BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 7297169.2.1
(545 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW255966.1|CW255966 104_720_11226522_116_35133_067 Sorgh... 726 0.0
gb|BE361069.1|BE361069 DG1_69_C12.b1_A002 Dark Grown 1 (DG1... 700 0.0
gb|CW303743.1|CW303743 104_788_11465403_148_35697_010 Sorgh... 210 1e-052
gb|CW393143.1|CW393143 fsbb001f080b08f0 Sorghum methylation... 159 3e-037
gb|CW452020.1|CW452020 fsbb001f192f19k0 Sorghum methylation... 147 1e-033
gb|CW491119.1|CW491119 fsbb001f280n17k0 Sorghum methylation... 145 5e-033
gb|BG947100.1|BG947100 IP1_2_E12.b1_A002 Immature pannicle ... 145 5e-033
gb|CW109571.1|CW109571 104_481_11098199_148_34501_082 Sorgh... 137 1e-030
gb|CL187437.1|CL187437 104_403_10900884_114_32462_048 Sorgh... 133 2e-029
gb|CW360059.1|CW360059 fsbb001f027p14f0 Sorghum methylation... 133 2e-029
gb|BZ626315.1|BZ626315 ih45a09.b1 WGS-SbicolorF (DH5a methy... 121 7e-026
gb|CW229961.1|CW229961 104_671_11207596_116_37270_008 Sorgh... 121 7e-026
gb|CW425473.1|CW425473 fsbb001f136g02f0 Sorghum methylation... 121 7e-026
gb|BG649782.1|BG649782 RHIZ2_83_E07.b1_A003 Rhizome2 (RHIZ2... 121 7e-026
gb|CL187783.1|CL187783 104_403_10901130_114_32462_069 Sorgh... 80 2e-013
gb|BI075351.1|BI075351 IP1_19_E02.b1_A002 Immature pannicle... 76 4e-012
gb|CW066203.1|CW066203 104_313_10523562_114_30148 Sorghum m... 70 2e-010
gb|CL153266.1|CL153266 104_337_10780600_114_31367_232 Sorgh... 68 9e-010
gb|CW060260.1|CW060260 104_303_10519760_5_30087 Sorghum met... 68 9e-010
gb|CW174026.1|CW174026 104_586_11157172_148_36560_016 Sorgh... 68 9e-010
gb|CW199328.1|CW199328 104_624_11183452_148_36855_010 Sorgh... 68 9e-010
gb|CW251809.1|CW251809 104_714_11224139_116_35066_038 Sorgh... 68 9e-010
gb|CW376754.1|CW376754 fsbb001f054m13f0 Sorghum methylation... 66 4e-009
gb|CW381890.1|CW381890 fsbb001f063i04f0 Sorghum methylation... 66 4e-009
gb|CW270306.1|CW270306 104_741_11402339_116_35324_034 Sorgh... 64 1e-008
gb|CW092898.1|CW092898 104_455_10999447_116_33049_020 Sorgh... 62 6e-008
gb|BG048637.1|BG048637 OV1_21_B08.b1_A002 Ovary 1 (OV1) Sor... 62 6e-008
gb|CL164583.1|CL164583 104_358_10808008_114_31814_376 Sorgh... 60 2e-007
gb|CL189532.1|CL189532 104_406_10902361_116_32473_001 Sorgh... 60 2e-007
gb|CW227593.1|CW227593 104_667_11205889_116_37239_013 Sorgh... 60 2e-007
gb|BG053293.1|BG053293 RHIZ2_25_F03.b1_A003 Rhizome2 (RHIZ2... 60 2e-007
gb|CW205174.1|CW205174 104_633_11186932_116_36928_008 Sorgh... 58 9e-007
gb|CW225261.1|CW225261 104_662_11204256_148_37205_084 Sorgh... 58 9e-007
gb|CW211871.1|CW211871 104_642_11190728_116_37013_018 Sorgh... 54 1e-005
gb|CW241952.1|CW241952 104_701_11219059_116_37551_074 Sorgh... 54 1e-005
gb|CW241953.1|CW241953 104_701_11219059_148_37552_074 Sorgh... 54 1e-005
gb|CW366979.1|CW366979 fsbb001f040d13f0 Sorghum methylation... 54 1e-005
gb|CW425847.1|CW425847 fsbb001f136p13f0 Sorghum methylation... 54 1e-005
gb|CW494040.1|CW494040 fsbb001f285b17f0 Sorghum methylation... 54 1e-005
gb|BG560568.1|BG560568 RHIZ2_59_A07.b1_A003 Rhizome2 (RHIZ2... 54 1e-005
gb|CD426311.1|CD426311 SA1_19_G04.g1_A002 Salicylic acid-tr... 54 1e-005
gb|CL174129.1|CL174129 104_378_10891366_116_31771_118 Sorgh... 52 5e-005
gb|CW059282.1|CW059282 104_302_10519227_115_30168 Sorghum m... 52 5e-005
gb|CW391618.1|CW391618 fsbb001f077n14k0 Sorghum methylation... 52 5e-005
gb|BI099312.1|BI099312 IP1_37_E02.b1_A002 Immature pannicle... 52 5e-005
gb|CB925652.1|CB925652 ABA1_22_H04.g1_A012 Abscisic acid-tr... 52 5e-005
gb|BH245569.1|BH245569 pSB0925 S. bicolor BTx623 PstI-diges... 50 2e-004
gb|CL163631.1|CL163631 104_357_10807284_114_31812_036 Sorgh... 50 2e-004
gb|CW033319.1|CW033319 104_262_10501889_114_30361 Sorghum m... 50 2e-004
gb|CW057101.1|CW057101 104_299_10518040_115_30171 Sorghum m... 50 2e-004
gb|CW217246.1|CW217246 104_650_11195553_148_37134_041 Sorgh... 50 2e-004
gb|CW392626.1|CW392626 fsbb001f079f07f0 Sorghum methylation... 50 2e-004
gb|CW466796.1|CW466796 fsbb001f218d06k0 Sorghum methylation... 50 2e-004
gb|CW222814.1|CW222814 104_658_11202576_116_37184_090 Sorgh... 48 8e-004
gb|CW222815.1|CW222815 104_658_11202576_148_37183_090 Sorgh... 48 8e-004
gb|CW287871.1|CW287871 104_766_11411646_148_37442_029 Sorgh... 48 8e-004
gb|CW465456.1|CW465456 fsbb001f216d20f0 Sorghum methylation... 48 8e-004
gb|BG357867.1|BG357867 OV2_31_C05.b1_A002 Ovary 2 (OV2) Sor... 48 8e-004
gb|CL162366.1|CL162366 104_354_10806358_114_31830_262 Sorgh... 46 0.003
gb|CL162367.1|CL162367 104_354_10806358_116_31831_262 Sorgh... 46 0.003
gb|CW022787.1|CW022787 104_162_10432058_1_30008 Sorghum met... 46 0.003
gb|CW189377.1|CW189377 104_610_11173931_148_37098_038 Sorgh... 46 0.003
gb|CW219196.1|CW219196 104_653_11196606_148_37143_029 Sorgh... 46 0.003
gb|CW246165.1|CW246165 104_707_11221230_148_35089_031 Sorgh... 46 0.003
gb|CW246166.1|CW246166 104_707_11221230_148_37607_031 Sorgh... 46 0.003
gb|CW253341.1|CW253341 104_716_11225033_116_35104_065 Sorgh... 46 0.003
gb|CW263007.1|CW263007 104_730_11230404_116_35227_034 Sorgh... 46 0.003
gb|CW299789.1|CW299789 104_782_11463303_148_35686_050 Sorgh... 46 0.003
gb|CW366444.1|CW366444 fsbb001f039h08f0 Sorghum methylation... 46 0.003
gb|CW379994.1|CW379994 fsbb001f059j02k0 Sorghum methylation... 46 0.003
gb|CW429837.1|CW429837 fsbb001f143e13k0 Sorghum methylation... 46 0.003
gb|CW496898.1|CW496898 fsbb001f289g01f0 Sorghum methylation... 46 0.003
gb|CW501125.1|CW501125 fsbb001f296m14f0 Sorghum methylation... 46 0.003
gb|BG048569.1|BG048569 OV1_14_C08.b1_A002 Ovary 1 (OV1) Sor... 46 0.003
gb|BI098380.1|BI098380 IP1_31_E03.b1_A002 Immature pannicle... 46 0.003
gb|AW746615.1|AW746615 WS1_54_F08.b1_A002 Water-stressed 1 ... 44 0.013
gb|BM317486.1|BM317486 LG1_332_C02.b9_A002 Light Grown 1 (L... 44 0.013
gb|CF427726.1|CF427726 PH1_10_D04.g1_A002 Phosphorous-defic... 44 0.013
gb|CN133838.1|CN133838 OX1_18_D05.g1_A002 Oxidatively-stres... 44 0.013
gb|CL153978.1|CL153978 104_338_10781078_114_31369_326 Sorgh... 42 0.052
gb|CW058617.1|CW058617 104_301_10518840_114_30160 Sorghum m... 42 0.052
gb|CW134401.1|CW134401 104_518_11117286_116_34821_021 Sorgh... 42 0.052
gb|CW188425.1|CW188425 104_608_11173025_148_36730_075 Sorgh... 42 0.052
gb|CW203794.1|CW203794 104_631_11186202_148_37094_071 Sorgh... 42 0.052
gb|CW217507.1|CW217507 104_650_11195691_148_37134_004 Sorgh... 42 0.052
gb|CW222317.1|CW222317 104_657_11202311_148_37174_084 Sorgh... 42 0.052
gb|CW320492.1|CW320492 104_813_11475040_148_35895_056 Sorgh... 42 0.052
gb|CW443990.1|CW443990 fsbb001f164f23k0 Sorghum methylation... 42 0.052
gb|CW451195.1|CW451195 fsbb001f191c18k0 Sorghum methylation... 42 0.052
gb|CW493938.1|CW493938 fsbb001f284p05k0 Sorghum methylation... 42 0.052
gb|CW496439.1|CW496439 fsbb001f288l04f0 Sorghum methylation... 42 0.052
gb|BF705220.1|BF705220 RHIZ2_2_B09.b1_A003 Rhizome2 (RHIZ2)... 42 0.052
gb|BG104025.1|BG104025 RHIZ2_39_F02.b1_A003 Rhizome2 (RHIZ2... 42 0.052
gb|BI140646.1|BI140646 IP1_52_A02.b1_A002 Immature pannicle... 42 0.052
gb|CW059281.1|CW059281 104_302_10519227_114_30162 Sorghum m... 40 0.21
gb|CW157026.1|CW157026 104_560_11147005_116_36379_059 Sorgh... 40 0.21
gb|CW157027.1|CW157027 104_560_11147005_148_36380_059 Sorgh... 40 0.21
gb|CW303880.1|CW303880 104_788_11465475_116_35691_006 Sorgh... 40 0.21
gb|CW329551.1|CW329551 104_826_11479904_116_35998_030 Sorgh... 40 0.21
gb|CW329552.1|CW329552 104_826_11479904_148_35997_030 Sorgh... 40 0.21
gb|CW404327.1|CW404327 fsbb001f096g19k0 Sorghum methylation... 40 0.21
>gb|CW255966.1|CW255966 104_720_11226522_116_35133_067 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11226522, DNA
sequence
Length = 521
Score = 726 bits (366), Expect = 0.0
Identities = 408/422 (96%)
Strand = Plus / Minus
Query: 1 cacctcgtgccggcgactatggtcgggcagaagttcggcgacaagatcaggtactacgtc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 426 cacctcgtgccggcgactatggtcgggcagaagttcggcgacaagatcaggtattacgtc 367
Query: 61 cagacggacccgtcgccaacggcgaccatcgtgttccgcggcacagtcatcggcaagtcg 120
||||||||||||||||| |||||||||||| ||||||||||||| |||||||||||||||
Sbjct: 366 cagacggacccgtcgccgacggcgaccatcatgttccgcggcacggtcatcggcaagtcg 307
Query: 121 ccgtcggcgcctcgagtggcggcgttctcgagccgaggccccaactaccgcgcaccggag 180
||||||||||| | |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 306 ccgtcggcgccgcaggtggcggcgttctcgagccgaggccccaactaccgcgcgccggag 247
Query: 181 atcctcaagcccgacgtcatcgccccgggcgtcaacatactcgcggcgtggaccggcgcc 240
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 246 atcctcaagcccgacgtcatcgcccccggcgtcaacatactcgcggcgtggaccggcgcc 187
Query: 241 gcctcccccaccgacctggacatcgactcgaggcgcgtggagttcaacatcatctccggc 300
|||||||| ||||| |||||||||||| |||||||||| ||||||||||||||||||||
Sbjct: 186 gcctccccaaccgatctggacatcgacacgaggcgcgtcgagttcaacatcatctccggg 127
Query: 301 acgtccatgtcctgcccgcacgtgagcggcctcgccgcgctgctccgccaggcgcacccg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 acgtccatgtcctgcccgcacgtgagcggcctcgccgcgctgctccgccaggcgcacccg 67
Query: 361 gagtggagccccgcggcgatcaagtcggcgctcatgaccacggcgtacaacctggacaac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 gagtggagccccgcggcgatcaagtcggcgctcatgaccacggcgtacaacctggacaac 7
Query: 421 tc 422
||
Sbjct: 6 tc 5
>gb|BE361069.1|BE361069 DG1_69_C12.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 617
Score = 700 bits (353), Expect = 0.0
Identities = 389/401 (97%)
Strand = Plus / Plus
Query: 137 tggcggcgttctcgagccgaggccccaactaccgcgcaccggagatcctcaagcccgacg 196
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1 tggcggcgttctcgagccgaggccccaactaccgcgcgccggagatcctcaagcccgacg 60
Query: 197 tcatcgccccgggcgtcaacatactcgcggcgtggaccggcgccgcctcccccaccgacc 256
|||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct: 61 tcatcgcccccggcgtcaacatactcgcggcgtggaccggcgccgcctccccaaccgatc 120
Query: 257 tggacatcgactcgaggcgcgtggagttcaacatcatctccggcacgtccatgtcctgcc 316
||||||||||| |||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct: 121 tggacatcgacacgaggcgcgtcgagttcaacatcatctccgggacgtccatgtcctgcc 180
Query: 317 cgcacgtgagcggcctcgccgcgctgctccgccaggcgcacccggagtggagccccgcgg 376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 cgcacgtgagcggcctcgccgcgctgctccgccaggcgcacccggagtggagccccgcgg 240
Query: 377 cgatcaagtcggcgctcatgaccacggcgtacaacctggacaactccggggaaaccatca 436
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct: 241 cgatcaagtcggcgctcatgaccacggcgtacaacctggacaactcaggggagaccatca 300
Query: 437 aggacctcgcgacgggcgtggagtcgacgccgttcgtccgtggcgccggtcacgtcgacc 496
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 301 aggacctcgcgacgggcgtggagtcgacgccgttcgtccgtggcgccggccacgtcgacc 360
Query: 497 ccaacgccgccctcgacccaaggctggtgtacgacgccggc 537
||||||||||||||||||| ||||||||||||||||||||
Sbjct: 361 ccaacgccgccctcgacccggggctggtgtacgacgccggc 401
>gb|CW303743.1|CW303743 104_788_11465403_148_35697_010 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11465403, DNA
sequence
Length = 743
Score = 210 bits (106), Expect = 1e-052
Identities = 304/370 (82%)
Strand = Plus / Plus
Query: 175 ccggagatcctcaagcccgacgtcatcgccccgggcgtcaacatactcgcggcgtggacc 234
||||||||||||||||| ||||| | |||||| || ||| |||| || || |||||||||
Sbjct: 113 ccggagatcctcaagccggacgtgaccgcccctggtgtcgacatcctagccgcgtggacc 172
Query: 235 ggcgccgcctcccccaccgacctggacatcgactcgaggcgcgtggagttcaacatcatc 294
|||| ||| || | | || |||| |||| ||||||| ||| ||| ||||||||||
Sbjct: 173 ggcgagaactcgccgtcgcagctcgacagcgacccgaggcgggtgaagtacaacatcatc 232
Query: 295 tccggcacgtccatgtcctgcccgcacgtgagcggcctcgccgcgctgctccgccaggcg 354
||||||||||||||||| ||||| |||||||||||| |||||||||||||||| |||||
Sbjct: 233 tccggcacgtccatgtcgtgccctcacgtgagcggcatcgccgcgctgctccggcaggct 292
Query: 355 cacccggagtggagccccgcggcgatcaagtcggcgctcatgaccacggcgtacaacctg 414
||||| ||||||||||| ||||||||||| ||||| |||||||| ||||||||| |
Sbjct: 293 aggccggaatggagccccgccgcgatcaagtccgcgctgatgaccaccgcgtacaacgtc 352
Query: 415 gacaactccggggaaaccatcaaggacctcgcgacgggcgtggagtcgacgccgttcgtc 474
|||| | ||||||| | |||||||||| | |||| ||| || |||||||||||||||
Sbjct: 353 gacagcgccggggatatcatcaaggacatgtcgactggcaaggcgtcgacgccgttcgtg 412
Query: 475 cgtggcgccggtcacgtcgaccccaacgccgccctcgacccaaggctggtgtacgacgcc 534
|| || ||||| ||||| ||||| ||| ||| ||||||| | || ||||||||||||
Sbjct: 413 cgcggggccggccacgtggacccgaaccgcgcggtcgacccgggcctcgtgtacgacgcc 472
Query: 535 ggctccgacg 544
||| ||||||
Sbjct: 473 ggcgccgacg 482
>gb|CW393143.1|CW393143 fsbb001f080b08f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f080b08, DNA
sequence
Length = 248
Score = 159 bits (80), Expect = 3e-037
Identities = 128/144 (88%)
Strand = Plus / Minus
Query: 264 cgactcgaggcgcgtggagttcaacatcatctccggcacgtccatgtcctgcccgcacgt 323
|||| ||||||| ||| |||||||||| |||||||||||||||||||| ||||| |||||
Sbjct: 144 cgacacgaggcgggtgaagttcaacattatctccggcacgtccatgtcgtgccctcacgt 85
Query: 324 gagcggcctcgccgcgctgctccgccaggcgcacccggagtggagccccgcggcgatcaa 383
||||||| |||||||||||||||| |||||| ||||| ||||||||||| ||||||||
Sbjct: 84 gagcggcatcgccgcgctgctccggcaggcgtggccggactggagccccgccgcgatcaa 25
Query: 384 gtcggcgctcatgaccacggcgta 407
||| ||||| |||||||| |||||
Sbjct: 24 gtccgcgctgatgaccaccgcgta 1
>gb|CW452020.1|CW452020 fsbb001f192f19k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f192f19, DNA
sequence
Length = 387
Score = 147 bits (74), Expect = 1e-033
Identities = 122/138 (88%)
Strand = Plus / Plus
Query: 274 cgcgtggagttcaacatcatctccggcacgtccatgtcctgcccgcacgtgagcggcctc 333
||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||| ||
Sbjct: 204 cgcgtgggcttcaacatcatctccgggacgtccatgtcgtgcccgcacgtgagcgggctt 263
Query: 334 gccgcgctgctccgccaggcgcacccggagtggagccccgcggcgatcaagtcggcgctc 393
|| |||||||||||| ||||||||||||||||||||| || || ||| |||||||||
Sbjct: 264 gcggcgctgctccgcgcggcgcacccggagtggagcccggcagccatccggtcggcgctg 323
Query: 394 atgaccacggcgtacaac 411
||||| ||||||||||||
Sbjct: 324 atgacgacggcgtacaac 341
Score = 46.1 bits (23), Expect = 0.003
Identities = 44/51 (86%)
Strand = Plus / Plus
Query: 181 atcctcaagcccgacgtcatcgccccgggcgtcaacatactcgcggcgtgg 231
||||| ||||| ||||||||||| || ||||| ||||| || |||||||||
Sbjct: 111 atcctgaagccggacgtcatcgcgcccggcgtgaacattctggcggcgtgg 161
>gb|CW491119.1|CW491119 fsbb001f280n17k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f280n17, DNA
sequence
Length = 440
Score = 145 bits (73), Expect = 5e-033
Identities = 115/129 (89%)
Strand = Plus / Plus
Query: 283 ttcaacatcatctccggcacgtccatgtcctgcccgcacgtgagcggcctcgccgcgctg 342
||||||||||||||||| ||||||||||| ||||||||||||||||| || || ||||||
Sbjct: 9 ttcaacatcatctccgggacgtccatgtcgtgcccgcacgtgagcgggcttgcggcgctg 68
Query: 343 ctccgccaggcgcacccggagtggagccccgcggcgatcaagtcggcgctcatgaccacg 402
|||||| ||||||||||||||||||||| || || ||| ||||||||| ||||| |||
Sbjct: 69 ctccgcgcggcgcacccggagtggagcccggcagccatccggtcggcgctgatgacgacg 128
Query: 403 gcgtacaac 411
|||||||||
Sbjct: 129 gcgtacaac 137
>gb|BG947100.1|BG947100 IP1_2_E12.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 358
Score = 145 bits (73), Expect = 5e-033
Identities = 115/129 (89%)
Strand = Plus / Plus
Query: 283 ttcaacatcatctccggcacgtccatgtcctgcccgcacgtgagcggcctcgccgcgctg 342
||||||||||||||||| ||||||||||| ||||||||||||||||| || || ||||||
Sbjct: 15 ttcaacatcatctccgggacgtccatgtcgtgcccgcacgtgagcgggcttgcggcgctg 74
Query: 343 ctccgccaggcgcacccggagtggagccccgcggcgatcaagtcggcgctcatgaccacg 402
|||||| ||||||||||||||||||||| || || ||| ||||||||| ||||| |||
Sbjct: 75 ctccgcgcggcgcacccggagtggagcccggcagccatccggtcggcgctgatgacgacg 134
Query: 403 gcgtacaac 411
|||||||||
Sbjct: 135 gcgtacaac 143
>gb|CW109571.1|CW109571 104_481_11098199_148_34501_082 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11098199, DNA
sequence
Length = 425
Score = 137 bits (69), Expect = 1e-030
Identities = 114/129 (88%)
Strand = Plus / Minus
Query: 283 ttcaacatcatctccggcacgtccatgtcctgcccgcacgtgagcggcctcgccgcgctg 342
||||||||||| ||||| ||||||||||| ||||||||||||||||| || || ||||||
Sbjct: 407 ttcaacatcatgtccgggacgtccatgtcgtgcccgcacgtgagcgggcttgcggcgctg 348
Query: 343 ctccgccaggcgcacccggagtggagccccgcggcgatcaagtcggcgctcatgaccacg 402
|||||| ||||||||||||||||||||| || || ||| ||||||||| ||||| |||
Sbjct: 347 ctccgcgcggcgcacccggagtggagcccggcagccatccggtcggcgctgatgacgacg 288
Query: 403 gcgtacaac 411
|||||||||
Sbjct: 287 gcgtacaac 279
>gb|CL187437.1|CL187437 104_403_10900884_114_32462_048 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10900884, DNA
sequence
Length = 496
Score = 133 bits (67), Expect = 2e-029
Identities = 118/135 (87%)
Strand = Plus / Minus
Query: 274 cgcgtggagttcaacatcatctccggcacgtccatgtcctgcccgcacgtgagcggcctc 333
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct: 399 cgcgtgggcttcaacatcatctccggcacgtccatgtcgtgcccgcacgtgagcgggcta 340
Query: 334 gccgcgctgctccgccaggcgcacccggagtggagccccgcggcgatcaagtcggcgctc 393
|| ||||||||||| ||||||||||||||||||||||| || | |||||||||
Sbjct: 339 gcggcgctgctccggagcgcgcacccggagtggagccccgccgccgtgcggtcggcgctg 280
Query: 394 atgaccacggcgtac 408
|||||||||||||||
Sbjct: 279 atgaccacggcgtac 265
>gb|CW360059.1|CW360059 fsbb001f027p14f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f027p14, DNA
sequence
Length = 601
Score = 133 bits (67), Expect = 2e-029
Identities = 118/135 (87%)
Strand = Plus / Plus
Query: 274 cgcgtggagttcaacatcatctccggcacgtccatgtcctgcccgcacgtgagcggcctc 333
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct: 83 cgcgtgggcttcaacatcatctccggcacgtccatgtcgtgcccgcacgtgagcgggcta 142
Query: 334 gccgcgctgctccgccaggcgcacccggagtggagccccgcggcgatcaagtcggcgctc 393
|| ||||||||||| ||||||||||||||||||||||| || | |||||||||
Sbjct: 143 gcggcgctgctccggagcgcgcacccggagtggagccccgccgccgtgcggtcggcgctg 202
Query: 394 atgaccacggcgtac 408
|||||||||||||||
Sbjct: 203 atgaccacggcgtac 217
>gb|BZ626315.1|BZ626315 ih45a09.b1 WGS-SbicolorF (DH5a methyl filtered) Sorghum bicolor
genomic clone ih45a09 5', DNA sequence
Length = 500
Score = 121 bits (61), Expect = 7e-026
Identities = 109/125 (87%)
Strand = Plus / Plus
Query: 280 gagttcaacatcatctccggcacgtccatgtcctgcccgcacgtgagcggcctcgccgcg 339
|||||||||||| | || |||||||||||| |||||||||||||| ||| |||||||||
Sbjct: 171 gagttcaacatcctgtcaggcacgtccatggcctgcccgcacgtgtccgggctcgccgcg 230
Query: 340 ctgctccgccaggcgcacccggagtggagccccgcggcgatcaagtcggcgctcatgacc 399
|||||| |||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct: 231 ctgctcaaggcggcgcacccgacctggagccccgcggcgatcaagtcggcgctgatgacc 290
Query: 400 acggc 404
|||||
Sbjct: 291 acggc 295
>gb|CW229961.1|CW229961 104_671_11207596_116_37270_008 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11207596, DNA
sequence
Length = 750
Score = 121 bits (61), Expect = 7e-026
Identities = 109/125 (87%)
Strand = Plus / Minus
Query: 280 gagttcaacatcatctccggcacgtccatgtcctgcccgcacgtgagcggcctcgccgcg 339
|||||||||||| | || |||||||||||| |||||||||||||| ||| |||||||||
Sbjct: 304 gagttcaacatcctgtcaggcacgtccatggcctgcccgcacgtgtccgggctcgccgcg 245
Query: 340 ctgctccgccaggcgcacccggagtggagccccgcggcgatcaagtcggcgctcatgacc 399
|||||| |||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct: 244 ctgctcaaggcggcgcacccgacctggagccccgcggcgatcaagtcggcgctgatgacc 185
Query: 400 acggc 404
|||||
Sbjct: 184 acggc 180
>gb|CW425473.1|CW425473 fsbb001f136g02f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f136g02, DNA
sequence
Length = 339
Score = 121 bits (61), Expect = 7e-026
Identities = 109/125 (87%)
Strand = Plus / Plus
Query: 280 gagttcaacatcatctccggcacgtccatgtcctgcccgcacgtgagcggcctcgccgcg 339
|||||||||||| | || |||||||||||| |||||||||||||| ||| |||||||||
Sbjct: 97 gagttcaacatcctgtcaggcacgtccatggcctgcccgcacgtgtccgggctcgccgcg 156
Query: 340 ctgctccgccaggcgcacccggagtggagccccgcggcgatcaagtcggcgctcatgacc 399
|||||| |||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct: 157 ctgctcaaggcggcgcacccgacctggagccccgcggcgatcaagtcggcgctgatgacc 216
Query: 400 acggc 404
|||||
Sbjct: 217 acggc 221
>gb|BG649782.1|BG649782 RHIZ2_83_E07.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 455
Score = 121 bits (61), Expect = 7e-026
Identities = 109/125 (87%)
Strand = Plus / Plus
Query: 280 gagttcaacatcatctccggcacgtccatgtcctgcccgcacgtgagcggcctcgccgcg 339
|||||||||||| | || |||||||||||| |||||||||||||| ||| |||||||||
Sbjct: 181 gagttcaacatcctgtcaggcacgtccatggcctgcccgcacgtgtccgggctcgccgcg 240
Query: 340 ctgctccgccaggcgcacccggagtggagccccgcggcgatcaagtcggcgctcatgacc 399
|||||| |||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct: 241 ctgctcaaggcggcgcacccgacctggagccccgcggcgatcaagtcggcgctgatgacc 300
Query: 400 acggc 404
|||||
Sbjct: 301 acggc 305
>gb|CL187783.1|CL187783 104_403_10901130_114_32462_069 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10901130, DNA
sequence
Length = 652
Score = 79.8 bits (40), Expect = 2e-013
Identities = 121/148 (81%)
Strand = Plus / Minus
Query: 175 ccggagatcctcaagcccgacgtcatcgccccgggcgtcaacatactcgcggcgtggacc 234
||||||||||||||||| ||||| | |||||| || ||| |||| || || |||||||||
Sbjct: 149 ccggagatcctcaagccggacgtgaccgcccctggtgtcgacatcctagccgcgtggacc 90
Query: 235 ggcgccgcctcccccaccgacctggacatcgactcgaggcgcgtggagttcaacatcatc 294
|||| ||| || | | || |||| |||| ||||||| ||| ||| ||||||||||
Sbjct: 89 ggcgagaactcgccgtcgcagctcgacagcgacccgaggcgggtgaagtacaacatcatc 30
Query: 295 tccggcacgtccatgtcctgcccgcacg 322
||||||||||||||||| ||||| ||||
Sbjct: 29 tccggcacgtccatgtcgtgccctcacg 2
>gb|BI075351.1|BI075351 IP1_19_E02.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 503
Score = 75.8 bits (38), Expect = 4e-012
Identities = 59/66 (89%)
Strand = Plus / Plus
Query: 280 gagttcaacatcatctccggcacgtccatgtcctgcccgcacgtgagcggcctcgccgcg 339
|||||||||||| | || |||||||||||| |||||||||||||| ||| |||||||||
Sbjct: 430 gagttcaacatcctgtcaggcacgtccatggcctgcccgcacgtgtccgggctcgccgcg 489
Query: 340 ctgctc 345
||||||
Sbjct: 490 ctgctc 495
>gb|CW066203.1|CW066203 104_313_10523562_114_30148 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10523562, DNA
sequence
Length = 365
Score = 69.9 bits (35), Expect = 2e-010
Identities = 44/47 (93%)
Strand = Plus / Plus
Query: 281 agttcaacatcatctccggcacgtccatgtcctgcccgcacgtgagc 327
|||||||||| |||||||||||||||||||| ||||| |||||||||
Sbjct: 319 agttcaacattatctccggcacgtccatgtcgtgccctcacgtgagc 365
>gb|CL153266.1|CL153266 104_337_10780600_114_31367_232 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10780600, DNA
sequence
Length = 566
Score = 67.9 bits (34), Expect = 9e-010
Identities = 40/42 (95%)
Strand = Plus / Plus
Query: 281 agttcaacatcatctccggcacgtccatgtcctgcccgcacg 322
||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 290 agttcaacatcatctccggcacgtccatggcgtgcccgcacg 331
>gb|CW060260.1|CW060260 104_303_10519760_5_30087 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10519760, DNA
sequence
Length = 548
Score = 67.9 bits (34), Expect = 9e-010
Identities = 58/66 (87%)
Strand = Plus / Plus
Query: 175 ccggagatcctcaagcccgacgtcatcgccccgggcgtcaacatactcgcggcgtggacc 234
||||| || |||||||| ||| ||||||| |||||||||||||| ||||| ||||||||
Sbjct: 475 ccggaaattctcaagccggacttcatcgcgccgggcgtcaacatcctcgccgcgtggacg 534
Query: 235 ggcgcc 240
||||||
Sbjct: 535 ggcgcc 540
>gb|CW174026.1|CW174026 104_586_11157172_148_36560_016 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11157172, DNA
sequence
Length = 556
Score = 67.9 bits (34), Expect = 9e-010
Identities = 40/42 (95%)
Strand = Plus / Plus
Query: 281 agttcaacatcatctccggcacgtccatgtcctgcccgcacg 322
||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 98 agttcaacatcatctccggcacgtccatggcgtgcccgcacg 139
>gb|CW199328.1|CW199328 104_624_11183452_148_36855_010 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11183452, DNA
sequence
Length = 630
Score = 67.9 bits (34), Expect = 9e-010
Identities = 40/42 (95%)
Strand = Plus / Plus
Query: 281 agttcaacatcatctccggcacgtccatgtcctgcccgcacg 322
||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 301 agttcaacatcatctccggcacgtccatggcgtgcccgcacg 342
>gb|CW251809.1|CW251809 104_714_11224139_116_35066_038 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11224139, DNA
sequence
Length = 722
Score = 67.9 bits (34), Expect = 9e-010
Identities = 58/66 (87%)
Strand = Plus / Plus
Query: 175 ccggagatcctcaagcccgacgtcatcgccccgggcgtcaacatactcgcggcgtggacc 234
||||| || |||||||| ||| ||||||| |||||||||||||| ||||| ||||||||
Sbjct: 212 ccggaaattctcaagccggacttcatcgcgccgggcgtcaacatcctcgccgcgtggacg 271
Query: 235 ggcgcc 240
||||||
Sbjct: 272 ggcgcc 277
Score = 65.9 bits (33), Expect = 4e-009
Identities = 60/69 (86%)
Strand = Plus / Plus
Query: 279 ggagttcaacatcatctccggcacgtccatgtcctgcccgcacgtgagcggcctcgccgc 338
||||||||||||| | ||||| ||||||||| | |||||||||| |||||| ||||||
Sbjct: 316 ggagttcaacatcctgtccgggacgtccatggcgtgcccgcacgccagcggcgccgccgc 375
Query: 339 gctgctccg 347
|||||||||
Sbjct: 376 gctgctccg 384
>gb|CW376754.1|CW376754 fsbb001f054m13f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f054m13, DNA
sequence
Length = 616
Score = 65.9 bits (33), Expect = 4e-009
Identities = 60/69 (86%)
Strand = Plus / Plus
Query: 279 ggagttcaacatcatctccggcacgtccatgtcctgcccgcacgtgagcggcctcgccgc 338
||||||||||||| | ||||| ||||||||| | |||||||||| |||||| ||||||
Sbjct: 42 ggagttcaacatcctgtccgggacgtccatggcgtgcccgcacgccagcggcgccgccgc 101
Query: 339 gctgctccg 347
|||||||||
Sbjct: 102 gctgctccg 110
>gb|CW381890.1|CW381890 fsbb001f063i04f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f063i04, DNA
sequence
Length = 442
Score = 65.9 bits (33), Expect = 4e-009
Identities = 60/69 (86%)
Strand = Plus / Plus
Query: 279 ggagttcaacatcatctccggcacgtccatgtcctgcccgcacgtgagcggcctcgccgc 338
||||||||||||| | ||||| ||||||||| | |||||||||| |||||| ||||||
Sbjct: 102 ggagttcaacatcctgtccgggacgtccatggcgtgcccgcacgccagcggcgccgccgc 161
Query: 339 gctgctccg 347
|||||||||
Sbjct: 162 gctgctccg 170
Score = 65.9 bits (33), Expect = 4e-009
Identities = 51/57 (89%)
Strand = Plus / Plus
Query: 184 ctcaagcccgacgtcatcgccccgggcgtcaacatactcgcggcgtggaccggcgcc 240
|||||||| ||| ||||||| |||||||||||||| ||||| |||||||| ||||||
Sbjct: 7 ctcaagccggacttcatcgcgccgggcgtcaacatcctcgccgcgtggacgggcgcc 63
Score = 40.1 bits (20), Expect = 0.21
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 505 gccctcgacccaaggctggtgtacgacgccgg 536
||||| ||||| |||||||||||||||||||
Sbjct: 331 gccctggaccccgggctggtgtacgacgccgg 362
>gb|CW270306.1|CW270306 104_741_11402339_116_35324_034 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11402339, DNA
sequence
Length = 587
Score = 63.9 bits (32), Expect = 1e-008
Identities = 47/52 (90%)
Strand = Plus / Plus
Query: 272 ggcgcgtggagttcaacatcatctccggcacgtccatgtcctgcccgcacgt 323
||||||||| ||||||||| | ||||||||||||||||| |||||||||||
Sbjct: 373 ggcgcgtggcgttcaacatgctgtccggcacgtccatgtcgtgcccgcacgt 424
Score = 48.1 bits (24), Expect = 8e-004
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 355 cacccggagtggagccccgcggcgatcaagtcggcgctcatgac 398
|||||||| ||||||||| | |||||||||||||| |||||||
Sbjct: 456 cacccggactggagcccctccgcgatcaagtcggccatcatgac 499
>gb|CW092898.1|CW092898 104_455_10999447_116_33049_020 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10999447, DNA
sequence
Length = 534
Score = 61.9 bits (31), Expect = 6e-008
Identities = 88/107 (82%)
Strand = Plus / Plus
Query: 295 tccggcacgtccatgtcctgcccgcacgtgagcggcctcgccgcgctgctccgccaggcg 354
||||||||||||||||| ||||||||||| |||| ||| || || |||||| ||
Sbjct: 28 tccggcacgtccatgtcgtgcccgcacgtctccggcgtcgtcggcctcctccgcacggtc 87
Query: 355 cacccggagtggagccccgcggcgatcaagtcggcgctcatgaccac 401
|||||| | ||||||||||| || ||||||||||| ||||||||||
Sbjct: 88 cacccgcaatggagccccgccgccatcaagtcggccatcatgaccac 134
>gb|BG048637.1|BG048637 OV1_21_B08.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 475
Score = 61.9 bits (31), Expect = 6e-008
Identities = 88/107 (82%)
Strand = Plus / Plus
Query: 295 tccggcacgtccatgtcctgcccgcacgtgagcggcctcgccgcgctgctccgccaggcg 354
||||||||||||||||| ||||||||||| |||| ||| || || |||||| ||
Sbjct: 294 tccggcacgtccatgtcgtgcccgcacgtctccggcgtcgtcggcctcctccgcacggtc 353
Query: 355 cacccggagtggagccccgcggcgatcaagtcggcgctcatgaccac 401
|||||| | ||||||||||| || ||||||||||| ||||||||||
Sbjct: 354 cacccgcaatggagccccgccgccatcaagtcggccatcatgaccac 400
>gb|CL164583.1|CL164583 104_358_10808008_114_31814_376 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10808008, DNA
sequence
Length = 727
Score = 60.0 bits (30), Expect = 2e-007
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 355 cacccggagtggagccccgcggcgatcaagtcggcgctcatgaccacggcgtac 408
|||||||| |||||||||||| ||||||||| ||||| |||||||| ||||||
Sbjct: 544 cacccggactggagccccgcgaagatcaagtccgcgctgatgaccaccgcgtac 597
Score = 54.0 bits (27), Expect = 1e-005
Identities = 57/67 (85%)
Strand = Plus / Plus
Query: 177 ggagatcctcaagcccgacgtcatcgccccgggcgtcaacatactcgcggcgtggaccgg 236
||||||||||||||| ||||||||||| || ||||| ||||| | ||||| |||| |||
Sbjct: 366 ggagatcctcaagccggacgtcatcgcgcccggcgtgaacatcttggcggcatggagcgg 425
Query: 237 cgccgcc 243
|| ||||
Sbjct: 426 cgacgcc 432
>gb|CL189532.1|CL189532 104_406_10902361_116_32473_001 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10902361, DNA
sequence
Length = 264
Score = 60.0 bits (30), Expect = 2e-007
Identities = 51/58 (87%)
Strand = Plus / Minus
Query: 354 gcacccggagtggagccccgcggcgatcaagtcggcgctcatgaccacggcgtacaac 411
|||||||||||||||||| || || ||| ||||||||| ||||| ||||||||||||
Sbjct: 264 gcacccggagtggagcccggcagccatccggtcggcgctgatgacgacggcgtacaac 207
>gb|CW227593.1|CW227593 104_667_11205889_116_37239_013 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11205889, DNA
sequence
Length = 539
Score = 60.0 bits (30), Expect = 2e-007
Identities = 48/54 (88%)
Strand = Plus / Minus
Query: 355 cacccggagtggagccccgcggcgatcaagtcggcgctcatgaccacggcgtac 408
|||||||| |||||||||||| ||||||||| ||||| |||||||| ||||||
Sbjct: 535 cacccggactggagccccgcgaagatcaagtccgcgctgatgaccaccgcgtac 482
>gb|BG053293.1|BG053293 RHIZ2_25_F03.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 379
Score = 60.0 bits (30), Expect = 2e-007
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 355 cacccggagtggagccccgcggcgatcaagtcggcgctcatgaccacggcgtac 408
|||||||| |||||||||||| ||||||||| ||||| |||||||| ||||||
Sbjct: 290 cacccggactggagccccgcgaagatcaagtccgcgctgatgaccaccgcgtac 343
Score = 54.0 bits (27), Expect = 1e-005
Identities = 57/67 (85%)
Strand = Plus / Plus
Query: 177 ggagatcctcaagcccgacgtcatcgccccgggcgtcaacatactcgcggcgtggaccgg 236
||||||||||||||| ||||||||||| || ||||| ||||| | ||||| |||| |||
Sbjct: 112 ggagatcctcaagccggacgtcatcgcgcccggcgtgaacatcttggcggcatggagcgg 171
Query: 237 cgccgcc 243
|| ||||
Sbjct: 172 cgacgcc 178
>gb|CW205174.1|CW205174 104_633_11186932_116_36928_008 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11186932, DNA
sequence
Length = 657
Score = 58.0 bits (29), Expect = 9e-007
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 283 ttcaacatcatctccggcacgtccatgtc 311
|||||||||||||||||||||||||||||
Sbjct: 271 ttcaacatcatctccggcacgtccatgtc 299
>gb|CW225261.1|CW225261 104_662_11204256_148_37205_084 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11204256, DNA
sequence
Length = 704
Score = 58.0 bits (29), Expect = 9e-007
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 283 ttcaacatcatctccggcacgtccatgtc 311
|||||||||||||||||||||||||||||
Sbjct: 421 ttcaacatcatctccggcacgtccatgtc 449
>gb|CW211871.1|CW211871 104_642_11190728_116_37013_018 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11190728, DNA
sequence
Length = 634
Score = 54.0 bits (27), Expect = 1e-005
Identities = 57/67 (85%)
Strand = Plus / Minus
Query: 177 ggagatcctcaagcccgacgtcatcgccccgggcgtcaacatactcgcggcgtggaccgg 236
||||||||||||||| ||||||||||| || ||||| ||||| | ||||| |||| |||
Sbjct: 164 ggagatcctcaagccggacgtcatcgcgcccggcgtgaacatcttggcggcatggagcgg 105
Query: 237 cgccgcc 243
|| ||||
Sbjct: 104 cgacgcc 98
Score = 48.1 bits (24), Expect = 8e-004
Identities = 45/52 (86%)
Strand = Plus / Minus
Query: 272 ggcgcgtggagttcaacatcatctccggcacgtccatgtcctgcccgcacgt 323
||||||| | |||||||||| | || || ||||||||||| |||||||||||
Sbjct: 69 ggcgcgtcgggttcaacatcctgtcggggacgtccatgtcgtgcccgcacgt 18
>gb|CW241952.1|CW241952 104_701_11219059_116_37551_074 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11219059, DNA
sequence
Length = 683
Score = 54.0 bits (27), Expect = 1e-005
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 363 gtggagccccgcggcgatcaagtcggcgctcatgaccacggcg 405
||||||||||||||||||| ||||||| ||||||| ||||||
Sbjct: 564 gtggagccccgcggcgatccggtcggcgatcatgacgacggcg 606
>gb|CW241953.1|CW241953 104_701_11219059_148_37552_074 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11219059, DNA
sequence
Length = 565
Score = 54.0 bits (27), Expect = 1e-005
Identities = 39/43 (90%)
Strand = Plus / Minus
Query: 363 gtggagccccgcggcgatcaagtcggcgctcatgaccacggcg 405
||||||||||||||||||| ||||||| ||||||| ||||||
Sbjct: 330 gtggagccccgcggcgatccggtcggcgatcatgacgacggcg 288
>gb|CW366979.1|CW366979 fsbb001f040d13f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f040d13, DNA
sequence
Length = 652
Score = 54.0 bits (27), Expect = 1e-005
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 363 gtggagccccgcggcgatcaagtcggcgctcatgaccacggcg 405
||||||||||||||||||| ||||||| ||||||| ||||||
Sbjct: 144 gtggagccccgcggcgatccggtcggcgatcatgacgacggcg 186
>gb|CW425847.1|CW425847 fsbb001f136p13f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f136p13, DNA
sequence
Length = 306
Score = 54.0 bits (27), Expect = 1e-005
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 363 gtggagccccgcggcgatcaagtcggcgctcatgaccacggcg 405
||||||||||||||||||| ||||||| ||||||| ||||||
Sbjct: 250 gtggagccccgcggcgatccggtcggcgatcatgacgacggcg 292
>gb|CW494040.1|CW494040 fsbb001f285b17f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f285b17, DNA
sequence
Length = 436
Score = 54.0 bits (27), Expect = 1e-005
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 288 catcatctccggcacgtccatgtcctgcccgcacg 322
|||||||||||||||||||||| | ||||||||||
Sbjct: 1 catcatctccggcacgtccatggcgtgcccgcacg 35
>gb|BG560568.1|BG560568 RHIZ2_59_A07.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 467
Score = 54.0 bits (27), Expect = 1e-005
Identities = 57/67 (85%)
Strand = Plus / Plus
Query: 177 ggagatcctcaagcccgacgtcatcgccccgggcgtcaacatactcgcggcgtggaccgg 236
||||||||||||||| ||||||||||| || ||||| ||||| | ||||| |||| |||
Sbjct: 399 ggagatcctcaagccggacgtcatcgcgcccggcgtgaacatcttggcggcatggagcgg 458
Query: 237 cgccgcc 243
|| ||||
Sbjct: 459 cgacgcc 465
>gb|CD426311.1|CD426311 SA1_19_G04.g1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_19_G04_A002 5', mRNA sequence
Length = 651
Score = 54.0 bits (27), Expect = 1e-005
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 363 gtggagccccgcggcgatcaagtcggcgctcatgaccacggcg 405
||||||||||||||||||| ||||||| ||||||| ||||||
Sbjct: 93 gtggagccccgcggcgatccggtcggcgatcatgacgacggcg 135
>gb|CL174129.1|CL174129 104_378_10891366_116_31771_118 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10891366, DNA
sequence
Length = 672
Score = 52.0 bits (26), Expect = 5e-005
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 294 ctccggcacgtccatgtcctgcccgcacgt 323
|||||||||||||||||| |||||||||||
Sbjct: 190 ctccggcacgtccatgtcgtgcccgcacgt 161
>gb|CW059282.1|CW059282 104_302_10519227_115_30168 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10519227, DNA
sequence
Length = 390
Score = 52.0 bits (26), Expect = 5e-005
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 294 ctccggcacgtccatgtcctgcccgcacgt 323
|||||||||||||||||| |||||||||||
Sbjct: 133 ctccggcacgtccatgtcgtgcccgcacgt 162
>gb|CW391618.1|CW391618 fsbb001f077n14k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f077n14, DNA
sequence
Length = 368
Score = 52.0 bits (26), Expect = 5e-005
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 294 ctccggcacgtccatgtcctgcccgcacgt 323
|||||||||||||||||| |||||||||||
Sbjct: 246 ctccggcacgtccatgtcgtgcccgcacgt 275
>gb|BI099312.1|BI099312 IP1_37_E02.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 456
Score = 52.0 bits (26), Expect = 5e-005
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 177 ggagatcctcaagcccgacgtcatcgccccgggcgtcaacat 218
||||||||||||||| ||||||||||| || ||||| |||||
Sbjct: 400 ggagatcctcaagccggacgtcatcgcgcccggcgtgaacat 441
>gb|CB925652.1|CB925652 ABA1_22_H04.g1_A012 Abscisic acid-treated seedlings Sorghum bicolor
cDNA clone ABA1_22_H04_A012 5', mRNA sequence
Length = 639
Score = 52.0 bits (26), Expect = 5e-005
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 294 ctccggcacgtccatgtcctgcccgcacgt 323
|||||||||||||||||| |||||||||||
Sbjct: 298 ctccggcacgtccatgtcgtgcccgcacgt 327
Score = 42.1 bits (21), Expect = 0.052
Identities = 42/49 (85%)
Strand = Plus / Plus
Query: 179 agatcctcaagcccgacgtcatcgccccgggcgtcaacatactcgcggc 227
||||||||||||||||||| | |||||| || || ||||| || |||||
Sbjct: 183 agatcctcaagcccgacgtgaccgcccccggagtgaacatcctggcggc 231
Score = 40.1 bits (20), Expect = 0.21
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 518 ggctggtgtacgacgccggc 537
||||||||||||||||||||
Sbjct: 522 ggctggtgtacgacgccggc 541
>gb|BH245569.1|BH245569 pSB0925 S. bicolor BTx623 PstI-digested total genomic DNA library
Sorghum bicolor genomic clone pSB0925, DNA sequence
Length = 724
Score = 50.1 bits (25), Expect = 2e-004
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 285 caacatcatctccggcacgtccatgtcctgcccgcacgtgagcgg 329
|||||||||||||||||| |||||| | ||||| |||| ||||||
Sbjct: 309 caacatcatctccggcacatccatggcgtgcccacacgcgagcgg 353
>gb|CL163631.1|CL163631 104_357_10807284_114_31812_036 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10807284, DNA
sequence
Length = 685
Score = 50.1 bits (25), Expect = 2e-004
Identities = 106/133 (79%)
Strand = Plus / Plus
Query: 295 tccggcacgtccatgtcctgcccgcacgtgagcggcctcgccgcgctgctccgccaggcg 354
|||||||| |||||||||||||| ||||| |||| || |||||| ||| ||||
Sbjct: 218 tccggcacctccatgtcctgccctcacgtctccggcatcatcgcgctcctcaaggcggcg 277
Query: 355 cacccggagtggagccccgcggcgatcaagtcggcgctcatgaccacggcgtacaacctg 414
| |||||||||||||||||| ||||| || ||| |||||||||||||| || || |
Sbjct: 278 cgcccggagtggagccccgccgcgatgcgctccgcgatcatgaccacggcgcgcacccag 337
Query: 415 gacaactccgggg 427
|||||||| ||||
Sbjct: 338 gacaactcggggg 350
>gb|CW033319.1|CW033319 104_262_10501889_114_30361 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10501889, DNA
sequence
Length = 459
Score = 50.1 bits (25), Expect = 2e-004
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 285 caacatcatctccggcacgtccatgtcctgcccgcacgtgagcgg 329
|||||||||||||||||| |||||| | ||||| |||| ||||||
Sbjct: 122 caacatcatctccggcacatccatggcgtgcccacacgcgagcgg 166
>gb|CW057101.1|CW057101 104_299_10518040_115_30171 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10518040, DNA
sequence
Length = 573
Score = 50.1 bits (25), Expect = 2e-004
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 285 caacatcatctccggcacgtccatgtcctgcccgcacgtgagcgg 329
|||||||||||||||||| |||||| | ||||| |||| ||||||
Sbjct: 122 caacatcatctccggcacatccatggcgtgcccacacgcgagcgg 166
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 162,206
Number of Sequences: 832831
Number of extensions: 162206
Number of successful extensions: 47779
Number of sequences better than 0.5: 101
Number of HSP's better than 0.5 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 47527
Number of HSP's gapped (non-prelim): 241
length of query: 545
length of database: 491,359,669
effective HSP length: 19
effective length of query: 526
effective length of database: 475,535,880
effective search space: 250131872880
effective search space used: 250131872880
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)