BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 5705822.3.1
(888 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BG101750.1|BG101750 EM1_5_G11.b1_A002 Embryo 1 (EM1) Sor... 775 0.0
gb|BG357247.1|BG357247 OV2_11_F03.b1_A002 Ovary 2 (OV2) Sor... 561 e-158
gb|BE594661.1|BE594661 PI1_36_A08.b1_A002 Pathogen induced ... 525 e-147
gb|CD209743.1|CD209743 HS1_54_G03.g1_A012 Heat-shocked seed... 507 e-142
gb|BE366784.1|BE366784 PI1_41_B06.b1_A002 Pathogen induced ... 402 e-110
gb|CD205197.1|CD205197 HS1_12_H06.g1_A012 Heat-shocked seed... 343 2e-092
gb|CW295001.1|CW295001 104_776_11460700_116_35619_014 Sorgh... 200 2e-049
gb|CW098879.1|CW098879 104_465_11003248_116_34373_054 Sorgh... 168 6e-040
gb|CW192313.1|CW192313 104_614_11178957_116_36947_085 Sorgh... 165 9e-039
gb|CW215266.1|CW215266 104_647_11194449_148_37166_039 Sorgh... 165 9e-039
gb|CW295002.1|CW295002 104_776_11460700_148_35615_014 Sorgh... 117 2e-024
gb|CW098880.1|CW098880 104_465_11003248_148_34369_054 Sorgh... 101 1e-019
gb|CW192314.1|CW192314 104_614_11178957_148_36948_085 Sorgh... 101 1e-019
gb|CW215265.1|CW215265 104_647_11194449_116_37165_039 Sorgh... 101 1e-019
gb|CL153647.1|CL153647 104_338_10780858_116_31370_106 Sorgh... 94 3e-017
gb|CL153754.1|CL153754 104_338_10780937_116_31370_185 Sorgh... 94 3e-017
gb|CL167350.1|CL167350 104_364_10810017_114_31802_081 Sorgh... 94 3e-017
gb|CW464776.1|CW464776 fsbb001f215d09f0 Sorghum methylation... 94 3e-017
gb|CW112914.1|CW112914 104_487_11105157_116_34553_095 Sorgh... 78 2e-012
gb|BI643686.1|BI643686 EM1_19_B03.b1_A002 Embryo 1 (EM1) So... 74 2e-011
gb|CL167351.1|CL167351 104_364_10810017_116_31803_081 Sorgh... 70 4e-010
gb|BM327984.1|BM327984 PIC1_19_G12.g1_A002 Pathogen-infecte... 66 6e-009
gb|CD209445.1|CD209445 HS1_42_F06.g1_A012 Heat-shocked seed... 60 4e-007
gb|BG465084.1|BG465084 EM1_33_B07.b1_A002 Embryo 1 (EM1) So... 58 1e-006
>gb|BG101750.1|BG101750 EM1_5_G11.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 466
Score = 775 bits (391), Expect = 0.0
Identities = 443/459 (96%), Gaps = 1/459 (0%)
Strand = Plus / Plus
Query: 191 ggatacagtgaaggggctcatcagctctggacggctggaattaataaatggtggcatgtg 250
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 ggatacggtgaaagggctcatcagctctggacggctggaattaataaatggtggcatgtg 67
Query: 251 catgcacgatgaggcggctgtacactatattgacatgatcgatcagactacacttggaca 310
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct: 68 catgcatgatgaggcggctgtacactacattgacatgatcgatcagactacacttgggca 127
Query: 311 caagtacatcaaggaggagtttggccagatcccacggattggctggcagattgatccgtt 370
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 caggtacatcaaggaggagtttggccagatcccacggattggctggcagattgatccgtt 187
Query: 371 tgggcactctgcggttcaggcttaccttcttggcgcagaagtaggattcgatgctttcta 430
|||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct: 188 tgggcactctgcagttcaggcttaccttcttggtgcagaagtaggatttgatgctttcta 247
Query: 431 tttcttccggattgattaccaagaccgtgatacacggaaaggaacaaaagaactcgaggt 490
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct: 248 tttcttccggattgattaccaagaccgtgatacacggaagggaacaaaagaacttgaggt 307
Query: 491 tgtatggaggggctccaagaccttgggctcatcggctgatatctttgctggcatctttcc 550
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 308 tgtatggaggggctccaagaccttgggctcatcagctgatatctttgctggcatctttcc 367
Query: 551 aaaaaactatgaaccacctcctggtgatttttattttgaagttgatgataattcccctgt 610
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 368 aaaaaactacgaaccacctcctggtgaattttattttgaagttgatgataattcccctgt 427
Query: 611 tgtccaggatgatcccctt-cttttcgattataatgttg 648
||||||| ||||||||||| |||||||||||||||||||
Sbjct: 428 tgtccagcatgatccccttccttttcgattataatgttg 466
>gb|BG357247.1|BG357247 OV2_11_F03.b1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 450
Score = 561 bits (283), Expect = e-158
Identities = 322/335 (96%)
Strand = Plus / Plus
Query: 550 caaaaaactatgaaccacctcctggtgatttttattttgaagttgatgataattcccctg 609
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 1 caaaaaactacgaaccacctcctggtgaattttattttgaagttgatgataattcccctg 60
Query: 610 ttgtccaggatgatccccttcttttcgattataatgttgaagaacgagtaaatgattttg 669
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 61 ttgtccaggatgatccccttcttttcgattataatgttgaggaacgagtaaatgattttg 120
Query: 670 ttgctgcagctgtagcacaggcaaatatcacgaggacaaatcatatcatgtttacaatgg 729
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct: 121 ttgctgcagctgtagcacaggcaaatatcacgaggacaaaccatatcatgtttacgatgg 180
Query: 730 gaacagacttcaaataccaatacgcagagagttggttcggaaatatggacaaactaattc 789
|||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct: 181 gaacagacttcaaataccaatatgcagagagttggttcagaaatatggacaaactaattc 240
Query: 790 actatgtgaacaaggatggccgtatccatgctctttattccacaccttccatttataccg 849
||||||||||||||||||||||| || |||||||||||||||||||||| ||||||||||
Sbjct: 241 actatgtgaacaaggatggccgtgtcaatgctctttattccacaccttcaatttataccg 300
Query: 850 atgcaaaatatgctgcaaatgagcaggggcctctc 884
|||| ||||||||||||||||||| | ||||||||
Sbjct: 301 atgcgaaatatgctgcaaatgagctgtggcctctc 335
>gb|BE594661.1|BE594661 PI1_36_A08.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 361
Score = 525 bits (265), Expect = e-147
Identities = 289/297 (97%)
Strand = Plus / Plus
Query: 1 acgacgtcggatggctcaagaccgtagaccagtactacgtcggatccaacaactccatcc 60
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct: 65 acgacgtcggctggctcaagaccgtggaccagtactacgtcggatccaacaactcaatcc 124
Query: 61 agggggcatgcgtgcagaacgtgctggattcgctcatcccggcgcttctcaaggacgaga 120
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 125 agggggcatgcgtgcagaacgtgctggattcgctcatcccggcgctgctcaaggacgaga 184
Query: 121 accgaaagttcatctatgttgagcaggcattcttccaaagatggtggaggaaccagaatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 accgaaagttcatctatgttgagcaggcattcttccaaagatggtggaggaaccagaatg 244
Query: 181 acatgatcaaggatacagtgaaggggctcatcagctctggacggctggaattaataaatg 240
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 245 acatgatcaaggatacggtgaaagggctcatcagctctggacggctggaattaataaatg 304
Query: 241 gtggcatgtgcatgcacgatgaggcggctgtacactatattgacatgatcgatcaga 297
|||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct: 305 gtggcatgtgcatgcatgatgaggcggctgtacactacattgacatgatcgatcaga 361
>gb|CD209743.1|CD209743 HS1_54_G03.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_54_G03_A012 5', mRNA sequence
Length = 534
Score = 507 bits (256), Expect = e-142
Identities = 298/312 (95%)
Strand = Plus / Plus
Query: 1 acgacgtcggatggctcaagaccgtagaccagtactacgtcggatccaacaactccatcc 60
|||||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct: 219 acgacgtcggctggctcaagaccgcggaccagtactacgtcggatccaacaactcaatcc 278
Query: 61 agggggcatgcgtgcagaacgtgctggattcgctcatcccggcgcttctcaaggacgaga 120
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 279 agggggcatgcgtgcagaacgtgctggattcgctcatcccggcgctgcccaaggacgaga 338
Query: 121 accgaaagttcatctatgttgagcaggcattcttccaaagatggtggaggaaccagaatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 accgaaagttcatctatgttgagcaggcattcttccaaagatggtggaggaaccagaatg 398
Query: 181 acatgatcaaggatacagtgaaggggctcatcagctctggacggctggaattaataaatg 240
|||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||||||
Sbjct: 399 acatgatcaaggatacggtgaaagggctcatcaactctggacggctggaattaataaatg 458
Query: 241 gtggcatgtgcatgcacgatgaggcggctgtacactatattgacatgatcgatcagacta 300
|||||||||||||||| ||||| | |||||||||||| ||||||||||||||||||||||
Sbjct: 459 gtggcatgtgcatgcatgatgaaggggctgtacactacattgacatgatcgatcagacta 518
Query: 301 cacttggacaca 312
||||||| ||||
Sbjct: 519 cacttgggcaca 530
>gb|BE366784.1|BE366784 PI1_41_B06.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 261
Score = 402 bits (203), Expect = e-110
Identities = 239/251 (95%)
Strand = Plus / Plus
Query: 617 ggatgatccccttcttttcgattataatgttgaagaacgagtaaatgattttgttgctgc 676
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 11 ggatgatccccttcttttcgattataatgttgaggaacgagtaaatgattttgttgctgc 70
Query: 677 agctgtagcacaggcaaatatcacgaggacaaatcatatcatgtttacaatgggaacaga 736
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct: 71 agctgtagcacaggcaaatatcacgaggacaaaccatatcatgtttacgatgggaacaga 130
Query: 737 cttcaaataccaatacgcagagagttggttcggaaatatggacaaactaattcactatgt 796
||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 131 cttcaaataccaatatgcagagagttggttcacaaatatggacaaactaattcactatgt 190
Query: 797 gaacaaggatggccgtatccatgctctttattccacaccttccatttataccgatgcaaa 856
|||||||||||| ||| || ||||||||||||||||||||| |||||||||||||| ||
Sbjct: 191 gaacaaggatgggcgtgtcaatgctctttattccacaccttgaatttataccgatgcgaa 250
Query: 857 atatgctgcaa 867
|||||||||||
Sbjct: 251 atatgctgcaa 261
>gb|CD205197.1|CD205197 HS1_12_H06.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_12_H06_A012 5', mRNA sequence
Length = 710
Score = 343 bits (173), Expect = 2e-092
Identities = 188/193 (97%)
Strand = Plus / Plus
Query: 1 acgacgtcggatggctcaagaccgtagaccagtactacgtcggatccaacaactccatcc 60
||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct: 285 acgacgtcgactggctcaagaccgtggaccagtactacgtcggatccaacaactcaatcc 344
Query: 61 agggggcatgcgtgcagaacgtgctggattcgctcatcccggcgcttctcaaggacgaga 120
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 345 agggggcatgcgtgcagaacgtgctggattcgctcatcccggcgctgctcaaggacgaga 404
Query: 121 accgaaagttcatctatgttgagcaggcattcttccaaagatggtggaggaaccagaatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 accgaaagttcatctatgttgagcaggcattcttccaaagatggtggaggaaccagaatg 464
Query: 181 acatgatcaagga 193
|||||||||||||
Sbjct: 465 acatgatcaagga 477
>gb|CW295001.1|CW295001 104_776_11460700_116_35619_014 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11460700, DNA
sequence
Length = 625
Score = 200 bits (101), Expect = 2e-049
Identities = 113/117 (96%)
Strand = Plus / Plus
Query: 688 aggcaaatatcacgaggacaaatcatatcatgtttacaatgggaacagacttcaaatacc 747
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct: 23 aggcaaatatcacgaggacaaaccatatcatgtttacgatgggaacagacttcaaatacc 82
Query: 748 aatacgcagagagttggttcggaaatatggacaaactaattcactatgtgaacaagg 804
|||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 83 aatatgcagagagttggttcagaaatatggacaaactaattcactatgtgaacaagg 139
Score = 101 bits (51), Expect = 1e-019
Identities = 76/83 (91%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 802 aggatggccgtatccatgctctttattccacaccttccatttataccgatgcaaaatatg 861
||||||||||| || ||||||||||||| |||||||| |||||||||||||| |||||||
Sbjct: 532 aggatggccgtgtcaatgctctttattc-acaccttcaatttataccgatgcgaaatatg 590
Query: 862 ctgcaaatgagcaggggcctctc 884
|||||||||||| | ||||||||
Sbjct: 591 ctgcaaatgagctgtggcctctc 613
>gb|CW098879.1|CW098879 104_465_11003248_116_34373_054 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11003248, DNA
sequence
Length = 640
Score = 168 bits (85), Expect = 6e-040
Identities = 91/93 (97%)
Strand = Plus / Minus
Query: 143 gcaggcattcttccaaagatggtggaggaaccagaatgacatgatcaaggatacagtgaa 202
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 178 gcaggcattcttccaaagatggtggaggaaccagaatgacatgatcaaggatacggtgaa 119
Query: 203 ggggctcatcagctctggacggctggaattaat 235
||||||||||||||||||||||||||||||||
Sbjct: 118 agggctcatcagctctggacggctggaattaat 86
Score = 165 bits (83), Expect = 9e-039
Identities = 86/87 (98%)
Strand = Plus / Minus
Query: 61 agggggcatgcgtgcagaacgtgctggattcgctcatcccggcgcttctcaaggacgaga 120
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 561 agggggcatgcgtgcagaacgtgctggattcgctcatcccggcgctgctcaaggacgaga 502
Query: 121 accgaaagttcatctatgttgagcagg 147
|||||||||||||||||||||||||||
Sbjct: 501 accgaaagttcatctatgttgagcagg 475
>gb|CW192313.1|CW192313 104_614_11178957_116_36947_085 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11178957, DNA
sequence
Length = 616
Score = 165 bits (83), Expect = 9e-039
Identities = 86/87 (98%)
Strand = Plus / Minus
Query: 61 agggggcatgcgtgcagaacgtgctggattcgctcatcccggcgcttctcaaggacgaga 120
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 132 agggggcatgcgtgcagaacgtgctggattcgctcatcccggcgctgctcaaggacgaga 73
Query: 121 accgaaagttcatctatgttgagcagg 147
|||||||||||||||||||||||||||
Sbjct: 72 accgaaagttcatctatgttgagcagg 46
Score = 101 bits (51), Expect = 1e-019
Identities = 60/63 (95%)
Strand = Plus / Minus
Query: 1 acgacgtcggatggctcaagaccgtagaccagtactacgtcggatccaacaactccatcc 60
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct: 434 acgacgtcggctggctcaagaccgtggaccagtactacgtcggatccaacaactcaatcc 375
Query: 61 agg 63
|||
Sbjct: 374 agg 372
>gb|CW215266.1|CW215266 104_647_11194449_148_37166_039 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11194449, DNA
sequence
Length = 688
Score = 165 bits (83), Expect = 9e-039
Identities = 86/87 (98%)
Strand = Plus / Minus
Query: 61 agggggcatgcgtgcagaacgtgctggattcgctcatcccggcgcttctcaaggacgaga 120
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 338 agggggcatgcgtgcagaacgtgctggattcgctcatcccggcgctgctcaaggacgaga 279
Query: 121 accgaaagttcatctatgttgagcagg 147
|||||||||||||||||||||||||||
Sbjct: 278 accgaaagttcatctatgttgagcagg 252
Score = 101 bits (51), Expect = 1e-019
Identities = 60/63 (95%)
Strand = Plus / Minus
Query: 1 acgacgtcggatggctcaagaccgtagaccagtactacgtcggatccaacaactccatcc 60
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct: 640 acgacgtcggctggctcaagaccgtggaccagtactacgtcggatccaacaactcaatcc 581
Query: 61 agg 63
|||
Sbjct: 580 agg 578
>gb|CW295002.1|CW295002 104_776_11460700_148_35615_014 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11460700, DNA
sequence
Length = 649
Score = 117 bits (59), Expect = 2e-024
Identities = 77/83 (92%)
Strand = Plus / Minus
Query: 802 aggatggccgtatccatgctctttattccacaccttccatttataccgatgcaaaatatg 861
||||||||||| || |||||||||||||||||||||| |||||||||||||| |||||||
Sbjct: 535 aggatggccgtgtcaatgctctttattccacaccttcaatttataccgatgcgaaatatg 476
Query: 862 ctgcaaatgagcaggggcctctc 884
|||||||||||| | ||||||||
Sbjct: 475 ctgcaaatgagctgtggcctctc 453
>gb|CW098880.1|CW098880 104_465_11003248_148_34369_054 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11003248, DNA
sequence
Length = 644
Score = 101 bits (51), Expect = 1e-019
Identities = 60/63 (95%)
Strand = Plus / Plus
Query: 1 acgacgtcggatggctcaagaccgtagaccagtactacgtcggatccaacaactccatcc 60
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct: 381 acgacgtcggctggctcaagaccgtggaccagtactacgtcggatccaacaactcaatcc 440
Query: 61 agg 63
|||
Sbjct: 441 agg 443
>gb|CW192314.1|CW192314 104_614_11178957_148_36948_085 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11178957, DNA
sequence
Length = 727
Score = 101 bits (51), Expect = 1e-019
Identities = 60/63 (95%)
Strand = Plus / Plus
Query: 1 acgacgtcggatggctcaagaccgtagaccagtactacgtcggatccaacaactccatcc 60
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct: 437 acgacgtcggctggctcaagaccgtggaccagtactacgtcggatccaacaactcaatcc 496
Query: 61 agg 63
|||
Sbjct: 497 agg 499
>gb|CW215265.1|CW215265 104_647_11194449_116_37165_039 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11194449, DNA
sequence
Length = 581
Score = 101 bits (51), Expect = 1e-019
Identities = 60/63 (95%)
Strand = Plus / Plus
Query: 1 acgacgtcggatggctcaagaccgtagaccagtactacgtcggatccaacaactccatcc 60
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct: 477 acgacgtcggctggctcaagaccgtggaccagtactacgtcggatccaacaactcaatcc 536
Query: 61 agg 63
|||
Sbjct: 537 agg 539
>gb|CL153647.1|CL153647 104_338_10780858_116_31370_106 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10780858, DNA
sequence
Length = 684
Score = 93.7 bits (47), Expect = 3e-017
Identities = 59/63 (93%)
Strand = Plus / Minus
Query: 1 acgacgtcggatggctcaagaccgtagaccagtactacgtcggatccaacaactccatcc 60
|||||||||| |||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct: 435 acgacgtcgggtggctcaagaccgtcgaccagtactacgtcggatccaacaacagcatcc 376
Query: 61 agg 63
|||
Sbjct: 375 agg 373
>gb|CL153754.1|CL153754 104_338_10780937_116_31370_185 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10780937, DNA
sequence
Length = 735
Score = 93.7 bits (47), Expect = 3e-017
Identities = 59/63 (93%)
Strand = Plus / Plus
Query: 1 acgacgtcggatggctcaagaccgtagaccagtactacgtcggatccaacaactccatcc 60
|||||||||| |||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct: 584 acgacgtcgggtggctcaagaccgtcgaccagtactacgtcggatccaacaacagcatcc 643
Query: 61 agg 63
|||
Sbjct: 644 agg 646
>gb|CL167350.1|CL167350 104_364_10810017_114_31802_081 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10810017, DNA
sequence
Length = 674
Score = 93.7 bits (47), Expect = 3e-017
Identities = 59/63 (93%)
Strand = Plus / Plus
Query: 1 acgacgtcggatggctcaagaccgtagaccagtactacgtcggatccaacaactccatcc 60
|||||||||| |||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct: 499 acgacgtcgggtggctcaagaccgtcgaccagtactacgtcggatccaacaacagcatcc 558
Query: 61 agg 63
|||
Sbjct: 559 agg 561
>gb|CW464776.1|CW464776 fsbb001f215d09f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f215d09, DNA
sequence
Length = 551
Score = 93.7 bits (47), Expect = 3e-017
Identities = 59/63 (93%)
Strand = Plus / Minus
Query: 1 acgacgtcggatggctcaagaccgtagaccagtactacgtcggatccaacaactccatcc 60
|||||||||| |||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct: 410 acgacgtcgggtggctcaagaccgtcgaccagtactacgtcggatccaacaacagcatcc 351
Query: 61 agg 63
|||
Sbjct: 350 agg 348
>gb|CW112914.1|CW112914 104_487_11105157_116_34553_095 Sorghum methylation filtered
library (LibID: 104) Sorghum bicolor genomic clone
11105157, DNA sequence
Length = 609
Score = 77.8 bits (39), Expect = 2e-012
Identities = 57/63 (90%)
Strand = Plus / Minus
Query: 1 acgacgtcggatggctcaagaccgtagaccagtactacgtcggatccaacaactccatcc 60
|||||||||| ||||||| |||| | ||||||||||||||||||||||||||| |||||
Sbjct: 70 acgacgtcgggtggctcatgaccatcgaccagtactacgtcggatccaacaacagcatcc 11
Query: 61 agg 63
|||
Sbjct: 10 agg 8
>gb|BI643686.1|BI643686 EM1_19_B03.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 558
Score = 73.8 bits (37), Expect = 2e-011
Identities = 52/57 (91%)
Strand = Plus / Plus
Query: 639 tataatgttgaagaacgagtaaatgattttgttgctgcagctgtagcacaggcaaat 695
|||||||| ||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct: 186 tataatgtccaagaacgtgtaaatgattttgttgctgcagccttagcacaggcaaat 242
Score = 48.1 bits (24), Expect = 0.001
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 762 tggttcggaaatatggacaaactaattcactatgtgaacaagga 805
|||||| |||||||||||||||| || || |||||||||||||
Sbjct: 309 tggttccgaaatatggacaaacttatccaacatgtgaacaagga 352
>gb|CL167351.1|CL167351 104_364_10810017_116_31803_081 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10810017, DNA
sequence
Length = 657
Score = 69.9 bits (35), Expect = 4e-010
Identities = 44/47 (93%)
Strand = Plus / Minus
Query: 17 caagaccgtagaccagtactacgtcggatccaacaactccatccagg 63
||||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct: 657 caagaccgtcgaccagtactacgtcggatccaacaacagcatccagg 611
>gb|BM327984.1|BM327984 PIC1_19_G12.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 662
Score = 65.9 bits (33), Expect = 6e-009
Identities = 39/41 (95%)
Strand = Plus / Minus
Query: 771 aatatggacaaactaattcactatgtgaacaaggatggccg 811
|||||||||||||| ||||| ||||||||||||||||||||
Sbjct: 397 aatatggacaaacttattcaatatgtgaacaaggatggccg 357
Score = 61.9 bits (31), Expect = 9e-008
Identities = 43/47 (91%)
Strand = Plus / Minus
Query: 649 aagaacgagtaaatgattttgttgctgcagctgtagcacaggcaaat 695
||||||| |||||||||||||||||| |||| ||||||||||||||
Sbjct: 519 aagaacgtgtaaatgattttgttgctacagccatagcacaggcaaat 473
>gb|CD209445.1|CD209445 HS1_42_F06.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_42_F06_A012 5', mRNA sequence
Length = 737
Score = 60.0 bits (30), Expect = 4e-007
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 843 tataccgatgcaaaatatgctgcaaatgagcaggggcctctc 884
||||||||||| ||||||||||||||||||| | ||||||||
Sbjct: 1 tataccgatgcgaaatatgctgcaaatgagctgtggcctctc 42
>gb|BG465084.1|BG465084 EM1_33_B07.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 124
Score = 58.0 bits (29), Expect = 1e-006
Identities = 42/45 (93%), Gaps = 1/45 (2%)
Strand = Plus / Plus
Query: 651 gaacgagtaaatgattttgttgctgcagctgtagcacaggcaaat 695
||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct: 1 gaacgtgtaaatgattttgttgctgcagc-ctagcacaggcaaat 44
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 247,695
Number of Sequences: 832831
Number of extensions: 247695
Number of successful extensions: 69714
Number of sequences better than 0.5: 24
Number of HSP's better than 0.5 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 69679
Number of HSP's gapped (non-prelim): 31
length of query: 888
length of database: 491,359,669
effective HSP length: 20
effective length of query: 868
effective length of database: 474,703,049
effective search space: 412042246532
effective search space used: 412042246532
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)