BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 4790360.2.1
(667 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BM317408.1|BM317408 LG1_261_H08.g9_A002 Light Grown 1 (L... 720 0.0
gb|BF656938.1|BF656938 OV2_22_H05.g1_A002 Ovary 2 (OV2) Sor... 561 e-158
gb|AW286139.2|AW286139 LG1_261_H08.b1_A002 Light Grown 1 (L... 396 e-108
gb|CW132946.1|CW132946 104_516_11116489_148_34802_007 Sorgh... 392 e-107
gb|CW333022.1|CW333022 104_830_11481721_148_36039_001 Sorgh... 392 e-107
gb|CW150519.1|CW150519 104_551_11143453_116_36307_063 Sorgh... 385 e-105
gb|CW228767.1|CW228767 104_668_11206561_148_37248_001 Sorgh... 313 1e-083
gb|CW150520.1|CW150520 104_551_11143453_148_36308_063 Sorgh... 244 9e-063
gb|BZ336865.1|BZ336865 hz39f11.b1 WGS-SbicolorF (JM107 adap... 240 1e-061
gb|CW477861.1|CW477861 fsbb001f235g16f0 Sorghum methylation... 240 1e-061
gb|CW477862.1|CW477862 fsbb001f235g16k0 Sorghum methylation... 240 1e-061
gb|CW333021.1|CW333021 104_830_11481721_116_36040_001 Sorgh... 214 8e-054
gb|BZ336866.1|BZ336866 hz39f11.g1 WGS-SbicolorF (JM107 adap... 186 2e-045
gb|CW145824.1|CW145824 104_538_11138669_116_34978_023 Sorgh... 176 2e-042
gb|BQ656188.1|BQ656188 pSHR0081 Sorghum halepense rhizome d... 84 2e-014
gb|BQ656189.1|BQ656189 pSHR0082 Sorghum halepense rhizome d... 84 2e-014
gb|CW413562.1|CW413562 fsbb001f112m11f0 Sorghum methylation... 42 0.064
>gb|BM317408.1|BM317408 LG1_261_H08.g9_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 662
Score = 720 bits (363), Expect = 0.0
Identities = 483/519 (93%), Gaps = 3/519 (0%)
Strand = Plus / Plus
Query: 50 tatgggccaatttatgctttatcagctgacgtggtggctagcttggttgcattgcgaaac 109
|||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |||||
Sbjct: 1 tatgggccaatttatgctctatcagctgacgtggtggctagcttggttgctttgagaaac 60
Query: 110 aacagtttccgtatgttcagcaacgaggacgttacaattggatcgtggatgcttgctatg 169
||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||| |||
Sbjct: 61 aacagtttccgtatgtttagcaacgaggatgttacaattggatcttggatgcttgccatg 120
Query: 170 aacgtcaaccatgagaacacacatgcactttgtgaacctgactgcacggagtcttcaatt 229
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct: 121 aacgtcaaccatgagaacacacatgcactttgtgaagctgactgcacggagtcttcagtt 180
Query: 230 gctgtttgggacatcccaaaatgctcaggtctatgccacccagaggtaaaaatgctagag 289
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 181 gctgtttgggacattccaaaatgctcagggctatgccacccagaggtaaaaatgctagag 240
Query: 290 ctccatgaaagaaaagaatgcacaggtggtccaactgtggcagctgaggtgtccgagtct 349
|| ||| |||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct: 241 cttcatcaaagaaaagagtgcacaggtggtccaactgttgcagctgaggtgtccgagtct 300
Query: 350 gaggattgatgatttcttggttggggaacaaactacggatctgatagttgacctgtg-tc 408
||||||||||| |||||||||||| | ||||||||||||||| ||||||||||| || |
Sbjct: 301 gaggattgatgttttcttggttggagcacaaactacggatctcatagttgacctctgccc 360
Query: 409 ctcacccaatagatgtgtttggagtattcatttgattcatcaggcgcaatcattgcggga 468
|||||||| ||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct: 361 ctcacccagtagatgtgtttggagtattcatttgattcatcaggtacaatcattgtggga 420
Query: 469 gcactgctcaaggaacctatagttggctggcgtcgtaacctagcgctgtagcaaaggcat 528
|||| ||| |||||||||||| |||||||||| |||||||| |||||||||||||||
Sbjct: 421 gcaccgctgaaggaacctata-ccggctggcgtcataacctagtactgtagcaaaggcat 479
Query: 529 tctcattc-agcattcttgtcacagcagccttcattgct 566
|||||||| | ||||||||||||||||||||||||||||
Sbjct: 480 tctcattcaaacattcttgtcacagcagccttcattgct 518
>gb|BF656938.1|BF656938 OV2_22_H05.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 547
Score = 561 bits (283), Expect = e-158
Identities = 388/419 (92%), Gaps = 3/419 (0%)
Strand = Plus / Plus
Query: 150 gatcgtggatgcttgctatgaacgtcaaccatgagaacacacatgcactttgtgaacctg 209
|||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 1 gatcttggatgcttgccatgaacgtcaaccatgagaacacacatgcactttgtgaagctg 60
Query: 210 actgcacggagtcttcaattgctgtttgggacatcccaaaatgctcaggtctatgccacc 269
||||||||||||||||| |||||||||||||||| |||||||||||||| ||||||||||
Sbjct: 61 actgcacggagtcttcagttgctgtttgggacattccaaaatgctcagggctatgccacc 120
Query: 270 cagaggtaaaaatgctagagctccatgaaagaaaagaatgcacaggtggtccaactgtgg 329
|||||||||||||||||||||| ||| |||||||||| |||||||||||||||||||| |
Sbjct: 121 cagaggtaaaaatgctagagcttcatcaaagaaaagagtgcacaggtggtccaactgttg 180
Query: 330 cagctgaggtgtccgagtctgaggattgatgatttcttggttggggaacaaactacggat 389
||||||||||||||||||||||||||||||| |||||||||||| | |||||||||||||
Sbjct: 181 cagctgaggtgtccgagtctgaggattgatgttttcttggttggagcacaaactacggat 240
Query: 390 ctgatagttgacctgtg-tcctcacccaatagatgtgtttggagtattcatttgattcat 448
|| ||||||||||| || ||||||||| |||||||||||||||||||||||||||||||
Sbjct: 241 ctcatagttgacctctgcccctcacccagtagatgtgtttggagtattcatttgattcat 300
Query: 449 caggcgcaatcattgcgggagcactgctcaaggaacctatagttggctggcgtcgtaacc 508
|||| ||||||||| |||||||| ||| |||||||||||| |||||||||| |||||
Sbjct: 301 caggtacaatcattgtgggagcaccgctgaaggaacctata-ccggctggcgtcataacc 359
Query: 509 tagcgctgtagcaaaggcattctcattc-agcattcttgtcacagcagccttcattgct 566
||| ||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 360 tagtactgtagcaaaggcattctcattcaaacattcttgtcacagcagccttcattgct 418
>gb|AW286139.2|AW286139 LG1_261_H08.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 452
Score = 396 bits (200), Expect = e-108
Identities = 242/256 (94%)
Strand = Plus / Plus
Query: 3 atgagccccaatcctttttactcggatcacaatacttccttcatgcatatgggccaattt 62
|||||||||||||||| ||||||||||| |||||||||||||||| |||||||||||||
Sbjct: 194 atgagccccaatccttcttactcggatcggaatacttccttcatgcgtatgggccaattt 253
Query: 63 atgctttatcagctgacgtggtggctagcttggttgcattgcgaaacaacagtttccgta 122
||||| ||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct: 254 atgctctatcagctgacgtggtggctagcttggttgctttgagaaacaacagtttccgta 313
Query: 123 tgttcagcaacgaggacgttacaattggatcgtggatgcttgctatgaacgtcaaccatg 182
|||| ||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||
Sbjct: 314 tgtttagcaacgaggatgttacaattggatcttggatgcttgccatgaacgtcaaccatg 373
Query: 183 agaacacacatgcactttgtgaacctgactgcacggagtcttcaattgctgtttgggaca 242
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct: 374 agaacacacatgcactttgtgaagctgactgcacggagtcttcagttgctgtttgggaca 433
Query: 243 tcccaaaatgctcagg 258
| ||||||||||||||
Sbjct: 434 ttccaaaatgctcagg 449
>gb|CW132946.1|CW132946 104_516_11116489_148_34802_007 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11116489, DNA
sequence
Length = 736
Score = 392 bits (198), Expect = e-107
Identities = 288/314 (91%), Gaps = 3/314 (0%)
Strand = Plus / Plus
Query: 255 caggtctatgccacccagaggtaaaaatgctagagctccatgaaagaaaagaatgcacag 314
|||| |||||||||||||||||||||||||||||||| ||| |||||||||| |||||||
Sbjct: 286 cagggctatgccacccagaggtaaaaatgctagagcttcatcaaagaaaagagtgcacag 345
Query: 315 gtggtccaactgtggcagctgaggtgtccgagtctgaggattgatgatttcttggttggg 374
||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 346 gtggtccaactgttgcagctgaggtgtccgagtctgaggattgatgttttcttggttgga 405
Query: 375 gaacaaactacggatctgatagttgacctgtg-tcctcacccaatagatgtgtttggagt 433
| ||||||||||||||| ||||||||||| || ||||||||| ||||||||||||||||
Sbjct: 406 gcacaaactacggatctcatagttgacctctgcccctcacccagtagatgtgtttggagt 465
Query: 434 attcatttgattcatcaggcgcaatcattgcgggagcactgctcaaggaacctatagttg 493
||||||||||||||||||| ||||||||| |||||||| ||| |||||||||||| |
Sbjct: 466 attcatttgattcatcaggtacaatcattgtgggagcaccgctgaaggaacctata-ccg 524
Query: 494 gctggcgtcgtaacctagcgctgtagcaaaggcattctcattc-agcattcttgtcacag 552
||||||||| |||||||| ||||||||||||||||||||||| | ||||||||||||||
Sbjct: 525 gctggcgtcataacctagtactgtagcaaaggcattctcattcaaacattcttgtcacag 584
Query: 553 cagccttcattgct 566
||||||||||||||
Sbjct: 585 cagccttcattgct 598
>gb|CW333022.1|CW333022 104_830_11481721_148_36039_001 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11481721, DNA
sequence
Length = 726
Score = 392 bits (198), Expect = e-107
Identities = 288/314 (91%), Gaps = 3/314 (0%)
Strand = Plus / Plus
Query: 255 caggtctatgccacccagaggtaaaaatgctagagctccatgaaagaaaagaatgcacag 314
|||| |||||||||||||||||||||||||||||||| ||| |||||||||| |||||||
Sbjct: 94 cagggctatgccacccagaggtaaaaatgctagagcttcatcaaagaaaagagtgcacag 153
Query: 315 gtggtccaactgtggcagctgaggtgtccgagtctgaggattgatgatttcttggttggg 374
||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 154 gtggtccaactgttgcagctgaggtgtccgagtctgaggattgatgttttcttggttgga 213
Query: 375 gaacaaactacggatctgatagttgacctgtg-tcctcacccaatagatgtgtttggagt 433
| ||||||||||||||| ||||||||||| || ||||||||| ||||||||||||||||
Sbjct: 214 gcacaaactacggatctcatagttgacctctgcccctcacccagtagatgtgtttggagt 273
Query: 434 attcatttgattcatcaggcgcaatcattgcgggagcactgctcaaggaacctatagttg 493
||||||||||||||||||| ||||||||| |||||||| ||| |||||||||||| |
Sbjct: 274 attcatttgattcatcaggtacaatcattgtgggagcaccgctgaaggaacctata-ccg 332
Query: 494 gctggcgtcgtaacctagcgctgtagcaaaggcattctcattc-agcattcttgtcacag 552
||||||||| |||||||| ||||||||||||||||||||||| | ||||||||||||||
Sbjct: 333 gctggcgtcataacctagtactgtagcaaaggcattctcattcaaacattcttgtcacag 392
Query: 553 cagccttcattgct 566
||||||||||||||
Sbjct: 393 cagccttcattgct 406
>gb|CW150519.1|CW150519 104_551_11143453_116_36307_063 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11143453, DNA
sequence
Length = 625
Score = 385 bits (194), Expect = e-105
Identities = 287/314 (91%), Gaps = 3/314 (0%)
Strand = Plus / Minus
Query: 255 caggtctatgccacccagaggtaaaaatgctagagctccatgaaagaaaagaatgcacag 314
|||| |||||||||||||||||||||||||||||||| ||| |||||||||| |||||||
Sbjct: 319 cagggctatgccacccagaggtaaaaatgctagagcttcatcaaagaaaagagtgcacag 260
Query: 315 gtggtccaactgtggcagctgaggtgtccgagtctgaggattgatgatttcttggttggg 374
||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 259 gtggtccaactgttgcagctgaggtgtccgagtctgaggattgatgttttcttggttgga 200
Query: 375 gaacaaactacggatctgatagttgacctgtg-tcctcacccaatagatgtgtttggagt 433
| ||||||||||||||| ||||||||||| || ||||||||| ||||||||||||||||
Sbjct: 199 gcacaaactacggatctcatagttgacctctgcccctcacccagtagatgtgtttggagt 140
Query: 434 attcatttgattcatcaggcgcaatcattgcgggagcactgctcaaggaacctatagttg 493
||||||||||||||||||| ||||||||| |||||||| ||| |||||||||||| |
Sbjct: 139 attcatttgattcatcaggtacaatcattgtgggagcaccgctgaaggaacctata-ccg 81
Query: 494 gctggcgtcgtaacctagcgctgtagcaaaggcattctcattc-agcattcttgtcacag 552
|| |||||| |||||||| ||||||||||||||||||||||| | ||||||||||||||
Sbjct: 80 gcgggcgtcataacctagtactgtagcaaaggcattctcattcaaacattcttgtcacag 21
Query: 553 cagccttcattgct 566
||||||||||||||
Sbjct: 20 cagccttcattgct 7
>gb|CW228767.1|CW228767 104_668_11206561_148_37248_001 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11206561, DNA
sequence
Length = 291
Score = 313 bits (158), Expect = 1e-083
Identities = 236/258 (91%), Gaps = 3/258 (1%)
Strand = Plus / Plus
Query: 311 acaggtggtccaactgtggcagctgaggtgtccgagtctgaggattgatgatttcttggt 370
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct: 1 acaggtggtccaactgttgcagctgaggtgtccgagtctgaggattgatgttttcttggt 60
Query: 371 tggggaacaaactacggatctgatagttgacctgtg-tcctcacccaatagatgtgtttg 429
||| | ||||||||||||||| ||||||||||| || ||||||||| ||||||||||||
Sbjct: 61 tggagcacaaactacggatctcatagttgacctctgcccctcacccagtagatgtgtttg 120
Query: 430 gagtattcatttgattcatcaggcgcaatcattgcgggagcactgctcaaggaacctata 489
||||||||||||||||||||||| ||||||||| |||||||| ||| ||||||||||||
Sbjct: 121 gagtattcatttgattcatcaggtacaatcattgtgggagcaccgctgaaggaacctata 180
Query: 490 gttggctggcgtcgtaacctagcgctgtagcaaaggcattctcattc-agcattcttgtc 548
|||||||||| |||||||| ||||||||||||||||||||||| | ||||||||||
Sbjct: 181 -ccggctggcgtcataacctagtactgtagcaaaggcattctcattcaaacattcttgtc 239
Query: 549 acagcagccttcattgct 566
||||||||||||||||||
Sbjct: 240 acagcagccttcattgct 257
>gb|CW150520.1|CW150520 104_551_11143453_148_36308_063 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11143453, DNA
sequence
Length = 557
Score = 244 bits (123), Expect = 9e-063
Identities = 141/147 (95%)
Strand = Plus / Plus
Query: 112 cagtttccgtatgttcagcaacgaggacgttacaattggatcgtggatgcttgctatgaa 171
||||||||||||||| ||||||||||| |||||||||||||| ||||||||||| |||||
Sbjct: 285 cagtttccgtatgtttagcaacgaggatgttacaattggatcttggatgcttgccatgaa 344
Query: 172 cgtcaaccatgagaacacacatgcactttgtgaacctgactgcacggagtcttcaattgc 231
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 345 cgtcaaccatgagaacacacatgcactttgtgaagctgactgcacggagtcttcaattgc 404
Query: 232 tgtttgggacatcccaaaatgctcagg 258
|||||||||||| ||||||||||||||
Sbjct: 405 tgtttgggacattccaaaatgctcagg 431
>gb|BZ336865.1|BZ336865 hz39f11.b1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone hz39f11 5', DNA sequence
Length = 716
Score = 240 bits (121), Expect = 1e-061
Identities = 142/149 (95%)
Strand = Plus / Minus
Query: 112 cagtttccgtatgttcagcaacgaggacgttacaattggatcgtggatgcttgctatgaa 171
||||||||||||||| ||||||||||| |||||||||||||| ||||||||||| |||||
Sbjct: 615 cagtttccgtatgtttagcaacgaggatgttacaattggatcttggatgcttgccatgaa 556
Query: 172 cgtcaaccatgagaacacacatgcactttgtgaacctgactgcacggagtcttcaattgc 231
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct: 555 cgtcaaccatgagaacacacatgcactttgtgaagctgactgcacggagtcttcagttgc 496
Query: 232 tgtttgggacatcccaaaatgctcaggtc 260
|||||||||||| ||||||||||||||||
Sbjct: 495 tgtttgggacattccaaaatgctcaggtc 467
Score = 137 bits (69), Expect = 1e-030
Identities = 88/93 (94%), Gaps = 1/93 (1%)
Strand = Plus / Minus
Query: 255 caggtctatgccacccagaggtaaaaatgctagagctccatgaaagaaaagaatgcacag 314
|||| |||||||||||||||||||||||||||||||| ||| |||||||||| |||||||
Sbjct: 92 cagggctatgccacccagaggtaaaaatgctagagcttcatcaaagaaaagagtgcacag 33
Query: 315 gtggtccaactgtggcagctgaggtgtccgagt 347
|||||||||||||||||||||||| ||||||||
Sbjct: 32 gtggtccaactgtggcagctgagg-gtccgagt 1
>gb|CW477861.1|CW477861 fsbb001f235g16f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f235g16, DNA
sequence
Length = 752
Score = 240 bits (121), Expect = 1e-061
Identities = 142/149 (95%)
Strand = Plus / Plus
Query: 112 cagtttccgtatgttcagcaacgaggacgttacaattggatcgtggatgcttgctatgaa 171
||||||||||||||| ||||||||||| |||||||||||||| ||||||||||| |||||
Sbjct: 510 cagtttccgtatgtttagcaacgaggatgttacaattggatcttggatgcttgccatgaa 569
Query: 172 cgtcaaccatgagaacacacatgcactttgtgaacctgactgcacggagtcttcaattgc 231
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct: 570 cgtcaaccatgagaacacacatgcactttgtgaagctgactgcacggagtcttcagttgc 629
Query: 232 tgtttgggacatcccaaaatgctcaggtc 260
|||||||||||| ||||||||||||||||
Sbjct: 630 tgtttgggacattccaaaatgctcaggtc 658
>gb|CW477862.1|CW477862 fsbb001f235g16k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f235g16, DNA
sequence
Length = 751
Score = 240 bits (121), Expect = 1e-061
Identities = 142/149 (95%)
Strand = Plus / Minus
Query: 112 cagtttccgtatgttcagcaacgaggacgttacaattggatcgtggatgcttgctatgaa 171
||||||||||||||| ||||||||||| |||||||||||||| ||||||||||| |||||
Sbjct: 329 cagtttccgtatgtttagcaacgaggatgttacaattggatcttggatgcttgccatgaa 270
Query: 172 cgtcaaccatgagaacacacatgcactttgtgaacctgactgcacggagtcttcaattgc 231
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct: 269 cgtcaaccatgagaacacacatgcactttgtgaagctgactgcacggagtcttcagttgc 210
Query: 232 tgtttgggacatcccaaaatgctcaggtc 260
|||||||||||| ||||||||||||||||
Sbjct: 209 tgtttgggacattccaaaatgctcaggtc 181
>gb|CW333021.1|CW333021 104_830_11481721_116_36040_001 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11481721, DNA
sequence
Length = 711
Score = 214 bits (108), Expect = 8e-054
Identities = 174/192 (90%), Gaps = 3/192 (1%)
Strand = Plus / Minus
Query: 377 acaaactacggatctgatagttgacctgtgtcc-tcacccaatagatgtgtttggagtat 435
||||||||||||||| ||||||||||| || || ||||||| ||||||||||||||||||
Sbjct: 705 acaaactacggatctcatagttgacctctgcccctcacccagtagatgtgtttggagtat 646
Query: 436 tcatttgattcatcaggcgcaatcattgcgggagcactgctcaaggaacctatagttggc 495
||||||||||||||||| ||||||||| |||||||| ||| |||||||||||| |||
Sbjct: 645 tcatttgattcatcaggtacaatcattgtgggagcaccgctgaaggaacctata-ccggc 587
Query: 496 tggcgtcgtaacctagcgctgtagcaaaggcattctcattc-agcattcttgtcacagca 554
||||||| |||||||| ||||||||||||||||||||||| | ||||||||||||||||
Sbjct: 586 tggcgtcataacctagtactgtagcaaaggcattctcattcaaacattcttgtcacagca 527
Query: 555 gccttcattgct 566
||||||||||||
Sbjct: 526 gccttcattgct 515
>gb|BZ336866.1|BZ336866 hz39f11.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone hz39f11 5', DNA sequence
Length = 627
Score = 186 bits (94), Expect = 2e-045
Identities = 109/114 (95%)
Strand = Plus / Plus
Query: 112 cagtttccgtatgttcagcaacgaggacgttacaattggatcgtggatgcttgctatgaa 171
||||||||||||||| ||||||||||| |||||||||||||| ||||||||||| |||||
Sbjct: 514 cagtttccgtatgtttagcaacgaggatgttacaattggatcttggatgcttgccatgaa 573
Query: 172 cgtcaaccatgagaacacacatgcactttgtgaacctgactgcacggagtcttc 225
|||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 574 cgtcaaccatgagaacacacatgcactttgtgaagctgactgcacggagtcttc 627
>gb|CW145824.1|CW145824 104_538_11138669_116_34978_023 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11138669, DNA
sequence
Length = 709
Score = 176 bits (89), Expect = 2e-042
Identities = 136/149 (91%), Gaps = 2/149 (1%)
Strand = Plus / Plus
Query: 419 agatgtgtttggagtattcatttgattcatcaggcgcaatcattgcgggagcactgctca 478
|||||||||||||||||||||||||||||||||| ||||||||| |||||||| ||| |
Sbjct: 1 agatgtgtttggagtattcatttgattcatcaggtacaatcattgtgggagcaccgctga 60
Query: 479 aggaacctatagttggctggcgtcgtaacctagcgctgtagcaaaggcattctcattc-a 537
||||||||||| |||||||||| |||||||| ||||||||||||||||||||||| |
Sbjct: 61 aggaacctata-ccggctggcgtcataacctagtactgtagcaaaggcattctcattcaa 119
Query: 538 gcattcttgtcacagcagccttcattgct 566
||||||||||||||||||||||||||||
Sbjct: 120 acattcttgtcacagcagccttcattgct 148
>gb|BQ656188.1|BQ656188 pSHR0081 Sorghum halepense rhizome differential display library
Sorghum halepense cDNA clone pSHR0081, mRNA sequence
Length = 266
Score = 83.8 bits (42), Expect = 2e-014
Identities = 52/54 (96%), Gaps = 1/54 (1%)
Strand = Plus / Plus
Query: 514 ctgtagcaaaggcattctcattcag-cattcttgtcacagcagccttcattgct 566
|||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 15 ctgtagcaaaggcattctcattcaaacattcttgtcacagcagccttcattgct 68
>gb|BQ656189.1|BQ656189 pSHR0082 Sorghum halepense rhizome differential display library
Sorghum halepense cDNA clone pSHR0082, mRNA sequence
Length = 254
Score = 83.8 bits (42), Expect = 2e-014
Identities = 52/54 (96%), Gaps = 1/54 (1%)
Strand = Plus / Minus
Query: 514 ctgtagcaaaggcattctcattcag-cattcttgtcacagcagccttcattgct 566
|||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 240 ctgtagcaaaggcattctcattcaaacattcttgtcacagcagccttcattgct 187
>gb|CW413562.1|CW413562 fsbb001f112m11f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f112m11, DNA
sequence
Length = 680
Score = 42.1 bits (21), Expect = 0.064
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 263 tgccacccagaggtaaaaatg 283
|||||||||||||||||||||
Sbjct: 366 tgccacccagaggtaaaaatg 386
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 167,118
Number of Sequences: 832831
Number of extensions: 167118
Number of successful extensions: 43964
Number of sequences better than 0.5: 17
Number of HSP's better than 0.5 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 43904
Number of HSP's gapped (non-prelim): 35
length of query: 667
length of database: 491,359,669
effective HSP length: 19
effective length of query: 648
effective length of database: 475,535,880
effective search space: 308147250240
effective search space used: 308147250240
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)