BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 8010745.2.1
(805 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BE363478.1|BE363478 WS1_63_C10.g1_A002 Water-stressed 1 ... 295 3e-078
gb|CW041475.1|CW041475 104_275_10506567_114_30284 Sorghum m... 204 9e-051
gb|CW282382.1|CW282382 104_758_11408682_148_35472_073 Sorgh... 137 2e-030
gb|CW334205.1|CW334205 104_832_11482377_148_36053_037 Sorgh... 137 2e-030
gb|CW041476.1|CW041476 104_275_10506567_115_30285 Sorghum m... 101 1e-019
gb|CW282381.1|CW282381 104_758_11408682_116_35468_073 Sorgh... 101 1e-019
gb|CW334204.1|CW334204 104_832_11482377_116_36054_037 Sorgh... 101 1e-019
gb|CW449619.1|CW449619 fsbb001f183n17k0 Sorghum methylation... 101 1e-019
gb|CW038249.1|CW038249 104_270_10504817_114_30385 Sorghum m... 88 1e-015
gb|CD424752.1|CD424752 SA1_7_G09.b1_A002 Salicylic acid-tre... 88 1e-015
gb|CW077452.1|CW077452 104_381_10892527_116_31765_127 Sorgh... 68 1e-009
gb|CW077453.1|CW077453 104_381_10892527_148_31764_127 Sorgh... 68 1e-009
gb|CW112744.1|CW112744 104_486_11105051_116_34545_036 Sorgh... 68 1e-009
gb|CW112745.1|CW112745 104_486_11105051_148_34541_036 Sorgh... 68 1e-009
gb|CW128496.1|CW128496 104_510_11114036_148_34753_078 Sorgh... 68 1e-009
gb|CW164626.1|CW164626 104_572_11152084_148_36463_004 Sorgh... 68 1e-009
gb|CW143523.1|CW143523 104_535_11137466_116_34955_009 Sorgh... 64 2e-008
gb|CW143524.1|CW143524 104_535_11137466_148_34959_009 Sorgh... 64 2e-008
gb|CW391208.1|CW391208 fsbb001f077d18f0 Sorghum methylation... 64 2e-008
gb|CW472326.1|CW472326 fsbb001f227d11f0 Sorghum methylation... 62 8e-008
gb|CW081454.1|CW081454 104_419_10941845_116_32296_023 Sorgh... 60 3e-007
gb|CW190500.1|CW190500 104_612_11174536_148_36759_062 Sorgh... 60 3e-007
gb|CW210000.1|CW210000 104_640_11189560_116_37000_060 Sorgh... 60 3e-007
gb|CW457729.1|CW457729 fsbb001f203k19f0 Sorghum methylation... 60 3e-007
gb|CW457730.1|CW457730 fsbb001f203k19k0 Sorghum methylation... 60 3e-007
gb|AW284341.2|AW284341 LG1_275_C12.g1_A002 Light Grown 1 (L... 60 3e-007
gb|AW286529.2|AW286529 LG1_334_A07.g1_A002 Light Grown 1 (L... 60 3e-007
gb|AW677220.1|AW677220 DG1_6_D11.g1_A002 Dark Grown 1 (DG1)... 60 3e-007
gb|AW744827.1|AW744827 LG1_384_D09.g1_A002 Light Grown 1 (L... 60 3e-007
gb|AW922651.1|AW922651 DG1_20_B09.g1_A002 Dark Grown 1 (DG1... 60 3e-007
gb|AW923243.1|AW923243 DG1_50_B11.g1_A002 Dark Grown 1 (DG1... 60 3e-007
gb|AW923628.1|AW923628 DG1_56_E12.g1_A002 Dark Grown 1 (DG1... 60 3e-007
gb|BE356472.1|BE356472 DG1_125_D03.g1_A002 Dark Grown 1 (DG... 60 3e-007
gb|BE356746.1|BE356746 DG1_12_B04.g1_A002 Dark Grown 1 (DG1... 60 3e-007
gb|BE357387.1|BE357387 DG1_15_B06.b2_A002 Dark Grown 1 (DG1... 60 3e-007
gb|BE358119.1|BE358119 DG1_24_H05.g1_A002 Dark Grown 1 (DG1... 60 3e-007
gb|BE358884.1|BE358884 DG1_32_G02.g1_A002 Dark Grown 1 (DG1... 60 3e-007
gb|BE359233.1|BE359233 DG1_39_G12.g1_A002 Dark Grown 1 (DG1... 60 3e-007
gb|BE359750.1|BE359750 DG1_56_E12.g2_A002 Dark Grown 1 (DG1... 60 3e-007
gb|BE360002.1|BE360002 DG1_60_H01.g2_A002 Dark Grown 1 (DG1... 60 3e-007
gb|BE360562.1|BE360562 DG1_64_C07.b1_A002 Dark Grown 1 (DG1... 60 3e-007
gb|BE361214.1|BE361214 DG1_70_H03.g1_A002 Dark Grown 1 (DG1... 60 3e-007
gb|BE361473.1|BE361473 DG1_72_G02.g1_A002 Dark Grown 1 (DG1... 60 3e-007
gb|BG464390.1|BG464390 EM1_69_B10.g1_A002 Embryo 1 (EM1) So... 60 3e-007
gb|BG557199.1|BG557199 EM1_43_H09.g1_A002 Embryo 1 (EM1) So... 60 3e-007
gb|BG557200.1|BG557200 EM1_43_H10.g1_A002 Embryo 1 (EM1) So... 60 3e-007
gb|CD461465.1|CD461465 SA1_32_D07.b1_A002 Salicylic acid-tr... 60 3e-007
gb|CF430559.1|CF430559 NIT1_3_G08.b1_A002 Nitrogen-deficien... 60 3e-007
gb|CF433098.1|CF433098 NIT1_25_G09.b1_A002 Nitrogen-deficie... 60 3e-007
gb|CN128121.1|CN128121 RHOH1_27_D08.b1_A002 Acid- and alkal... 60 3e-007
gb|CX614275.1|CX614275 GABR1_13_C10.b1_A002 GA- or brassino... 60 3e-007
gb|CX614453.1|CX614453 GABR1_14_E02.b1_A002 GA- or brassino... 60 3e-007
gb|CX615129.1|CX615129 GABR1_18_G09.b1_A002 GA- or brassino... 60 3e-007
gb|CX616148.1|CX616148 GABR1_26_D10.b1_A002 GA- or brassino... 60 3e-007
gb|CX620938.1|CX620938 GABR1_55_B01.b1_A002 GA- or brassino... 60 3e-007
gb|U33817.1|SBU33817 Sorghum bicolor dhurrinase mRNA, nucle... 60 3e-007
gb|CW274641.1|CW274641 104_747_11404533_116_35374_085 Sorgh... 56 5e-006
gb|CW299705.1|CW299705 104_782_11463260_148_35687_068 Sorgh... 56 5e-006
gb|AW676919.1|AW676919 DG1_2_E11.b1_A002 Dark Grown 1 (DG1)... 56 5e-006
gb|BF587914.1|BF587914 FM1_34_D09.g1_A003 Floral-Induced Me... 56 5e-006
gb|CD234207.1|CD234207 SS1_26_D01.b1_A012 Salt-stressed see... 56 5e-006
gb|CW041974.1|CW041974 104_275_10506864_115_30285 Sorghum m... 54 2e-005
gb|CW226825.1|CW226825 104_665_11205092_116_37226_080 Sorgh... 54 2e-005
gb|CW373637.1|CW373637 fsbb001f050b24k0 Sorghum methylation... 54 2e-005
gb|CW389479.1|CW389479 fsbb001f074l04f0 Sorghum methylation... 54 2e-005
gb|CW493895.1|CW493895 fsbb001f284o06f0 Sorghum methylation... 54 2e-005
gb|CX615723.1|CX615723 GABR1_22_F02.b1_A002 GA- or brassino... 54 2e-005
gb|BF586059.1|BF586059 FM1_26_B07.g1_A003 Floral-Induced Me... 52 8e-005
gb|CN124461.1|CN124461 RHOH1_5_A02.b1_A002 Acid- and alkali... 52 8e-005
gb|CN144836.1|CN144836 WOUND1_25_F02.b2_A002 Wounded leaves... 50 3e-004
gb|CL194392.1|CL194392 104_418_10941600_114_32286_084 Sorgh... 48 0.001
gb|CL194393.1|CL194393 104_418_10941600_116_32290_084 Sorgh... 48 0.001
gb|CW070635.1|CW070635 104_321_10526885_5_30098 Sorghum met... 48 0.001
gb|CN151024.1|CN151024 WOUND1_73_B01.b1_A002 Wounded leaves... 46 0.005
gb|BE357382.1|BE357382 DG1_15_B11.b2_A002 Dark Grown 1 (DG1... 44 0.020
gb|BE594793.1|BE594793 PI1_45_E09.g1_A002 Pathogen induced ... 44 0.020
gb|BE918696.1|BE918696 FM1_1_D09.g1_A003 Floral-Induced Mer... 44 0.020
gb|BG322962.1|BG322962 EM1_13_C03.g1_A002 Embryo 1 (EM1) So... 44 0.020
gb|BG355803.1|BG355803 EM1_16_H10.g1_A002 Embryo 1 (EM1) So... 44 0.020
gb|BG412449.1|BG412449 OV2_34_C11.g1_A002 Ovary 2 (OV2) Sor... 44 0.020
gb|BG463211.1|BG463211 EM1_47_G10.g1_A002 Embryo 1 (EM1) So... 44 0.020
gb|BG463348.1|BG463348 EM1_48_D09.g1_A002 Embryo 1 (EM1) So... 44 0.020
gb|BG556673.1|BG556673 EM1_40_B08.g1_A002 Embryo 1 (EM1) So... 44 0.020
gb|BG557742.1|BG557742 EM1_56_D07.g1_A002 Embryo 1 (EM1) So... 44 0.020
gb|BM329553.1|BM329553 PIC1_39_F04.g1_A002 Pathogen-infecte... 44 0.020
gb|BM330591.1|BM330591 PIC1_54_A02.g1_A002 Pathogen-infecte... 44 0.020
gb|BM330874.1|BM330874 PIC1_57_F09.g1_A002 Pathogen-infecte... 44 0.020
gb|BM331059.1|BM331059 PIC1_69_B01.g1_A002 Pathogen-infecte... 44 0.020
gb|BM331271.1|BM331271 PIC1_71_H07.g1_A002 Pathogen-infecte... 44 0.020
gb|CD225406.1|CD225406 CCC1_3_E07.b1_A007 Callus culture/ce... 44 0.020
gb|CD231415.1|CD231415 SS1_16_C04.b1_A012 Salt-stressed see... 44 0.020
gb|CD425421.1|CD425421 SA1_12_H11.b1_A002 Salicylic acid-tr... 44 0.020
gb|CD427707.1|CD427707 SA1_38_E06.b1_A002 Salicylic acid-tr... 44 0.020
gb|CN148058.1|CN148058 WOUND1_54_A06.b1_A002 Wounded leaves... 44 0.020
gb|CW286115.1|CW286115 104_763_11410706_116_35510_003 Sorgh... 42 0.078
gb|CW286116.1|CW286116 104_763_11410706_148_35506_003 Sorgh... 42 0.078
gb|CF758727.1|CF758727 DSAF1_35_H08.g1_A011 Drought-stresse... 42 0.078
gb|BZ351778.1|BZ351778 hw09e11.g1 WGS-SbicolorF (JM107 adap... 40 0.31
gb|CL156225.1|CL156225 104_343_10782711_116_31476_039 Sorgh... 40 0.31
gb|CL169188.1|CL169188 104_367_10812453_116_31787_309 Sorgh... 40 0.31
gb|CL186141.1|CL186141 104_400_10900016_114_32401_020 Sorgh... 40 0.31
gb|CW021529.1|CW021529 104_160_10431314_1_30004 Sorghum met... 40 0.31
gb|CW439638.1|CW439638 fsbb001f157o06f0 Sorghum methylation... 40 0.31
gb|CW459563.1|CW459563 fsbb001f206f21k0 Sorghum methylation... 40 0.31
gb|CW476625.1|CW476625 fsbb001f233j03k0 Sorghum methylation... 40 0.31
gb|AW923660.1|AW923660 DG1_57_B08.g1_A002 Dark Grown 1 (DG1... 40 0.31
gb|BE359792.1|BE359792 DG1_57_B08.g2_A002 Dark Grown 1 (DG1... 40 0.31
gb|BG355936.2|BG355936 EM1_18_E01.g1_A002 Embryo 1 (EM1) So... 40 0.31
gb|CF071141.1|CF071141 FE1_15_H05.g1_A002 Iron-deficient se... 40 0.31
>gb|BE363478.1|BE363478 WS1_63_C10.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 524
Score = 295 bits (149), Expect = 3e-078
Identities = 225/251 (89%)
Strand = Plus / Minus
Query: 158 gtgaggaagccctggtaccacctcgcagacatccggngcgtcctctcctgggtgtcgaag 217
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||
Sbjct: 253 gtgaggaagccctggtaccacgtcgcagacatccggggcgtcctctcctgggtgtcgtag 194
Query: 218 tcnacgtggtacagcccgtacttcaacctgtaaccgaacgcccactcgaagttgtccagc 277
|| ||||||||||| ||| || ||| |||||||||||| ||||||||||||||||||
Sbjct: 193 tcgacgtggtacaggccgaacctcacggtgtaaccgaacgtccactcgaagttgtccagg 134
Query: 278 agcgtccacacgaagtagccccgcacgtttgctccgttcctgagtgctttggatagatac 337
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct: 133 agcgtccacacgaagtagccccgcacgtttgctccgttcctgactgctttggataggcat 74
Query: 338 gtgatgtagccctgcaggtagttcttcctcctcacatcgtcgatcagctcctccctgctg 397
|||| ||||||||||||||||||||| || ||| |||| ||||||| | |||||| ||
Sbjct: 73 gtgacgtagccctgcaggtagttctttcttgccacgtcgttgatcagcccttccctgttg 14
Query: 398 gcatcactcca 408
|||||||||||
Sbjct: 13 gcatcactcca 3
Score = 42.1 bits (21), Expect = 0.078
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 101 catcacgagtctgctctccgtgcct 125
||||||| |||||||||||||||||
Sbjct: 319 catcacgcgtctgctctccgtgcct 295
>gb|CW041475.1|CW041475 104_275_10506567_114_30284 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10506567, DNA
sequence
Length = 557
Score = 204 bits (103), Expect = 9e-051
Identities = 137/149 (91%)
Strand = Plus / Plus
Query: 158 gtgaggaagccctggtaccacctcgcagacatccggngcgtcctctcctgggtgtcgaag 217
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||
Sbjct: 409 gtgaggaagccctggtaccacgtcgcagacatccggggcgtcctctcctgggtgtcgtag 468
Query: 218 tcnacgtggtacagcccgtacttcaacctgtaaccgaacgcccactcgaagttgtccagc 277
|| ||||||||||| ||| || ||| |||||||||||| ||||||||||||||||||
Sbjct: 469 tcgacgtggtacaggccgaacctcacggtgtaaccgaacgtccactcgaagttgtccagg 528
Query: 278 agcgtccacacgaagtagccccgcacgtt 306
|||||||||||||||||||||||||||||
Sbjct: 529 agcgtccacacgaagtagccccgcacgtt 557
Score = 42.1 bits (21), Expect = 0.078
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 101 catcacgagtctgctctccgtgcct 125
||||||| |||||||||||||||||
Sbjct: 343 catcacgcgtctgctctccgtgcct 367
>gb|CW282382.1|CW282382 104_758_11408682_148_35472_073 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11408682, DNA
sequence
Length = 686
Score = 137 bits (69), Expect = 2e-030
Identities = 191/231 (82%), Gaps = 3/231 (1%)
Strand = Plus / Minus
Query: 523 atctcccccgatcttgaccccgtcgtccctttccccggtcgccgagacgaaggcgttccc 582
||||| ||||||||| |||||||| | |||||||||||||| |||| || ||||||||
Sbjct: 331 atctctcccgatcttcaccccgtcct---tttccccggtcgccaagacaaacgcgttccc 275
Query: 583 ttcgtacgacccgaggttgcacggggagcgcaggcagtccctggcgtagatcgccgtgta 642
|||||| | | |||||||||||||| | | ||||||| | ||||| |||||||||||
Sbjct: 274 ttcgtatgtctgaaggttgcacggggaatggatgcagtccttagcgtaaatcgccgtgta 215
Query: 643 gtggttcagcccgatgaagtccgccttgtaccgcagcagcagcgccttctcctccgcggt 702
|| |||||||||||||| |||| |||||| | ||||||||| |||||||||||||||
Sbjct: 214 atgattcagcccgatgaaatccggcttgtattgtagcagcagcttcttctcctccgcggt 155
Query: 703 gaaggtcggcaggtccgatcccaggatctcccgcatcgctccggggtaatc 753
|||||| |||| || ||| || |||||| |||||||||| ||||||||
Sbjct: 154 gaaggttggcaagtttgattgcaagatctctcgcatcgctctcgggtaatc 104
Score = 101 bits (51), Expect = 1e-019
Identities = 84/95 (88%)
Strand = Plus / Minus
Query: 418 accgttctcagtaatatacacaggcgtgcccttgtacctcccgttcacgtactggatagc 477
|||||||||||| |||||||| |||||| ||||||||||||||||||| || ||||||
Sbjct: 596 accgttctcagtgatatacaccggcgtgtccttgtacctcccgttcacaaacatgatagc 537
Query: 478 cagctctatggcctctgggacgtcgaagaaacctg 512
| |||||||||| |||||||| ||| |||||||||
Sbjct: 536 cggctctatggcttctgggacatcgtagaaacctg 502
>gb|CW334205.1|CW334205 104_832_11482377_148_36053_037 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11482377, DNA
sequence
Length = 648
Score = 137 bits (69), Expect = 2e-030
Identities = 191/231 (82%), Gaps = 3/231 (1%)
Strand = Plus / Minus
Query: 523 atctcccccgatcttgaccccgtcgtccctttccccggtcgccgagacgaaggcgttccc 582
||||| ||||||||| |||||||| | |||||||||||||| |||| || ||||||||
Sbjct: 466 atctctcccgatcttcaccccgtcct---tttccccggtcgccaagacaaacgcgttccc 410
Query: 583 ttcgtacgacccgaggttgcacggggagcgcaggcagtccctggcgtagatcgccgtgta 642
|||||| | | |||||||||||||| | | ||||||| | ||||| |||||||||||
Sbjct: 409 ttcgtatgtctgaaggttgcacggggaatggatgcagtccttagcgtaaatcgccgtgta 350
Query: 643 gtggttcagcccgatgaagtccgccttgtaccgcagcagcagcgccttctcctccgcggt 702
|| |||||||||||||| |||| |||||| | ||||||||| |||||||||||||||
Sbjct: 349 atgattcagcccgatgaaatccggcttgtattgtagcagcagcttcttctcctccgcggt 290
Query: 703 gaaggtcggcaggtccgatcccaggatctcccgcatcgctccggggtaatc 753
|||||| |||| || ||| || |||||| |||||||||| ||||||||
Sbjct: 289 gaaggttggcaagtttgattgcaagatctctcgcatcgctctcgggtaatc 239
>gb|CW041476.1|CW041476 104_275_10506567_115_30285 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10506567, DNA
sequence
Length = 554
Score = 101 bits (51), Expect = 1e-019
Identities = 84/95 (88%)
Strand = Plus / Minus
Query: 418 accgttctcagtaatatacacaggcgtgcccttgtacctcccgttcacgtactggatagc 477
|||||||||||| |||||||| |||||| ||||||||||||||||||| || ||||||
Sbjct: 316 accgttctcagtgatatacaccggcgtgtccttgtacctcccgttcacaaacatgatagc 257
Query: 478 cagctctatggcctctgggacgtcgaagaaacctg 512
| |||||||||| |||||||| ||| |||||||||
Sbjct: 256 cggctctatggcttctgggacatcgtagaaacctg 222
Score = 73.8 bits (37), Expect = 2e-011
Identities = 79/93 (84%)
Strand = Plus / Minus
Query: 316 cctgagtgctttggatagatacgtgatgtagccctgcaggtagttcttcctcctcacatc 375
||||| |||||||||||| | |||| ||||||||||||||||||||| || ||| ||
Sbjct: 538 cctgactgctttggataggcatgtgacgtagccctgcaggtagttctttcttgccacgtc 479
Query: 376 gtcgatcagctcctccctgctggcatcactcca 408
|| ||||||| | |||||| |||||||||||||
Sbjct: 478 gttgatcagcccttccctgttggcatcactcca 446
>gb|CW282381.1|CW282381 104_758_11408682_116_35468_073 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11408682, DNA
sequence
Length = 603
Score = 101 bits (51), Expect = 1e-019
Identities = 84/95 (88%)
Strand = Plus / Plus
Query: 418 accgttctcagtaatatacacaggcgtgcccttgtacctcccgttcacgtactggatagc 477
|||||||||||| |||||||| |||||| ||||||||||||||||||| || ||||||
Sbjct: 248 accgttctcagtgatatacaccggcgtgtccttgtacctcccgttcacaaacatgatagc 307
Query: 478 cagctctatggcctctgggacgtcgaagaaacctg 512
| |||||||||| |||||||| ||| |||||||||
Sbjct: 308 cggctctatggcttctgggacatcgtagaaacctg 342
Score = 73.8 bits (37), Expect = 2e-011
Identities = 79/93 (84%)
Strand = Plus / Plus
Query: 316 cctgagtgctttggatagatacgtgatgtagccctgcaggtagttcttcctcctcacatc 375
||||| |||||||||||| | |||| ||||||||||||||||||||| || ||| ||
Sbjct: 26 cctgactgctttggataggcatgtgacgtagccctgcaggtagttctttcttgccacgtc 85
Query: 376 gtcgatcagctcctccctgctggcatcactcca 408
|| ||||||| | |||||| |||||||||||||
Sbjct: 86 gttgatcagcccttccctgttggcatcactcca 118
Score = 58.0 bits (29), Expect = 1e-006
Identities = 73/87 (83%), Gaps = 3/87 (3%)
Strand = Plus / Plus
Query: 523 atctcccccgatcttgaccccgtcgtccctttccccggtcgccgagacgaaggcgttccc 582
||||| ||||||||| |||||||| | |||||||||||||| |||| || ||||||||
Sbjct: 513 atctctcccgatcttcaccccgtcct---tttccccggtcgccaagacaaacgcgttccc 569
Query: 583 ttcgtacgacccgaggttgcacgggga 609
|||||| | | ||||||||||||||
Sbjct: 570 ttcgtatgtctgaaggttgcacgggga 596
>gb|CW334204.1|CW334204 104_832_11482377_116_36054_037 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11482377, DNA
sequence
Length = 699
Score = 101 bits (51), Expect = 1e-019
Identities = 84/95 (88%)
Strand = Plus / Plus
Query: 418 accgttctcagtaatatacacaggcgtgcccttgtacctcccgttcacgtactggatagc 477
|||||||||||| |||||||| |||||| ||||||||||||||||||| || ||||||
Sbjct: 267 accgttctcagtgatatacaccggcgtgtccttgtacctcccgttcacaaacatgatagc 326
Query: 478 cagctctatggcctctgggacgtcgaagaaacctg 512
| |||||||||| |||||||| ||| |||||||||
Sbjct: 327 cggctctatggcttctgggacatcgtagaaacctg 361
Score = 87.7 bits (44), Expect = 1e-015
Identities = 115/138 (83%), Gaps = 3/138 (2%)
Strand = Plus / Plus
Query: 523 atctcccccgatcttgaccccgtcgtccctttccccggtcgccgagacgaaggcgttccc 582
||||| ||||||||| |||||||| | |||||||||||||| |||| || ||||||||
Sbjct: 532 atctctcccgatcttcaccccgtcct---tttccccggtcgccaagacaaacgcgttccc 588
Query: 583 ttcgtacgacccgaggttgcacggggagcgcaggcagtccctggcgtagatcgccgtgta 642
|||||| | | |||||||||||||| | | ||||||| | ||||| |||||||||||
Sbjct: 589 ttcgtatgtctgaaggttgcacggggaatggatgcagtccttagcgtaaatcgccgtgta 648
Query: 643 gtggttcagcccgatgaa 660
|| ||||||||||||||
Sbjct: 649 atgattcagcccgatgaa 666
Score = 73.8 bits (37), Expect = 2e-011
Identities = 79/93 (84%)
Strand = Plus / Plus
Query: 316 cctgagtgctttggatagatacgtgatgtagccctgcaggtagttcttcctcctcacatc 375
||||| |||||||||||| | |||| ||||||||||||||||||||| || ||| ||
Sbjct: 45 cctgactgctttggataggcatgtgacgtagccctgcaggtagttctttcttgccacgtc 104
Query: 376 gtcgatcagctcctccctgctggcatcactcca 408
|| ||||||| | |||||| |||||||||||||
Sbjct: 105 gttgatcagcccttccctgttggcatcactcca 137
>gb|CW449619.1|CW449619 fsbb001f183n17k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f183n17, DNA
sequence
Length = 724
Score = 101 bits (51), Expect = 1e-019
Identities = 84/95 (88%)
Strand = Plus / Plus
Query: 418 accgttctcagtaatatacacaggcgtgcccttgtacctcccgttcacgtactggatagc 477
|||||||||||| |||||||| |||||| ||||||||||||||||||| || ||||||
Sbjct: 384 accgttctcagtgatatacaccggcgtgtccttgtacctcccgttcacaaacatgatagc 443
Query: 478 cagctctatggcctctgggacgtcgaagaaacctg 512
| |||||||||| |||||||| ||| |||||||||
Sbjct: 444 cggctctatggcttctgggacatcgtagaaacctg 478
Score = 73.8 bits (37), Expect = 2e-011
Identities = 79/93 (84%)
Strand = Plus / Plus
Query: 316 cctgagtgctttggatagatacgtgatgtagccctgcaggtagttcttcctcctcacatc 375
||||| |||||||||||| | |||| ||||||||||||||||||||| || ||| ||
Sbjct: 162 cctgactgctttggataggcatgtgacgtagccctgcaggtagttctttcttgccacgtc 221
Query: 376 gtcgatcagctcctccctgctggcatcactcca 408
|| ||||||| | |||||| |||||||||||||
Sbjct: 222 gttgatcagcccttccctgttggcatcactcca 254
Score = 56.0 bits (28), Expect = 5e-006
Identities = 57/66 (86%), Gaps = 3/66 (4%)
Strand = Plus / Plus
Query: 523 atctcccccgatcttgaccccgtcgtccctttccccggtcgccgagacgaaggcgttccc 582
||||| ||||||||| |||||||| | |||||||||||||| |||| || ||||||||
Sbjct: 649 atctctcccgatcttcaccccgtcct---tttccccggtcgccaagacaaacgcgttccc 705
Query: 583 ttcgta 588
||||||
Sbjct: 706 ttcgta 711
>gb|CW038249.1|CW038249 104_270_10504817_114_30385 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10504817, DNA
sequence
Length = 817
Score = 87.7 bits (44), Expect = 1e-015
Identities = 101/120 (84%)
Strand = Plus / Plus
Query: 634 cgccgtgtagtggttcagcccgatgaagtccgccttgtaccgcagcagcagcgccttctc 693
||||||||| || |||||||||||||| |||| |||||| | ||||||||| ||||||
Sbjct: 10 cgccgtgtattgcttcagcccgatgaaatccggcttgtattgtagcagcagcttcttctc 69
Query: 694 ctccgcggtgaaggtcggcaggtccgatcccaggatctcccgcatcgctccggggtaatc 753
||||||||||||||| |||| || ||| || |||||| |||||||||| ||||||||
Sbjct: 70 ctccgcggtgaaggttggcaagtttgattgcaagatctctcgcatcgctctcgggtaatc 129
>gb|CD424752.1|CD424752 SA1_7_G09.b1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_7_G09_A002 3', mRNA sequence
Length = 454
Score = 87.7 bits (44), Expect = 1e-015
Identities = 49/51 (96%)
Strand = Plus / Minus
Query: 158 gtgaggaagccctggtaccacctcgcagacatccggngcgtcctctcctgg 208
||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct: 51 gtgaggaagccctggtaccacgtcgcagacatccggggcgtcctctcctgg 1
Score = 42.1 bits (21), Expect = 0.078
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 101 catcacgagtctgctctccgtgcct 125
||||||| |||||||||||||||||
Sbjct: 117 catcacgcgtctgctctccgtgcct 93
>gb|CW077452.1|CW077452 104_381_10892527_116_31765_127 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10892527, DNA
sequence
Length = 762
Score = 67.9 bits (34), Expect = 1e-009
Identities = 46/50 (92%)
Strand = Plus / Plus
Query: 263 tcgaagttgtccagcagcgtccacacgaagtagccccgcacgtttgctcc 312
||||||||||||||||| | |||| |||||||||| ||||||||||||||
Sbjct: 630 tcgaagttgtccagcagagaccacgcgaagtagccgcgcacgtttgctcc 679
>gb|CW077453.1|CW077453 104_381_10892527_148_31764_127 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10892527, DNA
sequence
Length = 769
Score = 67.9 bits (34), Expect = 1e-009
Identities = 46/50 (92%)
Strand = Plus / Minus
Query: 263 tcgaagttgtccagcagcgtccacacgaagtagccccgcacgtttgctcc 312
||||||||||||||||| | |||| |||||||||| ||||||||||||||
Sbjct: 417 tcgaagttgtccagcagagaccacgcgaagtagccgcgcacgtttgctcc 368
>gb|CW112744.1|CW112744 104_486_11105051_116_34545_036 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11105051, DNA
sequence
Length = 609
Score = 67.9 bits (34), Expect = 1e-009
Identities = 46/50 (92%)
Strand = Plus / Plus
Query: 263 tcgaagttgtccagcagcgtccacacgaagtagccccgcacgtttgctcc 312
||||||||||||||||| | |||| |||||||||| ||||||||||||||
Sbjct: 283 tcgaagttgtccagcagagaccacgcgaagtagccgcgcacgtttgctcc 332
>gb|CW112745.1|CW112745 104_486_11105051_148_34541_036 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11105051, DNA
sequence
Length = 609
Score = 67.9 bits (34), Expect = 1e-009
Identities = 46/50 (92%)
Strand = Plus / Minus
Query: 263 tcgaagttgtccagcagcgtccacacgaagtagccccgcacgtttgctcc 312
||||||||||||||||| | |||| |||||||||| ||||||||||||||
Sbjct: 325 tcgaagttgtccagcagagaccacgcgaagtagccgcgcacgtttgctcc 276
>gb|CW128496.1|CW128496 104_510_11114036_148_34753_078 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11114036, DNA
sequence
Length = 643
Score = 67.9 bits (34), Expect = 1e-009
Identities = 46/50 (92%)
Strand = Plus / Minus
Query: 263 tcgaagttgtccagcagcgtccacacgaagtagccccgcacgtttgctcc 312
||||||||||||||||| | |||| |||||||||| ||||||||||||||
Sbjct: 438 tcgaagttgtccagcagagaccacgcgaagtagccgcgcacgtttgctcc 389
>gb|CW164626.1|CW164626 104_572_11152084_148_36463_004 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11152084, DNA
sequence
Length = 704
Score = 67.9 bits (34), Expect = 1e-009
Identities = 46/50 (92%)
Strand = Plus / Minus
Query: 263 tcgaagttgtccagcagcgtccacacgaagtagccccgcacgtttgctcc 312
||||||||||||||||| | |||| |||||||||| ||||||||||||||
Sbjct: 137 tcgaagttgtccagcagagaccacgcgaagtagccgcgcacgtttgctcc 88
>gb|CW143523.1|CW143523 104_535_11137466_116_34955_009 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11137466, DNA
sequence
Length = 599
Score = 63.9 bits (32), Expect = 2e-008
Identities = 56/64 (87%)
Strand = Plus / Minus
Query: 256 cgcccactcgaagttgtccagcagcgtccacacgaagtagccccgcacgtttgctccgtt 315
|||||||||||||||||||||||||| |||| ||||||| ||| |||||| || ||||
Sbjct: 552 cgcccactcgaagttgtccagcagcgaccacgcgaagtatcccttcacgttggccccgtc 493
Query: 316 cctg 319
||||
Sbjct: 492 cctg 489
>gb|CW143524.1|CW143524 104_535_11137466_148_34959_009 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11137466, DNA
sequence
Length = 694
Score = 63.9 bits (32), Expect = 2e-008
Identities = 56/64 (87%)
Strand = Plus / Plus
Query: 256 cgcccactcgaagttgtccagcagcgtccacacgaagtagccccgcacgtttgctccgtt 315
|||||||||||||||||||||||||| |||| ||||||| ||| |||||| || ||||
Sbjct: 483 cgcccactcgaagttgtccagcagcgaccacgcgaagtatcccttcacgttggccccgtc 542
Query: 316 cctg 319
||||
Sbjct: 543 cctg 546
>gb|CW391208.1|CW391208 fsbb001f077d18f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f077d18, DNA
sequence
Length = 682
Score = 63.9 bits (32), Expect = 2e-008
Identities = 56/64 (87%)
Strand = Plus / Minus
Query: 256 cgcccactcgaagttgtccagcagcgtccacacgaagtagccccgcacgtttgctccgtt 315
|||||||||||||||||||||||||| |||| ||||||| ||| |||||| || ||||
Sbjct: 418 cgcccactcgaagttgtccagcagcgaccacgcgaagtatcccttcacgttggccccgtc 359
Query: 316 cctg 319
||||
Sbjct: 358 cctg 355
>gb|CW472326.1|CW472326 fsbb001f227d11f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f227d11, DNA
sequence
Length = 449
Score = 61.9 bits (31), Expect = 8e-008
Identities = 46/51 (90%)
Strand = Plus / Plus
Query: 262 ctcgaagttgtccagcagcgtccacacgaagtagccccgcacgtttgctcc 312
|||||||||||||||||| | |||| |||||||||| ||||||| ||||||
Sbjct: 280 ctcgaagttgtccagcagagaccacgcgaagtagccgcgcacgtctgctcc 330
>gb|CW081454.1|CW081454 104_419_10941845_116_32296_023 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10941845, DNA
sequence
Length = 693
Score = 60.0 bits (30), Expect = 3e-007
Identities = 45/50 (90%)
Strand = Plus / Minus
Query: 263 tcgaagttgtccagcagcgtccacacgaagtagccccgcacgtttgctcc 312
||||||||||||||||| | |||| |||||||||| ||||||| ||||||
Sbjct: 231 tcgaagttgtccagcagagaccacgcgaagtagccgcgcacgtctgctcc 182
>gb|CW190500.1|CW190500 104_612_11174536_148_36759_062 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11174536, DNA
sequence
Length = 596
Score = 60.0 bits (30), Expect = 3e-007
Identities = 45/50 (90%)
Strand = Plus / Minus
Query: 263 tcgaagttgtccagcagcgtccacacgaagtagccccgcacgtttgctcc 312
||||||||||||||||| | |||| |||||||||| ||||||| ||||||
Sbjct: 482 tcgaagttgtccagcagagaccacgcgaagtagccgcgcacgtctgctcc 433
>gb|CW210000.1|CW210000 104_640_11189560_116_37000_060 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11189560, DNA
sequence
Length = 665
Score = 60.0 bits (30), Expect = 3e-007
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 263 tcgaagttgtccagcagcgtccacacgaagtagccccgcacgtttgctcc 312
||||||||||||||||| | |||| |||||||||| ||||||| ||||||
Sbjct: 593 tcgaagttgtccagcagagaccacgcgaagtagccgcgcacgtctgctcc 642
>gb|CW457729.1|CW457729 fsbb001f203k19f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f203k19, DNA
sequence
Length = 722
Score = 60.0 bits (30), Expect = 3e-007
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 263 tcgaagttgtccagcagcgtccacacgaagtagccccgcacgtttgctcc 312
||||||||||||||||| | |||| |||||||||| ||||||| ||||||
Sbjct: 620 tcgaagttgtccagcagagaccacgcgaagtagccgcgcacgtctgctcc 669
>gb|CW457730.1|CW457730 fsbb001f203k19k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f203k19, DNA
sequence
Length = 751
Score = 60.0 bits (30), Expect = 3e-007
Identities = 45/50 (90%)
Strand = Plus / Minus
Query: 263 tcgaagttgtccagcagcgtccacacgaagtagccccgcacgtttgctcc 312
||||||||||||||||| | |||| |||||||||| ||||||| ||||||
Sbjct: 544 tcgaagttgtccagcagagaccacgcgaagtagccgcgcacgtctgctcc 495
>gb|AW284341.2|AW284341 LG1_275_C12.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 178
Score = 60.0 bits (30), Expect = 3e-007
Identities = 45/50 (90%)
Strand = Plus / Minus
Query: 263 tcgaagttgtccagcagcgtccacacgaagtagccccgcacgtttgctcc 312
||||||||||||||||| | |||| |||||||||| ||||||| ||||||
Sbjct: 68 tcgaagttgtccagcagagaccacgcgaagtagccgcgcacgtctgctcc 19
>gb|AW286529.2|AW286529 LG1_334_A07.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 415
Score = 60.0 bits (30), Expect = 3e-007
Identities = 45/50 (90%)
Strand = Plus / Minus
Query: 263 tcgaagttgtccagcagcgtccacacgaagtagccccgcacgtttgctcc 312
||||||||||||||||| | |||| |||||||||| ||||||| ||||||
Sbjct: 106 tcgaagttgtccagcagagaccacgcgaagtagccgcgcacgtctgctcc 57
>gb|AW677220.1|AW677220 DG1_6_D11.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 497
Score = 60.0 bits (30), Expect = 3e-007
Identities = 45/50 (90%)
Strand = Plus / Minus
Query: 263 tcgaagttgtccagcagcgtccacacgaagtagccccgcacgtttgctcc 312
||||||||||||||||| | |||| |||||||||| ||||||| ||||||
Sbjct: 107 tcgaagttgtccagcagagaccacgcgaagtagccgcgcacgtctgctcc 58
>gb|AW744827.1|AW744827 LG1_384_D09.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 449
Score = 60.0 bits (30), Expect = 3e-007
Identities = 45/50 (90%)
Strand = Plus / Minus
Query: 263 tcgaagttgtccagcagcgtccacacgaagtagccccgcacgtttgctcc 312
||||||||||||||||| | |||| |||||||||| ||||||| ||||||
Sbjct: 71 tcgaagttgtccagcagagaccacgcgaagtagccgcgcacgtctgctcc 22
>gb|AW922651.1|AW922651 DG1_20_B09.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 459
Score = 60.0 bits (30), Expect = 3e-007
Identities = 45/50 (90%)
Strand = Plus / Minus
Query: 263 tcgaagttgtccagcagcgtccacacgaagtagccccgcacgtttgctcc 312
||||||||||||||||| | |||| |||||||||| ||||||| ||||||
Sbjct: 90 tcgaagttgtccagcagagaccacgcgaagtagccgcgcacgtctgctcc 41
>gb|AW923243.1|AW923243 DG1_50_B11.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 589
Score = 60.0 bits (30), Expect = 3e-007
Identities = 45/50 (90%)
Strand = Plus / Minus
Query: 263 tcgaagttgtccagcagcgtccacacgaagtagccccgcacgtttgctcc 312
||||||||||||||||| | |||| |||||||||| ||||||| ||||||
Sbjct: 222 tcgaagttgtccagcagagaccacgcgaagtagccgcgcacgtctgctcc 173
>gb|AW923628.1|AW923628 DG1_56_E12.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 404
Score = 60.0 bits (30), Expect = 3e-007
Identities = 45/50 (90%)
Strand = Plus / Minus
Query: 263 tcgaagttgtccagcagcgtccacacgaagtagccccgcacgtttgctcc 312
||||||||||||||||| | |||| |||||||||| ||||||| ||||||
Sbjct: 109 tcgaagttgtccagcagagaccacgcgaagtagccgcgcacgtctgctcc 60
>gb|BE356472.1|BE356472 DG1_125_D03.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 457
Score = 60.0 bits (30), Expect = 3e-007
Identities = 45/50 (90%)
Strand = Plus / Minus
Query: 263 tcgaagttgtccagcagcgtccacacgaagtagccccgcacgtttgctcc 312
||||||||||||||||| | |||| |||||||||| ||||||| ||||||
Sbjct: 145 tcgaagttgtccagcagagaccacgcgaagtagccgcgcacgtctgctcc 96
>gb|BE356746.1|BE356746 DG1_12_B04.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 572
Score = 60.0 bits (30), Expect = 3e-007
Identities = 45/50 (90%)
Strand = Plus / Minus
Query: 263 tcgaagttgtccagcagcgtccacacgaagtagccccgcacgtttgctcc 312
||||||||||||||||| | |||| |||||||||| ||||||| ||||||
Sbjct: 337 tcgaagttgtccagcagagaccacgcgaagtagccgcgcacgtctgctcc 288
>gb|BE357387.1|BE357387 DG1_15_B06.b2_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 601
Score = 60.0 bits (30), Expect = 3e-007
Identities = 45/50 (90%)
Strand = Plus / Minus
Query: 263 tcgaagttgtccagcagcgtccacacgaagtagccccgcacgtttgctcc 312
||||||||||||||||| | |||| |||||||||| ||||||| ||||||
Sbjct: 520 tcgaagttgtccagcagagaccacgcgaagtagccgcgcacgtctgctcc 471
>gb|BE358119.1|BE358119 DG1_24_H05.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 685
Score = 60.0 bits (30), Expect = 3e-007
Identities = 45/50 (90%)
Strand = Plus / Minus
Query: 263 tcgaagttgtccagcagcgtccacacgaagtagccccgcacgtttgctcc 312
||||||||||||||||| | |||| |||||||||| ||||||| ||||||
Sbjct: 362 tcgaagttgtccagcagagaccacgcgaagtagccgcgcacgtctgctcc 313
>gb|BE358884.1|BE358884 DG1_32_G02.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 640
Score = 60.0 bits (30), Expect = 3e-007
Identities = 45/50 (90%)
Strand = Plus / Minus
Query: 263 tcgaagttgtccagcagcgtccacacgaagtagccccgcacgtttgctcc 312
||||||||||||||||| | |||| |||||||||| ||||||| ||||||
Sbjct: 365 tcgaagttgtccagcagagaccacgcgaagtagccgcgcacgtctgctcc 316
>gb|BE359233.1|BE359233 DG1_39_G12.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 596
Score = 60.0 bits (30), Expect = 3e-007
Identities = 45/50 (90%)
Strand = Plus / Minus
Query: 263 tcgaagttgtccagcagcgtccacacgaagtagccccgcacgtttgctcc 312
||||||||||||||||| | |||| |||||||||| ||||||| ||||||
Sbjct: 227 tcgaagttgtccagcagagaccacgcgaagtagccgcgcacgtctgctcc 178
>gb|BE359750.1|BE359750 DG1_56_E12.g2_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 285
Score = 60.0 bits (30), Expect = 3e-007
Identities = 45/50 (90%)
Strand = Plus / Minus
Query: 263 tcgaagttgtccagcagcgtccacacgaagtagccccgcacgtttgctcc 312
||||||||||||||||| | |||| |||||||||| ||||||| ||||||
Sbjct: 107 tcgaagttgtccagcagagaccacgcgaagtagccgcgcacgtctgctcc 58
>gb|BE360002.1|BE360002 DG1_60_H01.g2_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 623
Score = 60.0 bits (30), Expect = 3e-007
Identities = 45/50 (90%)
Strand = Plus / Minus
Query: 263 tcgaagttgtccagcagcgtccacacgaagtagccccgcacgtttgctcc 312
||||||||||||||||| | |||| |||||||||| ||||||| ||||||
Sbjct: 265 tcgaagttgtccagcagagaccacgcgaagtagccgcgcacgtctgctcc 216
>gb|BE360562.1|BE360562 DG1_64_C07.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 563
Score = 60.0 bits (30), Expect = 3e-007
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 263 tcgaagttgtccagcagcgtccacacgaagtagccccgcacgtttgctcc 312
||||||||||||||||| | |||| |||||||||| ||||||| ||||||
Sbjct: 339 tcgaagttgtccagcagagaccacgcgaagtagccgcgcacgtctgctcc 388
>gb|BE361214.1|BE361214 DG1_70_H03.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 596
Score = 60.0 bits (30), Expect = 3e-007
Identities = 45/50 (90%)
Strand = Plus / Minus
Query: 263 tcgaagttgtccagcagcgtccacacgaagtagccccgcacgtttgctcc 312
||||||||||||||||| | |||| |||||||||| ||||||| ||||||
Sbjct: 209 tcgaagttgtccagcagagaccacgcgaagtagccgcgcacgtctgctcc 160
>gb|BE361473.1|BE361473 DG1_72_G02.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 690
Score = 60.0 bits (30), Expect = 3e-007
Identities = 45/50 (90%)
Strand = Plus / Minus
Query: 263 tcgaagttgtccagcagcgtccacacgaagtagccccgcacgtttgctcc 312
||||||||||||||||| | |||| |||||||||| ||||||| ||||||
Sbjct: 292 tcgaagttgtccagcagagaccacgcgaagtagccgcgcacgtctgctcc 243
>gb|BG464390.1|BG464390 EM1_69_B10.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 562
Score = 60.0 bits (30), Expect = 3e-007
Identities = 45/50 (90%)
Strand = Plus / Minus
Query: 263 tcgaagttgtccagcagcgtccacacgaagtagccccgcacgtttgctcc 312
||||||||||||||||| | |||| |||||||||| ||||||| ||||||
Sbjct: 340 tcgaagttgtccagcagagaccacgcgaagtagccgcgcacgtctgctcc 291
>gb|BG557199.1|BG557199 EM1_43_H09.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 538
Score = 60.0 bits (30), Expect = 3e-007
Identities = 45/50 (90%)
Strand = Plus / Minus
Query: 263 tcgaagttgtccagcagcgtccacacgaagtagccccgcacgtttgctcc 312
||||||||||||||||| | |||| |||||||||| ||||||| ||||||
Sbjct: 179 tcgaagttgtccagcagagaccacgcgaagtagccgcgcacgtctgctcc 130
>gb|BG557200.1|BG557200 EM1_43_H10.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 470
Score = 60.0 bits (30), Expect = 3e-007
Identities = 45/50 (90%)
Strand = Plus / Minus
Query: 263 tcgaagttgtccagcagcgtccacacgaagtagccccgcacgtttgctcc 312
||||||||||||||||| | |||| |||||||||| ||||||| ||||||
Sbjct: 152 tcgaagttgtccagcagagaccacgcgaagtagccgcgcacgtctgctcc 103
>gb|CD461465.1|CD461465 SA1_32_D07.b1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_32_D07_A002 3', mRNA sequence
Length = 597
Score = 60.0 bits (30), Expect = 3e-007
Identities = 45/50 (90%)
Strand = Plus / Minus
Query: 263 tcgaagttgtccagcagcgtccacacgaagtagccccgcacgtttgctcc 312
||||||||||||||||| | |||| |||||||||| ||||||| ||||||
Sbjct: 224 tcgaagttgtccagcagagaccacgcgaagtagccgcgcacgtctgctcc 175
>gb|CF430559.1|CF430559 NIT1_3_G08.b1_A002 Nitrogen-deficient seedlings Sorghum bicolor
cDNA clone NIT1_3_G08_A002 3', mRNA sequence
Length = 588
Score = 60.0 bits (30), Expect = 3e-007
Identities = 45/50 (90%)
Strand = Plus / Minus
Query: 263 tcgaagttgtccagcagcgtccacacgaagtagccccgcacgtttgctcc 312
||||||||||||||||| | |||| |||||||||| ||||||| ||||||
Sbjct: 210 tcgaagttgtccagcagagaccacgcgaagtagccgcgcacgtctgctcc 161
>gb|CF433098.1|CF433098 NIT1_25_G09.b1_A002 Nitrogen-deficient seedlings Sorghum bicolor
cDNA clone NIT1_25_G09_A002 3', mRNA sequence
Length = 691
Score = 60.0 bits (30), Expect = 3e-007
Identities = 45/50 (90%)
Strand = Plus / Minus
Query: 263 tcgaagttgtccagcagcgtccacacgaagtagccccgcacgtttgctcc 312
||||||||||||||||| | |||| |||||||||| ||||||| ||||||
Sbjct: 310 tcgaagttgtccagcagagaccacgcgaagtagccgcgcacgtctgctcc 261
>gb|CN128121.1|CN128121 RHOH1_27_D08.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_27_D08_A002 3', mRNA sequence
Length = 840
Score = 60.0 bits (30), Expect = 3e-007
Identities = 45/50 (90%)
Strand = Plus / Minus
Query: 263 tcgaagttgtccagcagcgtccacacgaagtagccccgcacgtttgctcc 312
||||||||||||||||| | |||| |||||||||| ||||||| ||||||
Sbjct: 463 tcgaagttgtccagcagagaccacgcgaagtagccgcgcacgtctgctcc 414
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 194,236
Number of Sequences: 832831
Number of extensions: 194236
Number of successful extensions: 48604
Number of sequences better than 0.5: 109
Number of HSP's better than 0.5 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 48472
Number of HSP's gapped (non-prelim): 128
length of query: 805
length of database: 491,359,669
effective HSP length: 20
effective length of query: 785
effective length of database: 474,703,049
effective search space: 372641893465
effective search space used: 372641893465
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)