BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 5532690.2.1
(863 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BG488048.1|BG488048 RHIZ2_62_F03.g1_A003 Rhizome2 (RHIZ2... 630 e-179
gb|BM329328.1|BM329328 PIC1_36_C12.g1_A002 Pathogen-infecte... 611 e-173
gb|CD210537.1|CD210537 HS1_48_C10.b1_A012 Heat-shocked seed... 611 e-173
gb|BE600473.1|BE600473 PI1_96_E06.g1_A002 Pathogen induced ... 607 e-172
gb|AW745383.1|AW745383 WS1_34_G01.b1_A002 Water-stressed 1 ... 605 e-171
gb|BG241432.1|BG241432 RHIZ2_49_B04.g1_A003 Rhizome2 (RHIZ2... 603 e-170
gb|CD212729.1|CD212729 HS1_16_F09.b1_A012 Heat-shocked seed... 595 e-168
gb|BE597196.1|BE597196 PI1_69_D02.g1_A002 Pathogen induced ... 569 e-160
gb|AW679981.1|AW679981 WS1_34_G01.g1_A002 Water-stressed 1 ... 543 e-153
gb|BE601409.1|BE601409 PI1_92_F01.g1_A002 Pathogen induced ... 535 e-150
gb|BE597422.1|BE597422 PI1_69_D02.b1_A002 Pathogen induced ... 505 e-141
gb|BE600961.1|BE600961 PI1_95_C07.b1_A002 Pathogen induced ... 470 e-130
gb|BE600428.1|BE600428 PI1_96_B08.g1_A002 Pathogen induced ... 466 e-129
gb|BE600345.1|BE600345 PI1_95_C07.g1_A002 Pathogen induced ... 462 e-128
gb|BE601043.1|BE601043 PI1_96_B08.b1_A002 Pathogen induced ... 456 e-126
gb|CF759887.1|CF759887 DSAF1_52_E11.b1_A011 Drought-stresse... 339 3e-091
gb|CW118913.1|CW118913 104_495_11108468_116_34625_070 Sorgh... 240 2e-061
gb|CF759592.1|CF759592 DSAF1_47_B09.b1_A011 Drought-stresse... 238 7e-061
gb|CW118914.1|CW118914 104_495_11108468_148_34699_070 Sorgh... 149 5e-034
gb|BE601069.1|BE601069 PI1_96_E06.b1_A002 Pathogen induced ... 129 5e-028
gb|CF757750.1|CF757750 DSAF1_21_G08.g1_A011 Drought-stresse... 54 2e-005
gb|CW031890.1|CW031890 104_260_10501063_114_30365 Sorghum m... 42 0.084
gb|CW068383.1|CW068383 104_317_10525095_1_30096 Sorghum met... 42 0.084
gb|CW208201.1|CW208201 104_637_11188549_116_37043_053 Sorgh... 42 0.084
gb|CW214372.1|CW214372 104_646_11193979_116_37050_076 Sorgh... 42 0.084
gb|CW214373.1|CW214373 104_646_11193979_148_37054_076 Sorgh... 42 0.084
gb|CW218802.1|CW218802 104_652_11196382_116_37532_087 Sorgh... 42 0.084
gb|CW264883.1|CW264883 104_733_11231556_116_35256_034 Sorgh... 42 0.084
gb|CB926010.1|CB926010 ABA1_31_G01.b1_A012 Abscisic acid-tr... 42 0.084
>gb|BG488048.1|BG488048 RHIZ2_62_F03.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 524
Score = 630 bits (318), Expect = e-179
Identities = 446/486 (91%), Gaps = 7/486 (1%)
Strand = Plus / Minus
Query: 81 gcatccagctcaatgatgaatctttacaacgtgtttcttta--agttt----catcagat 134
|||||||| ||||||||||||||||||| |||||||||||| ||||| ||||||||
Sbjct: 495 gcatccagttcaatgatgaatctttacagcgtgtttctttacaagttttattcatcagat 436
Query: 135 tattcccaactttgaactccataaatggtaggacttggcacatccctgtcagagttcaat 194
|||||| || ||| | ||| ||||||||| | ||||| |||||||||||||||||| ||
Sbjct: 435 tattccaaa-tttcagatccgtaaatggtaaggcttggtacatccctgtcagagttccat 377
Query: 195 ggataattcgaactcttcatcacccaccgttagaacatgggcacccaatagaagtaccct 254
| |||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct: 376 gaataattcgaactcttcatcacccaccgtcagaacatgggcacccaataacagtaccct 317
Query: 255 tttgccttcaggattggctgcgctcatatgcttgcaggggtcaacagtaatctccacact 314
|||||||||||||||||||||||||||||||||||| ||||| || ||||||||||| |
Sbjct: 316 tttgccttcaggattggctgcgctcatatgcttgcaagggtcgacgctaatctccacatt 257
Query: 315 ggatgcactgccagccgccgtgtggacacgctcaaagccaaccagctgttttataggaaa 374
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 256 ggatgcactgccagccgccgtgtggacacgctcaaagccaaccagctgtttgataggaaa 197
Query: 375 gcccgggacgcttgatttcgatctcgcgaacagaagaacagcatgactcccatccatgct 434
|||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct: 196 gcccggaacgcttgatttcgatcttgcaaacagaagaacagcatgactcccatccatgct 137
Query: 435 accatgattcgaaacagcgacgtgaacagagaataccagagcttcacatgacgcgatatc 494
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct: 136 accatgattcgaaacagcgacatgaacagagaataccagagcttcacatgacgcaatatc 77
Query: 495 ttcagttttcacaaagtctagtccatccctccttgtgtatgcaggctttctgctgataat 554
|||||||||||| ||||||||||||||||||||| |||| | ||||||||| || |||||
Sbjct: 76 ttcagttttcacgaagtctagtccatccctccttatgtacgaaggctttctactaataat 17
Query: 555 gcccaa 560
| ||||
Sbjct: 16 gtccaa 11
>gb|BM329328.1|BM329328 PIC1_36_C12.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 673
Score = 611 bits (308), Expect = e-173
Identities = 454/500 (90%), Gaps = 7/500 (1%)
Strand = Plus / Minus
Query: 67 tgtttaccgtacacgcatccagctcaatgatgaatctttacaacgtgtttcttta--agt 124
||||||| |||| |||||||| ||||||||||||||||||| |||||||||||| |||
Sbjct: 621 tgtttactgtacttgcatccagttcaatgatgaatctttacagcgtgtttctttacaagt 562
Query: 125 tt----catcagattattcccaactttgaactccataaatggtaggacttggcacatccc 180
|| |||||||||||||| || ||| | ||| ||||||||| | ||||| |||||||
Sbjct: 561 tttattcatcagattattccaaa-tttcagatccgtaaatggtaaggcttggtacatccc 503
Query: 181 tgtcagagttcaatggataattcgaactcttcatcacccaccgttagaacatgggcaccc 240
||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |||||
Sbjct: 502 tgtcagagttcaatgaataattcgaactcttcatcacccaccgtcagaacatggtcaccc 443
Query: 241 aatagaagtacccttttgccttcaggattggctgcgctcatatgcttgcaggggtcaaca 300
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct: 442 aataacagtacccttttgccttcaggattggctgcgctcatatgcttgcaagggtcgacg 383
Query: 301 gtaatctccacactggatgcactgccagccgccgtgtggacacgctcaaagccaaccagc 360
||||||||||| |||||||||||||||||||||||||||||||||| || |||||||||
Sbjct: 382 ctaatctccacattggatgcactgccagccgccgtgtggacacgctcgaacccaaccagc 323
Query: 361 tgttttataggaaagcccgggacgcttgatttcgatctcgcgaacagaagaacagcatga 420
||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct: 322 tgtttgataggaaagcccggaacgcttgatttcgatctcgcaaacagaagaacagcatga 263
Query: 421 ctcccatccatgctaccatgattcgaaacagcgacgtgaacagagaataccagagcttca 480
||||||||||||||||||||||| ||||||||||| |||||||||||| |||||||||||
Sbjct: 262 ctcccatccatgctaccatgatttgaaacagcgacatgaacagagaatgccagagcttca 203
Query: 481 catgacgcgatatcttcagttttcacaaagtctagtccatccctccttgtgtatgcaggc 540
||||| || ||||||||||||||||| ||||||||||||||||||||| |||||| ||||
Sbjct: 202 catgatgcaatatcttcagttttcacgaagtctagtccatccctccttatgtatgaaggc 143
Query: 541 tttctgctgataatgcccaa 560
||||| || |||||| ||||
Sbjct: 142 tttctactaataatgtccaa 123
Score = 147 bits (74), Expect = 2e-033
Identities = 101/110 (91%)
Strand = Plus / Minus
Query: 561 cgacacggtgatcttcttcggagccaaggagatgctatatgaatatttggagtaacttaa 620
||||| |||||||||||| |||||| | |||||||||| ||||||||||||||||||||
Sbjct: 110 cgacatggtgatcttctttggagccgacaagatgctatacgaatatttggagtaacttaa 51
Query: 621 accatatccaaagccatacactacatctccagtgtaaaatcgatatgttc 670
||| |||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct: 50 accgtatccaaaaccatacactacatcgccagtgtaaaatcgatatgttc 1
Score = 46.1 bits (23), Expect = 0.005
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 82 catccagctcaatgatgaatctttaca 108
|||||| ||||||||||||||||||||
Sbjct: 651 catccaactcaatgatgaatctttaca 625
>gb|CD210537.1|CD210537 HS1_48_C10.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_48_C10_A012 3', mRNA sequence
Length = 728
Score = 611 bits (308), Expect = e-173
Identities = 454/500 (90%), Gaps = 7/500 (1%)
Strand = Plus / Minus
Query: 67 tgtttaccgtacacgcatccagctcaatgatgaatctttacaacgtgtttcttta--agt 124
||||||| |||| |||||||| ||||||||||||||||||| |||||||||||| |||
Sbjct: 676 tgtttactgtacttgcatccagttcaatgatgaatctttacagcgtgtttctttacaagt 617
Query: 125 tt----catcagattattcccaactttgaactccataaatggtaggacttggcacatccc 180
|| |||||||||||||| || ||| | ||| ||||||||| | ||||| |||||||
Sbjct: 616 tttattcatcagattattccaaa-tttcagatccgtaaatggtaaggcttggtacatccc 558
Query: 181 tgtcagagttcaatggataattcgaactcttcatcacccaccgttagaacatgggcaccc 240
||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |||||
Sbjct: 557 tgtcagagttcaatgaataattcgaactcttcatcacccaccgtcagaacatggtcaccc 498
Query: 241 aatagaagtacccttttgccttcaggattggctgcgctcatatgcttgcaggggtcaaca 300
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct: 497 aataacagtacccttttgccttcaggattggctgcgctcatatgcttgcaagggtcgacg 438
Query: 301 gtaatctccacactggatgcactgccagccgccgtgtggacacgctcaaagccaaccagc 360
||||||||||| |||||||||||||||||||||||||||||||||| || |||||||||
Sbjct: 437 ctaatctccacattggatgcactgccagccgccgtgtggacacgctcgaacccaaccagc 378
Query: 361 tgttttataggaaagcccgggacgcttgatttcgatctcgcgaacagaagaacagcatga 420
||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct: 377 tgtttgataggaaagcccggaacgcttgatttcgatctcgcaaacagaagaacagcatga 318
Query: 421 ctcccatccatgctaccatgattcgaaacagcgacgtgaacagagaataccagagcttca 480
||||||||||||||||||||||| ||||||||||| |||||||||||| |||||||||||
Sbjct: 317 ctcccatccatgctaccatgatttgaaacagcgacatgaacagagaatgccagagcttca 258
Query: 481 catgacgcgatatcttcagttttcacaaagtctagtccatccctccttgtgtatgcaggc 540
||||| || ||||||||||||||||| ||||||||||||||||||||| |||||| ||||
Sbjct: 257 catgatgcaatatcttcagttttcacgaagtctagtccatccctccttatgtatgaaggc 198
Query: 541 tttctgctgataatgcccaa 560
||||| || |||||| ||||
Sbjct: 197 tttctactaataatgtccaa 178
Score = 240 bits (121), Expect = 2e-061
Identities = 154/165 (93%)
Strand = Plus / Minus
Query: 561 cgacacggtgatcttcttcggagccaaggagatgctatatgaatatttggagtaacttaa 620
||||| |||||||||||| |||||| | |||||||||| ||||||||||||||||||||
Sbjct: 165 cgacatggtgatcttctttggagccgacaagatgctatacgaatatttggagtaacttaa 106
Query: 621 accatatccaaagccatacactacatctccagtgtaaaatcgatatgttctcccagggta 680
||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 105 accgtatccaaaaccatacactacatcgccagtgtaaaatcgatatgttctcccagggta 46
Query: 681 gcctcgtgaaggatcagctctcatgttcatatcagtcatgggaat 725
|||||||||||| |||||||||||||||||||||||||| |||||
Sbjct: 45 gcctcgtgaagggtcagctctcatgttcatatcagtcatcggaat 1
Score = 46.1 bits (23), Expect = 0.005
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 82 catccagctcaatgatgaatctttaca 108
|||||| ||||||||||||||||||||
Sbjct: 706 catccaactcaatgatgaatctttaca 680
>gb|BE600473.1|BE600473 PI1_96_E06.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 612
Score = 607 bits (306), Expect = e-172
Identities = 443/486 (91%), Gaps = 7/486 (1%)
Strand = Plus / Minus
Query: 81 gcatccagctcaatgatgaatctttacaacgtgtttcttta--agttt----catcagat 134
|||||||| ||||||||||||||||||| |||||||||||| ||||| ||||||||
Sbjct: 608 gcatccagttcaatgatgaatctttacagcgtgtttctttacaagttttattcatcagat 549
Query: 135 tattcccaactttgaactccataaatggtaggacttggcacatccctgtcagagttcaat 194
|||||| || ||| | ||| ||||||||| | ||||| |||||||||||||||||||||
Sbjct: 548 tattccaaa-tttcagatccgtaaatggtaaggcttggtacatccctgtcagagttcaat 490
Query: 195 ggataattcgaactcttcatcacccaccgttagaacatgggcacccaatagaagtaccct 254
| |||||||||||||||||||||||||||| ||||||||| ||||||||| ||||||||
Sbjct: 489 gaataattcgaactcttcatcacccaccgtcagaacatggtcacccaataacagtaccct 430
Query: 255 tttgccttcaggattggctgcgctcatatgcttgcaggggtcaacagtaatctccacact 314
|||||||||||||||||||||||||||||||||||| ||||| || ||||||||||| |
Sbjct: 429 tttgccttcaggattggctgcgctcatatgcttgcaagggtcgacgctaatctccacatt 370
Query: 315 ggatgcactgccagccgccgtgtggacacgctcaaagccaaccagctgttttataggaaa 374
||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||
Sbjct: 369 ggatgcactgccagccgccgtgtggacacgctcgaacccaaccagctgtttgataggaaa 310
Query: 375 gcccgggacgcttgatttcgatctcgcgaacagaagaacagcatgactcccatccatgct 434
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 309 gcccggaacgcttgatttcgatctcgcaaacagaagaacagcatgactcccatccatgct 250
Query: 435 accatgattcgaaacagcgacgtgaacagagaataccagagcttcacatgacgcgatatc 494
||||||||| ||||||||||| |||||||||||| |||||||||||||||| || |||||
Sbjct: 249 accatgatttgaaacagcgacatgaacagagaatgccagagcttcacatgatgcaatatc 190
Query: 495 ttcagttttcacaaagtctagtccatccctccttgtgtatgcaggctttctgctgataat 554
|||||||||||| ||||||||||||||||||||| |||||| ||||||||| || |||||
Sbjct: 189 ttcagttttcacgaagtctagtccatccctccttatgtatgaaggctttctactaataat 130
Query: 555 gcccaa 560
| ||||
Sbjct: 129 gtccaa 124
Score = 149 bits (75), Expect = 5e-034
Identities = 102/111 (91%)
Strand = Plus / Minus
Query: 561 cgacacggtgatcttcttcggagccaaggagatgctatatgaatatttggagtaacttaa 620
||||| |||||||||||| |||||| | |||||||||| ||||||||||||||||||||
Sbjct: 111 cgacatggtgatcttctttggagccgacaagatgctatacgaatatttggagtaacttaa 52
Query: 621 accatatccaaagccatacactacatctccagtgtaaaatcgatatgttct 671
||| |||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct: 51 accgtatccaaaaccatacactacatcgccagtgtaaaatcgatatgttct 1
>gb|AW745383.1|AW745383 WS1_34_G01.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 586
Score = 605 bits (305), Expect = e-171
Identities = 442/485 (91%), Gaps = 7/485 (1%)
Strand = Plus / Minus
Query: 82 catccagctcaatgatgaatctttacaacgtgtttcttta--agttt----catcagatt 135
||||||| ||||||||||||||||||| |||||||||||| ||||| |||||||||
Sbjct: 532 catccagttcaatgatgaatctttacagcgtgtttctttacaagttttattcatcagatt 473
Query: 136 attcccaactttgaactccataaatggtaggacttggcacatccctgtcagagttcaatg 195
||||| || ||| | ||| ||||||||| | ||||| ||||||||||||||||||||||
Sbjct: 472 attccaaa-tttcagatccgtaaatggtaaggcttggtacatccctgtcagagttcaatg 414
Query: 196 gataattcgaactcttcatcacccaccgttagaacatgggcacccaatagaagtaccctt 255
|||||||||||||||||||||||||||| ||||||||| ||||||||| |||||||||
Sbjct: 413 aataattcgaactcttcatcacccaccgtcagaacatggtcacccaataacagtaccctt 354
Query: 256 ttgccttcaggattggctgcgctcatatgcttgcaggggtcaacagtaatctccacactg 315
||||||||||||||||||||||||||||||||||| ||||| || ||||||||||| ||
Sbjct: 353 ttgccttcaggattggctgcgctcatatgcttgcaagggtcgacgctaatctccacattg 294
Query: 316 gatgcactgccagccgccgtgtggacacgctcaaagccaaccagctgttttataggaaag 375
|||||||||||||||||||||||||||||||| || |||||||||||||| |||||||||
Sbjct: 293 gatgcactgccagccgccgtgtggacacgctcgaacccaaccagctgtttgataggaaag 234
Query: 376 cccgggacgcttgatttcgatctcgcgaacagaagaacagcatgactcccatccatgcta 435
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 233 cccggaacgcttgatttcgatctcgcaaacagaagaacagcatgactcccatccatgcta 174
Query: 436 ccatgattcgaaacagcgacgtgaacagagaataccagagcttcacatgacgcgatatct 495
|||||||| ||||||||||| |||||||||||| |||||||||||||||| || ||||||
Sbjct: 173 ccatgatttgaaacagcgacatgaacagagaatgccagagcttcacatgatgcaatatct 114
Query: 496 tcagttttcacaaagtctagtccatccctccttgtgtatgcaggctttctgctgataatg 555
||||||||||| ||||||||||||||||||||| |||||| ||||||||| || ||||||
Sbjct: 113 tcagttttcacgaagtctagtccatccctccttatgtatgaaggctttctactaataatg 54
Query: 556 cccaa 560
||||
Sbjct: 53 tccaa 49
>gb|BG241432.1|BG241432 RHIZ2_49_B04.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 490
Score = 603 bits (304), Expect = e-170
Identities = 404/436 (92%), Gaps = 1/436 (0%)
Strand = Plus / Minus
Query: 125 ttcatcagattattcccaactttgaactccataaatggtaggacttggcacatccctgtc 184
|||||||||||||||| || ||| | ||| ||||||||| | ||||| |||||||||||
Sbjct: 462 ttcatcagattattccaaa-tttcagatccgtaaatggtaaggcttggtacatccctgtc 404
Query: 185 agagttcaatggataattcgaactcttcatcacccaccgttagaacatgggcacccaata 244
||||||| ||| |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 403 agagttccatgaataattcgaactcttcatcacccaccgtcagaacatgggcacccaata 344
Query: 245 gaagtacccttttgccttcaggattggctgcgctcatatgcttgcaggggtcaacagtaa 304
|||||||||||||||||||||||||||||||||||||||||||| ||||| || |||
Sbjct: 343 acagtacccttttgccttcaggattggctgcgctcatatgcttgcaagggtcgacgctaa 284
Query: 305 tctccacactggatgcactgccagccgccgtgtggacacgctcaaagccaaccagctgtt 364
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 tctccacattggatgcactgccagccgccgtgtggacacgctcaaagccaaccagctgtt 224
Query: 365 ttataggaaagcccgggacgcttgatttcgatctcgcgaacagaagaacagcatgactcc 424
| |||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||
Sbjct: 223 tgataggaaagcccggaacgcttgatttcgatcttgcaaacagaagaacagcatgactcc 164
Query: 425 catccatgctaccatgattcgaaacagcgacgtgaacagagaataccagagcttcacatg 484
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 163 catccatgctaccatgattcgaaacagcgacatgaacagagaataccagagcttcacatg 104
Query: 485 acgcgatatcttcagttttcacaaagtctagtccatccctccttgtgtatgcaggctttc 544
|||| ||||||||||||||||| ||||||||||||||||||||| |||| | ||||||||
Sbjct: 103 acgcaatatcttcagttttcacgaagtctagtccatccctccttatgtacgaaggctttc 44
Query: 545 tgctgataatgcccaa 560
| || |||||| ||||
Sbjct: 43 tactaataatgtccaa 28
>gb|CD212729.1|CD212729 HS1_16_F09.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_16_F09_A012 3', mRNA sequence
Length = 564
Score = 595 bits (300), Expect = e-168
Identities = 452/500 (90%), Gaps = 7/500 (1%)
Strand = Plus / Minus
Query: 67 tgtttaccgtacacgcatccagctcaatgatgaatctttacaacgtgtttcttta--agt 124
||||||| |||| |||||||| ||||||||||||||||||| ||||||||||| |||
Sbjct: 509 tgtttactgtacttgcatccagttcaatgatgaatctttacagtgtgtttctttacaagt 450
Query: 125 tt----catcagattattcccaactttgaactccataaatggtaggacttggcacatccc 180
|| |||||||||||||| || ||| | ||| ||||||||| | ||||| |||||||
Sbjct: 449 tttattcatcagattattccaaa-tttcagatccgtaaatggtaaggcttggtacatccc 391
Query: 181 tgtcagagttcaatggataattcgaactcttcatcacccaccgttagaacatgggcaccc 240
||||||||||||||| |||||||||||||||||||||||||||| | ||||||| |||||
Sbjct: 390 tgtcagagttcaatgaataattcgaactcttcatcacccaccgtcaaaacatggtcaccc 331
Query: 241 aatagaagtacccttttgccttcaggattggctgcgctcatatgcttgcaggggtcaaca 300
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct: 330 aataacagtacccttttgccttcaggattggctgcgctcatatgcttgcaagggtcgacg 271
Query: 301 gtaatctccacactggatgcactgccagccgccgtgtggacacgctcaaagccaaccagc 360
||||||||||| |||||||||||||||||||||||||||||||||| || |||||||||
Sbjct: 270 ctaatctccacattggatgcactgccagccgccgtgtggacacgctcgaacccaaccagc 211
Query: 361 tgttttataggaaagcccgggacgcttgatttcgatctcgcgaacagaagaacagcatga 420
||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct: 210 tgtttgataggaaagcccggaacgcttgatttcgatctcgcaaacagaagaacagcatga 151
Query: 421 ctcccatccatgctaccatgattcgaaacagcgacgtgaacagagaataccagagcttca 480
||||||||||||||||||||||| ||||||||||| |||||||||||| |||||||||||
Sbjct: 150 ctcccatccatgctaccatgatttgaaacagcgacatgaacagagaatgccagagcttca 91
Query: 481 catgacgcgatatcttcagttttcacaaagtctagtccatccctccttgtgtatgcaggc 540
||||| || ||||||||||||||||| ||||||||||||||||||||| |||||| ||||
Sbjct: 90 catgatgcaatatcttcagttttcacgaagtctagtccatccctccttatgtatgaaggc 31
Query: 541 tttctgctgataatgcccaa 560
||||| || |||||| ||||
Sbjct: 30 tttctactaataatgtccaa 11
Score = 46.1 bits (23), Expect = 0.005
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 82 catccagctcaatgatgaatctttaca 108
|||||| ||||||||||||||||||||
Sbjct: 539 catccaactcaatgatgaatctttaca 513
>gb|BE597196.1|BE597196 PI1_69_D02.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 541
Score = 569 bits (287), Expect = e-160
Identities = 374/403 (92%)
Strand = Plus / Minus
Query: 158 aatggtaggacttggcacatccctgtcagagttcaatggataattcgaactcttcatcac 217
||||||| | ||||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 480 aatggtaaggcttggtacatccctgtcagagttcaatgaataattcgaactcttcatcac 421
Query: 218 ccaccgttagaacatgggcacccaatagaagtacccttttgccttcaggattggctgcgc 277
||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct: 420 ccaccgtcagaacatggtcacccaataacagtacccttttgccttcaggattggctgcgc 361
Query: 278 tcatatgcttgcaggggtcaacagtaatctccacactggatgcactgccagccgccgtgt 337
||||||||||||| ||||| || ||||||||||| ||||||||||||||||||||||||
Sbjct: 360 tcatatgcttgcaagggtcgacgctaatctccacattggatgcactgccagccgccgtgt 301
Query: 338 ggacacgctcaaagccaaccagctgttttataggaaagcccgggacgcttgatttcgatc 397
|||||||||| || |||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct: 300 ggacacgctcgaacccaaccagctgtttgataggaaagcccggaacgcttgatttcgatc 241
Query: 398 tcgcgaacagaagaacagcatgactcccatccatgctaccatgattcgaaacagcgacgt 457
|||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct: 240 tcgcaaacagaagaacagcatgactcccatccatgctaccatgatttgaaacagcgacat 181
Query: 458 gaacagagaataccagagcttcacatgacgcgatatcttcagttttcacaaagtctagtc 517
||||||||||| |||||||||||||||| || ||||||||||||||||| ||||||||||
Sbjct: 180 gaacagagaatgccagagcttcacatgatgcaatatcttcagttttcacgaagtctagtc 121
Query: 518 catccctccttgtgtatgcaggctttctgctgataatgcccaa 560
||||||||||| |||||| ||||||||| || |||||| ||||
Sbjct: 120 catccctccttatgtatgaaggctttctactaataatgtccaa 78
Score = 65.9 bits (33), Expect = 6e-009
Identities = 51/57 (89%)
Strand = Plus / Minus
Query: 561 cgacacggtgatcttcttcggagccaaggagatgctatatgaatatttggagtaact 617
||||| |||||||||||| |||||| | |||||||||| |||||||||||||||||
Sbjct: 65 cgacatggtgatcttctttggagccgacaagatgctatacgaatatttggagtaact 9
>gb|AW679981.1|AW679981 WS1_34_G01.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 501
Score = 543 bits (274), Expect = e-153
Identities = 405/446 (90%), Gaps = 7/446 (1%)
Strand = Plus / Minus
Query: 67 tgtttaccgtacacgcatccagctcaatgatgaatctttacaacgtgtttcttta--agt 124
||||||| |||| |||||||| ||||||||||||||||||| || ||||||||| |||
Sbjct: 449 tgtttactgtacttgcatccagttcaatgatgaatctttacagcgggtttctttacaagt 390
Query: 125 tt----catcagattattcccaactttgaactccataaatggtaggacttggcacatccc 180
|| |||||||||||||| || ||| | ||| ||||||||| | ||||| |||||||
Sbjct: 389 tttattcatcagattattccaaa-tttcagatccgtaaatggtaaggcttggtacatccc 331
Query: 181 tgtcagagttcaatggataattcgaactcttcatcacccaccgttagaacatgggcaccc 240
||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |||||
Sbjct: 330 tgtcagagttcaatgaataattcgaactcttcatcacccaccgtcagaacatggtcaccc 271
Query: 241 aatagaagtacccttttgccttcaggattggctgcgctcatatgcttgcaggggtcaaca 300
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct: 270 aataacagtacccttttgccttcaggattggctgcgctcatatgcttgcaagggtcgacg 211
Query: 301 gtaatctccacactggatgcactgccagccgccgtgtggacacgctcaaagccaaccagc 360
||||||||||| |||||||||||||||||||||||||||||||||| || |||||||||
Sbjct: 210 ctaatctccacattggatgcactgccagccgccgtgtggacacgctcgaacccaaccagc 151
Query: 361 tgttttataggaaagcccgggacgcttgatttcgatctcgcgaacagaagaacagcatga 420
||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct: 150 tgtttgataggaaagcccggaacgcttgatttcgatctcgcaaacagaagaacagcatga 91
Query: 421 ctcccatccatgctaccatgattcgaaacagcgacgtgaacagagaataccagagcttca 480
||||||||||||||||||||||| ||||||||||| |||||||||||| |||||||||||
Sbjct: 90 ctcccatccatgctaccatgatttgaaacagcgacatgaacagagaatgccagagcttca 31
Query: 481 catgacgcgatatcttcagttttcac 506
||||| || |||||||||||||||||
Sbjct: 30 catgatgcaatatcttcagttttcac 5
Score = 46.1 bits (23), Expect = 0.005
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 82 catccagctcaatgatgaatctttaca 108
|||||| ||||||||||||||||||||
Sbjct: 479 catccaactcaatgatgaatctttaca 453
>gb|BE601409.1|BE601409 PI1_92_F01.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 438
Score = 535 bits (270), Expect = e-150
Identities = 398/438 (90%), Gaps = 7/438 (1%)
Strand = Plus / Minus
Query: 67 tgtttaccgtacacgcatccagctcaatgatgaatctttacaacgtgtttcttta--agt 124
||||||| |||| |||||||| ||||||||||||||||||| |||||||||||| |||
Sbjct: 437 tgtttactgtacttgcatccagttcaatgatgaatctttacagcgtgtttctttacaagt 378
Query: 125 tt----catcagattattcccaactttgaactccataaatggtaggacttggcacatccc 180
|| |||||||||||||| || ||| | ||| ||||||||| | ||||| |||||||
Sbjct: 377 tttattcatcagattattccaaa-tttcagatccgtaaatggtaaggcttggtacatccc 319
Query: 181 tgtcagagttcaatggataattcgaactcttcatcacccaccgttagaacatgggcaccc 240
||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |||||
Sbjct: 318 tgtcagagttcaatgaataattcgaactcttcatcacccaccgtcagaacatggtcaccc 259
Query: 241 aatagaagtacccttttgccttcaggattggctgcgctcatatgcttgcaggggtcaaca 300
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct: 258 aataacagtacccttttgccttcaggattggctgcgctcatatgcttgcaagggtcgacg 199
Query: 301 gtaatctccacactggatgcactgccagccgccgtgtggacacgctcaaagccaaccagc 360
||||||||||| |||||||||||||||||||||||||||||||||| || |||||||||
Sbjct: 198 ctaatctccacattggatgcactgccagccgccgtgtggacacgctcgaacccaaccagc 139
Query: 361 tgttttataggaaagcccgggacgcttgatttcgatctcgcgaacagaagaacagcatga 420
||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct: 138 tgtttgataggaaagcccggaacgcttgatttcgatctcgcaaacagaagaacagcatga 79
Query: 421 ctcccatccatgctaccatgattcgaaacagcgacgtgaacagagaataccagagcttca 480
||||||||||||||||||||||| ||||||||||| |||||||||||| |||||||||||
Sbjct: 78 ctcccatccatgctaccatgatttgaaacagcgacatgaacagagaatgccagagcttca 19
Query: 481 catgacgcgatatcttca 498
||||| || |||||||||
Sbjct: 18 catgatgcaatatcttca 1
>gb|BE597422.1|BE597422 PI1_69_D02.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 432
Score = 505 bits (255), Expect = e-141
Identities = 330/355 (92%)
Strand = Plus / Minus
Query: 206 actcttcatcacccaccgttagaacatgggcacccaatagaagtacccttttgccttcag 265
||||||||||||||||||| ||||||||| ||||||||| |||||||||||||||||||
Sbjct: 432 actcttcatcacccaccgtcagaacatggtcacccaataacagtacccttttgccttcag 373
Query: 266 gattggctgcgctcatatgcttgcaggggtcaacagtaatctccacactggatgcactgc 325
||||||||||||||||||||||||| ||||| || ||||||||||| ||||||||||||
Sbjct: 372 gattggctgcgctcatatgcttgcaagggtcgacgctaatctccacattggatgcactgc 313
Query: 326 cagccgccgtgtggacacgctcaaagccaaccagctgttttataggaaagcccgggacgc 385
|||||||||||||||||||||| || |||||||||||||| |||||||||||||| ||||
Sbjct: 312 cagccgccgtgtggacacgctcgaacccaaccagctgtttgataggaaagcccggaacgc 253
Query: 386 ttgatttcgatctcgcgaacagaagaacagcatgactcccatccatgctaccatgattcg 445
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 252 ttgatttcgatctcgcaaacagaagaacagcatgactcccatccatgctaccatgatttg 193
Query: 446 aaacagcgacgtgaacagagaataccagagcttcacatgacgcgatatcttcagttttca 505
|||||||||| |||||||||||| |||||||||||||||| || ||||||||||||||||
Sbjct: 192 aaacagcgacatgaacagagaatgccagagcttcacatgatgcaatatcttcagttttca 133
Query: 506 caaagtctagtccatccctccttgtgtatgcaggctttctgctgataatgcccaa 560
| ||||||||||||||||||||| |||||| ||||||||| || |||||| ||||
Sbjct: 132 cgaagtctagtccatccctccttatgtatgaaggctttctactaataatgtccaa 78
Score = 65.9 bits (33), Expect = 6e-009
Identities = 51/57 (89%)
Strand = Plus / Minus
Query: 561 cgacacggtgatcttcttcggagccaaggagatgctatatgaatatttggagtaact 617
||||| |||||||||||| |||||| | |||||||||| |||||||||||||||||
Sbjct: 65 cgacatggtgatcttctttggagccgacaagatgctatacgaatatttggagtaact 9
>gb|BE600961.1|BE600961 PI1_95_C07.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 363
Score = 470 bits (237), Expect = e-130
Identities = 316/341 (92%), Gaps = 1/341 (0%)
Strand = Plus / Minus
Query: 125 ttcatcagattattcccaactttgaactccataaatggtaggacttggcacatccctgtc 184
|||||||||||||||| || ||| | ||| ||||||||| | |||||||||||||||||
Sbjct: 348 ttcatcagattattccaaa-tttcagatccgtaaatggtaaggcttggcacatccctgtc 290
Query: 185 agagttcaatggataattcgaactcttcatcacccaccgttagaacatgggcacccaata 244
||||||||||| |||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct: 289 agagttcaatgaataattcgaactcttcatcacccaccgtcagaacatggtcacccaata 230
Query: 245 gaagtacccttttgccttcaggattggctgcgctcatatgcttgcaggggtcaacagtaa 304
|||||||||||||||||||||||||||||||||||||||||||| ||||| || |||
Sbjct: 229 acagtacccttttgccttcaggattggctgcgctcatatgcttgcaagggtcgacgctaa 170
Query: 305 tctccacactggatgcactgccagccgccgtgtggacacgctcaaagccaaccagctgtt 364
|||||||| |||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct: 169 tctccacattggatgcactgccagccgccgtgtggacacgctcgaacccaaccagctgtt 110
Query: 365 ttataggaaagcccgggacgcttgatttcgatctcgcgaacagaagaacagcatgactcc 424
| |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 109 tgataggaaagcccggaacgcttgatttcgatctcgcaaacagaagaacagcatgactcc 50
Query: 425 catccatgctaccatgattcgaaacagcgacgtgaacagag 465
||||||||||||||||||| ||||||||||| |||||||||
Sbjct: 49 catccatgctaccatgatttgaaacagcgacatgaacagag 9
>gb|BE600428.1|BE600428 PI1_96_B08.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 387
Score = 466 bits (235), Expect = e-129
Identities = 346/379 (91%), Gaps = 8/379 (2%)
Strand = Plus / Minus
Query: 93 atgatgaatctttacaacgtgtttcttta--agttt----catcagattattcccaactt 146
|||||||||||||||| |||||||||||| ||||| |||||||||||||| || ||
Sbjct: 385 atgatgaatctttaca-cgtgtttctttacaagttttattcatcagattattccaaa-tt 328
Query: 147 tgaactccataaatggtaggacttggcacatccctgtcagagttcaatggataattcgaa 206
| | ||| ||||||||| | ||||| |||||||||||||||||||||| ||||||||||
Sbjct: 327 tcagatccgtaaatggtaaggcttggtacatccctgtcagagttcaatgaataattcgaa 268
Query: 207 ctcttcatcacccaccgttagaacatgggcacccaatagaagtacccttttgccttcagg 266
|||||||||||||||||| ||||||||| ||||||||| ||||||||||||||||||||
Sbjct: 267 ctcttcatcacccaccgtcagaacatggtcacccaataacagtacccttttgccttcagg 208
Query: 267 attggctgcgctcatatgcttgcaggggtcaacagtaatctccacactggatgcactgcc 326
|||||||||||||||||||||||| ||||| || ||||||||||| |||||||||||||
Sbjct: 207 attggctgcgctcatatgcttgcaagggtcgacgctaatctccacattggatgcactgcc 148
Query: 327 agccgccgtgtggacacgctcaaagccaaccagctgttttataggaaagcccgggacgct 386
||||||||||||||||||||| || |||||||||||||| |||||||||||||| |||||
Sbjct: 147 agccgccgtgtggacacgctcgaacccaaccagctgtttgataggaaagcccggaacgct 88
Query: 387 tgatttcgatctcgcgaacagaagaacagcatgactcccatccatgctaccatgattcga 446
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 87 tgatttcgatctcgcaaacagaagaacagcatgactcccatccatgctaccatgatttga 28
Query: 447 aacagcgacgtgaacagag 465
||||||||| |||||||||
Sbjct: 27 aacagcgacatgaacagag 9
>gb|BE600345.1|BE600345 PI1_95_C07.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 383
Score = 462 bits (233), Expect = e-128
Identities = 315/341 (92%), Gaps = 1/341 (0%)
Strand = Plus / Minus
Query: 125 ttcatcagattattcccaactttgaactccataaatggtaggacttggcacatccctgtc 184
|||||||||||||||| || ||| | ||| ||||||||| | ||||| |||||||||||
Sbjct: 348 ttcatcagattattccaaa-tttcagatccgtaaatggtaaggcttggtacatccctgtc 290
Query: 185 agagttcaatggataattcgaactcttcatcacccaccgttagaacatgggcacccaata 244
||||||||||| |||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct: 289 agagttcaatgaataattcgaactcttcatcacccaccgtcagaacatggtcacccaata 230
Query: 245 gaagtacccttttgccttcaggattggctgcgctcatatgcttgcaggggtcaacagtaa 304
|||||||||||||||||||||||||||||||||||||||||||| ||||| || |||
Sbjct: 229 acagtacccttttgccttcaggattggctgcgctcatatgcttgcaagggtcgacgctaa 170
Query: 305 tctccacactggatgcactgccagccgccgtgtggacacgctcaaagccaaccagctgtt 364
|||||||| |||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct: 169 tctccacattggatgcactgccagccgccgtgtggacacgctcgaacccaaccagctgtt 110
Query: 365 ttataggaaagcccgggacgcttgatttcgatctcgcgaacagaagaacagcatgactcc 424
| |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 109 tgataggaaagcccggaacgcttgatttcgatctcgcaaacagaagaacagcatgactcc 50
Query: 425 catccatgctaccatgattcgaaacagcgacgtgaacagag 465
||||||||||||||||||| ||||||||||| |||||||||
Sbjct: 49 catccatgctaccatgatttgaaacagcgacatgaacagag 9
>gb|BE601043.1|BE601043 PI1_96_B08.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 318
Score = 456 bits (230), Expect = e-126
Identities = 290/310 (93%)
Strand = Plus / Minus
Query: 156 taaatggtaggacttggcacatccctgtcagagttcaatggataattcgaactcttcatc 215
||||||||| | ||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct: 318 taaatggtaaggcttggtacatccctgtcagagttcaatgaataattcgaactcttcatc 259
Query: 216 acccaccgttagaacatgggcacccaatagaagtacccttttgccttcaggattggctgc 275
||||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct: 258 acccaccgtcagaacatggtcacccaataacagtacccttttgccttcaggattggctgc 199
Query: 276 gctcatatgcttgcaggggtcaacagtaatctccacactggatgcactgccagccgccgt 335
||||||||||||||| ||||| || ||||||||||| ||||||||||||||||||||||
Sbjct: 198 gctcatatgcttgcaagggtcgacgctaatctccacattggatgcactgccagccgccgt 139
Query: 336 gtggacacgctcaaagccaaccagctgttttataggaaagcccgggacgcttgatttcga 395
|||||||||||| || |||||||||||||| |||||||||||||| ||||||||||||||
Sbjct: 138 gtggacacgctcgaacccaaccagctgtttgataggaaagcccggaacgcttgatttcga 79
Query: 396 tctcgcgaacagaagaacagcatgactcccatccatgctaccatgattcgaaacagcgac 455
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 78 tctcgcaaacagaagaacagcatgactcccatccatgctaccatgatttgaaacagcgac 19
Query: 456 gtgaacagag 465
|||||||||
Sbjct: 18 atgaacagag 9
>gb|CF759887.1|CF759887 DSAF1_52_E11.b1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_52_E11_A011 5', mRNA sequence
Length = 388
Score = 339 bits (171), Expect = 3e-091
Identities = 204/215 (94%)
Strand = Plus / Minus
Query: 649 ccagtgtaaaatcgatatgttctcccagggtagcctcgtgaaggatcagctctcatgttc 708
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 386 ccagtgtaaaatcgatatgttctcccagggtagcctcgtgaagggtcagctctcatgttc 327
Query: 709 atatcagtcatgggaatagcagtaaaggattcaggataccaagttataggcagctttcct 768
||||||||||| |||||||||||||||||||| ||||||||||| |||| ||||||||||
Sbjct: 326 atatcagtcatcggaatagcagtaaaggattcgggataccaagtcatagccagctttcct 267
Query: 769 cctgggttgtactctccaaaaagaatttctggaaggacttgtccaccaacctcgccagga 828
| ||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||
Sbjct: 266 catgggttgtactctccaaaaagaatttccggaaggacctgtccaccaacctcaccagga 207
Query: 829 tatccgagccaaagaatgcttgcgattcgcggatc 863
||||||||||||||||||||||| ||||| |||||
Sbjct: 206 tatccgagccaaagaatgcttgcaattcgtggatc 172
>gb|CW118913.1|CW118913 104_495_11108468_116_34625_070 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11108468, DNA
sequence
Length = 223
Score = 240 bits (121), Expect = 2e-061
Identities = 182/201 (90%), Gaps = 1/201 (0%)
Strand = Plus / Plus
Query: 125 ttcatcagattattcccaactttgaactccataaatggtaggacttggcacatccctgtc 184
|||||||||||||||| || ||| | ||| ||||||||| | ||||| |||||||||||
Sbjct: 24 ttcatcagattattccaaa-tttcagatccgtaaatggtaaggcttggtacatccctgtc 82
Query: 185 agagttcaatggataattcgaactcttcatcacccaccgttagaacatgggcacccaata 244
||||||||||| |||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct: 83 agagttcaatgaataattcgaactcttcatcacccaccgtcagaacatggtcacccaata 142
Query: 245 gaagtacccttttgccttcaggattggctgcgctcatatgcttgcaggggtcaacagtaa 304
|||||||||||||||||||||||||||||||||||||||||||| ||||| || |||
Sbjct: 143 acagtacccttttgccttcaggattggctgcgctcatatgcttgcaagggtcgacgctaa 202
Query: 305 tctccacactggatgcactgc 325
|||||||| ||||||||||||
Sbjct: 203 tctccacattggatgcactgc 223
>gb|CF759592.1|CF759592 DSAF1_47_B09.b1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_47_B09_A011 5', mRNA sequence
Length = 496
Score = 238 bits (120), Expect = 7e-061
Identities = 147/156 (94%)
Strand = Plus / Minus
Query: 708 catatcagtcatgggaatagcagtaaaggattcaggataccaagttataggcagctttcc 767
|||||||||||| |||||||||||||||||||| ||||||||||| |||| |||||||||
Sbjct: 496 catatcagtcatcggaatagcagtaaaggattcgggataccaagtcatagccagctttcc 437
Query: 768 tcctgggttgtactctccaaaaagaatttctggaaggacttgtccaccaacctcgccagg 827
|||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||
Sbjct: 436 tcctgggttgtactctccaaaaagaatttccggaaggacctgtccaccaacctcaccagg 377
Query: 828 atatccgagccaaagaatgcttgcgattcgcggatc 863
|||||||||||||||||||||||| ||||| |||||
Sbjct: 376 atatccgagccaaagaatgcttgcaattcgtggatc 341
>gb|CW118914.1|CW118914 104_495_11108468_148_34699_070 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11108468, DNA
sequence
Length = 572
Score = 149 bits (75), Expect = 5e-034
Identities = 90/95 (94%)
Strand = Plus / Minus
Query: 769 cctgggttgtactctccaaaaagaatttctggaaggacttgtccaccaacctcgccagga 828
||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||
Sbjct: 481 cctgggttgtactctccaaaaagaatttccggaaggacctgtccaccaacctcaccagga 422
Query: 829 tatccgagccaaagaatgcttgcgattcgcggatc 863
||||||||||||||||||||||| ||||| |||||
Sbjct: 421 tatccgagccaaagaatgcttgcaattcgtggatc 387
>gb|BE601069.1|BE601069 PI1_96_E06.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 513
Score = 129 bits (65), Expect = 5e-028
Identities = 83/89 (93%)
Strand = Plus / Minus
Query: 775 ttgtactctccaaaaagaatttctggaaggacttgtccaccaacctcgccaggatatccg 834
||||||||||||||||||||| | |||||||| |||||||||||||| ||||||||||||
Sbjct: 513 ttgtactctccaaaaagaattcccggaaggacctgtccaccaacctcaccaggatatccg 454
Query: 835 agccaaagaatgcttgcgattcgcggatc 863
||||||||||||||||| ||||| |||||
Sbjct: 453 agccaaagaatgcttgcaattcgtggatc 425
>gb|CF757750.1|CF757750 DSAF1_21_G08.g1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_21_G08_A011 3', mRNA sequence
Length = 123
Score = 54.0 bits (27), Expect = 2e-005
Identities = 48/55 (87%)
Strand = Plus / Minus
Query: 67 tgtttaccgtacacgcatccagctcaatgatgaatctttacaacgtgtttcttta 121
||||||| |||| |||||||| ||||||||||||||||||| || ||||||||
Sbjct: 65 tgtttactgtacttgcatccaggtcaatgatgaatctttacagcggatttcttta 11
>gb|CW031890.1|CW031890 104_260_10501063_114_30365 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10501063, DNA
sequence
Length = 704
Score = 42.1 bits (21), Expect = 0.084
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 553 atgcccaacgacacggtgatc 573
|||||||||||||||||||||
Sbjct: 178 atgcccaacgacacggtgatc 198
>gb|CW068383.1|CW068383 104_317_10525095_1_30096 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10525095, DNA
sequence
Length = 692
Score = 42.1 bits (21), Expect = 0.084
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 553 atgcccaacgacacggtgatc 573
|||||||||||||||||||||
Sbjct: 592 atgcccaacgacacggtgatc 612
>gb|CW208201.1|CW208201 104_637_11188549_116_37043_053 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11188549, DNA
sequence
Length = 666
Score = 42.1 bits (21), Expect = 0.084
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 553 atgcccaacgacacggtgatc 573
|||||||||||||||||||||
Sbjct: 60 atgcccaacgacacggtgatc 80
>gb|CW214372.1|CW214372 104_646_11193979_116_37050_076 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11193979, DNA
sequence
Length = 755
Score = 42.1 bits (21), Expect = 0.084
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 553 atgcccaacgacacggtgatc 573
|||||||||||||||||||||
Sbjct: 550 atgcccaacgacacggtgatc 530
>gb|CW214373.1|CW214373 104_646_11193979_148_37054_076 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11193979, DNA
sequence
Length = 727
Score = 42.1 bits (21), Expect = 0.084
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 553 atgcccaacgacacggtgatc 573
|||||||||||||||||||||
Sbjct: 297 atgcccaacgacacggtgatc 317
>gb|CW218802.1|CW218802 104_652_11196382_116_37532_087 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11196382, DNA
sequence
Length = 494
Score = 42.1 bits (21), Expect = 0.084
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 553 atgcccaacgacacggtgatc 573
|||||||||||||||||||||
Sbjct: 114 atgcccaacgacacggtgatc 134
>gb|CW264883.1|CW264883 104_733_11231556_116_35256_034 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11231556, DNA
sequence
Length = 693
Score = 42.1 bits (21), Expect = 0.084
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 553 atgcccaacgacacggtgatc 573
|||||||||||||||||||||
Sbjct: 139 atgcccaacgacacggtgatc 119
>gb|CB926010.1|CB926010 ABA1_31_G01.b1_A012 Abscisic acid-treated seedlings Sorghum bicolor
cDNA clone ABA1_31_G01_A012 3', mRNA sequence
Length = 500
Score = 42.1 bits (21), Expect = 0.084
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 553 atgcccaacgacacggtgatc 573
|||||||||||||||||||||
Sbjct: 25 atgcccaacgacacggtgatc 5
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 183,057
Number of Sequences: 832831
Number of extensions: 183057
Number of successful extensions: 46560
Number of sequences better than 0.5: 29
Number of HSP's better than 0.5 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 46471
Number of HSP's gapped (non-prelim): 74
length of query: 863
length of database: 491,359,669
effective HSP length: 20
effective length of query: 843
effective length of database: 474,703,049
effective search space: 400174670307
effective search space used: 400174670307
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)