BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 5352090.2.1
(915 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AW565047.1|AW565047 LG1_319_F02.b1_A002 Light Grown 1 (L... 466 e-129
gb|AW565040.1|AW565040 LG1_319_A03.b1_A002 Light Grown 1 (L... 464 e-129
gb|AW565046.1|AW565046 LG1_319_H02.b1_A002 Light Grown 1 (L... 440 e-121
gb|CW145991.1|CW145991 104_538_11138754_148_34981_067 Sorgh... 438 e-121
gb|CW145990.1|CW145990 104_538_11138754_116_34977_067 Sorgh... 180 1e-043
gb|CW472319.1|CW472319 fsbb001f227d07f0 Sorghum methylation... 82 1e-013
gb|BF586440.1|BF586440 FM1_28_B10.b1_A003 Floral-Induced Me... 82 1e-013
gb|CW147001.1|CW147001 104_540_11139287_148_34992_094 Sorgh... 64 2e-008
gb|CW297315.1|CW297315 104_779_11461978_116_35637_039 Sorgh... 64 2e-008
gb|CW297316.1|CW297316 104_779_11461978_148_35641_039 Sorgh... 64 2e-008
gb|CW469768.1|CW469768 fsbb001f222k05f0 Sorghum methylation... 64 2e-008
gb|CW290318.1|CW290318 104_769_11412947_116_35555_040 Sorgh... 62 1e-007
gb|CW150436.1|CW150436 104_549_11143025_116_36299_065 Sorgh... 48 0.001
gb|CW172886.1|CW172886 104_584_11156540_116_36548_076 Sorgh... 48 0.001
gb|CW284396.1|CW284396 104_761_11409757_116_35489_059 Sorgh... 48 0.001
gb|CW284397.1|CW284397 104_761_11409757_148_35493_059 Sorgh... 48 0.001
gb|CW430914.1|CW430914 fsbb001f144n17f0 Sorghum methylation... 44 0.022
gb|CW021125.1|CW021125 104_109_10409361_114_30491 Sorghum m... 42 0.089
gb|CW227178.1|CW227178 104_665_11205277_148_37224_055 Sorgh... 42 0.089
gb|CW406294.1|CW406294 fsbb001f099d24f0 Sorghum methylation... 42 0.089
gb|BZ629195.1|BZ629195 ih64g06.b1 WGS-SbicolorF (DH5a methy... 40 0.35
gb|BZ629196.1|BZ629196 ih64g06.g1 WGS-SbicolorF (DH5a methy... 40 0.35
gb|CW324279.1|CW324279 104_818_11477073_116_35904_035 Sorgh... 40 0.35
gb|BM318649.1|BM318649 PI1_16_A08.b9_A002 Pathogen induced ... 40 0.35
gb|CD461842.1|CD461842 SA1_35_B10.g1_A002 Salicylic acid-tr... 40 0.35
gb|CN126830.1|CN126830 RHOH1_19_A05.g1_A002 Acid- and alkal... 40 0.35
gb|CX621353.1|CX621353 GABR1_57_D08.g1_A002 GA- or brassino... 40 0.35
gb|CX621689.1|CX621689 GABR1_59_C11.g1_A002 GA- or brassino... 40 0.35
>gb|AW565047.1|AW565047 LG1_319_F02.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 367
Score = 466 bits (235), Expect = e-129
Identities = 283/299 (94%)
Strand = Plus / Plus
Query: 67 ggcagaagcaagaaccagcaagaaaggggagagagaaagcggaaggactttttctcggat 126
|||||||||||||||||||||||||||||||||||||||| || | |||||| |||||||
Sbjct: 69 ggcagaagcaagaaccagcaagaaaggggagagagaaagccgaggaacttttcctcggat 128
Query: 127 tggatccttcgcttttgggggaaggagaaggcccctctctgtcctctctccatccttgcg 186
||||||||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||
Sbjct: 129 tggatccttcgcttttgggggaaggagaaggcccctctcagtcgtctctccgtccttgcg 188
Query: 187 gagggcgctagcaggagcagcggaaggaggaagagatgttcccgcctggcctgatccacc 246
||||||| |||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct: 189 gagggcggcagcaggagcagcaggaggaggaagagatgttcccgcctggcctgatccacc 248
Query: 247 accgccctgacgcccccgttcccggcgatggggcgacacgctccggccccggcgggccga 306
||||| |||||||||| | |||||||||||||||| | ||||||||||||||||||||||
Sbjct: 249 accgcgctgacgccccagctcccggcgatggggcgccgcgctccggccccggcgggccga 308
Query: 307 gccttgtactgacggcggaccccaagcccaggctgcggtggacggccgacctccacgag 365
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gccttgtactgacggcggaccccaagcccaggctgcggtggacggccgacctccacgag 367
Score = 50.1 bits (25), Expect = 4e-004
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 32 gaatcgctgccagtggaaagcggca 56
|||||||||||||||||||||||||
Sbjct: 48 gaatcgctgccagtggaaagcggca 72
>gb|AW565040.1|AW565040 LG1_319_A03.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 366
Score = 464 bits (234), Expect = e-129
Identities = 282/298 (94%)
Strand = Plus / Plus
Query: 67 ggcagaagcaagaaccagcaagaaaggggagagagaaagcggaaggactttttctcggat 126
|||||||||||||||||||||||||||||||||||||||| || | |||||| |||||||
Sbjct: 69 ggcagaagcaagaaccagcaagaaaggggagagagaaagccgaggaacttttcctcggat 128
Query: 127 tggatccttcgcttttgggggaaggagaaggcccctctctgtcctctctccatccttgcg 186
||||||||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||
Sbjct: 129 tggatccttcgcttttgggggaaggagaaggcccctctcagtcgtctctccgtccttgcg 188
Query: 187 gagggcgctagcaggagcagcggaaggaggaagagatgttcccgcctggcctgatccacc 246
||||||| |||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct: 189 gagggcggcagcaggagcagcaggaggaggaagagatgttcccgcctggcctgatccacc 248
Query: 247 accgccctgacgcccccgttcccggcgatggggcgacacgctccggccccggcgggccga 306
||||| |||||||||| | |||||||||||||||| | ||||||||||||||||||||||
Sbjct: 249 accgcgctgacgccccagctcccggcgatggggcgccgcgctccggccccggcgggccga 308
Query: 307 gccttgtactgacggcggaccccaagcccaggctgcggtggacggccgacctccacga 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gccttgtactgacggcggaccccaagcccaggctgcggtggacggccgacctccacga 366
Score = 50.1 bits (25), Expect = 4e-004
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 32 gaatcgctgccagtggaaagcggca 56
|||||||||||||||||||||||||
Sbjct: 48 gaatcgctgccagtggaaagcggca 72
>gb|AW565046.1|AW565046 LG1_319_H02.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 354
Score = 440 bits (222), Expect = e-121
Identities = 270/286 (94%)
Strand = Plus / Plus
Query: 67 ggcagaagcaagaaccagcaagaaaggggagagagaaagcggaaggactttttctcggat 126
|||||||||||||||||||||||||||||||||||||||| || | |||||| |||||||
Sbjct: 69 ggcagaagcaagaaccagcaagaaaggggagagagaaagccgaggaacttttcctcggat 128
Query: 127 tggatccttcgcttttgggggaaggagaaggcccctctctgtcctctctccatccttgcg 186
||||||||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||
Sbjct: 129 tggatccttcgcttttgggggaaggagaaggcccctctcagtcgtctctccgtccttgcg 188
Query: 187 gagggcgctagcaggagcagcggaaggaggaagagatgttcccgcctggcctgatccacc 246
||||||| |||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct: 189 gagggcggcagcaggagcagcaggaggaggaagagatgttcccgcctggcctgatccacc 248
Query: 247 accgccctgacgcccccgttcccggcgatggggcgacacgctccggccccggcgggccga 306
||||| |||||||||| | |||||||||||||||| | ||||||||||||||||||||||
Sbjct: 249 accgcgctgacgccccagctcccggcgatggggcgccgcgctccggccccggcgggccga 308
Query: 307 gccttgtactgacggcggaccccaagcccaggctgcggtggacggc 352
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gccttgtactgacggcggaccccaagcccaggctgcggtggacggc 354
Score = 50.1 bits (25), Expect = 4e-004
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 32 gaatcgctgccagtggaaagcggca 56
|||||||||||||||||||||||||
Sbjct: 48 gaatcgctgccagtggaaagcggca 72
>gb|CW145991.1|CW145991 104_538_11138754_148_34981_067 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11138754, DNA
sequence
Length = 615
Score = 438 bits (221), Expect = e-121
Identities = 264/277 (95%), Gaps = 1/277 (0%)
Strand = Plus / Minus
Query: 129 gatccttcgcttttgggggaaggagaaggcccctctctgtcctctctccatccttgcgga 188
|||||||||||||||||| |||||||||||||||||| ||| ||||||| ||||||||||
Sbjct: 610 gatccttcgcttttgggg-aaggagaaggcccctctcagtcgtctctccgtccttgcgga 552
Query: 189 gggcgctagcaggagcagcggaaggaggaagagatgttcccgcctggcctgatccaccac 248
||||| |||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct: 551 gggcggcagcaggagcagcaggaggaggaagagatgttcccgcctggcctgatccaccac 492
Query: 249 cgccctgacgcccccgttcccggcgatggggcgacacgctccggccccggcgggccgagc 308
||| |||||||||| | |||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 491 cgcgctgacgccccagctcccggcgatggggcgccgcgctccggccccggcgggccgagc 432
Query: 309 cttgtactgacggcggaccccaagcccaggctgcggtggacggccgacctccacgagcgt 368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 cttgtactgacggcggaccccaagcccaggctgcggtggacggccgacctccacgagcgt 372
Query: 369 ttcgtcgacgccgtggcccagctcggcggacccgaga 405
|||||||||||||||||||||||||||||||||||||
Sbjct: 371 ttcgtcgacgccgtggcccagctcggcggacccgaga 335
>gb|CW145990.1|CW145990 104_538_11138754_116_34977_067 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11138754, DNA
sequence
Length = 650
Score = 180 bits (91), Expect = 1e-043
Identities = 118/127 (92%)
Strand = Plus / Plus
Query: 67 ggcagaagcaagaaccagcaagaaaggggagagagaaagcggaaggactttttctcggat 126
|||||||||||||||||||||||||||||||||||||||| || | |||||| |||||||
Sbjct: 520 ggcagaagcaagaaccagcaagaaaggggagagagaaagccgaggaacttttcctcggat 579
Query: 127 tggatccttcgcttttgggggaaggagaaggcccctctctgtcctctctccatccttgcg 186
||||||||||||||||||||||||||||| | ||||||| ||| ||||||| ||||||||
Sbjct: 580 tggatccttcgcttttgggggaaggagaaaggccctctcagtcgtctctccgtccttgcg 639
Query: 187 gagggcg 193
|||||||
Sbjct: 640 gagggcg 646
Score = 50.1 bits (25), Expect = 4e-004
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 32 gaatcgctgccagtggaaagcggca 56
|||||||||||||||||||||||||
Sbjct: 499 gaatcgctgccagtggaaagcggca 523
>gb|CW472319.1|CW472319 fsbb001f227d07f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f227d07, DNA
sequence
Length = 530
Score = 81.8 bits (41), Expect = 1e-013
Identities = 71/81 (87%)
Strand = Plus / Minus
Query: 323 ggaccccaagcccaggctgcggtggacggccgacctccacgagcgtttcgtcgacgccgt 382
|||||||||||| |||||||||||||| ||||||| |||||||| |||||||| |||||
Sbjct: 218 ggaccccaagccgcggctgcggtggacgcccgacctgcacgagcgcttcgtcgaggccgt 159
Query: 383 ggcccagctcggcggacccga 403
|| |||||||||| |||||
Sbjct: 158 caccaagctcggcgggcccga 138
>gb|BF586440.1|BF586440 FM1_28_B10.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 442
Score = 81.8 bits (41), Expect = 1e-013
Identities = 71/81 (87%)
Strand = Plus / Plus
Query: 323 ggaccccaagcccaggctgcggtggacggccgacctccacgagcgtttcgtcgacgccgt 382
|||||||||||| |||||||||||||| ||||||| |||||||| |||||||| |||||
Sbjct: 298 ggaccccaagccgcggctgcggtggacgcccgacctgcacgagcgcttcgtcgaggccgt 357
Query: 383 ggcccagctcggcggacccga 403
|| |||||||||| |||||
Sbjct: 358 caccaagctcggcgggcccga 378
>gb|CW147001.1|CW147001 104_540_11139287_148_34992_094 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11139287, DNA
sequence
Length = 546
Score = 63.9 bits (32), Expect = 2e-008
Identities = 53/60 (88%)
Strand = Plus / Minus
Query: 323 ggaccccaagcccaggctgcggtggacggccgacctccacgagcgtttcgtcgacgccgt 382
|||||||||||| |||||||||||||| | ||||||||| |||| |||||||| |||||
Sbjct: 94 ggaccccaagccgcggctgcggtggacgccggacctccaccagcgcttcgtcgaagccgt 35
>gb|CW297315.1|CW297315 104_779_11461978_116_35637_039 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11461978, DNA
sequence
Length = 668
Score = 63.9 bits (32), Expect = 2e-008
Identities = 53/60 (88%)
Strand = Plus / Plus
Query: 323 ggaccccaagcccaggctgcggtggacggccgacctccacgagcgtttcgtcgacgccgt 382
|||||||||||| |||||||||||||| | ||||||||| |||| |||||||| |||||
Sbjct: 312 ggaccccaagccgcggctgcggtggacgccggacctccaccagcgcttcgtcgaagccgt 371
>gb|CW297316.1|CW297316 104_779_11461978_148_35641_039 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11461978, DNA
sequence
Length = 697
Score = 63.9 bits (32), Expect = 2e-008
Identities = 53/60 (88%)
Strand = Plus / Minus
Query: 323 ggaccccaagcccaggctgcggtggacggccgacctccacgagcgtttcgtcgacgccgt 382
|||||||||||| |||||||||||||| | ||||||||| |||| |||||||| |||||
Sbjct: 476 ggaccccaagccgcggctgcggtggacgccggacctccaccagcgcttcgtcgaagccgt 417
>gb|CW469768.1|CW469768 fsbb001f222k05f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f222k05, DNA
sequence
Length = 658
Score = 63.9 bits (32), Expect = 2e-008
Identities = 53/60 (88%)
Strand = Plus / Minus
Query: 323 ggaccccaagcccaggctgcggtggacggccgacctccacgagcgtttcgtcgacgccgt 382
|||||||||||| |||||||||||||| | ||||||||| |||| |||||||| |||||
Sbjct: 437 ggaccccaagccgcggctgcggtggacgccggacctccaccagcgcttcgtcgaagccgt 378
>gb|CW290318.1|CW290318 104_769_11412947_116_35555_040 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11412947, DNA
sequence
Length = 587
Score = 61.9 bits (31), Expect = 1e-007
Identities = 61/71 (85%)
Strand = Plus / Minus
Query: 324 gaccccaagcccaggctgcggtggacggccgacctccacgagcgtttcgtcgacgccgtg 383
|||||||||||| | || ||||||||| |||| ||||| || || |||||||| |||||
Sbjct: 161 gaccccaagccccgcctccggtggacgcccgagctccatgaccgcttcgtcgatgccgtc 102
Query: 384 gcccagctcgg 394
|||||||||||
Sbjct: 101 gcccagctcgg 91
>gb|CW150436.1|CW150436 104_549_11143025_116_36299_065 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11143025, DNA
sequence
Length = 688
Score = 48.1 bits (24), Expect = 0.001
Identities = 66/80 (82%)
Strand = Plus / Minus
Query: 324 gaccccaagcccaggctgcggtggacggccgacctccacgagcgtttcgtcgacgccgtg 383
|||||||||||| | || || ||||| | ||| ||||| ||||| ||||||||||||||
Sbjct: 165 gaccccaagccccgcctccgctggaccgtcgagctccatgagcgcttcgtcgacgccgtc 106
Query: 384 gcccagctcggcggacccga 403
| |||||||| || |||||
Sbjct: 105 acgcagctcggtggccccga 86
>gb|CW172886.1|CW172886 104_584_11156540_116_36548_076 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11156540, DNA
sequence
Length = 622
Score = 48.1 bits (24), Expect = 0.001
Identities = 66/80 (82%)
Strand = Plus / Plus
Query: 324 gaccccaagcccaggctgcggtggacggccgacctccacgagcgtttcgtcgacgccgtg 383
|||||||||||| | || || ||||| | ||| ||||| ||||| ||||||||||||||
Sbjct: 340 gaccccaagccccgcctccgctggaccgtcgagctccatgagcgcttcgtcgacgccgtc 399
Query: 384 gcccagctcggcggacccga 403
| |||||||| || |||||
Sbjct: 400 acgcagctcggtggccccga 419
>gb|CW284396.1|CW284396 104_761_11409757_116_35489_059 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11409757, DNA
sequence
Length = 699
Score = 48.1 bits (24), Expect = 0.001
Identities = 66/80 (82%)
Strand = Plus / Minus
Query: 324 gaccccaagcccaggctgcggtggacggccgacctccacgagcgtttcgtcgacgccgtg 383
|||||||||||| | || || ||||| | ||| ||||| ||||| ||||||||||||||
Sbjct: 222 gaccccaagccccgcctccgctggaccgtcgagctccatgagcgcttcgtcgacgccgtc 163
Query: 384 gcccagctcggcggacccga 403
| |||||||| || |||||
Sbjct: 162 acgcagctcggtggccccga 143
>gb|CW284397.1|CW284397 104_761_11409757_148_35493_059 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11409757, DNA
sequence
Length = 638
Score = 48.1 bits (24), Expect = 0.001
Identities = 66/80 (82%)
Strand = Plus / Plus
Query: 324 gaccccaagcccaggctgcggtggacggccgacctccacgagcgtttcgtcgacgccgtg 383
|||||||||||| | || || ||||| | ||| ||||| ||||| ||||||||||||||
Sbjct: 482 gaccccaagccccgcctccgctggaccgtcgagctccatgagcgcttcgtcgacgccgtc 541
Query: 384 gcccagctcggcggacccga 403
| |||||||| || |||||
Sbjct: 542 acgcagctcggtggccccga 561
>gb|CW430914.1|CW430914 fsbb001f144n17f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f144n17, DNA
sequence
Length = 791
Score = 44.1 bits (22), Expect = 0.022
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 76 aagaaccagcaagaaaggggagagag 101
||||||||| ||||||||||||||||
Sbjct: 650 aagaaccagaaagaaaggggagagag 675
>gb|CW021125.1|CW021125 104_109_10409361_114_30491 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10409361, DNA
sequence
Length = 672
Score = 42.1 bits (21), Expect = 0.089
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 377 cgccgtggcccagctcggcgg 397
|||||||||||||||||||||
Sbjct: 47 cgccgtggcccagctcggcgg 27
>gb|CW227178.1|CW227178 104_665_11205277_148_37224_055 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11205277, DNA
sequence
Length = 731
Score = 42.1 bits (21), Expect = 0.089
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 357 ctccacgagcgtttcgtcgacgccgtggcccagctcggcgg 397
||||||||||| ||||||||| |||| ||||||||||||
Sbjct: 118 ctccacgagcgcttcgtcgactgcgtgaaccagctcggcgg 78
>gb|CW406294.1|CW406294 fsbb001f099d24f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f099d24, DNA
sequence
Length = 594
Score = 42.1 bits (21), Expect = 0.089
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 377 cgccgtggcccagctcggcgg 397
|||||||||||||||||||||
Sbjct: 454 cgccgtggcccagctcggcgg 434
>gb|BZ629195.1|BZ629195 ih64g06.b1 WGS-SbicolorF (DH5a methyl filtered) Sorghum bicolor
genomic clone ih64g06 5', DNA sequence
Length = 629
Score = 40.1 bits (20), Expect = 0.35
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 86 aagaaaggggagagagaaag 105
||||||||||||||||||||
Sbjct: 532 aagaaaggggagagagaaag 513
>gb|BZ629196.1|BZ629196 ih64g06.g1 WGS-SbicolorF (DH5a methyl filtered) Sorghum bicolor
genomic clone ih64g06 5', DNA sequence
Length = 795
Score = 40.1 bits (20), Expect = 0.35
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 86 aagaaaggggagagagaaag 105
||||||||||||||||||||
Sbjct: 710 aagaaaggggagagagaaag 729
>gb|CW324279.1|CW324279 104_818_11477073_116_35904_035 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11477073, DNA
sequence
Length = 702
Score = 40.1 bits (20), Expect = 0.35
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 86 aagaaaggggagagagaaag 105
||||||||||||||||||||
Sbjct: 386 aagaaaggggagagagaaag 405
>gb|BM318649.1|BM318649 PI1_16_A08.b9_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 503
Score = 40.1 bits (20), Expect = 0.35
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 86 aagaaaggggagagagaaag 105
||||||||||||||||||||
Sbjct: 59 aagaaaggggagagagaaag 40
>gb|CD461842.1|CD461842 SA1_35_B10.g1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_35_B10_A002 5', mRNA sequence
Length = 689
Score = 40.1 bits (20), Expect = 0.35
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 86 aagaaaggggagagagaaag 105
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Sbjct: 44 aagaaaggggagagagaaag 25
>gb|CN126830.1|CN126830 RHOH1_19_A05.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_19_A05_A002 5', mRNA sequence
Length = 767
Score = 40.1 bits (20), Expect = 0.35
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 467 aagagccatcttcagaaatacaga 490
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Sbjct: 476 aagagccatctccagaaatacaga 499
>gb|CX621353.1|CX621353 GABR1_57_D08.g1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_57_D08_A002 5', mRNA sequence
Length = 606
Score = 40.1 bits (20), Expect = 0.35
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 467 aagagccatcttcagaaatacaga 490
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Sbjct: 468 aagagccatctccagaaatacaga 491
>gb|CX621689.1|CX621689 GABR1_59_C11.g1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_59_C11_A002 5', mRNA sequence
Length = 668
Score = 40.1 bits (20), Expect = 0.35
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 467 aagagccatcttcagaaatacaga 490
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Sbjct: 469 aagagccatctccagaaatacaga 492
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 265,569
Number of Sequences: 832831
Number of extensions: 265569
Number of successful extensions: 74564
Number of sequences better than 0.5: 28
Number of HSP's better than 0.5 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 74526
Number of HSP's gapped (non-prelim): 37
length of query: 915
length of database: 491,359,669
effective HSP length: 20
effective length of query: 895
effective length of database: 474,703,049
effective search space: 424859228855
effective search space used: 424859228855
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)