 0.29
gb|CF429984.1|CF429984 PH1_25_A02.g1_A002 Phosphorous-defic... 40 0.29
gb|CN129104.1|CN129104 RHOH1_33_B12.g1_A002 Acid- and alkal... 40 0.29
gb|CN129190.1|CN129190 RHOH1_34_B07.b3_A002 Acid- and alkal... 40 0.29
gb|CN133830.1|CN133830 OX1_18_C09.g1_A002 Oxidatively-stres... 40 0.29
gb|CN134973.1|CN134973 OX1_29_F03.g1_A002 Oxidatively-stres... 40 0.29
gb|CN139012.1|CN139012 OX1_15_A12.g1_A002 Oxidatively-stres... 40 0.29
gb|CN139176.1|CN139176 OX1_16_A11.g1_A002 Oxidatively-stres... 40 0.29
gb|CN139387.1|CN139387 OX1_21_F09.g1_A002 Oxidatively-stres... 40 0.29
gb|CN140001.1|CN140001 OX1_33_A04.g1_A002 Oxidatively-stres... 40 0.29
gb|CN150674.1|CN150674 WOUND1_70_F05.g1_A002 Wounded leaves... 40 0.29
gb|CX610256.1|CX610256 ANR1_17_C03.g1_A002 Anaerobic roots ... 40 0.29
gb|CX611801.1|CX611801 ANR1_26_G03.g1_A002 Anaerobic roots ... 40 0.29
gb|CX617127.1|CX617127 GABR1_31_G09.g1_A002 GA- or brassino... 40 0.29
>gb|CW200341.1|CW200341 104_625_11184014_148_36859_049 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11184014, DNA
sequence
Length = 396
Score = 428 bits (216), Expect = e-118
Identities = 336/376 (89%)
Strand = Plus / Plus
Query: 372 gaagacgtcgctggtgcagttccacgtcgtgtccgcggcgctccccgccgcgcagctcga 431
|||||||||||||||||||||||||||||| || ||||||||| | || |||||||| ||
Sbjct: 1 gaagacgtcgctggtgcagttccacgtcgtctcggcggcgctcgcggcggcgcagctgga 60
Query: 432 gaccgtcagcaacccgctgcggacgcaggctggcgacaccggcaggggcaagtacccgct 491
||| |||||||||||||||||||||||||| || |||||||| ||||| |||||||||||
Sbjct: 61 gacggtcagcaacccgctgcggacgcaggcgggggacaccgggaggggaaagtacccgct 120
Query: 492 caacctcaccgcggacggctccagcgtcaacgtctccacgggggtcgtcaacgccacgct 551
|||||||||||| |||||| ||| ||||||| ||||||| ||||| || |||||||||||
Sbjct: 121 caacctcaccgccgacggcaccaacgtcaacatctccaccggggtggtgaacgccacgct 180
Query: 552 cgacgccacgccgctttacgccggggacaggctcgtcgtctaccaggtcagcaaggtgct 611
||||| ||||||||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 181 cgacggcacgccgctctacgccggggacaggctcgtcgtctaccaggtcgacaaggtgct 240
Query: 612 gctgccgtgggcgctctacggcccgccggtccccgcgccggccccttccccggcggagag 671
||||| |||||||||||||||||||| ||||| ||||| || || | || || | |||
Sbjct: 241 cctgccatgggcgctctacggcccgcccgtcccggcgcccgcgcccgcgcccgccgcgag 300
Query: 672 caagaagaagaagaaggccacgccggatgctgtggcggatgcgccggcggctgagactgc 731
||||||||||||||||||| |||||||||| ||||| || ||||| ||||||||||| ||
Sbjct: 301 caagaagaagaagaaggccgcgccggatgcggtggctgacgcgcccgcggctgagaccgc 360
Query: 732 ggcggggacgacgacg 747
||||||||||||||||
Sbjct: 361 ggcggggacgacgacg 376
>gb|BI075862.1|BI075862 IP1_22_B10.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 573
Score = 117 bits (59), Expect = 2e-024
Identities = 143/171 (83%)
Strand = Plus / Plus
Query: 291 cgggctcacggtgttcgcgccgcccgacagcgccttctccgcgctccccgccggcacgct 350
|||| |||||||||||||||| | |||| ||||||| | |||||||||||||||||||
Sbjct: 356 cgggatcacggtgttcgcgcccacggacaacgccttcacgtcgctccccgccggcacgct 415
Query: 351 caactccctctccgaccagcagaagacgtcgctggtgcagttccacgtcgtgtccgcggc 410
|||||| || || |||||| | |||| |||||||||||| ||||||||||||| | ||
Sbjct: 416 caactcgctgtcggaccaggacaagaacgcgctggtgcagtaccacgtcgtgtccaccgc 475
Query: 411 gctccccgccgcgcagctcgagaccgtcagcaacccgctgcggacgcaggc 461
||||| ||||| |||| ||||||||||||||||| |||||||||||
Sbjct: 476 catccccatgtcgcagttcgacaccgtcagcaacccgctccggacgcaggc 526
>gb|CN134747.1|CN134747 OX1_28_E09.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_28_E09_A002 3', mRNA sequence
Length = 750
Score = 117 bits (59), Expect = 2e-024
Identities = 143/171 (83%)
Strand = Plus / Plus
Query: 291 cgggctcacggtgttcgcgccgcccgacagcgccttctccgcgctccccgccggcacgct 350
|||| |||||||||||||||| | |||| ||||||| | |||||||||||||||||||
Sbjct: 24 cgggatcacggtgttcgcgcccacggacaacgccttcacgtcgctccccgccggcacgct 83
Query: 351 caactccctctccgaccagcagaagacgtcgctggtgcagttccacgtcgtgtccgcggc 410
|||||| || || |||||| | |||| |||||||||||| ||||||||||||| | ||
Sbjct: 84 caactcgctgtcggaccaggacaagaacgcgctggtgcagtaccacgtcgtgtccaccgc 143
Query: 411 gctccccgccgcgcagctcgagaccgtcagcaacccgctgcggacgcaggc 461
||||| ||||| |||| ||||||||||||||||| |||||||||||
Sbjct: 144 catccccatgtcgcagttcgacaccgtcagcaacccgctccggacgcaggc 194
Score = 60.0 bits (30), Expect = 3e-007
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 577 gacaggctcgtcgtctaccaggtcagcaaggtgctgctgccg 618
||||| |||||||||||||||||| ||||||||||||||||
Sbjct: 307 gacagcctcgtcgtctaccaggtcgacaaggtgctgctgccg 348
>gb|CN134822.1|CN134822 OX1_28_E09.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_28_E09_A002 5', mRNA sequence
Length = 728
Score = 117 bits (59), Expect = 2e-024
Identities = 143/171 (83%)
Strand = Plus / Plus
Query: 291 cgggctcacggtgttcgcgccgcccgacagcgccttctccgcgctccccgccggcacgct 350
|||| |||||||||||||||| | |||| ||||||| | |||||||||||||||||||
Sbjct: 344 cgggatcacggtgttcgcgcccacggacaacgccttcacgtcgctccccgccggcacgct 403
Query: 351 caactccctctccgaccagcagaagacgtcgctggtgcagttccacgtcgtgtccgcggc 410
|||||| || || |||||| | |||| |||||||||||| ||||||||||||| | ||
Sbjct: 404 caactcgctgtcggaccaggacaagaacgcgctggtgcagtaccacgtcgtgtccaccgc 463
Query: 411 gctccccgccgcgcagctcgagaccgtcagcaacccgctgcggacgcaggc 461
||||| ||||| |||| ||||||||||||||||| |||||||||||
Sbjct: 464 catccccatgtcgcagttcgacaccgtcagcaacccgctccggacgcaggc 514
Score = 60.0 bits (30), Expect = 3e-007
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 577 gacaggctcgtcgtctaccaggtcagcaaggtgctgctgccg 618
||||| |||||||||||||||||| ||||||||||||||||
Sbjct: 627 gacagcctcgtcgtctaccaggtcgacaaggtgctgctgccg 668
>gb|CN146142.1|CN146142 WOUND1_37_H10.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_37_H10_A002 5', mRNA sequence
Length = 750
Score = 117 bits (59), Expect = 2e-024
Identities = 143/171 (83%)
Strand = Plus / Plus
Query: 291 cgggctcacggtgttcgcgccgcccgacagcgccttctccgcgctccccgccggcacgct 350
|||| |||||||||||||||| | |||| ||||||| | |||||||||||||||||||
Sbjct: 338 cgggatcacggtgttcgcgcccacggacaacgccttcacgtcgctccccgccggcacgct 397
Query: 351 caactccctctccgaccagcagaagacgtcgctggtgcagttccacgtcgtgtccgcggc 410
|||||| || || |||||| | |||| |||||||||||| ||||||||||||| | ||
Sbjct: 398 caactcgctgtcggaccaggacaagaacgcgctggtgcagtaccacgtcgtgtccaccgc 457
Query: 411 gctccccgccgcgcagctcgagaccgtcagcaacccgctgcggacgcaggc 461
||||| ||||| |||| ||||||||||||||||| |||||||||||
Sbjct: 458 catccccatgtcgcagttcgacaccgtcagcaacccgctccggacgcaggc 508
Score = 60.0 bits (30), Expect = 3e-007
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 577 gacaggctcgtcgtctaccaggtcagcaaggtgctgctgccg 618
||||| |||||||||||||||||| ||||||||||||||||
Sbjct: 621 gacagcctcgtcgtctaccaggtcgacaaggtgctgctgccg 662
>gb|CN146081.1|CN146081 WOUND1_37_H10.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_37_H10_A002 3', mRNA sequence
Length = 705
Score = 75.8 bits (38), Expect = 5e-012
Identities = 98/118 (83%)
Strand = Plus / Plus
Query: 344 gcacgctcaactccctctccgaccagcagaagacgtcgctggtgcagttccacgtcgtgt 403
||||||||||||| || || |||||| | |||| |||||||||||| |||||||||||
Sbjct: 1 gcacgctcaactcgctgtcggaccaggacaagaacgcgctggtgcagtaccacgtcgtgt 60
Query: 404 ccgcggcgctccccgccgcgcagctcgagaccgtcagcaacccgctgcggacgcaggc 461
|| | || ||||| ||||| |||| ||||||||||||||||| |||||||||||
Sbjct: 61 ccaccgccatccccatgtcgcagttcgacaccgtcagcaacccgctccggacgcaggc 118
Score = 60.0 bits (30), Expect = 3e-007
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 577 gacaggctcgtcgtctaccaggtcagcaaggtgctgctgccg 618
||||| |||||||||||||||||| ||||||||||||||||
Sbjct: 231 gacagcctcgtcgtctaccaggtcgacaaggtgctgctgccg 272
>gb|CL147735.1|CL147735 104_327_10592599_116_31781_107 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10592599, DNA
sequence
Length = 717
Score = 50.1 bits (25), Expect = 3e-004
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 341 ccggcacgctcaactccctctccgaccag 369
|||||||||||||||||||| ||||||||
Sbjct: 49 ccggcacgctcaactccctcaccgaccag 77
>gb|CW390707.1|CW390707 fsbb001f076h18k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f076h18, DNA
sequence
Length = 709
Score = 50.1 bits (25), Expect = 3e-004
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 341 ccggcacgctcaactccctctccgaccag 369
|||||||||||||||||||| ||||||||
Sbjct: 207 ccggcacgctcaactccctcaccgaccag 235
Score = 40.1 bits (20), Expect = 0.29
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 250 gagcagatcaccaaccagctcaag 273
||||||||||||| ||||||||||
Sbjct: 122 gagcagatcaccagccagctcaag 145
>gb|CW223790.1|CW223790 104_659_11203105_116_37185_001 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11203105, DNA
sequence
Length = 621
Score = 44.1 bits (22), Expect = 0.018
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 66 cctcgccgccgcccttctcctc 87
||||||||||||||||||||||
Sbjct: 126 cctcgccgccgcccttctcctc 147
>gb|CW479276.1|CW479276 fsbb001f237k12k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f237k12, DNA
sequence
Length = 590
Score = 44.1 bits (22), Expect = 0.018
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 66 cctcgccgccgcccttctcctc 87
||||||||||||||||||||||
Sbjct: 383 cctcgccgccgcccttctcctc 404
>gb|BE356299.1|BE356299 DG1_124_F03.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 566
Score = 44.1 bits (22), Expect = 0.018
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 378 gtcgctggtgcagttccacgtc 399
||||||||||||||||||||||
Sbjct: 360 gtcgctggtgcagttccacgtc 381
>gb|BE356366.1|BE356366 DG1_124_F03.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 553
Score = 44.1 bits (22), Expect = 0.018
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 378 gtcgctggtgcagttccacgtc 399
||||||||||||||||||||||
Sbjct: 93 gtcgctggtgcagttccacgtc 114
>gb|CN142899.1|CN142899 WOUND1_13_B01.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_13_B01_A002 3', mRNA sequence
Length = 751
Score = 44.1 bits (22), Expect = 0.018
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 378 gtcgctggtgcagttccacgtc 399
||||||||||||||||||||||
Sbjct: 98 gtcgctggtgcagttccacgtc 119
>gb|CN142984.1|CN142984 WOUND1_13_B01.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_13_B01_A002 5', mRNA sequence
Length = 773
Score = 44.1 bits (22), Expect = 0.018
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 378 gtcgctggtgcagttccacgtc 399
||||||||||||||||||||||
Sbjct: 342 gtcgctggtgcagttccacgtc 363
>gb|CW020888.1|CW020888 104_109_10409224_116_30500 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10409224, DNA
sequence
Length = 674
Score = 42.1 bits (21), Expect = 0.073
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 667 gagagcaagaagaagaagaag 687
|||||||||||||||||||||
Sbjct: 381 gagagcaagaagaagaagaag 361
>gb|CW065307.1|CW065307 104_312_10523073_115_30130 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10523073, DNA
sequence
Length = 541
Score = 42.1 bits (21), Expect = 0.073
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 320 gcgccttctccgcgctccccg 340
|||||||||||||||||||||
Sbjct: 88 gcgccttctccgcgctccccg 108
>gb|CW209223.1|CW209223 104_639_11189119_116_36989_030 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11189119, DNA
sequence
Length = 661
Score = 42.1 bits (21), Expect = 0.073
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 667 gagagcaagaagaagaagaag 687
|||||||||||||||||||||
Sbjct: 244 gagagcaagaagaagaagaag 224
>gb|CW325603.1|CW325603 104_820_11477776_116_35926_054 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11477776, DNA
sequence
Length = 607
Score = 42.1 bits (21), Expect = 0.073
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 632 gcccgccggtccccgcgccggcccc 656
||||||||| |||||||||||||||
Sbjct: 466 gcccgccggcccccgcgccggcccc 442
>gb|CW325604.1|CW325604 104_820_11477776_148_35927_054 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11477776, DNA
sequence
Length = 623
Score = 42.1 bits (21), Expect = 0.073
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 632 gcccgccggtccccgcgccggcccc 656
||||||||| |||||||||||||||
Sbjct: 462 gcccgccggcccccgcgccggcccc 486
>gb|CW391011.1|CW391011 fsbb001f076o24k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f076o24, DNA
sequence
Length = 701
Score = 42.1 bits (21), Expect = 0.073
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 667 gagagcaagaagaagaagaag 687
|||||||||||||||||||||
Sbjct: 218 gagagcaagaagaagaagaag 198
>gb|CW405637.1|CW405637 fsbb001f098e15k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f098e15, DNA
sequence
Length = 767
Score = 42.1 bits (21), Expect = 0.073
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 667 gagagcaagaagaagaagaag 687
|||||||||||||||||||||
Sbjct: 144 gagagcaagaagaagaagaag 124
>gb|CF484474.1|CF484474 POL1_25_B12.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_25_B12_A002 5', mRNA sequence
Length = 525
Score = 42.1 bits (21), Expect = 0.073
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 320 gcgccttctccgcgctccccg 340
|||||||||||||||||||||
Sbjct: 113 gcgccttctccgcgctccccg 133
>gb|CN128330.1|CN128330 RHOH1_28_F07.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_28_F07_A002 5', mRNA sequence
Length = 765
Score = 42.1 bits (21), Expect = 0.073
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 320 gcgccttctccgcgctccccg 340
|||||||||||||||||||||
Sbjct: 82 gcgccttctccgcgctccccg 102
>gb|CN131099.1|CN131099 RHOH1_45_H01.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_45_H01_A002 5', mRNA sequence
Length = 725
Score = 42.1 bits (21), Expect = 0.073
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 320 gcgccttctccgcgctccccg 340
|||||||||||||||||||||
Sbjct: 97 gcgccttctccgcgctccccg 117
>gb|CN137668.1|CN137668 OX1_58_F10.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_58_F10_A002 5', mRNA sequence
Length = 797
Score = 42.1 bits (21), Expect = 0.073
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 320 gcgccttctccgcgctccccg 340
|||||||||||||||||||||
Sbjct: 82 gcgccttctccgcgctccccg 102
>gb|CN139340.1|CN139340 OX1_21_A10.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_21_A10_A002 5', mRNA sequence
Length = 301
Score = 42.1 bits (21), Expect = 0.073
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 632 gcccgccggtccccgcgccggcccc 656
||||||||| |||||||||||||||
Sbjct: 298 gcccgccggcccccgcgccggcccc 274
>gb|CX608419.1|CX608419 ANR1_38_B09.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_38_B09_A002 5', mRNA sequence
Length = 420
Score = 42.1 bits (21), Expect = 0.073
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 632 gcccgccggtccccgcgccggcccc 656
||||||||| |||||||||||||||
Sbjct: 291 gcccgccggcccccgcgccggcccc 267
>gb|CX619649.1|CX619649 GABR1_46_H12.g1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_46_H12_A002 5', mRNA sequence
Length = 315
Score = 42.1 bits (21), Expect = 0.073
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 320 gcgccttctccgcgctccccg 340
|||||||||||||||||||||
Sbjct: 79 gcgccttctccgcgctccccg 99
>gb|CX622427.1|CX622427 GABR1_63_H06.g2_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_63_H06_A002 5', mRNA sequence
Length = 512
Score = 42.1 bits (21), Expect = 0.073
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 632 gcccgccggtccccgcgccggcccc 656
||||||||| |||||||||||||||
Sbjct: 309 gcccgccggcccccgcgccggcccc 285
>gb|CL150255.1|CL150255 104_331_10778391_114_31355_327 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10778391, DNA
sequence
Length = 632
Score = 40.1 bits (20), Expect = 0.29
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 135 ggcagcgtcggcgccgtccc 154
||||||||||||||||||||
Sbjct: 533 ggcagcgtcggcgccgtccc 552
>gb|CL150256.1|CL150256 104_331_10778391_116_31356_327 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10778391, DNA
sequence
Length = 392
Score = 40.1 bits (20), Expect = 0.29
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 135 ggcagcgtcggcgccgtccc 154
||||||||||||||||||||
Sbjct: 238 ggcagcgtcggcgccgtccc 219
>gb|CW057792.1|CW057792 104_300_10518407_5_30082 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10518407, DNA
sequence
Length = 435
Score = 40.1 bits (20), Expect = 0.29
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 668 agagcaagaagaagaagaag 687
||||||||||||||||||||
Sbjct: 254 agagcaagaagaagaagaag 273
>gb|CW120220.1|CW120220 104_497_11109203_116_34642_040 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11109203, DNA
sequence
Length = 642
Score = 40.1 bits (20), Expect = 0.29
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 405 cgcggcgctccccgccgcgc 424
||||||||||||||||||||
Sbjct: 342 cgcggcgctccccgccgcgc 361
>gb|CW120221.1|CW120221 104_497_11109203_148_34646_040 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11109203, DNA
sequence
Length = 579
Score = 40.1 bits (20), Expect = 0.29
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 405 cgcggcgctccccgccgcgc 424
||||||||||||||||||||
Sbjct: 406 cgcggcgctccccgccgcgc 387
>gb|CW200199.1|CW200199 104_625_11183931_116_36861_006 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11183931, DNA
sequence
Length = 761
Score = 40.1 bits (20), Expect = 0.29
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 422 cgcagctcgagaccgtcagc 441
||||||||||||||||||||
Sbjct: 213 cgcagctcgagaccgtcagc 232
>gb|CW218614.1|CW218614 104_652_11196284_148_37533_076 Sorghum methylation filtered
library (LibID: 104) Sorghum bicolor genomic clone
11196284, DNA sequence
Length = 315
Score = 40.1 bits (20), Expect = 0.29
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 68 tcgccgccgcccttctcctcgccgtcgtcgcc 99
|||||| |||||||||| |||||||||||||
Sbjct: 32 tcgccggcgcccttctcggcgccgtcgtcgcc 1
>gb|CW220496.1|CW220496 104_655_11197380_148_37454_046 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11197380, DNA
sequence
Length = 503
Score = 40.1 bits (20), Expect = 0.29
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 728 ctgcggcggggacgacgacg 747
||||||||||||||||||||
Sbjct: 105 ctgcggcggggacgacgacg 86
>gb|CW225325.1|CW225325 104_662_11204290_148_37205_033 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11204290, DNA
sequence
Length = 681
Score = 40.1 bits (20), Expect = 0.29
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 422 cgcagctcgagaccgtcagc 441
||||||||||||||||||||
Sbjct: 233 cgcagctcgagaccgtcagc 252
>gb|CW225497.1|CW225497 104_663_11204384_116_37214_030 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11204384, DNA
sequence
Length = 602
Score = 40.1 bits (20), Expect = 0.29
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 405 cgcggcgctccccgccgcgc 424
||||||||||||||||||||
Sbjct: 594 cgcggcgctccccgccgcgc 575
>gb|CW235975.1|CW235975 104_691_11215345_116_37404_003 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11215345, DNA
sequence
Length = 664
Score = 40.1 bits (20), Expect = 0.29
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 668 agagcaagaagaagaagaag 687
||||||||||||||||||||
Sbjct: 277 agagcaagaagaagaagaag 258
>gb|CW235976.1|CW235976 104_691_11215345_148_37401_003 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11215345, DNA
sequence
Length = 709
Score = 40.1 bits (20), Expect = 0.29
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 668 agagcaagaagaagaagaag 687
||||||||||||||||||||
Sbjct: 604 agagcaagaagaagaagaag 623
>gb|CW261937.1|CW261937 104_729_11229782_148_35206_059 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11229782, DNA
sequence
Length = 566
Score = 40.1 bits (20), Expect = 0.29
Identities = 35/40 (87%)
Strand = Plus / Minus
Query: 288 cggcgggctcacggtgttcgcgccgcccgacagcgccttc 327
||||||| ||||||||||||||| |||||| |||||||
Sbjct: 93 cggcgggtacacggtgttcgcgcccaccgacaacgccttc 54
>gb|CW320729.1|CW320729 104_813_11475165_116_35900_083 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11475165, DNA
sequence
Length = 522
Score = 40.1 bits (20), Expect = 0.29
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 135 ggcagcgtcggcgccgtccc 154
||||||||||||||||||||
Sbjct: 514 ggcagcgtcggcgccgtccc 495
>gb|CW320730.1|CW320730 104_813_11475165_148_35896_083 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11475165, DNA
sequence
Length = 694
Score = 40.1 bits (20), Expect = 0.29
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 135 ggcagcgtcggcgccgtccc 154
||||||||||||||||||||
Sbjct: 304 ggcagcgtcggcgccgtccc 323
>gb|CW322315.1|CW322315 104_816_11476031_148_35952_096 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11476031, DNA
sequence
Length = 516
Score = 40.1 bits (20), Expect = 0.29
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 135 ggcagcgtcggcgccgtccc 154
||||||||||||||||||||
Sbjct: 343 ggcagcgtcggcgccgtccc 362
>gb|CW355751.1|CW355751 fsbb001f020i13k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f020i13, DNA
sequence
Length = 708
Score = 40.1 bits (20), Expect = 0.29
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 731 cggcggggacgacgacggcg 750
||||||||||||||||||||
Sbjct: 484 cggcggggacgacgacggcg 503
>gb|CW361148.1|CW361148 fsbb001f029i23f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f029i23, DNA
sequence
Length = 505
Score = 40.1 bits (20), Expect = 0.29
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 396 cgtcgtgtccgcggcgctcc 415
||||||||||||||||||||
Sbjct: 59 cgtcgtgtccgcggcgctcc 78
>gb|CW368396.1|CW368396 fsbb001f042f13f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f042f13, DNA
sequence
Length = 577
Score = 40.1 bits (20), Expect = 0.29
Identities = 35/40 (87%)
Strand = Plus / Minus
Query: 288 cggcgggctcacggtgttcgcgccgcccgacagcgccttc 327
||||||| ||||||||||||||| |||||| |||||||
Sbjct: 104 cggcgggtacacggtgttcgcgcccaccgacaacgccttc 65
>gb|CW460973.1|CW460973 fsbb001f208g20f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f208g20, DNA
sequence
Length = 668
Score = 40.1 bits (20), Expect = 0.29
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 135 ggcagcgtcggcgccgtccc 154
||||||||||||||||||||
Sbjct: 150 ggcagcgtcggcgccgtccc 169
>gb|CW479157.1|CW479157 fsbb001f237h04k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f237h04, DNA
sequence
Length = 670
Score = 40.1 bits (20), Expect = 0.29
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 396 cgtcgtgtccgcggcgctcc 415
||||||||||||||||||||
Sbjct: 376 cgtcgtgtccgcggcgctcc 395
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 379,386
Number of Sequences: 832831
Number of extensions: 379386
Number of successful extensions: 133479
Number of sequences better than 0.5: 81
Number of HSP's better than 0.5 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 133198
Number of HSP's gapped (non-prelim): 267
length of query: 753
length of database: 491,359,669
effective HSP length: 20
effective length of query: 733
effective length of database: 474,703,049
effective search space: 347957334917
effective search space used: 347957334917
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)