BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 5110719.2.1
(581 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CX618130.1|CX618130 GABR1_37_H02.g1_A002 GA- or brassino... 476 e-132
gb|CN134452.1|CN134452 OX1_26_A10.g1_A002 Oxidatively-stres... 454 e-126
gb|BI246143.1|BI246143 IP1_67_D12.b1_A002 Immature pannicle... 392 e-107
gb|CF489417.1|CF489417 POL1_57_A12.g1_A002 Pollen Sorghum b... 381 e-104
gb|CX613664.1|CX613664 GABR1_9_B04.g1_A002 GA- or brassinol... 299 1e-079
gb|CD224015.1|CD224015 CCC1_31_F06.g1_A007 Callus culture/c... 204 7e-051
gb|CF489337.1|CF489337 POL1_57_A12.b1_A002 Pollen Sorghum b... 204 7e-051
gb|CD424097.1|CD424097 SA1_3_C09.g1_A002 Salicylic acid-tre... 196 2e-048
gb|CD431011.1|CD431011 ETH1_6_E01.b1_A002 Ethylene-treated ... 196 2e-048
gb|BE596022.1|BE596022 PI1_51_C12.g1_A002 Pathogen induced ... 167 1e-039
gb|CF428645.1|CF428645 PH1_9_C06.g1_A002 Phosphorous-defici... 149 3e-034
gb|CD225023.1|CD225023 CCC1_37_C04.g1_A007 Callus culture/c... 145 5e-033
gb|CD206547.1|CD206547 HS1_23_E08.g1_A012 Heat-shocked seed... 137 1e-030
gb|CD205658.1|CD205658 HS1_15_G02.g1_A012 Heat-shocked seed... 125 5e-027
gb|BM318118.1|BM318118 PI1_78_G01.g9_A002 Pathogen induced ... 121 8e-026
gb|CD223993.1|CD223993 CCC1_31_F06.b1_A007 Callus culture/c... 121 8e-026
gb|CD224912.1|CD224912 CCC1_37_C04.b1_A007 Callus culture/c... 121 8e-026
gb|CD424074.1|CD424074 SA1_3_C09.b1_A002 Salicylic acid-tre... 121 8e-026
gb|CN143385.1|CN143385 WOUND1_16_A03.b1_A002 Wounded leaves... 121 8e-026
gb|CF481638.1|CF481638 POL1_73_D08.b1_A002 Pollen Sorghum b... 107 1e-021
gb|CF771391.1|CF771391 DSBF1_18_F09.g1_A010 Drought-stresse... 100 3e-019
gb|CD205631.1|CD205631 HS1_15_G02.b1_A012 Heat-shocked seed... 94 2e-017
gb|CW138504.1|CW138504 104_528_11134732_116_34891_012 Sorgh... 90 3e-016
gb|CW138505.1|CW138505 104_528_11134732_148_34895_012 Sorgh... 90 3e-016
gb|CX614881.1|CX614881 GABR1_16_H08.g1_A002 GA- or brassino... 72 6e-011
gb|BI245585.1|BI245585 IP1_67_D12.g1_A002 Immature pannicle... 62 6e-008
gb|CX618038.1|CX618038 GABR1_37_H02.b1_A002 GA- or brassino... 44 0.014
gb|CL166689.1|CL166689 104_362_10809544_116_31799_376 Sorgh... 42 0.056
gb|CW455587.1|CW455587 fsbb001f200i13f0 Sorghum methylation... 42 0.056
>gb|CX618130.1|CX618130 GABR1_37_H02.g1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_37_H02_A002 5', mRNA sequence
Length = 832
Score = 476 bits (240), Expect = e-132
Identities = 273/284 (96%)
Strand = Plus / Plus
Query: 1 gattaacaatataccatgtaaaaagtcacttgcagaaatacagactagcaaagtatattc 60
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct: 549 gattaacaatataccatgtaaaaagtcacttgcagaaatacaggctagcaaaatatattc 608
Query: 61 ctgatgcttcaactgatgggaacaagaccgataacaaagacccaggagatttgcttgccg 120
||||||||||||||||||| ||||| ||||||||||||||||||| ||||||| |||||
Sbjct: 609 ctgatgcttcaactgatggaaacaaagccgataacaaagacccaggggatttgcatgccg 668
Query: 121 gacttgagggatcctctggattgcagatatctgaagccctcaaactgcagatggaggtcc 180
|||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct: 669 gacttgagggatcctctggattgccgatatctgaagccctcaagctgcagatggaggtcc 728
Query: 181 aaaagcggctgcacgaacagttagaagtacaaaggcagctgcagttacgaattgaggctc 240
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 729 aaaagcggctgcacgaacagttagaagtacaaaggcagctgcagttgcgaattgaggctc 788
Query: 241 agggaaagtacctccagaagatcatcgaagagcagcagcgctta 284
||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 789 agggaaagtacctccagaagatcattgaagagcagcagcgctta 832
>gb|CN134452.1|CN134452 OX1_26_A10.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_26_A10_A002 5', mRNA sequence
Length = 779
Score = 454 bits (229), Expect = e-126
Identities = 256/265 (96%)
Strand = Plus / Plus
Query: 1 gattaacaatataccatgtaaaaagtcacttgcagaaatacagactagcaaagtatattc 60
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct: 512 gattaacaatataccatgtaaaaagtcacttgcagaaatacaggctagcaaaatatattc 571
Query: 61 ctgatgcttcaactgatgggaacaagaccgataacaaagacccaggagatttgcttgccg 120
||||||||||||||||||| ||||| ||||||||||||||||||| |||||||||||||
Sbjct: 572 ctgatgcttcaactgatggaaacaaagccgataacaaagacccaggggatttgcttgccg 631
Query: 121 gacttgagggatcctctggattgcagatatctgaagccctcaaactgcagatggaggtcc 180
|||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct: 632 gacttgagggatcctctggattgccgatatctgaagccctcaagctgcagatggaggtcc 691
Query: 181 aaaagcggctgcacgaacagttagaagtacaaaggcagctgcagttacgaattgaggctc 240
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 692 aaaagcggctgcacgaacagttagaagtacaaaggcagctgcagttgcgaattgaggctc 751
Query: 241 agggaaagtacctccagaagatcat 265
|||||||||||||||||||||||||
Sbjct: 752 agggaaagtacctccagaagatcat 776
>gb|BI246143.1|BI246143 IP1_67_D12.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 489
Score = 392 bits (198), Expect = e-107
Identities = 225/234 (96%)
Strand = Plus / Plus
Query: 1 gattaacaatataccatgtaaaaagtcacttgcagaaatacagactagcaaagtatattc 60
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct: 256 gattaacaatataccatgtaaaaagtcacttgcagaaatacaggctagcaaaatatattc 315
Query: 61 ctgatgcttcaactgatgggaacaagaccgataacaaagacccaggagatttgcttgccg 120
||||||||||||||||||| ||||| ||||||||||||||||||| |||||||||||||
Sbjct: 316 ctgatgcttcaactgatggaaacaaagccgataacaaagacccaggggatttgcttgccg 375
Query: 121 gacttgagggatcctctggattgcagatatctgaagccctcaaactgcagatggaggtcc 180
|||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct: 376 gacttgagggatcctctggattgccgatatctgaagccctcaagctgcagatggaggtcc 435
Query: 181 aaaagcggctgcacgaacagttagaagtacaaaggcagctgcagttacgaattg 234
|||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 436 aaaagcggctgcacgaacagttagaagtacaaaggcagctgcagttgcgaattg 489
>gb|CF489417.1|CF489417 POL1_57_A12.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_57_A12_A002 5', mRNA sequence
Length = 777
Score = 381 bits (192), Expect = e-104
Identities = 216/224 (96%)
Strand = Plus / Plus
Query: 1 gattaacaatataccatgtaaaaagtcacttgcagaaatacagactagcaaagtatattc 60
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct: 554 gattaacaatataccatgtaaaaagtcacttgcagaaatacaggctagcaaaatatattc 613
Query: 61 ctgatgcttcaactgatgggaacaagaccgataacaaagacccaggagatttgcttgccg 120
||||||||||||||||||| ||||| ||||||||||||||||||| |||||||||||||
Sbjct: 614 ctgatgcttcaactgatggaaacaaagccgataacaaagacccaggggatttgcttgccg 673
Query: 121 gacttgagggatcctctggattgcagatatctgaagccctcaaactgcagatggaggtcc 180
|||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct: 674 gacttgagggatcctctggattgccgatatctgaagccctcaagctgcagatggaggtcc 733
Query: 181 aaaagcggctgcacgaacagttagaagtacaaaggcagctgcag 224
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 aaaagcggctgcacgaacagttagaagtacaaaggcagctgcag 777
>gb|CX613664.1|CX613664 GABR1_9_B04.g1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_9_B04_A002 5', mRNA sequence
Length = 724
Score = 299 bits (151), Expect = 1e-079
Identities = 175/183 (95%)
Strand = Plus / Plus
Query: 1 gattaacaatataccatgtaaaaagtcacttgcagaaatacagactagcaaagtatattc 60
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct: 542 gattaacaatataccatgtaaaaagtcacttgcagaaatacaggctagcaaaatatattc 601
Query: 61 ctgatgcttcaactgatgggaacaagaccgataacaaagacccaggagatttgcttgccg 120
||||||||||||||||||| ||||| ||||||||||||||||||| |||||||||||||
Sbjct: 602 ctgatgcttcaactgatggaaacaaagccgataacaaagacccaggggatttgcttgccg 661
Query: 121 gacttgagggatcctctggattgcagatatctgaagccctcaaactgcagatggaggtcc 180
|||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct: 662 gacttgagggatcctctggattgccgatatctgaagccctcaagctgcagatggaggtcc 721
Query: 181 aaa 183
|||
Sbjct: 722 aaa 724
>gb|CD224015.1|CD224015 CCC1_31_F06.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_31_F06_A007 5', mRNA sequence
Length = 685
Score = 204 bits (103), Expect = 7e-051
Identities = 121/127 (95%)
Strand = Plus / Plus
Query: 1 gattaacaatataccatgtaaaaagtcacttgcagaaatacagactagcaaagtatattc 60
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct: 559 gattaacaatataccatgtaaaaagtcacttgcagaaatacaggctagcaaaatatattc 618
Query: 61 ctgatgcttcaactgatgggaacaagaccgataacaaagacccaggagatttgcttgccg 120
||||||||||||||||||| ||||| ||||||||||||||||||| |||||||||||||
Sbjct: 619 ctgatgcttcaactgatggaaacaaagccgataacaaagacccaggggatttgcttgccg 678
Query: 121 gacttga 127
|||||||
Sbjct: 679 gacttga 685
>gb|CF489337.1|CF489337 POL1_57_A12.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_57_A12_A002 3', mRNA sequence
Length = 695
Score = 204 bits (103), Expect = 7e-051
Identities = 130/139 (93%)
Strand = Plus / Plus
Query: 330 gtatcaagtgatcaattcccagactcggagcggactgagccctccacacctgcaccagca 389
|||||||||||||||||||| ||||| ||||||||||||||||| || ||||||||| ||
Sbjct: 2 gtatcaagtgatcaattccctgactccgagcggactgagccctcgactcctgcaccaaca 61
Query: 390 tccgagtctccaactcaagttggtgcttccaatagggacactggagaccgaactgaagca 449
||||||||||||||||||||||||||||||||||||||| | ||||| |||||||||| |
Sbjct: 62 tccgagtctccaactcaagttggtgcttccaatagggaccccggagatcgaactgaagga 121
Query: 450 accaagagcacctgtcatg 468
|||||||||||||||||||
Sbjct: 122 accaagagcacctgtcatg 140
Score = 121 bits (61), Expect = 8e-026
Identities = 85/93 (91%)
Strand = Plus / Plus
Query: 489 gagccactaacccctgattccaactgccagaacggttctcctgtcgctagtccaaaccat 548
|||||||||||||| ||||||||||||||||| || ||||| || |||||||||||||||
Sbjct: 140 gagccactaacccccgattccaactgccagaatggctctcccgttgctagtccaaaccat 199
Query: 549 gaaagggcagccaagaggcagcgaggcagtggt 581
|| |||||||| ||||||||||| |||||||||
Sbjct: 200 gagagggcagcaaagaggcagcggggcagtggt 232
>gb|CD424097.1|CD424097 SA1_3_C09.g1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_3_C09_A002 5', mRNA sequence
Length = 676
Score = 196 bits (99), Expect = 2e-048
Identities = 117/123 (95%)
Strand = Plus / Plus
Query: 1 gattaacaatataccatgtaaaaagtcacttgcagaaatacagactagcaaagtatattc 60
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct: 554 gattaacaatataccatgtaaaaagtcacttgcagaaatacaggctagcaaaatatattc 613
Query: 61 ctgatgcttcaactgatgggaacaagaccgataacaaagacccaggagatttgcttgccg 120
||||||||||||||||||| ||||| ||||||||||||||||||| |||||||||||||
Sbjct: 614 ctgatgcttcaactgatggaaacaaagccgataacaaagacccaggggatttgcttgccg 673
Query: 121 gac 123
|||
Sbjct: 674 gac 676
>gb|CD431011.1|CD431011 ETH1_6_E01.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_6_E01_A002 3', mRNA sequence
Length = 690
Score = 196 bits (99), Expect = 2e-048
Identities = 129/139 (92%)
Strand = Plus / Plus
Query: 330 gtatcaagtgatcaattcccagactcggagcggactgagccctccacacctgcaccagca 389
|||||||||||||||||||| ||||| ||||||||||||||||| || | ||||||| ||
Sbjct: 2 gtatcaagtgatcaattccctgactccgagcggactgagccctcgactcttgcaccaaca 61
Query: 390 tccgagtctccaactcaagttggtgcttccaatagggacactggagaccgaactgaagca 449
||||||||||||||||||||||||||||||||||||||| | ||||| |||||||||| |
Sbjct: 62 tccgagtctccaactcaagttggtgcttccaatagggaccccggagatcgaactgaagga 121
Query: 450 accaagagcacctgtcatg 468
|||||||||||||||||||
Sbjct: 122 accaagagcacctgtcatg 140
Score = 121 bits (61), Expect = 8e-026
Identities = 85/93 (91%)
Strand = Plus / Plus
Query: 489 gagccactaacccctgattccaactgccagaacggttctcctgtcgctagtccaaaccat 548
|||||||||||||| ||||||||||||||||| || ||||| || |||||||||||||||
Sbjct: 140 gagccactaacccccgattccaactgccagaatggctctcccgttgctagtccaaaccat 199
Query: 549 gaaagggcagccaagaggcagcgaggcagtggt 581
|| |||||||| ||||||||||| |||||||||
Sbjct: 200 gagagggcagcaaagaggcagcggggcagtggt 232
>gb|BE596022.1|BE596022 PI1_51_C12.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 627
Score = 167 bits (84), Expect = 1e-039
Identities = 105/112 (93%)
Strand = Plus / Plus
Query: 357 gagcggactgagccctccacacctgcaccagcatccgagtctccaactcaagttggtgct 416
||||||||||||||||| || ||||||||| |||||||||||||||||||||||||||||
Sbjct: 1 gagcggactgagccctcgactcctgcaccaacatccgagtctccaactcaagttggtgct 60
Query: 417 tccaatagggacactggagaccgaactgaagcaaccaagagcacctgtcatg 468
|||||||||||| | ||||| |||||||||| ||||||||||||||||||||
Sbjct: 61 tccaatagggaccccggagatcgaactgaaggaaccaagagcacctgtcatg 112
Score = 121 bits (61), Expect = 8e-026
Identities = 85/93 (91%)
Strand = Plus / Plus
Query: 489 gagccactaacccctgattccaactgccagaacggttctcctgtcgctagtccaaaccat 548
|||||||||||||| ||||||||||||||||| || ||||| || |||||||||||||||
Sbjct: 112 gagccactaacccccgattccaactgccagaatggctctcccgttgctagtccaaaccat 171
Query: 549 gaaagggcagccaagaggcagcgaggcagtggt 581
|| |||||||| ||||||||||| |||||||||
Sbjct: 172 gagagggcagcaaagaggcagcggggcagtggt 204
>gb|CF428645.1|CF428645 PH1_9_C06.g1_A002 Phosphorous-deficient seedlings Sorghum bicolor
cDNA clone PH1_9_C06_A002 5', mRNA sequence
Length = 659
Score = 149 bits (75), Expect = 3e-034
Identities = 90/95 (94%)
Strand = Plus / Plus
Query: 1 gattaacaatataccatgtaaaaagtcacttgcagaaatacagactagcaaagtatattc 60
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct: 565 gattaacaatataccatgtaaaaagtcacttgcagaaatacaggctagcaaaatatattc 624
Query: 61 ctgatgcttcaactgatgggaacaagaccgataac 95
||||||||||||||||||| ||||| ||||||||
Sbjct: 625 ctgatgcttcaactgatggaaacaaagccgataac 659
>gb|CD225023.1|CD225023 CCC1_37_C04.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_37_C04_A007 5', mRNA sequence
Length = 641
Score = 145 bits (73), Expect = 5e-033
Identities = 82/85 (96%)
Strand = Plus / Plus
Query: 1 gattaacaatataccatgtaaaaagtcacttgcagaaatacagactagcaaagtatattc 60
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct: 554 gattaacaatataccatgtaaaaagtcacttgcagaaatacaggctagcaaaatatattc 613
Query: 61 ctgatgcttcaactgatgggaacaa 85
||||||||||||||||||| |||||
Sbjct: 614 ctgatgcttcaactgatggaaacaa 638
>gb|CD206547.1|CD206547 HS1_23_E08.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_23_E08_A012 5', mRNA sequence
Length = 631
Score = 137 bits (69), Expect = 1e-030
Identities = 75/77 (97%)
Strand = Plus / Plus
Query: 1 gattaacaatataccatgtaaaaagtcacttgcagaaatacagactagcaaagtatattc 60
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct: 555 gattaacaatataccatgtaaaaagtcacttgcagaaatacaggctagctaagtatattc 614
Query: 61 ctgatgcttcaactgat 77
|||||||||||||||||
Sbjct: 615 ctgatgcttcaactgat 631
>gb|CD205658.1|CD205658 HS1_15_G02.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_15_G02_A012 5', mRNA sequence
Length = 619
Score = 125 bits (63), Expect = 5e-027
Identities = 66/67 (98%)
Strand = Plus / Plus
Query: 1 gattaacaatataccatgtaaaaagtcacttgcagaaatacagactagcaaagtatattc 60
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 553 gattaacaatataccatgtaaaaagtcacttgcagaaatacaggctagcaaagtatattc 612
Query: 61 ctgatgc 67
|||||||
Sbjct: 613 ctgatgc 619
>gb|BM318118.1|BM318118 PI1_78_G01.g9_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 593
Score = 121 bits (61), Expect = 8e-026
Identities = 85/93 (91%)
Strand = Plus / Plus
Query: 489 gagccactaacccctgattccaactgccagaacggttctcctgtcgctagtccaaaccat 548
|||||||||||||| ||||||||||||||||| || ||||| || |||||||||||||||
Sbjct: 74 gagccactaacccccgattccaactgccagaatggctctcccgttgctagtccaaaccat 133
Query: 549 gaaagggcagccaagaggcagcgaggcagtggt 581
|| |||||||| ||||||||||| |||||||||
Sbjct: 134 gagagggcagcaaagaggcagcggggcagtggt 166
Score = 115 bits (58), Expect = 5e-024
Identities = 70/74 (94%)
Strand = Plus / Plus
Query: 395 gtctccaactcaagttggtgcttccaatagggacactggagaccgaactgaagcaaccaa 454
|||||||||||||||||||||||||||||||||| | ||||| |||||||||| ||||||
Sbjct: 1 gtctccaactcaagttggtgcttccaatagggaccccggagatcgaactgaaggaaccaa 60
Query: 455 gagcacctgtcatg 468
||||||||||||||
Sbjct: 61 gagcacctgtcatg 74
>gb|CD223993.1|CD223993 CCC1_31_F06.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_31_F06_A007 3', mRNA sequence
Length = 641
Score = 121 bits (61), Expect = 8e-026
Identities = 85/93 (91%)
Strand = Plus / Plus
Query: 489 gagccactaacccctgattccaactgccagaacggttctcctgtcgctagtccaaaccat 548
|||||||||||||| ||||||||||||||||| || ||||| || |||||||||||||||
Sbjct: 70 gagccactaacccccgattccaactgccagaatggctctcccgttgctagtccaaaccat 129
Query: 549 gaaagggcagccaagaggcagcgaggcagtggt 581
|| |||||||| ||||||||||| |||||||||
Sbjct: 130 gagagggcagcaaagaggcagcggggcagtggt 162
Score = 107 bits (54), Expect = 1e-021
Identities = 66/70 (94%)
Strand = Plus / Plus
Query: 399 ccaactcaagttggtgcttccaatagggacactggagaccgaactgaagcaaccaagagc 458
|||||||||||||||||||||||||||||| | ||||| |||||||||| ||||||||||
Sbjct: 1 ccaactcaagttggtgcttccaatagggaccccggagatcgaactgaaggaaccaagagc 60
Query: 459 acctgtcatg 468
||||||||||
Sbjct: 61 acctgtcatg 70
>gb|CD224912.1|CD224912 CCC1_37_C04.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_37_C04_A007 3', mRNA sequence
Length = 640
Score = 121 bits (61), Expect = 8e-026
Identities = 85/93 (91%)
Strand = Plus / Plus
Query: 489 gagccactaacccctgattccaactgccagaacggttctcctgtcgctagtccaaaccat 548
|||||||||||||| ||||||||||||||||| || ||||| || |||||||||||||||
Sbjct: 70 gagccactaacccccgattccaactgccagaatggctctcccgttgctagtccaaaccat 129
Query: 549 gaaagggcagccaagaggcagcgaggcagtggt 581
|| |||||||| ||||||||||| |||||||||
Sbjct: 130 gagagggcagcaaagaggcagcggggcagtggt 162
Score = 107 bits (54), Expect = 1e-021
Identities = 66/70 (94%)
Strand = Plus / Plus
Query: 399 ccaactcaagttggtgcttccaatagggacactggagaccgaactgaagcaaccaagagc 458
|||||||||||||||||||||||||||||| | ||||| |||||||||| ||||||||||
Sbjct: 1 ccaactcaagttggtgcttccaatagggaccccggagatcgaactgaaggaaccaagagc 60
Query: 459 acctgtcatg 468
||||||||||
Sbjct: 61 acctgtcatg 70
>gb|CD424074.1|CD424074 SA1_3_C09.b1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_3_C09_A002 3', mRNA sequence
Length = 577
Score = 121 bits (61), Expect = 8e-026
Identities = 85/93 (91%)
Strand = Plus / Plus
Query: 489 gagccactaacccctgattccaactgccagaacggttctcctgtcgctagtccaaaccat 548
|||||||||||||| ||||||||||||||||| || ||||| || |||||||||||||||
Sbjct: 70 gagccactaacccccgattccaactgccagaatggctctcccgttgctagtccaaaccat 129
Query: 549 gaaagggcagccaagaggcagcgaggcagtggt 581
|| |||||||| ||||||||||| |||||||||
Sbjct: 130 gagagggcagcaaagaggcagcggggcagtggt 162
Score = 107 bits (54), Expect = 1e-021
Identities = 66/70 (94%)
Strand = Plus / Plus
Query: 399 ccaactcaagttggtgcttccaatagggacactggagaccgaactgaagcaaccaagagc 458
|||||||||||||||||||||||||||||| | ||||| |||||||||| ||||||||||
Sbjct: 1 ccaactcaagttggtgcttccaatagggaccccggagatcgaactgaaggaaccaagagc 60
Query: 459 acctgtcatg 468
||||||||||
Sbjct: 61 acctgtcatg 70
>gb|CN143385.1|CN143385 WOUND1_16_A03.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_16_A03_A002 3', mRNA sequence
Length = 679
Score = 121 bits (61), Expect = 8e-026
Identities = 85/93 (91%)
Strand = Plus / Plus
Query: 489 gagccactaacccctgattccaactgccagaacggttctcctgtcgctagtccaaaccat 548
|||||||||||||| ||||||||||||||||| || ||||| || |||||||||||||||
Sbjct: 68 gagccactaacccccgattccaactgccagaatggctctcccgttgctagtccaaaccat 127
Query: 549 gaaagggcagccaagaggcagcgaggcagtggt 581
|| |||||||| ||||||||||| |||||||||
Sbjct: 128 gagagggcagcaaagaggcagcggggcagtggt 160
Score = 101 bits (51), Expect = 7e-020
Identities = 63/67 (94%)
Strand = Plus / Plus
Query: 402 actcaagttggtgcttccaatagggacactggagaccgaactgaagcaaccaagagcacc 461
||||||||||||||||||||||||||| | ||||| |||||||||| |||||||||||||
Sbjct: 2 actcaagttggtgcttccaatagggaccccggagatcgaactgaaggaaccaagagcacc 61
Query: 462 tgtcatg 468
|||||||
Sbjct: 62 tgtcatg 68
>gb|CF481638.1|CF481638 POL1_73_D08.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_73_D08_A002 3', mRNA sequence
Length = 619
Score = 107 bits (54), Expect = 1e-021
Identities = 85/94 (90%), Gaps = 1/94 (1%)
Strand = Plus / Plus
Query: 489 gagccactaacccctg-attccaactgccagaacggttctcctgtcgctagtccaaacca 547
|||||||||||||| | |||||||||||||||| || ||||| || ||||||||||||||
Sbjct: 66 gagccactaacccccggattccaactgccagaatggctctcccgttgctagtccaaacca 125
Query: 548 tgaaagggcagccaagaggcagcgaggcagtggt 581
||| |||||||| ||||||||||| |||||||||
Sbjct: 126 tgagagggcagcaaagaggcagcggggcagtggt 159
Score = 99.6 bits (50), Expect = 3e-019
Identities = 62/66 (93%)
Strand = Plus / Plus
Query: 403 ctcaagttggtgcttccaatagggacactggagaccgaactgaagcaaccaagagcacct 462
|||||||||||||||||||||||||| | ||||| |||||||||| ||||||||||||||
Sbjct: 1 ctcaagttggtgcttccaatagggaccccggagatcgaactgaaggaaccaagagcacct 60
Query: 463 gtcatg 468
||||||
Sbjct: 61 gtcatg 66
>gb|CF771391.1|CF771391 DSBF1_18_F09.g1_A010 Drought-stressed before flowering Sorghum
bicolor cDNA clone DSBF1_18_F09_A010 3', mRNA sequence
Length = 610
Score = 99.6 bits (50), Expect = 3e-019
Identities = 71/78 (91%)
Strand = Plus / Plus
Query: 504 gattccaactgccagaacggttctcctgtcgctagtccaaaccatgaaagggcagccaag 563
||||||||||||||||| || ||||| || ||||||||||||||||| |||||||| |||
Sbjct: 2 gattccaactgccagaatggctctcccgttgctagtccaaaccatgagagggcagcaaag 61
Query: 564 aggcagcgaggcagtggt 581
|||||||| |||||||||
Sbjct: 62 aggcagcggggcagtggt 79
>gb|CD205631.1|CD205631 HS1_15_G02.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_15_G02_A012 3', mRNA sequence
Length = 565
Score = 93.7 bits (47), Expect = 2e-017
Identities = 68/75 (90%)
Strand = Plus / Plus
Query: 507 tccaactgccagaacggttctcctgtcgctagtccaaaccatgaaagggcagccaagagg 566
|||||||||||||| || ||||| || ||||||||||||||||| |||||||| ||||||
Sbjct: 1 tccaactgccagaatggctctcccgttgctagtccaaaccatgagagggcagcaaagagg 60
Query: 567 cagcgaggcagtggt 581
||||| |||||||||
Sbjct: 61 cagcggggcagtggt 75
>gb|CW138504.1|CW138504 104_528_11134732_116_34891_012 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11134732, DNA
sequence
Length = 601
Score = 89.7 bits (45), Expect = 3e-016
Identities = 48/49 (97%)
Strand = Plus / Minus
Query: 88 ccgataacaaagacccaggagatttgcttgccggacttgagggatcctc 136
||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 563 ccgataacaaagacccaggggatttgcttgccggacttgagggatcctc 515
>gb|CW138505.1|CW138505 104_528_11134732_148_34895_012 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11134732, DNA
sequence
Length = 736
Score = 89.7 bits (45), Expect = 3e-016
Identities = 48/49 (97%)
Strand = Plus / Plus
Query: 88 ccgataacaaagacccaggagatttgcttgccggacttgagggatcctc 136
||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 226 ccgataacaaagacccaggggatttgcttgccggacttgagggatcctc 274
Score = 77.8 bits (39), Expect = 1e-012
Identities = 45/47 (95%)
Strand = Plus / Plus
Query: 33 cagaaatacagactagcaaagtatattcctgatgcttcaactgatgg 79
||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct: 94 cagaaatacaggctagcaaaatatattcctgatgcttcaactgatgg 140
>gb|CX614881.1|CX614881 GABR1_16_H08.g1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_16_H08_A002 5', mRNA sequence
Length = 577
Score = 71.9 bits (36), Expect = 6e-011
Identities = 36/36 (100%)
Strand = Plus / Plus
Query: 1 gattaacaatataccatgtaaaaagtcacttgcaga 36
||||||||||||||||||||||||||||||||||||
Sbjct: 542 gattaacaatataccatgtaaaaagtcacttgcaga 577
>gb|BI245585.1|BI245585 IP1_67_D12.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 593
Score = 61.9 bits (31), Expect = 6e-008
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 539 tccaaaccatgaaagggcagccaagaggcagcgaggcagtggt 581
|||||||||||| |||||||| ||||||||||| |||||||||
Sbjct: 1 tccaaaccatgagagggcagcaaagaggcagcggggcagtggt 43
>gb|CX618038.1|CX618038 GABR1_37_H02.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_37_H02_A002 3', mRNA sequence
Length = 735
Score = 44.1 bits (22), Expect = 0.014
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 552 agggcagccaagaggcagcgaggcagtggt 581
|||||||| ||||||||||| |||||||||
Sbjct: 5 agggcagcaaagaggcagcggggcagtggt 34
>gb|CL166689.1|CL166689 104_362_10809544_116_31799_376 Sorghum methylation-filtered
library (LibID: 104) Sorghum bicolor genomic clone
10809544, DNA sequence
Length = 690
Score = 42.1 bits (21), Expect = 0.056
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 15 catgtaaaaagtcacttgcag 35
|||||||||||||||||||||
Sbjct: 8 catgtaaaaagtcacttgcag 28
>gb|CW455587.1|CW455587 fsbb001f200i13f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f200i13, DNA
sequence
Length = 630
Score = 42.1 bits (21), Expect = 0.056
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 15 catgtaaaaagtcacttgcag 35
|||||||||||||||||||||
Sbjct: 358 catgtaaaaagtcacttgcag 338
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 136,478
Number of Sequences: 832831
Number of extensions: 136478
Number of successful extensions: 36622
Number of sequences better than 0.5: 29
Number of HSP's better than 0.5 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 36568
Number of HSP's gapped (non-prelim): 53
length of query: 581
length of database: 491,359,669
effective HSP length: 19
effective length of query: 562
effective length of database: 475,535,880
effective search space: 267251164560
effective search space used: 267251164560
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)