BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 8010496.2.1
(1046 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CD220536.1|CD220536 CCC1_67_H06.g1_A007 Callus culture/c... 720 0.0
gb|CX617846.1|CX617846 GABR1_36_D11.b1_A002 GA- or brassino... 624 e-177
gb|CX619537.1|CX619537 GABR1_46_D02.b1_A002 GA- or brassino... 611 e-173
gb|CF071078.1|CF071078 FE1_15_D12.b1_A002 Iron-deficient se... 593 e-167
gb|CX611325.1|CX611325 ANR1_24_B05.b1_A002 Anaerobic roots ... 589 e-166
gb|CX613114.1|CX613114 GABR1_6_G11.b1_A002 GA- or brassinol... 585 e-165
gb|BE357367.1|BE357367 DG1_148_A07.g1_A002 Dark Grown 1 (DG... 579 e-163
gb|CD220430.1|CD220430 CCC1_67_H06.b1_A007 Callus culture/c... 511 e-143
gb|CW022238.1|CW022238 104_161_10431724_1_30006 Sorghum met... 505 e-141
gb|CW164356.1|CW164356 104_572_11151945_148_36462_041 Sorgh... 505 e-141
gb|CW236952.1|CW236952 104_693_11215895_148_37519_094 Sorgh... 505 e-141
gb|CW388822.1|CW388822 fsbb001f073l23f0 Sorghum methylation... 505 e-141
gb|CW164355.1|CW164355 104_572_11151945_116_36461_041 Sorgh... 500 e-139
gb|CW230233.1|CW230233 104_671_11207740_116_37270_002 Sorgh... 500 e-139
gb|CX616301.1|CX616301 GABR1_27_D03.b1_A002 GA- or brassino... 462 e-128
gb|CD205740.1|CD205740 HS1_18_E08.b1_A012 Heat-shocked seed... 460 e-127
gb|CW459444.1|CW459444 fsbb001f206d04f0 Sorghum methylation... 363 2e-098
gb|CW022239.1|CW022239 104_161_10431724_5_30007 Sorghum met... 285 4e-075
gb|BZ338704.1|BZ338704 ia97c08.g1 WGS-SbicolorF (JM107 adap... 270 2e-070
gb|CW269890.1|CW269890 104_741_11402081_116_35322_075 Sorgh... 270 2e-070
gb|CW484465.1|CW484465 fsbb001f246j24f0 Sorghum methylation... 254 1e-065
gb|CW230234.1|CW230234 104_671_11207740_148_37266_002 Sorgh... 248 9e-064
gb|CW451021.1|CW451021 fsbb001f189o18k0 Sorghum methylation... 246 3e-063
gb|CW216644.1|CW216644 104_649_11195227_116_37125_072 Sorgh... 236 3e-060
gb|CW236951.1|CW236951 104_693_11215895_116_37512_094 Sorgh... 220 2e-055
gb|BE353094.1|BE353094 DG1_4_F07.g1_A002 Dark Grown 1 (DG1)... 196 3e-048
gb|CW050340.1|CW050340 104_290_10514603_115_30205 Sorghum m... 186 3e-045
gb|CW388823.1|CW388823 fsbb001f073l23k0 Sorghum methylation... 119 5e-025
gb|CL152796.1|CL152796 104_336_10780238_114_31365_254 Sorgh... 96 8e-018
gb|CW258955.1|CW258955 104_725_11228161_116_35182_013 Sorgh... 96 8e-018
gb|CW216645.1|CW216645 104_649_11195227_148_37126_072 Sorgh... 80 5e-013
gb|CW383134.1|CW383134 fsbb001f065h18f0 Sorghum methylation... 62 1e-007
gb|CF481671.1|CF481671 POL1_73_G11.b1_A002 Pollen Sorghum b... 62 1e-007
gb|CL182230.1|CL182230 104_393_10897285_116_31922_277 Sorgh... 56 7e-006
gb|CD225907.1|CD225907 CCC1_42_G11.b1_A007 Callus culture/c... 50 4e-004
gb|CW073535.1|CW073535 104_336_10780238_116_31366_254 Sorgh... 46 0.007
gb|CW091140.1|CW091140 104_451_10997705_116_32541_033 Sorgh... 42 0.10
gb|CW159691.1|CW159691 104_566_11149490_148_36423_015 Sorgh... 40 0.40
gb|CW163891.1|CW163891 104_571_11151698_116_36456_003 Sorgh... 40 0.40
gb|CW212992.1|CW212992 104_644_11191313_116_37026_073 Sorgh... 40 0.40
gb|CW407797.1|CW407797 fsbb001f101g18f0 Sorghum methylation... 40 0.40
gb|CW407798.1|CW407798 fsbb001f101g18k0 Sorghum methylation... 40 0.40
gb|CD220687.1|CD220687 CCC1_68_E02.g1_A007 Callus culture/c... 40 0.40
>gb|CD220536.1|CD220536 CCC1_67_H06.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_67_H06_A007 5', mRNA sequence
Length = 645
Score = 720 bits (363), Expect = 0.0
Identities = 492/540 (91%), Gaps = 1/540 (0%)
Strand = Plus / Minus
Query: 425 cgccacttgtagccgccggtgcacgagtacttgacgccgttgtgcggcgtggacgcgcca 484
||||||| |||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct: 639 cgccactngtagccgccggtgcacgaatacttgacgccgttgtgaggcgtggacgcgcca 580
Query: 485 cggtggtgcacgtgccgtgggtacttgctgccgaacccaaccacgtagctcatcttcttg 544
|||||||||| |||||| |||||||| ||||||| ||||||||||||||||||||||||
Sbjct: 579 cggtggtgcaggtgccgcgggtactttttgccgaaaccaaccacgtagctcatcttcttg 520
Query: 545 gggttgtcaccgagaatgtagttgatctgagacctggcgaactcacggaggtcgttggtg 604
||||||||||| ||||||||||||||||||||| | |||||||| ||||||||||||||
Sbjct: 519 gggttgtcaccaagaatgtagttgatctgagactttgcgaactcccggaggtcgttggtt 460
Query: 605 gtcatgaagtttggaccgcagtaccagccggggacgttgacggcctccatgtagtcggcg 664
|||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct: 459 gtcatgaagtttggcccgcagtaccatccggggacgttgactgcctccatgtagtcggcg 400
Query: 665 tagagcgcagcgagaaaggagttggcgacgacgtactgcagcggctgccccctgccgtgg 724
|||||||| |||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 399 tagagcgcggcgatgaaggagttggcgacgacgtactgcagcggctgccccttgccgtgg 340
Query: 725 ttgaagagcgccatcccgcccttnggtgaagttgaaggcggcgaagcccggaaagtacat 784
||||||||||||||||| ||||| |||||||||||||| | |||||| ||| ||||||||
Sbjct: 339 ttgaagagcgccatccctccctt-ggtgaagttgaaggagccgaagcgcgggaagtacat 281
Query: 785 gcacatgttgaggctggtggcgttgtggtagccggcgagcgannnntcgtacgggtagcc 844
|||||||||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct: 280 gcacatgttgaggctggtggcgttgtggtagccgatgagcgactcctcgtacgggtagcc 221
Query: 845 ggggttgaggaacatgcgcagccgcgncagcagcagctgggcgcccgggagctnnnnntc 904
||||||||||||||||||||||||| |||||||||||| ||||||||||||| ||
Sbjct: 220 cgggttgaggaacatgcgcagccgcgacagcagcagctgcgcgcccgggagcttgttgtc 161
Query: 905 ccagctgaacacnnagaagtcgaggatgttgangnnnnccttggcgtncttgggcagccg 964
|||||||||||| |||||||||||||||||| | ||||||||| ||||||||||||
Sbjct: 160 ccagctgaacaccgagaagtcgaggatgttgaagaaggccttggcgttcttgggcagccg 101
>gb|CX617846.1|CX617846 GABR1_36_D11.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_36_D11_A002 3', mRNA sequence
Length = 720
Score = 624 bits (315), Expect = e-177
Identities = 461/507 (90%), Gaps = 4/507 (0%)
Strand = Plus / Minus
Query: 161 ggcttccatgatgacggtggtggcggcgcggcggggaacattgtgcggcacggcggagaa 220
||||||||||| ||||| || ||||||||||| |||||||||| ||||||||||||||||
Sbjct: 505 ggcttccatgacgacggcggcggcggcgcggcagggaacattg-gcggcacggcggagaa 447
Query: 221 catggtgttcttgtcgacggcggttacggag-ctcccctgccgctgctggtgagagccac 279
|||||||||||||||||||||||| | | | |||||||||||||| |||||||||||||
Sbjct: 446 catggtgttcttgtcgacggcggtaatgccgactcccctgccgctgttggtgagagccac 387
Query: 280 cagggccgcgacgaggccggcgttgcctgaccagcgtcggctcgttctgcccgaag-tgt 338
||||||||| |||||||||||||||||| || |||||||||||||||||||||||| |||
Sbjct: 386 cagggccgccacgaggccggcgttgcct-acaagcgtcggctcgttctgcccgaaggtgt 328
Query: 339 tgcgcgagtccttgaagccgtcgttcttgtcgggcccgccgaccatggnnnnnnnnagca 398
|||||||||||||||||||||||||| |||| |||||||||||||||| ||||
Sbjct: 327 tgcgcgagtccttgaagccgtcgttcctgtctggcccgccgaccatggcgcccgtcagca 268
Query: 399 ggttggggtccgctttcttgctgtcgcgccacttgtagccgccggtgcacgagtacttga 458
|||||||||| || |||||| ||| |||||||||||||||||||||||||| |||||||
Sbjct: 267 ggttggggtctgccttcttggagtctcgccacttgtagccgccggtgcacgaatacttga 208
Query: 459 cgccgttgtgcggcgtggacgcgccacggtggtgcacgtgccgtgggtacttgctgccga 518
|||||||||| ||||||||||||||||||||||||| |||||| |||||||| ||||||
Sbjct: 207 cgccgttgtgaggcgtggacgcgccacggtggtgcaggtgccgcgggtactttttgccga 148
Query: 519 acccaaccacgtagctcatcttcttggggttgtcaccgagaatgtagttgatctgagacc 578
| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 147 aaccaaccacgtagctcatcttcttggggttgtcaccaagaatgtagttgatctgagact 88
Query: 579 tggcgaactcacggaggtcgttggtggtcatgaagtttggaccgcagtaccagccgggga 638
| |||||||| |||||||||||||| |||||||||||||| ||||||||||| ||||||
Sbjct: 87 ttgcgaactcccggaggtcgttggttgtcatgaagtttggcccgcagtaccatccggggg 28
Query: 639 cgttgacggcctccatgtagtcggcgt 665
||||||| |||||||||||||||||||
Sbjct: 27 cgttgactgcctccatgtagtcggcgt 1
Score = 44.1 bits (22), Expect = 0.026
Identities = 37/41 (90%), Gaps = 2/41 (4%)
Strand = Plus / Minus
Query: 78 gtggtattgtacagaagagaattcgcgcgcgtacgtgatcg 118
||||||||||||| |||| |||||||||||||| ||||||
Sbjct: 616 gtggtattgtacaaaaga--attcgcgcgcgtacatgatcg 578
>gb|CX619537.1|CX619537 GABR1_46_D02.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_46_D02_A002 3', mRNA sequence
Length = 708
Score = 611 bits (308), Expect = e-173
Identities = 451/496 (90%), Gaps = 4/496 (0%)
Strand = Plus / Minus
Query: 161 ggcttccatgatgacggtggtggcggcgcggcggggaacattgtgcggcacggcggagaa 220
||||||||||| ||||| || ||||||||||| |||||||||| ||||||||||||||||
Sbjct: 494 ggcttccatgacgacggcggcggcggcgcggcagggaacattg-gcggcacggcggagaa 436
Query: 221 catggtgttcttgtcgacggcggttacggag-ctcccctgccgctgctggtgagagccac 279
|||||||||||||||||||||||| | | | |||||||||||||| |||||||||||||
Sbjct: 435 catggtgttcttgtcgacggcggtaatgccgactcccctgccgctgttggtgagagccac 376
Query: 280 cagggccgcgacgaggccggcgttgcctgaccagcgtcggctcgttctgcccgaag-tgt 338
||||||||| |||||||||||||||||| || |||||||||||||||||||||||| |||
Sbjct: 375 cagggccgccacgaggccggcgttgcct-acaagcgtcggctcgttctgcccgaaggtgt 317
Query: 339 tgcgcgagtccttgaagccgtcgttcttgtcgggcccgccgaccatggnnnnnnnnagca 398
|||||||||||||||||||||||||| |||| |||||||||||||||| ||||
Sbjct: 316 tgcgcgagtccttgaagccgtcgttcctgtctggcccgccgaccatggcgcccgtcagca 257
Query: 399 ggttggggtccgctttcttgctgtcgcgccacttgtagccgccggtgcacgagtacttga 458
|||||||||| || |||||| ||| |||||||||||||||||||||||||| |||||||
Sbjct: 256 ggttggggtctgccttcttggagtctcgccacttgtagccgccggtgcacgaatacttga 197
Query: 459 cgccgttgtgcggcgtggacgcgccacggtggtgcacgtgccgtgggtacttgctgccga 518
|||||||||| ||||||||||||||||||||||||| |||||| |||||||| ||||||
Sbjct: 196 cgccgttgtgaggcgtggacgcgccacggtggtgcaggtgccgcgggtactttttgccga 137
Query: 519 acccaaccacgtagctcatcttcttggggttgtcaccgagaatgtagttgatctgagacc 578
| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 136 aaccaaccacgtagctcatcttcttggggttgtcaccaagaatgtagttgatctgagact 77
Query: 579 tggcgaactcacggaggtcgttggtggtcatgaagtttggaccgcagtaccagccgggga 638
| |||||||| |||||||||||||| |||||||||||||| ||||||||||| |||||||
Sbjct: 76 ttgcgaactcccggaggtcgttggttgtcatgaagtttggcccgcagtaccatccgggga 17
Query: 639 cgttgacggcctccat 654
||||||| ||||||||
Sbjct: 16 cgttgactgcctccat 1
Score = 44.1 bits (22), Expect = 0.026
Identities = 37/41 (90%), Gaps = 2/41 (4%)
Strand = Plus / Minus
Query: 78 gtggtattgtacagaagagaattcgcgcgcgtacgtgatcg 118
||||||||||||| |||| |||||||||||||| ||||||
Sbjct: 605 gtggtattgtacaaaaga--attcgcgcgcgtacatgatcg 567
>gb|CF071078.1|CF071078 FE1_15_D12.b1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
clone FE1_15_D12_A002 3', mRNA sequence
Length = 707
Score = 593 bits (299), Expect = e-167
Identities = 449/495 (90%), Gaps = 5/495 (1%)
Strand = Plus / Minus
Query: 161 ggcttccatgatgacggtggtggcggcgcggcggggaacattgtgcggcacggcggagaa 220
||||||||||| ||||| || ||||||||||| |||||||||| ||||||||||||||||
Sbjct: 493 ggcttccatgacgacggcggcggcggcgcggcagggaacattg-gcggcacggcggagaa 435
Query: 221 catggtgttcttgtcgacggcggttacggag-ctcccctgccgctgctggtgagagccac 279
|||||||||||||||||||||||| | | | |||||||||||||| |||||||||||||
Sbjct: 434 catggtgttcttgtcgacggcggtaatgccgactcccctgccgctgttggtgagagccac 375
Query: 280 cagggccgcgacgaggccggcgttgcctgaccagcgtcggctcgttctgcccgaag-tgt 338
||||||||| |||||||||||||||||| || |||||||||||||||||||||||| |||
Sbjct: 374 cagggccgccacgaggccggcgttgcct-acaagcgtcggctcgttctgcccgaaggtgt 316
Query: 339 tgcgcgagtccttgaagccgtcgttcttgtcgggcccgccgaccatggnnnnnnnnagca 398
|||||||||||||||||||||||||| |||| |||||||||||||||| ||||
Sbjct: 315 tgcgcgagtccttgaagccgtcgttcctgtctggcccgccgaccatggcgcccgtcagca 256
Query: 399 ggttggggtccgctttcttgctgtcgcgccacttgtagccgccggtgcacgagtacttga 458
|||||||||| || |||||| ||| |||||||||||||||||||||||||| |||||||
Sbjct: 255 ggttggggtctgccttcttggagtctcgccacttgtagccgccggtgcacgaatacttga 196
Query: 459 cgccgttgtgcggcgtggacgcgccacggtggtgcacgtgccgtgggtacttgctgccga 518
|||||||||| ||||||||||||||||||||||||| |||||| |||||||| ||||||
Sbjct: 195 cgccgttgtgaggcgtggacgcgccacggtggtgcaggtgccgcgggtactttttgccga 136
Query: 519 acccaaccacgtagctcatc-ttcttggggttgtcaccgagaatgtagttgatctgagac 577
| |||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct: 135 aaccaaccacgtagctcatctttcttggggttgtcaccaagaatgtagttgatctgagac 76
Query: 578 ctggcgaactcacggaggtcgttggtggtcatgaagtttggaccgcagtaccagccgggg 637
| |||||||| |||||||||||||| |||||||||||||| ||||||||||| ||||||
Sbjct: 75 tttgcgaactcccggaggtcgttggttgtcatgaagtttggcccgcagtaccatccgggg 16
Query: 638 acgttgacggcctcc 652
|||||||| ||||||
Sbjct: 15 acgttgactgcctcc 1
Score = 44.1 bits (22), Expect = 0.026
Identities = 37/41 (90%), Gaps = 2/41 (4%)
Strand = Plus / Minus
Query: 78 gtggtattgtacagaagagaattcgcgcgcgtacgtgatcg 118
||||||||||||| |||| |||||||||||||| ||||||
Sbjct: 604 gtggtattgtacaaaaga--attcgcgcgcgtacatgatcg 566
>gb|CX611325.1|CX611325 ANR1_24_B05.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_24_B05_A002 3', mRNA sequence
Length = 705
Score = 589 bits (297), Expect = e-166
Identities = 446/493 (90%), Gaps = 4/493 (0%)
Strand = Plus / Minus
Query: 161 ggcttccatgatgacggtggtggcggcgcggcggggaacattgtgcggcacggcggagaa 220
||||||||||| ||||| || ||||||||||| |||||||||| ||||||||||||| ||
Sbjct: 491 ggcttccatgacgacggcggcggcggcgcggcagggaacattg-gcggcacggcggaaaa 433
Query: 221 catggtgttcttgtcgacggcggttacggag-ctcccctgccgctgctggtgagagccac 279
|||||||||||||||||||||||| | | | |||||||||||||| |||||||||||||
Sbjct: 432 catggtgttcttgtcgacggcggtaatgccgactcccctgccgctgttggtgagagccac 373
Query: 280 cagggccgcgacgaggccggcgttgcctgaccagcgtcggctcgttctgcccgaag-tgt 338
||||||||| |||||||||||||||||| || |||||||||||||||||||||||| |||
Sbjct: 372 cagggccgccacgaggccggcgttgcct-acaagcgtcggctcgttctgcccgaaggtgt 314
Query: 339 tgcgcgagtccttgaagccgtcgttcttgtcgggcccgccgaccatggnnnnnnnnagca 398
|||||||||||||||||||||||||| |||| |||||||||||||||| ||||
Sbjct: 313 tgcgcgagtccttgaagccgtcgttcctgtctggcccgccgaccatggcgcccgtcagca 254
Query: 399 ggttggggtccgctttcttgctgtcgcgccacttgtagccgccggtgcacgagtacttga 458
|||||||||| || ||||| ||| |||||||||||||||||||||||||| |||||||
Sbjct: 253 ggttggggtctgccctcttggagtctcgccacttgtagccgccggtgcacgaatacttga 194
Query: 459 cgccgttgtgcggcgtggacgcgccacggtggtgcacgtgccgtgggtacttgctgccga 518
|||||||||| ||||||||||||||||||||||||| |||||| |||||||| ||||||
Sbjct: 193 cgccgttgtgaggcgtggacgcgccacggtggtgcaggtgccgcgggtactttttgccga 134
Query: 519 acccaaccacgtagctcatcttcttggggttgtcaccgagaatgtagttgatctgagacc 578
| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 133 aaccaaccacgtagctcatcttcttggggttgtcaccaagaatgtagttgatctgagact 74
Query: 579 tggcgaactcacggaggtcgttggtggtcatgaagtttggaccgcagtaccagccgggga 638
| |||||||| |||||||||||||| |||||||||||||| ||||||||||| |||||||
Sbjct: 73 ttgcgaactcccggaggtcgttggttgtcatgaagtttggcccgcagtaccatccgggga 14
Query: 639 cgttgacggcctc 651
||||||| |||||
Sbjct: 13 cgttgactgcctc 1
Score = 44.1 bits (22), Expect = 0.026
Identities = 37/41 (90%), Gaps = 2/41 (4%)
Strand = Plus / Minus
Query: 78 gtggtattgtacagaagagaattcgcgcgcgtacgtgatcg 118
||||||||||||| |||| |||||||||||||| ||||||
Sbjct: 602 gtggtattgtacaaaaga--attcgcgcgcgtacatgatcg 564
>gb|CX613114.1|CX613114 GABR1_6_G11.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_6_G11_A002 3', mRNA sequence
Length = 683
Score = 585 bits (295), Expect = e-165
Identities = 441/487 (90%), Gaps = 4/487 (0%)
Strand = Plus / Minus
Query: 161 ggcttccatgatgacggtggtggcggcgcggcggggaacattgtgcggcacggcggagaa 220
||||||||||| ||||| || ||||||||||| |||||||||| ||||||||||||| ||
Sbjct: 489 ggcttccatgacgacggcggcggcggcgcggcagggaacattg-gcggcacggcggaaaa 431
Query: 221 catggtgttcttgtcgacggcggttacggag-ctcccctgccgctgctggtgagagccac 279
|||||||||||||||||||||||| | | | |||||||||||||| |||||||||||||
Sbjct: 430 catggtgttcttgtcgacggcggtaatgccgactcccctgccgctgttggtgagagccac 371
Query: 280 cagggccgcgacgaggccggcgttgcctgaccagcgtcggctcgttctgcccgaag-tgt 338
||||||||| |||||||||||||||||| || |||||||||||||||||||||||| |||
Sbjct: 370 cagggccgccacgaggccggcgttgcct-acaagcgtcggctcgttctgcccgaaggtgt 312
Query: 339 tgcgcgagtccttgaagccgtcgttcttgtcgggcccgccgaccatggnnnnnnnnagca 398
|||||||||||||||||||||||||| |||| |||||||||||||||| ||||
Sbjct: 311 tgcgcgagtccttgaagccgtcgttcctgtctggcccgccgaccatggcgcccgtcagca 252
Query: 399 ggttggggtccgctttcttgctgtcgcgccacttgtagccgccggtgcacgagtacttga 458
|||||||||| || |||||| ||| |||||||||||||||||||||||||| |||||||
Sbjct: 251 ggttggggtctgccttcttggagtctcgccacttgtagccgccggtgcacgaatacttga 192
Query: 459 cgccgttgtgcggcgtggacgcgccacggtggtgcacgtgccgtgggtacttgctgccga 518
|||||||||| ||||||||||||||||||||||||| |||||| |||||||| ||||||
Sbjct: 191 cgccgttgtgaggcgtggacgcgccacggtggtgcaggtgccgcgggtactttttgccga 132
Query: 519 acccaaccacgtagctcatcttcttggggttgtcaccgagaatgtagttgatctgagacc 578
| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct: 131 aaccaaccacgtagctcatcttcttggggttgtcaccaagaatgtagttgatctgaaact 72
Query: 579 tggcgaactcacggaggtcgttggtggtcatgaagtttggaccgcagtaccagccgggga 638
| |||||||| |||||||||||||| |||||||||||||| ||||||||||| |||||||
Sbjct: 71 ttgcgaactcccggaggtcgttggttgtcatgaagtttggcccgcagtaccatccgggga 12
Query: 639 cgttgac 645
|||||||
Sbjct: 11 cgttgac 5
Score = 44.1 bits (22), Expect = 0.026
Identities = 37/41 (90%), Gaps = 2/41 (4%)
Strand = Plus / Minus
Query: 78 gtggtattgtacagaagagaattcgcgcgcgtacgtgatcg 118
||||||||||||| |||| |||||||||||||| ||||||
Sbjct: 600 gtggtattgtacaaaaga--attcgcgcgcgtacatgatcg 562
>gb|BE357367.1|BE357367 DG1_148_A07.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 659
Score = 579 bits (292), Expect = e-163
Identities = 429/472 (90%), Gaps = 4/472 (0%)
Strand = Plus / Minus
Query: 161 ggcttccatgatgacggtggtggcggcgcggcggggaacattgtgcggcacggcggagaa 220
||||||||||| ||||| || ||||||||||| |||||||||| ||||||||||||||||
Sbjct: 470 ggcttccatgacgacggcggcggcggcgcggcagggaacattg-gcggcacggcggagaa 412
Query: 221 catggtgttcttgtcgacggcggttacggag-ctcccctgccgctgctggtgagagccac 279
|||||||||||||||||||||||| | | | |||||||||||||| |||||||||||||
Sbjct: 411 catggtgttcttgtcgacggcggtaatgccgactcccctgccgctgttggtgagagccac 352
Query: 280 cagggccgcgacgaggccggcgttgcctgaccagcgtcggctcgttctgcccgaag-tgt 338
||||||||| |||||||||||||||||| || |||||||||||||||||||||||| |||
Sbjct: 351 cagggccgccacgaggccggcgttgcct-acaagcgtcggctcgttctgcccgaaggtgt 293
Query: 339 tgcgcgagtccttgaagccgtcgttcttgtcgggcccgccgaccatggnnnnnnnnagca 398
|||||||||||||||||||||||||| |||| |||||||||||||||| ||||
Sbjct: 292 tgcgcgagtccttgaagccgtcgttcctgtctggcccgccgaccatggcgcccgtcagca 233
Query: 399 ggttggggtccgctttcttgctgtcgcgccacttgtagccgccggtgcacgagtacttga 458
|||||||||| || |||||| ||| |||||||||||||||||||||||||| |||||||
Sbjct: 232 ggttggggtctgccttcttggagtctcgccacttgtagccgccggtgcacgaatacttga 173
Query: 459 cgccgttgtgcggcgtggacgcgccacggtggtgcacgtgccgtgggtacttgctgccga 518
|||||||||| ||||||||||||||||||||||||| |||||| |||||||| ||||||
Sbjct: 172 cgccgttgtgaggcgtggacgcgccacggtggtgcaggtgccgcgggtactttttgccga 113
Query: 519 acccaaccacgtagctcatcttcttggggttgtcaccgagaatgtagttgatctgagacc 578
| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 112 aaccaaccacgtagctcatcttcttggggttgtcaccaagaatgtagttgatctgagact 53
Query: 579 tggcgaactcacggaggtcgttggtggtcatgaagtttggaccgcagtacca 630
| |||||||| |||||||||||||| |||||||||||||| |||||||||||
Sbjct: 52 ttgcgaactcccggaggtcgttggttgtcatgaagtttggcccgcagtacca 1
Score = 44.1 bits (22), Expect = 0.026
Identities = 37/41 (90%), Gaps = 2/41 (4%)
Strand = Plus / Minus
Query: 78 gtggtattgtacagaagagaattcgcgcgcgtacgtgatcg 118
||||||||||||| |||| |||||||||||||| ||||||
Sbjct: 581 gtggtattgtacaaaaga--attcgcgcgcgtacatgatcg 543
>gb|CD220430.1|CD220430 CCC1_67_H06.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_67_H06_A007 3', mRNA sequence
Length = 635
Score = 511 bits (258), Expect = e-143
Identities = 389/430 (90%), Gaps = 4/430 (0%)
Strand = Plus / Minus
Query: 161 ggcttccatgatgacggtggtggcggcgcggcggggaacattgtgcggcacggcggagaa 220
||||||||||| ||||| || ||||||||||| |||||||||| ||||||||||||||||
Sbjct: 430 ggcttccatgacgacggcggcggcggcgcggcagggaacattg-gcggcacggcggagaa 372
Query: 221 catggtgttcttgtcgacggcggttacggag-ctcccctgccgctgctggtgagagccac 279
|||||||||||||||||||||||| | | | |||||||||||||| |||||||||||||
Sbjct: 371 catggtgttcttgtcgacggcggtaatgccgactcccctgccgctgttggtgagagccac 312
Query: 280 cagggccgcgacgaggccggcgttgcctgaccagcgtcggctcgttctgcccgaag-tgt 338
||||||||| |||||||||||||||||| || |||||||||||||||||||||||| | |
Sbjct: 311 cagggccgccacgaggccggcgttgcct-acaagcgtcggctcgttctgcccgaaggttt 253
Query: 339 tgcgcgagtccttgaagccgtcgttcttgtcgggcccgccgaccatggnnnnnnnnagca 398
|||||||||||||||||||||||||| |||| |||||||||||||||| ||||
Sbjct: 252 tgcgcgagtccttgaagccgtcgttcctgtctggcccgccgaccatggcgcccgtcagca 193
Query: 399 ggttggggtccgctttcttgctgtcgcgccacttgtagccgccggtgcacgagtacttga 458
|||||||||| || |||||| ||| |||||||||||||||||||||||||| |||||||
Sbjct: 192 ggttggggtctgccttcttggagtctcgccacttgtagccgccggtgcacgaatacttga 133
Query: 459 cgccgttgtgcggcgtggacgcgccacggtggtgcacgtgccgtgggtacttgctgccga 518
|||||||||| ||||||||||||||||||||||||| |||||| |||||||| ||||||
Sbjct: 132 cgccgttgtgaggcgtggacgcgccacggtggtgcaggtgccgcgggtactttttgccga 73
Query: 519 acccaaccacgtagctcatcttcttggggttgtcaccgagaatgtagttgatctgagacc 578
| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 72 aaccaaccacgtagctcatcttcttggggttgtcaccaagaatgtagttgatctgagact 13
Query: 579 tggcgaactc 588
| ||||||||
Sbjct: 12 ttgcgaactc 3
Score = 46.1 bits (23), Expect = 0.007
Identities = 38/42 (90%), Gaps = 2/42 (4%)
Strand = Plus / Minus
Query: 78 gtggtattgtacagaagagaattcgcgcgcgtacgtgatcga 119
||||||||||||| |||| |||||||||||||| |||||||
Sbjct: 541 gtggtattgtacaaaaga--attcgcgcgcgtacatgatcga 502
>gb|CW022238.1|CW022238 104_161_10431724_1_30006 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10431724, DNA
sequence
Length = 702
Score = 505 bits (255), Expect = e-141
Identities = 377/415 (90%), Gaps = 4/415 (0%)
Strand = Plus / Minus
Query: 161 ggcttccatgatgacggtggtggcggcgcggcggggaacattgtgcggcacggcggagaa 220
||||||||||| ||||| || ||||||||||| |||||||||| ||||||||||||||||
Sbjct: 441 ggcttccatgacgacggcggcggcggcgcggcagggaacattg-gcggcacggcggagaa 383
Query: 221 catggtgttcttgtcgacggcggttacggag-ctcccctgccgctgctggtgagagccac 279
|||||||||||||||||||||||| | | | |||||||||||||| |||||||||||||
Sbjct: 382 catggtgttcttgtcgacggcggtaatgccgactcccctgccgctgttggtgagagccac 323
Query: 280 cagggccgcgacgaggccggcgttgcctgaccagcgtcggctcgttctgcccgaag-tgt 338
||||||||| |||||||||||||||||| || |||||||||||||||||||||||| |||
Sbjct: 322 cagggccgccacgaggccggcgttgcct-acaagcgtcggctcgttctgcccgaaggtgt 264
Query: 339 tgcgcgagtccttgaagccgtcgttcttgtcgggcccgccgaccatggnnnnnnnnagca 398
|||||||||||||||||||||||||| |||| |||||||||||||||| ||||
Sbjct: 263 tgcgcgagtccttgaagccgtcgttcctgtctggcccgccgaccatggcgcccgtcagca 204
Query: 399 ggttggggtccgctttcttgctgtcgcgccacttgtagccgccggtgcacgagtacttga 458
|||||||||| || |||||| ||| |||||||||||||||||||||||||| |||||||
Sbjct: 203 ggttggggtctgccttcttggagtctcgccacttgtagccgccggtgcacgaatacttga 144
Query: 459 cgccgttgtgcggcgtggacgcgccacggtggtgcacgtgccgtgggtacttgctgccga 518
|||||||||| ||||||||||||||||||||||||| |||||| |||||||| ||||||
Sbjct: 143 cgccgttgtgaggcgtggacgcgccacggtggtgcaggtgccgcgggtactttttgccga 84
Query: 519 acccaaccacgtagctcatcttcttggggttgtcaccgagaatgtagttgatctg 573
| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 83 aaccaaccacgtagctcatcttcttggggttgtcaccaagaatgtagttgatctg 29
Score = 44.1 bits (22), Expect = 0.026
Identities = 37/41 (90%), Gaps = 2/41 (4%)
Strand = Plus / Minus
Query: 78 gtggtattgtacagaagagaattcgcgcgcgtacgtgatcg 118
||||||||||||| |||| |||||||||||||| ||||||
Sbjct: 552 gtggtattgtacaaaaga--attcgcgcgcgtacatgatcg 514
>gb|CW164356.1|CW164356 104_572_11151945_148_36462_041 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11151945, DNA
sequence
Length = 735
Score = 505 bits (255), Expect = e-141
Identities = 377/415 (90%), Gaps = 4/415 (0%)
Strand = Plus / Plus
Query: 161 ggcttccatgatgacggtggtggcggcgcggcggggaacattgtgcggcacggcggagaa 220
||||||||||| ||||| || ||||||||||| |||||||||| ||||||||||||||||
Sbjct: 194 ggcttccatgacgacggcggcggcggcgcggcagggaacattg-gcggcacggcggagaa 252
Query: 221 catggtgttcttgtcgacggcggttacggag-ctcccctgccgctgctggtgagagccac 279
|||||||||||||||||||||||| | | | |||||||||||||| |||||||||||||
Sbjct: 253 catggtgttcttgtcgacggcggtaatgccgactcccctgccgctgttggtgagagccac 312
Query: 280 cagggccgcgacgaggccggcgttgcctgaccagcgtcggctcgttctgcccgaag-tgt 338
||||||||| |||||||||||||||||| || |||||||||||||||||||||||| |||
Sbjct: 313 cagggccgccacgaggccggcgttgcct-acaagcgtcggctcgttctgcccgaaggtgt 371
Query: 339 tgcgcgagtccttgaagccgtcgttcttgtcgggcccgccgaccatggnnnnnnnnagca 398
|||||||||||||||||||||||||| |||| |||||||||||||||| ||||
Sbjct: 372 tgcgcgagtccttgaagccgtcgttcctgtctggcccgccgaccatggcgcccgtcagca 431
Query: 399 ggttggggtccgctttcttgctgtcgcgccacttgtagccgccggtgcacgagtacttga 458
|||||||||| || |||||| ||| |||||||||||||||||||||||||| |||||||
Sbjct: 432 ggttggggtctgccttcttggagtctcgccacttgtagccgccggtgcacgaatacttga 491
Query: 459 cgccgttgtgcggcgtggacgcgccacggtggtgcacgtgccgtgggtacttgctgccga 518
|||||||||| ||||||||||||||||||||||||| |||||| |||||||| ||||||
Sbjct: 492 cgccgttgtgaggcgtggacgcgccacggtggtgcaggtgccgcgggtactttttgccga 551
Query: 519 acccaaccacgtagctcatcttcttggggttgtcaccgagaatgtagttgatctg 573
| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 552 aaccaaccacgtagctcatcttcttggggttgtcaccaagaatgtagttgatctg 606
Score = 44.1 bits (22), Expect = 0.026
Identities = 37/41 (90%), Gaps = 2/41 (4%)
Strand = Plus / Plus
Query: 78 gtggtattgtacagaagagaattcgcgcgcgtacgtgatcg 118
||||||||||||| |||| |||||||||||||| ||||||
Sbjct: 83 gtggtattgtacaaaaga--attcgcgcgcgtacatgatcg 121
>gb|CW236952.1|CW236952 104_693_11215895_148_37519_094 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11215895, DNA
sequence
Length = 667
Score = 505 bits (255), Expect = e-141
Identities = 377/415 (90%), Gaps = 4/415 (0%)
Strand = Plus / Minus
Query: 161 ggcttccatgatgacggtggtggcggcgcggcggggaacattgtgcggcacggcggagaa 220
||||||||||| ||||| || ||||||||||| |||||||||| ||||||||||||||||
Sbjct: 438 ggcttccatgacgacggcggcggcggcgcggcagggaacattg-gcggcacggcggagaa 380
Query: 221 catggtgttcttgtcgacggcggttacggag-ctcccctgccgctgctggtgagagccac 279
|||||||||||||||||||||||| | | | |||||||||||||| |||||||||||||
Sbjct: 379 catggtgttcttgtcgacggcggtaatgccgactcccctgccgctgttggtgagagccac 320
Query: 280 cagggccgcgacgaggccggcgttgcctgaccagcgtcggctcgttctgcccgaag-tgt 338
||||||||| |||||||||||||||||| || |||||||||||||||||||||||| |||
Sbjct: 319 cagggccgccacgaggccggcgttgcct-acaagcgtcggctcgttctgcccgaaggtgt 261
Query: 339 tgcgcgagtccttgaagccgtcgttcttgtcgggcccgccgaccatggnnnnnnnnagca 398
|||||||||||||||||||||||||| |||| |||||||||||||||| ||||
Sbjct: 260 tgcgcgagtccttgaagccgtcgttcctgtctggcccgccgaccatggcgcccgtcagca 201
Query: 399 ggttggggtccgctttcttgctgtcgcgccacttgtagccgccggtgcacgagtacttga 458
|||||||||| || |||||| ||| |||||||||||||||||||||||||| |||||||
Sbjct: 200 ggttggggtctgccttcttggagtctcgccacttgtagccgccggtgcacgaatacttga 141
Query: 459 cgccgttgtgcggcgtggacgcgccacggtggtgcacgtgccgtgggtacttgctgccga 518
|||||||||| ||||||||||||||||||||||||| |||||| |||||||| ||||||
Sbjct: 140 cgccgttgtgaggcgtggacgcgccacggtggtgcaggtgccgcgggtactttttgccga 81
Query: 519 acccaaccacgtagctcatcttcttggggttgtcaccgagaatgtagttgatctg 573
| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 80 aaccaaccacgtagctcatcttcttggggttgtcaccaagaatgtagttgatctg 26
Score = 44.1 bits (22), Expect = 0.026
Identities = 37/41 (90%), Gaps = 2/41 (4%)
Strand = Plus / Minus
Query: 78 gtggtattgtacagaagagaattcgcgcgcgtacgtgatcg 118
||||||||||||| |||| |||||||||||||| ||||||
Sbjct: 549 gtggtattgtacaaaaga--attcgcgcgcgtacatgatcg 511
>gb|CW388822.1|CW388822 fsbb001f073l23f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f073l23, DNA
sequence
Length = 581
Score = 505 bits (255), Expect = e-141
Identities = 377/415 (90%), Gaps = 4/415 (0%)
Strand = Plus / Minus
Query: 161 ggcttccatgatgacggtggtggcggcgcggcggggaacattgtgcggcacggcggagaa 220
||||||||||| ||||| || ||||||||||| |||||||||| ||||||||||||||||
Sbjct: 473 ggcttccatgacgacggcggcggcggcgcggcagggaacattg-gcggcacggcggagaa 415
Query: 221 catggtgttcttgtcgacggcggttacggag-ctcccctgccgctgctggtgagagccac 279
|||||||||||||||||||||||| | | | |||||||||||||| |||||||||||||
Sbjct: 414 catggtgttcttgtcgacggcggtaatgccgactcccctgccgctgttggtgagagccac 355
Query: 280 cagggccgcgacgaggccggcgttgcctgaccagcgtcggctcgttctgcccgaag-tgt 338
||||||||| |||||||||||||||||| || |||||||||||||||||||||||| |||
Sbjct: 354 cagggccgccacgaggccggcgttgcct-acaagcgtcggctcgttctgcccgaaggtgt 296
Query: 339 tgcgcgagtccttgaagccgtcgttcttgtcgggcccgccgaccatggnnnnnnnnagca 398
|||||||||||||||||||||||||| |||| |||||||||||||||| ||||
Sbjct: 295 tgcgcgagtccttgaagccgtcgttcctgtctggcccgccgaccatggcgcccgtcagca 236
Query: 399 ggttggggtccgctttcttgctgtcgcgccacttgtagccgccggtgcacgagtacttga 458
|||||||||| || |||||| ||| |||||||||||||||||||||||||| |||||||
Sbjct: 235 ggttggggtctgccttcttggagtctcgccacttgtagccgccggtgcacgaatacttga 176
Query: 459 cgccgttgtgcggcgtggacgcgccacggtggtgcacgtgccgtgggtacttgctgccga 518
|||||||||| ||||||||||||||||||||||||| |||||| |||||||| ||||||
Sbjct: 175 cgccgttgtgaggcgtggacgcgccacggtggtgcaggtgccgcgggtactttttgccga 116
Query: 519 acccaaccacgtagctcatcttcttggggttgtcaccgagaatgtagttgatctg 573
| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 115 aaccaaccacgtagctcatcttcttggggttgtcaccaagaatgtagttgatctg 61
Score = 40.1 bits (20), Expect = 0.40
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 95 agaattcgcgcgcgtacgtgatcg 118
||||||||||||||||| ||||||
Sbjct: 569 agaattcgcgcgcgtacatgatcg 546
>gb|CW164355.1|CW164355 104_572_11151945_116_36461_041 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11151945, DNA
sequence
Length = 766
Score = 500 bits (252), Expect = e-139
Identities = 355/394 (90%), Gaps = 1/394 (0%)
Strand = Plus / Minus
Query: 571 ctgagacctggcgaactcacggaggtcgttggtggtcatgaagtttggaccgcagtacca 630
||||||| | |||||||| |||||||||||||| |||||||||||||| |||||||||||
Sbjct: 621 ctgagactttgcgaactcccggaggtcgttggttgtcatgaagtttggcccgcagtacca 562
Query: 631 gccggggacgttgacggcctccatgtagtcggcgtagagcgcagcgagaaaggagttggc 690
|||||||||||||| |||||||||||||||||||||||||| |||| |||||||||||
Sbjct: 561 tccggggacgttgactgcctccatgtagtcggcgtagagcgcggcgatgaaggagttggc 502
Query: 691 gacgacgtactgcagcggctgccccctgccgtggttgaagagcgccatcccgcccttngg 750
||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||
Sbjct: 501 gacgacgtactgcagcggctgccccttgccgtggttgaagagcgccatccctccctt-gg 443
Query: 751 tgaagttgaaggcggcgaagcccggaaagtacatgcacatgttgaggctggtggcgttgt 810
|||||||||||| | |||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct: 442 tgaagttgaaggagccgaagcgcgggaagtacatgcacatgttgaggctggtggcgttgt 383
Query: 811 ggtagccggcgagcgannnntcgtacgggtagccggggttgaggaacatgcgcagccgcg 870
|||||||| |||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct: 382 ggtagccgatgagcgactcctcgtacgggtagcccgggttgaggaacatgcgcagccgcg 323
Query: 871 ncagcagcagctgggcgcccgggagctnnnnntcccagctgaacacnnagaagtcgagga 930
|||||||||||| ||||||||||||| |||||||||||||| ||||||||||||
Sbjct: 322 acagcagcagctgcgcgcccgggagcttgttgtcccagctgaacaccgagaagtcgagga 263
Query: 931 tgttgangnnnnccttggcgtncttgggcagccg 964
|||||| | ||||||||| ||||||||||||
Sbjct: 262 tgttgaagaaggccttggcgttcttgggcagccg 229
>gb|CW230233.1|CW230233 104_671_11207740_116_37270_002 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11207740, DNA
sequence
Length = 712
Score = 500 bits (252), Expect = e-139
Identities = 355/394 (90%), Gaps = 1/394 (0%)
Strand = Plus / Plus
Query: 571 ctgagacctggcgaactcacggaggtcgttggtggtcatgaagtttggaccgcagtacca 630
||||||| | |||||||| |||||||||||||| |||||||||||||| |||||||||||
Sbjct: 105 ctgagactttgcgaactcccggaggtcgttggttgtcatgaagtttggcccgcagtacca 164
Query: 631 gccggggacgttgacggcctccatgtagtcggcgtagagcgcagcgagaaaggagttggc 690
|||||||||||||| |||||||||||||||||||||||||| |||| |||||||||||
Sbjct: 165 tccggggacgttgactgcctccatgtagtcggcgtagagcgcggcgatgaaggagttggc 224
Query: 691 gacgacgtactgcagcggctgccccctgccgtggttgaagagcgccatcccgcccttngg 750
||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||
Sbjct: 225 gacgacgtactgcagcggctgccccttgccgtggttgaagagcgccatccctccctt-gg 283
Query: 751 tgaagttgaaggcggcgaagcccggaaagtacatgcacatgttgaggctggtggcgttgt 810
|||||||||||| | |||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct: 284 tgaagttgaaggagccgaagcgcgggaagtacatgcacatgttgaggctggtggcgttgt 343
Query: 811 ggtagccggcgagcgannnntcgtacgggtagccggggttgaggaacatgcgcagccgcg 870
|||||||| |||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct: 344 ggtagccgatgagcgactcctcgtacgggtagcccgggttgaggaacatgcgcagccgcg 403
Query: 871 ncagcagcagctgggcgcccgggagctnnnnntcccagctgaacacnnagaagtcgagga 930
|||||||||||| ||||||||||||| |||||||||||||| ||||||||||||
Sbjct: 404 acagcagcagctgcgcgcccgggagcttgttgtcccagctgaacaccgagaagtcgagga 463
Query: 931 tgttgangnnnnccttggcgtncttgggcagccg 964
|||||| | ||||||||| ||||||||||||
Sbjct: 464 tgttgaagaaggccttggcgttcttgggcagccg 497
>gb|CX616301.1|CX616301 GABR1_27_D03.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_27_D03_A002 3', mRNA sequence
Length = 605
Score = 462 bits (233), Expect = e-128
Identities = 355/393 (90%), Gaps = 4/393 (1%)
Strand = Plus / Minus
Query: 161 ggcttccatgatgacggtggtggcggcgcggcggggaacattgtgcggcacggcggagaa 220
||||||||||| ||||| || ||||||||||| |||||||||| ||||||||||||||||
Sbjct: 391 ggcttccatgacgacggcggcggcggcgcggcagggaacattg-gcggcacggcggagaa 333
Query: 221 catggtgttcttgtcgacggcggttacggag-ctcccctgccgctgctggtgagagccac 279
|||||||||||||||||||||||| | | | |||||||||||||| |||||||||||||
Sbjct: 332 catggtgttcttgtcgacggcggtaatgccgactcccctgccgctgttggtgagagccac 273
Query: 280 cagggccgcgacgaggccggcgttgcctgaccagcgtcggctcgttctgcccgaag-tgt 338
||||||||| |||||||||||||||||| || |||||||||||||||||||||||| |||
Sbjct: 272 cagggccgccacgaggccggcgttgcct-acaagcgtcggctcgttctgcccgaaggtgt 214
Query: 339 tgcgcgagtccttgaagccgtcgttcttgtcgggcccgccgaccatggnnnnnnnnagca 398
|||||||||||||||||||||||||| |||| |||||||||||||||| ||||
Sbjct: 213 tgcgcgagtccttgaagccgtcgttcctgtctggcccgccgaccatggcgcccgtcagca 154
Query: 399 ggttggggtccgctttcttgctgtcgcgccacttgtagccgccggtgcacgagtacttga 458
|||||||||| || |||||| ||| |||||||||||||||||||||||||| |||||||
Sbjct: 153 ggttggggtctgccttcttggagtctcgccacttgtagccgccggtgcacgaatacttga 94
Query: 459 cgccgttgtgcggcgtggacgcgccacggtggtgcacgtgccgtgggtacttgctgccga 518
|||||||||| ||||||||||| ||||||||||||| |||||| |||||||| ||||||
Sbjct: 93 cgccgttgtgaggcgtggacgccccacggtggtgcaggtgccgcgggtactttttgccga 34
Query: 519 acccaaccacgtagctcatcttcttggggttgt 551
| |||||||||||||||||||||||||||||||
Sbjct: 33 aaccaaccacgtagctcatcttcttggggttgt 1
Score = 44.1 bits (22), Expect = 0.026
Identities = 37/41 (90%), Gaps = 2/41 (4%)
Strand = Plus / Minus
Query: 78 gtggtattgtacagaagagaattcgcgcgcgtacgtgatcg 118
||||||||||||| |||| |||||||||||||| ||||||
Sbjct: 502 gtggtattgtacaaaaga--attcgcgcgcgtacatgatcg 464
>gb|CD205740.1|CD205740 HS1_18_E08.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_18_E08_A012 3', mRNA sequence
Length = 601
Score = 460 bits (232), Expect = e-127
Identities = 351/388 (90%), Gaps = 4/388 (1%)
Strand = Plus / Minus
Query: 161 ggcttccatgatgacggtggtggcggcgcggcggggaacattgtgcggcacggcggagaa 220
||||||||||| ||||| || ||||||||||| |||||||||| ||||||||||||||||
Sbjct: 386 ggcttccatgacgacggcggcggcggcgcggcagggaacattg-gcggcacggcggagaa 328
Query: 221 catggtgttcttgtcgacggcggttacggag-ctcccctgccgctgctggtgagagccac 279
|||||||||||||||||||||||| | | | |||||||||||||| |||||||||||||
Sbjct: 327 catggtgttcttgtcgacggcggtaatgccgactcccctgccgctgttggtgagagccac 268
Query: 280 cagggccgcgacgaggccggcgttgcctgaccagcgtcggctcgttctgcccgaag-tgt 338
||||||||| |||||||||||||||||| || |||||||||||||||||||||||| |||
Sbjct: 267 cagggccgccacgaggccggcgttgcct-acaagcgtcggctcgttctgcccgaaggtgt 209
Query: 339 tgcgcgagtccttgaagccgtcgttcttgtcgggcccgccgaccatggnnnnnnnnagca 398
|||||||||||||||||||||||||| |||| |||||||||||||||| ||||
Sbjct: 208 tgcgcgagtccttgaagccgtcgttcctgtctggcccgccgaccatggcgcccgtcagca 149
Query: 399 ggttggggtccgctttcttgctgtcgcgccacttgtagccgccggtgcacgagtacttga 458
|||||||||| || |||||| ||| |||||||||||||||||||||||||| |||||||
Sbjct: 148 ggttggggtctgccttcttggagtctcgccacttgtagccgccggtgcacgaatacttga 89
Query: 459 cgccgttgtgcggcgtggacgcgccacggtggtgcacgtgccgtgggtacttgctgccga 518
|||||||||| ||||||||||||||||||||||||| |||||| |||||||| ||||||
Sbjct: 88 cgccgttgtgaggcgtggacgcgccacggtggtgcaggtgccgcgggtactttttgccga 29
Query: 519 acccaaccacgtagctcatcttcttggg 546
| ||||||||||||||||||||||||||
Sbjct: 28 aaccaaccacgtagctcatcttcttggg 1
Score = 44.1 bits (22), Expect = 0.026
Identities = 37/41 (90%), Gaps = 2/41 (4%)
Strand = Plus / Minus
Query: 78 gtggtattgtacagaagagaattcgcgcgcgtacgtgatcg 118
||||||||||||| |||| |||||||||||||| ||||||
Sbjct: 497 gtggtattgtacaaaaga--attcgcgcgcgtacatgatcg 459
>gb|CW459444.1|CW459444 fsbb001f206d04f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f206d04, DNA
sequence
Length = 516
Score = 363 bits (183), Expect = 2e-098
Identities = 256/285 (89%), Gaps = 1/285 (0%)
Strand = Plus / Plus
Query: 680 aaggagttggcgacgacgtactgcagcggctgccccctgccgtggttgaagagcgccatc 739
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 11 aaggagttggcgacgacgtactgcagcggctgccccttgccgtggttgaagagcgccatc 70
Query: 740 ccgcccttnggtgaagttgaaggcggcgaagcccggaaagtacatgcacatgttgaggct 799
|| ||||| |||||||||||||| | |||||| ||| |||||||||||||||||||||||
Sbjct: 71 cctccctt-ggtgaagttgaaggagccgaagcgcgggaagtacatgcacatgttgaggct 129
Query: 800 ggtggcgttgtggtagccggcgagcgannnntcgtacgggtagccggggttgaggaacat 859
||||||||||||||||||| |||||| |||||||||||||| ||||||||||||||
Sbjct: 130 ggtggcgttgtggtagccgatgagcgactcctcgtacgggtagcccgggttgaggaacat 189
Query: 860 gcgcagccgcgncagcagcagctgggcgcccgggagctnnnnntcccagctgaacacnna 919
||||||||||| |||||||||||| ||||||||||||| |||||||||||||| |
Sbjct: 190 gcgcagccgcgacagcagcagctgcgcgcccgggagcttgttgtcccagctgaacaccga 249
Query: 920 gaagtcgaggatgttgangnnnnccttggcgtncttgggcagccg 964
||||||||||||||||| | ||||||||| ||||||||||||
Sbjct: 250 gaagtcgaggatgttgaagaaggccttggcgttcttgggcagccg 294
>gb|CW022239.1|CW022239 104_161_10431724_5_30007 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10431724, DNA
sequence
Length = 539
Score = 285 bits (144), Expect = 4e-075
Identities = 211/228 (92%), Gaps = 4/228 (1%)
Strand = Plus / Plus
Query: 161 ggcttccatgatgacggtggtggcggcgcggcggggaacattgtgcggcacggcggagaa 220
||||||||||| ||||| || ||||||||||| |||||||||| ||||||||||||||||
Sbjct: 281 ggcttccatgacgacggcggcggcggcgcggcagggaacattg-gcggcacggcggagaa 339
Query: 221 catggtgttcttgtcgacggcggttacggag-ctcccctgccgctgctggtgagagccac 279
|||||||||||||||||||||||| | | | |||||||||||||| |||||||||||||
Sbjct: 340 catggtgttcttgtcgacggcggtaatgccgactcccctgccgctgttggtgagagccac 399
Query: 280 cagggccgcgacgaggccggcgttgcctgaccagcgtcggctcgttctgcccgaa-gtgt 338
||||||||| |||||||||||||||||| || ||||||||||||||||||||||| ||||
Sbjct: 400 cagggccgccacgaggccggcgttgcct-acaagcgtcggctcgttctgcccgaaggtgt 458
Query: 339 tgcgcgagtccttgaagccgtcgttcttgtcgggcccgccgaccatgg 386
|||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct: 459 tgcgcgagtccttgaagccgtcgttcctgtctggcccgccgaccatgg 506
Score = 44.1 bits (22), Expect = 0.026
Identities = 37/41 (90%), Gaps = 2/41 (4%)
Strand = Plus / Plus
Query: 78 gtggtattgtacagaagagaattcgcgcgcgtacgtgatcg 118
||||||||||||| |||| |||||||||||||| ||||||
Sbjct: 170 gtggtattgtacaaaaga--attcgcgcgcgtacatgatcg 208
>gb|BZ338704.1|BZ338704 ia97c08.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone ia97c08 5', DNA sequence
Length = 661
Score = 270 bits (136), Expect = 2e-070
Identities = 292/346 (84%), Gaps = 1/346 (0%)
Strand = Plus / Plus
Query: 571 ctgagacctggcgaactcacggaggtcgttggtggtcatgaagtttggaccgcagtacca 630
||||||| |||||||| |||||||||| | ||||| ||||||||| || || ||||||||
Sbjct: 141 ctgagacttggcgaacgcacggaggtcttgggtgggcatgaagttggggccacagtacca 200
Query: 631 gccggggacgttgacggcctccatgtagtcggcgtagagcgcagcgagaaaggagttggc 690
||||||||||||| |||||||||||||||||| |||| || ||||| |||||||||||
Sbjct: 201 cccggggacgttgatcgcctccatgtagtcggcgaagagggcggcgaggaaggagttggc 260
Query: 691 gacgacgtactgcagcggctgccccctgccgtggttgaagagcgccatcccgcccttngg 750
||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||
Sbjct: 261 gaccacgtactgcagcggctgccccctgccgtggttgaagagcgccagcccgcccct-gg 319
Query: 751 tgaagttgaaggcggcgaagcccggaaagtacatgcacatgttgaggctggtggcgttgt 810
||||||||||||| |||||| | | |||||| ||||||||| | || | | ||||
Sbjct: 320 tgaagttgaaggccccgaagcgccggaagtacttgcacatgtccaagcgactctccttgt 379
Query: 811 ggtagccggcgagcgannnntcgtacgggtagccggggttgaggaacatgcgcagccgcg 870
|||||||| | || || ||||| ||||||||||||||||||||||||||||||||||
Sbjct: 380 ggtagccgacaagggactgctcgtaggggtagccggggttgaggaacatgcgcagccgcg 439
Query: 871 ncagcagcagctgggcgcccgggagctnnnnntcccagctgaacac 916
||| ||||| ||||| ||||||| ||||||||||||||
Sbjct: 440 acaggagcaggccagcgccggggagcttgttgtcccagctgaacac 485
>gb|CW269890.1|CW269890 104_741_11402081_116_35322_075 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11402081, DNA
sequence
Length = 645
Score = 270 bits (136), Expect = 2e-070
Identities = 292/346 (84%), Gaps = 1/346 (0%)
Strand = Plus / Minus
Query: 571 ctgagacctggcgaactcacggaggtcgttggtggtcatgaagtttggaccgcagtacca 630
||||||| |||||||| |||||||||| | ||||| ||||||||| || || ||||||||
Sbjct: 347 ctgagacttggcgaacgcacggaggtcttgggtgggcatgaagttggggccacagtacca 288
Query: 631 gccggggacgttgacggcctccatgtagtcggcgtagagcgcagcgagaaaggagttggc 690
||||||||||||| |||||||||||||||||| |||| || ||||| |||||||||||
Sbjct: 287 cccggggacgttgatcgcctccatgtagtcggcgaagagggcggcgaggaaggagttggc 228
Query: 691 gacgacgtactgcagcggctgccccctgccgtggttgaagagcgccatcccgcccttngg 750
||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||
Sbjct: 227 gaccacgtactgcagcggctgccccctgccgtggttgaagagcgccagcccgcccct-gg 169
Query: 751 tgaagttgaaggcggcgaagcccggaaagtacatgcacatgttgaggctggtggcgttgt 810
||||||||||||| |||||| | | |||||| ||||||||| | || | | ||||
Sbjct: 168 tgaagttgaaggccccgaagcgccggaagtacttgcacatgtccaagcgactctccttgt 109
Query: 811 ggtagccggcgagcgannnntcgtacgggtagccggggttgaggaacatgcgcagccgcg 870
|||||||| | || || ||||| ||||||||||||||||||||||||||||||||||
Sbjct: 108 ggtagccgacaagggactgctcgtaggggtagccggggttgaggaacatgcgcagccgcg 49
Query: 871 ncagcagcagctgggcgcccgggagctnnnnntcccagctgaacac 916
||| ||||| ||||| ||||||| ||||||||||||||
Sbjct: 48 acaggagcaggccagcgccggggagcttgttgtcccagctgaacac 3
Score = 218 bits (110), Expect = 8e-055
Identities = 152/166 (91%)
Strand = Plus / Minus
Query: 404 gggtccgctttcttgctgtcgcgccacttgtagccgccggtgcacgagtacttgacgccg 463
|||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct: 636 gggtccgccttcttgctgtcgcgccacttgtacccgccggtgcacgagtacttgacgcgg 577
Query: 464 ttgtgcggcgtggacgcgccacggtggtgcacgtgccgtgggtacttgctgccgaaccca 523
|||||||||| |||||||| ||||||||||||||||| ||||||||| ||||||| ||
Sbjct: 576 ctgtgcggcgtcgacgcgccccggtggtgcacgtgccgcgggtacttgttgccgaagccc 517
Query: 524 accacgtagctcatcttcttggggttgtcaccgagaatgtagttga 569
|||||||||||||||||| | |||||||| || |||||||||||||
Sbjct: 516 accacgtagctcatcttcctcgggttgtccccaagaatgtagttga 471
>gb|CW484465.1|CW484465 fsbb001f246j24f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f246j24, DNA
sequence
Length = 369
Score = 254 bits (128), Expect = 1e-065
Identities = 207/228 (90%), Gaps = 4/228 (1%)
Strand = Plus / Plus
Query: 161 ggcttccatgatgacggtggtggcggcgcggcggggaacattgtgcggcacggcggagaa 220
||||||||||| ||||| || ||||||||||| |||||||||| ||||||||||||||||
Sbjct: 113 ggcttccatgacgacggcggcggcggcgcggcagggaacattg-gcggcacggcggagaa 171
Query: 221 catggtgttcttgtcgacggcggttacggag-ctcccctgccgctgctggtgagagccac 279
||||||||||||| | |||||||| | | | |||||||||||||| |||||||||||||
Sbjct: 172 catggtgttcttggctacggcggtaatgccgactcccctgccgctgttggtgagagccac 231
Query: 280 cagggccgcgacgaggccggcgttgcctgaccagcgtcggctcgttctgcccgaa-gtgt 338
|| |||||| |||||||||||||||||| || ||||||||||||||||||||||| ||||
Sbjct: 232 catggccgccacgaggccggcgttgcct-acaagcgtcggctcgttctgcccgaaggtgt 290
Query: 339 tgcgcgagtccttgaagccgtcgttcttgtcgggcccgccgaccatgg 386
|||||||||||||||||||||||||| |||| |||||||| |||||||
Sbjct: 291 tgcgcgagtccttgaagccgtcgttcctgtctggcccgcctaccatgg 338
Score = 42.1 bits (21), Expect = 0.10
Identities = 36/40 (90%), Gaps = 2/40 (5%)
Strand = Plus / Plus
Query: 79 tggtattgtacagaagagaattcgcgcgcgtacgtgatcg 118
|||||||||||| |||| |||||||||||||| ||||||
Sbjct: 3 tggtattgtacaaaaga--attcgcgcgcgtacatgatcg 40
>gb|CW230234.1|CW230234 104_671_11207740_148_37266_002 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11207740, DNA
sequence
Length = 650
Score = 248 bits (125), Expect = 9e-064
Identities = 185/211 (87%)
Strand = Plus / Minus
Query: 754 agttgaaggcggcgaagcccggaaagtacatgcacatgttgaggctggtggcgttgtggt 813
||||||||| | |||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct: 650 agttgaaggagccgaagcgcgggaagtacatgcacatgttgaggctggtggcgttgtggt 591
Query: 814 agccggcgagcgannnntcgtacgggtagccggggttgaggaacatgcgcagccgcgnca 873
||||| |||||| |||||||||||||| ||||||||||||||||||||||||| ||
Sbjct: 590 agccgatgagcgactcctcgtacgggtagcccgggttgaggaacatgcgcagccgcgaca 531
Query: 874 gcagcagctgggcgcccgggagctnnnnntcccagctgaacacnnagaagtcgaggatgt 933
|||||||||| ||||||||||||| |||||||||||||| |||||||||||||||
Sbjct: 530 gcagcagctgcgcgcccgggagcttgttgtcccagctgaacaccgagaagtcgaggatgt 471
Query: 934 tgangnnnnccttggcgtncttgggcagccg 964
||| | ||||||||| ||||||||||||
Sbjct: 470 tgaagaaggccttggcgttcttgggcagccg 440
>gb|CW451021.1|CW451021 fsbb001f189o18k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f189o18, DNA
sequence
Length = 604
Score = 246 bits (124), Expect = 3e-063
Identities = 262/308 (85%), Gaps = 2/308 (0%)
Strand = Plus / Minus
Query: 263 ctgctggtgagagccaccagggccgcgacgaggccggcgttgcctgaccagcgtcggctc 322
|||||||||| ||||| || ||||| ||||||||||||||||| ||||||||||||||
Sbjct: 586 ctgctggtgacggccacgagcgccgccacgaggccggcgttgccc-accagcgtcggctc 528
Query: 323 gttctgcccgaagtgt-tgcgcgagtccttgaagccgtcgttcttgtcgggcccgccgac 381
| ||||||||||| |||||||||| ||||| | |||||| ||| |||||||| ||
Sbjct: 527 ggtctgcccgaaggccatgcgcgagtcgttgaacctgtcgttgcggtccggcccgcccac 468
Query: 382 catggnnnnnnnnagcaggttggggtccgctttcttgctgtcgcgccacttgtagccgcc 441
||| | | || ||| |||||||| ||||||||||||||||||||||| |||||
Sbjct: 467 catcgcgcccgtgatcacgttcgggtccgccttcttgctgtcgcgccacttgtacccgcc 408
Query: 442 ggtgcacgagtacttgacgccgttgtgcggcgtggacgcgccacggtggtgcacgtgccg 501
|||||||||||||||||||| | |||||||||| |||||||| |||||||||||||||||
Sbjct: 407 ggtgcacgagtacttgacgcggctgtgcggcgtcgacgcgccccggtggtgcacgtgccg 348
Query: 502 tgggtacttgctgccgaacccaaccacgtagctcatcttcttggggttgtcaccgagaat 561
||||||||| ||||||| || |||||||||||||||||| | |||||||| || |||||
Sbjct: 347 cgggtacttgttgccgaagcccaccacgtagctcatcttcctcgggttgtccccaagaat 288
Query: 562 gtagttga 569
||||||||
Sbjct: 287 gtagttga 280
Score = 153 bits (77), Expect = 4e-035
Identities = 125/141 (88%)
Strand = Plus / Minus
Query: 571 ctgagacctggcgaactcacggaggtcgttggtggtcatgaagtttggaccgcagtacca 630
||||||| |||||||| |||||||||| | ||||| ||||||||| || || ||||||||
Sbjct: 156 ctgagacttggcgaacgcacggaggtcttgggtgggcatgaagttggggccacagtacca 97
Query: 631 gccggggacgttgacggcctccatgtagtcggcgtagagcgcagcgagaaaggagttggc 690
||||||||||||| |||||||||||||||||| |||| || ||||| |||||||||||
Sbjct: 96 cccggggacgttgatcgcctccatgtagtcggcgaagagggcggcgaggaaggagttggc 37
Query: 691 gacgacgtactgcagcggctg 711
||| |||||||||||||||||
Sbjct: 36 gaccacgtactgcagcggctg 16
>gb|CW216644.1|CW216644 104_649_11195227_116_37125_072 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11195227, DNA
sequence
Length = 666
Score = 236 bits (119), Expect = 3e-060
Identities = 245/287 (85%), Gaps = 2/287 (0%)
Strand = Plus / Minus
Query: 284 gccgcgacgaggccggcgttgcctgaccagcgtcggctcgttctgcccgaagtgt-tgcg 342
||||| ||||||||||||||||| ||||||||||||||| ||||||||||| ||||
Sbjct: 662 gccgccacgaggccggcgttgccc-accagcgtcggctcggtctgcccgaaggccatgcg 604
Query: 343 cgagtccttgaagccgtcgttcttgtcgggcccgccgaccatggnnnnnnnnagcaggtt 402
|||||| ||||| | |||||| ||| |||||||| ||||| | | || |||
Sbjct: 603 cgagtcgttgaacctgtcgttgcggtccggcccgcccaccatcgcgcccgtgatcacgtt 544
Query: 403 ggggtccgctttcttgctgtcgcgccacttgtagccgccggtgcacgagtacttgacgcc 462
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 543 cgggtccgccttcttgctgtcgcgccacttgtacccgccggtgcacgagtacttgacgcg 484
Query: 463 gttgtgcggcgtggacgcgccacggtggtgcacgtgccgtgggtacttgctgccgaaccc 522
| |||||||||| |||||||| ||||||||||||||||| ||||||||| ||||||| ||
Sbjct: 483 gctgtgcggcgtcgacgcgccccggtggtgcacgtgccgcgggtacttgttgccgaagcc 424
Query: 523 aaccacgtagctcatcttcttggggttgtcaccgagaatgtagttga 569
|||||||||||||||||| | |||||||| || |||||||||||||
Sbjct: 423 caccacgtagctcatcttcctcgggttgtccccaagaatgtagttga 377
Score = 234 bits (118), Expect = 1e-059
Identities = 197/222 (88%), Gaps = 1/222 (0%)
Strand = Plus / Minus
Query: 571 ctgagacctggcgaactcacggaggtcgttggtggtcatgaagtttggaccgcagtacca 630
||||||| |||||||| |||||||||| | ||||| ||||||||| || || ||||||||
Sbjct: 253 ctgagacttggcgaacgcacggaggtcttgggtgggcatgaagttggggccacagtacca 194
Query: 631 gccggggacgttgacggcctccatgtagtcggcgtagagcgcagcgagaaaggagttggc 690
||||||||||||| |||||||||||||||||| |||| || ||||| |||||||||||
Sbjct: 193 cccggggacgttgatcgcctccatgtagtcggcgaagagggcggcgaggaaggagttggc 134
Query: 691 gacgacgtactgcagcggctgccccctgccgtggttgaagagcgccatcccgcccttngg 750
||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||
Sbjct: 133 gaccacgtactgcagcggctgccccctgccgtggttgaagagcgccagcccgcccct-gg 75
Query: 751 tgaagttgaaggcggcgaagcccggaaagtacatgcacatgt 792
||||||||||||| |||||| | | |||||| |||||||||
Sbjct: 74 tgaagttgaaggccccgaagcgccggaagtacttgcacatgt 33
>gb|CW236951.1|CW236951 104_693_11215895_116_37512_094 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11215895, DNA
sequence
Length = 706
Score = 220 bits (111), Expect = 2e-055
Identities = 172/187 (91%), Gaps = 4/187 (2%)
Strand = Plus / Plus
Query: 161 ggcttccatgatgacggtggtggcggcgcggcggggaacattgtgcggcacggcggagaa 220
||||||||||| ||||| || ||||||||||| |||||||||| ||||||||||||||||
Sbjct: 522 ggcttccatgacgacggcggcggcggcgcggcagggaacattg-gcggcacggcggagaa 580
Query: 221 catggtgttcttgtcgacggcggttacggag-ctcccctgccgctgctggtgagagccac 279
|||||||||||||||||||||||| | | | |||||||||||||| |||||||||||||
Sbjct: 581 catggtgttcttgtcgacggcggtaatgccgactcccctgccgctgttggtgagagccac 640
Query: 280 cagggccgcgacgaggccggcgttgcctgaccagcgtcggctcgttctgcccgaa-gtgt 338
||||||||| |||||||||||||||||| || ||||||||||||||||||||||| ||||
Sbjct: 641 cagggccgccacgaggccggcgttgcct-acaagcgtcggctcgttctgcccgaaggtgt 699
Query: 339 tgcgcga 345
|||||||
Sbjct: 700 tgcgcga 706
Score = 44.1 bits (22), Expect = 0.026
Identities = 37/41 (90%), Gaps = 2/41 (4%)
Strand = Plus / Plus
Query: 78 gtggtattgtacagaagagaattcgcgcgcgtacgtgatcg 118
||||||||||||| |||| |||||||||||||| ||||||
Sbjct: 411 gtggtattgtacaaaaga--attcgcgcgcgtacatgatcg 449
>gb|BE353094.1|BE353094 DG1_4_F07.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 380
Score = 196 bits (99), Expect = 3e-048
Identities = 153/167 (91%), Gaps = 3/167 (1%)
Strand = Plus / Minus
Query: 161 ggcttccatgatgacggtggtggcggcgcggcggggaacattgtgcggcacggcggagaa 220
||||||||||| ||||| || ||||||||||| |||||||||| ||||||||||||||||
Sbjct: 165 ggcttccatgacgacggcggcggcggcgcggcagggaacattg-gcggcacggcggagaa 107
Query: 221 catggtgttcttgtcgacggcggttacggag-ctcccctgccgctgctggtgagagccac 279
|||||||||||||||||||||||| | | | |||||||||||||| |||||||||||||
Sbjct: 106 catggtgttcttgtcgacggcggtaatgccgactcccctgccgctgttggtgagagccac 47
Query: 280 cagggccgcgacgaggccggcgttgcctgaccagcgtcggctcgttc 326
||||||||| |||||||||||||||||| || |||||||||||||||
Sbjct: 46 cagggccgccacgaggccggcgttgcct-acaagcgtcggctcgttc 1
Score = 44.1 bits (22), Expect = 0.026
Identities = 37/41 (90%), Gaps = 2/41 (4%)
Strand = Plus / Minus
Query: 78 gtggtattgtacagaagagaattcgcgcgcgtacgtgatcg 118
||||||||||||| |||| |||||||||||||| ||||||
Sbjct: 276 gtggtattgtacaaaaga--attcgcgcgcgtacatgatcg 238
>gb|CW050340.1|CW050340 104_290_10514603_115_30205 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10514603, DNA
sequence
Length = 323
Score = 186 bits (94), Expect = 3e-045
Identities = 142/158 (89%)
Strand = Plus / Minus
Query: 571 ctgagacctggcgaactcacggaggtcgttggtggtcatgaagtttggaccgcagtacca 630
||||||| |||||||| |||||||||| | ||||| ||||||||| || || ||||||||
Sbjct: 158 ctgagacttggcgaacgcacggaggtcttgggtgggcatgaagttggggccacagtacca 99
Query: 631 gccggggacgttgacggcctccatgtagtcggcgtagagcgcagcgagaaaggagttggc 690
||||||||||||| |||||||||||||||||| |||| || ||||| |||||||||||
Sbjct: 98 cccggggacgttgatcgcctccatgtagtcggcgaagagggcggcgaggaaggagttggc 39
Query: 691 gacgacgtactgcagcggctgccccctgccgtggttga 728
||| ||||||||||||||||||||||||||||||||||
Sbjct: 38 gaccacgtactgcagcggctgccccctgccgtggttga 1
Score = 52.0 bits (26), Expect = 1e-004
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 528 cgtagctcatcttcttggggttgtcaccgagaatgtagttga 569
|||||||||||||| | |||||||| || |||||||||||||
Sbjct: 323 cgtagctcatcttcctcgggttgtccccaagaatgtagttga 282
>gb|CW388823.1|CW388823 fsbb001f073l23k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f073l23, DNA
sequence
Length = 553
Score = 119 bits (60), Expect = 5e-025
Identities = 79/84 (94%), Gaps = 1/84 (1%)
Strand = Plus / Plus
Query: 161 ggcttccatgatgacggtggtggcggcgcggcggggaacattgtgcggcacggcggagaa 220
||||||||||| ||||| || ||||||||||| |||||||||| ||||||||||||||||
Sbjct: 450 ggcttccatgacgacggcggcggcggcgcggcagggaacattg-gcggcacggcggagaa 508
Query: 221 catggtgttcttgtcgacggcggt 244
||||||||||||||||||||||||
Sbjct: 509 catggtgttcttgtcgacggcggt 532
Score = 44.1 bits (22), Expect = 0.026
Identities = 37/41 (90%), Gaps = 2/41 (4%)
Strand = Plus / Plus
Query: 78 gtggtattgtacagaagagaattcgcgcgcgtacgtgatcg 118
||||||||||||| |||| |||||||||||||| ||||||
Sbjct: 339 gtggtattgtacaaaaga--attcgcgcgcgtacatgatcg 377
>gb|CL152796.1|CL152796 104_336_10780238_114_31365_254 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10780238, DNA
sequence
Length = 240
Score = 95.6 bits (48), Expect = 8e-018
Identities = 113/132 (85%), Gaps = 2/132 (1%)
Strand = Plus / Plus
Query: 205 gcggcacggcggagaacatggtgttcttgtcgacggcggttacggag-ctcccctgccgc 263
|||||||||||||||||||| ||||||||||||||||| ||| | | || | ||| |
Sbjct: 60 gcggcacggcggagaacatgctgttcttgtcgacggcgccgacgccgacgccgcggccac 119
Query: 264 tgctggtgagagccaccagggccgcgacgaggccggcgttgcctgaccagcgtcggctcg 323
||||||||| ||||| || ||||| ||||||||||||||||| |||||||||||||||
Sbjct: 120 tgctggtgacggccacgagcgccgccacgaggccggcgttgcc-caccagcgtcggctcg 178
Query: 324 ttctgcccgaag 335
|||||||||||
Sbjct: 179 gtctgcccgaag 190
>gb|CW258955.1|CW258955 104_725_11228161_116_35182_013 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11228161, DNA
sequence
Length = 428
Score = 95.6 bits (48), Expect = 8e-018
Identities = 113/132 (85%), Gaps = 2/132 (1%)
Strand = Plus / Minus
Query: 205 gcggcacggcggagaacatggtgttcttgtcgacggcggttacggag-ctcccctgccgc 263
|||||||||||||||||||| ||||||||||||||||| ||| | | || | ||| |
Sbjct: 157 gcggcacggcggagaacatgctgttcttgtcgacggcgccgacgccgacgccgcggccac 98
Query: 264 tgctggtgagagccaccagggccgcgacgaggccggcgttgcctgaccagcgtcggctcg 323
||||||||| ||||| || ||||| ||||||||||||||||| |||||||||||||||
Sbjct: 97 tgctggtgacggccacgagcgccgccacgaggccggcgttgcc-caccagcgtcggctcg 39
Query: 324 ttctgcccgaag 335
|||||||||||
Sbjct: 38 gtctgcccgaag 27
>gb|CW216645.1|CW216645 104_649_11195227_148_37126_072 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11195227, DNA
sequence
Length = 658
Score = 79.8 bits (40), Expect = 5e-013
Identities = 102/120 (85%), Gaps = 2/120 (1%)
Strand = Plus / Plus
Query: 205 gcggcacggcggagaacatggtgttcttgtcgacggcggttacggag-ctcccctgccgc 263
|||||||||||||||||||| ||||||||||||||||| ||| | | || | ||| |
Sbjct: 496 gcggcacggcggagaacatgctgttcttgtcgacggcgccgacgccgacgccgcggccac 555
Query: 264 tgctggtgagagccaccagggccgcgacgaggccggcgttgcctgaccagcgtcggctcg 323
||||||||| ||||| || ||||| ||||||||||||||||| |||||||||||||||
Sbjct: 556 tgctggtgacggccacgagcgccgccacgaggccggcgttgcc-caccagcgtcggctcg 614
>gb|CW383134.1|CW383134 fsbb001f065h18f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f065h18, DNA
sequence
Length = 583
Score = 61.9 bits (31), Expect = 1e-007
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 352 gaagccgtcgttcttgtcgggcccgccgaccatgg 386
|||||||||||||||||||||||||||||| ||||
Sbjct: 443 gaagccgtcgttcttgtcgggcccgccgacgatgg 477
>gb|CF481671.1|CF481671 POL1_73_G11.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_73_G11_A002 3', mRNA sequence
Length = 440
Score = 61.9 bits (31), Expect = 1e-007
Identities = 34/35 (97%)
Strand = Plus / Minus
Query: 352 gaagccgtcgttcttgtcgggcccgccgaccatgg 386
|||||||||||||||||||||||||||||| ||||
Sbjct: 40 gaagccgtcgttcttgtcgggcccgccgacaatgg 6
>gb|CL182230.1|CL182230 104_393_10897285_116_31922_277 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10897285, DNA
sequence
Length = 555
Score = 56.0 bits (28), Expect = 7e-006
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 469 cggcgtggacgcgccacggtggtgcacgtgccgtgggtac 508
|||| |||||||||| ||||||||||||||||| ||||||
Sbjct: 380 cggcatggacgcgccgcggtggtgcacgtgccgcgggtac 419
>gb|CD225907.1|CD225907 CCC1_42_G11.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_42_G11_A007 3', mRNA sequence
Length = 300
Score = 50.1 bits (25), Expect = 4e-004
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 469 cggcgtggacgcgccacggtggtgcacgtgccg 501
|||| |||||||||| |||||||||||||||||
Sbjct: 36 cggcatggacgcgccgcggtggtgcacgtgccg 4
>gb|CW073535.1|CW073535 104_336_10780238_116_31366_254 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10780238, DNA
sequence
Length = 75
Score = 46.1 bits (23), Expect = 0.007
Identities = 59/73 (80%)
Strand = Plus / Minus
Query: 844 cggggttgaggaacatgcgcagccgcgncagcagcagctgggcgcccgggagctnnnnnt 903
|||||||| ||||||||||||||| || ||| ||||| ||||| ||||||| |
Sbjct: 75 cggggttgtggaacatgcgcagcctcgacaggagcagtccagcgccggggagcttgttgt 16
Query: 904 cccagctgaacac 916
|||||||||||||
Sbjct: 15 cccagctgaacac 3
>gb|CW091140.1|CW091140 104_451_10997705_116_32541_033 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10997705, DNA
sequence
Length = 717
Score = 42.1 bits (21), Expect = 0.10
Identities = 69/85 (81%)
Strand = Plus / Minus
Query: 474 tggacgcgccacggtggtgcacgtgccgtgggtacttgctgccgaacccaaccacgtagc 533
|||||||||| ||||||||||| || | ||||| || |||||| || || | |||||
Sbjct: 599 tggacgcgccgcggtggtgcacccgctgcgggtaggtgtcgccgaagccgacgaggtagc 540
Query: 534 tcatcttcttggggttgtcaccgag 558
||| |||| |||||||||| |||||
Sbjct: 539 tcagcttcatggggttgtcgccgag 515
>gb|CW159691.1|CW159691 104_566_11149490_148_36423_015 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11149490, DNA
sequence
Length = 659
Score = 40.1 bits (20), Expect = 0.40
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 518 aacccaaccacgtagctcatcttc 541
||||||||||| ||||||||||||
Sbjct: 387 aacccaaccacatagctcatcttc 410
>gb|CW163891.1|CW163891 104_571_11151698_116_36456_003 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11151698, DNA
sequence
Length = 692
Score = 40.1 bits (20), Expect = 0.40
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 518 aacccaaccacgtagctcatcttc 541
||||||||||| ||||||||||||
Sbjct: 344 aacccaaccacatagctcatcttc 367
>gb|CW212992.1|CW212992 104_644_11191313_116_37026_073 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11191313, DNA
sequence
Length = 633
Score = 40.1 bits (20), Expect = 0.40
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 518 aacccaaccacgtagctcatcttc 541
||||||||||| ||||||||||||
Sbjct: 82 aacccaaccacatagctcatcttc 59
>gb|CW407797.1|CW407797 fsbb001f101g18f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f101g18, DNA
sequence
Length = 731
Score = 40.1 bits (20), Expect = 0.40
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 518 aacccaaccacgtagctcatcttc 541
||||||||||| ||||||||||||
Sbjct: 271 aacccaaccacatagctcatcttc 248
>gb|CW407798.1|CW407798 fsbb001f101g18k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f101g18, DNA
sequence
Length = 838
Score = 40.1 bits (20), Expect = 0.40
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 518 aacccaaccacgtagctcatcttc 541
||||||||||| ||||||||||||
Sbjct: 707 aacccaaccacatagctcatcttc 730
>gb|CD220687.1|CD220687 CCC1_68_E02.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_68_E02_A007 5', mRNA sequence
Length = 606
Score = 40.1 bits (20), Expect = 0.40
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 518 aacccaaccacgtagctcatcttc 541
||||||||||| ||||||||||||
Sbjct: 538 aacccaaccacatagctcatcttc 515
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 261,334
Number of Sequences: 832831
Number of extensions: 261334
Number of successful extensions: 76645
Number of sequences better than 0.5: 43
Number of HSP's better than 0.5 without gapping: 42
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 76433
Number of HSP's gapped (non-prelim): 130
length of query: 1046
length of database: 491,359,669
effective HSP length: 20
effective length of query: 1026
effective length of database: 474,703,049
effective search space: 487045328274
effective search space used: 487045328274
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)