BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 4424526.2.1
(1446 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CX608425.1|CX608425 ANR1_38_C03.g1_A002 Anaerobic roots ... 706 0.0
gb|CX611172.1|CX611172 ANR1_23_C03.b1_A002 Anaerobic roots ... 688 0.0
gb|BG356912.1|BG356912 OV2_11_E10.g1_A002 Ovary 2 (OV2) Sor... 678 0.0
gb|CD231921.1|CD231921 SS1_30_E07.g1_A012 Salt-stressed see... 674 0.0
gb|CX608344.1|CX608344 ANR1_38_C03.b1_A002 Anaerobic roots ... 609 e-172
gb|BG357242.1|BG357242 OV2_11_E10.b1_A002 Ovary 2 (OV2) Sor... 605 e-171
gb|BG054078.1|BG054078 OV2_3_B08.g1_A002 Ovary 2 (OV2) Sorg... 603 e-170
gb|CW229208.1|CW229208 104_670_11207182_116_37262_089 Sorgh... 595 e-168
gb|BF317701.1|BF317701 OV1_12_C03.g1_A002 Ovary 1 (OV1) Sor... 515 e-144
gb|BG356656.1|BG356656 OV2_26_B11.g1_A002 Ovary 2 (OV2) Sor... 515 e-144
gb|CN137974.1|CN137974 OX1_61_A09.b1_A002 Oxidatively-stres... 502 e-140
gb|BF317700.1|BF317700 OV1_12_C02.g1_A002 Ovary 1 (OV1) Sor... 450 e-124
gb|CW241116.1|CW241116 104_700_11218590_148_37543_029 Sorgh... 438 e-121
gb|BG273478.1|BG273478 OV2_26_B11.b1_A002 Ovary 2 (OV2) Sor... 402 e-110
gb|CW030845.1|CW030845 104_259_10500460_114_30397 Sorghum m... 400 e-109
gb|CW032781.1|CW032781 104_262_10501588_114_30361 Sorghum m... 400 e-109
gb|CW084941.1|CW084941 104_428_10946101_114_32560_063 Sorgh... 400 e-109
gb|CW318975.1|CW318975 104_811_11474241_148_35884_041 Sorgh... 387 e-105
gb|BF420874.1|BF420874 OV1_12_C02.b1_A002 Ovary 1 (OV1) Sor... 385 e-105
gb|CW241115.1|CW241115 104_700_11218590_116_37544_029 Sorgh... 323 3e-086
gb|CW084107.1|CW084107 104_426_10945580_114_32377_070 Sorgh... 274 2e-071
gb|CW121610.1|CW121610 104_499_11109998_148_34658_053 Sorgh... 274 2e-071
gb|CW232476.1|CW232476 104_685_11212837_148_37366_061 Sorgh... 274 2e-071
gb|CW034107.1|CW034107 104_264_10502356_114_30358 Sorghum m... 242 8e-062
gb|CW084108.1|CW084108 104_426_10945580_116_32441_070 Sorgh... 224 2e-056
gb|CW232475.1|CW232475 104_685_11212837_116_37365_061 Sorgh... 224 2e-056
gb|CW235239.1|CW235239 104_690_11214876_116_37408_040 Sorgh... 224 2e-056
gb|CW279063.1|CW279063 104_753_11406880_148_35430_052 Sorgh... 224 2e-056
gb|CW494632.1|CW494632 fsbb001f286a08f0 Sorghum methylation... 224 2e-056
gb|BG054346.1|BG054346 OV2_3_B08.b1_A002 Ovary 2 (OV2) Sorg... 212 7e-053
gb|CW121609.1|CW121609 104_499_11109998_116_34662_053 Sorgh... 190 2e-046
gb|CW235240.1|CW235240 104_690_11214876_148_37412_040 Sorgh... 190 2e-046
gb|BF420875.1|BF420875 OV1_12_C03.b1_A002 Ovary 1 (OV1) Sor... 180 2e-043
gb|CW279062.1|CW279062 104_753_11406880_116_35426_052 Sorgh... 170 2e-040
gb|CD235299.1|CD235299 SS1_28_E07.g1_A012 Salt-stressed see... 161 2e-037
gb|CN138061.1|CN138061 OX1_61_A09.g1_A002 Oxidatively-stres... 161 2e-037
gb|AI724666.1|AI724666 RHIZ1_11_E03.y1_A001 Rhizome1 (RHIZ1... 155 1e-035
gb|BG487576.1|BG487576 EM1_67_G03.b1_A002 Embryo 1 (EM1) So... 101 2e-019
gb|CW030831.1|CW030831 104_259_10500451_114_30397 Sorghum m... 68 2e-009
gb|CW229209.1|CW229209 104_670_11207182_148_37261_089 Sorgh... 68 2e-009
gb|CW232918.1|CW232918 104_685_11213076_148_37425_036 Sorgh... 68 2e-009
gb|CW237023.1|CW237023 104_693_11215938_116_37513_075 Sorgh... 68 2e-009
gb|CW237024.1|CW237024 104_693_11215938_148_37518_075 Sorgh... 68 2e-009
gb|CW318434.1|CW318434 104_810_11473947_148_35869_006 Sorgh... 68 2e-009
gb|CW321644.1|CW321644 104_815_11475664_148_35941_062 Sorgh... 68 2e-009
gb|CW486271.1|CW486271 fsbb001f249g24k0 Sorghum methylation... 68 2e-009
gb|CW305273.1|CW305273 104_790_11466229_116_37439_055 Sorgh... 54 4e-005
gb|CW305274.1|CW305274 104_790_11466229_148_37440_055 Sorgh... 54 4e-005
gb|CW344473.1|CW344473 104_847_11487972_116_36204_046 Sorgh... 50 6e-004
gb|CW344474.1|CW344474 104_847_11487972_148_36203_046 Sorgh... 50 6e-004
gb|CW069980.1|CW069980 104_320_10526361_1_30089 Sorghum met... 48 0.002
gb|CW122336.1|CW122336 104_501_11110601_148_34675_077 Sorgh... 48 0.002
gb|CW250690.1|CW250690 104_713_11223528_116_35063_096 Sorgh... 48 0.002
gb|CD425348.1|CD425348 SA1_11_G07.g1_A002 Salicylic acid-tr... 46 0.009
gb|CW450184.1|CW450184 fsbb001f188l06f0 Sorghum methylation... 44 0.036
gb|BE356707.1|BE356707 DG1_12_E08.b1_A002 Dark Grown 1 (DG1... 44 0.036
gb|BE362389.1|BE362389 DG1_86_G06.b1_A002 Dark Grown 1 (DG1... 44 0.036
gb|BE362745.1|BE362745 DG1_89_A06.b1_A002 Dark Grown 1 (DG1... 44 0.036
gb|BE594253.1|BE594253 WS1_104_B07.b1_A002 Water-stressed 1... 44 0.036
gb|BE596683.1|BE596683 PI1_58_C11.b1_A002 Pathogen induced ... 44 0.036
gb|BE596684.1|BE596684 PI1_58_C12.b1_A002 Pathogen induced ... 44 0.036
gb|BM318563.1|BM318563 PI1_15_A07.b9_A002 Pathogen induced ... 44 0.036
gb|BM326480.1|BM326480 PIC1_57_E11.b1_A002 Pathogen-infecte... 44 0.036
gb|CB924468.1|CB924468 ABA1_21_B09.b1_A012 Abscisic acid-tr... 44 0.036
gb|CD429828.1|CD429828 ETH1_15_D02.g1_A002 Ethylene-treated... 44 0.036
gb|CD432670.1|CD432670 ETH1_25_A11.g1_A002 Ethylene-treated... 44 0.036
gb|CN130191.1|CN130191 RHOH1_39_H05.g1_A002 Acid- and alkal... 44 0.036
gb|CN135696.1|CN135696 OX1_38_A08.g1_A002 Oxidatively-stres... 44 0.036
gb|BZ342068.1|BZ342068 ic80d01.g1 WGS-SbicolorF (JM107 adap... 42 0.14
gb|CW034793.1|CW034793 104_265_10502772_114_30378 Sorghum m... 42 0.14
gb|CW302218.1|CW302218 104_786_11464606_148_35669_091 Sorgh... 42 0.14
gb|CN137170.1|CN137170 OX1_55_C12.g1_A002 Oxidatively-stres... 42 0.14
gb|CX608544.1|CX608544 ANR1_39_E12.b1_A002 Anaerobic roots ... 42 0.14
>gb|CX608425.1|CX608425 ANR1_38_C03.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_38_C03_A002 5', mRNA sequence
Length = 582
Score = 706 bits (356), Expect = 0.0
Identities = 470/508 (92%)
Strand = Plus / Minus
Query: 911 aggacctgcccgaccttggggaggccgaagcccgcgaagaagccggccacggcgtaggtg 970
|||| ||||||||| |||||||| || | ||||||||| |||| |||| |||||| |||
Sbjct: 581 aggagctgcccgacgttggggagcgcgtaccccgcgaagtagcccgccagggcgtacgtg 522
Query: 971 tagggtatgcccgcggcctcggtggcgcggcggatgcccaccttggcgcctaggatggac 1030
||||| ||||||||||||||||||||||| ||||||||||||||| || | ||||| |||
Sbjct: 521 taggggatgcccgcggcctcggtggcgcgccggatgcccaccttgccggcgaggatcgac 462
Query: 1031 ttggccggctccacgatgcccgtgcggtccacgtccaggccgaactccgacgggaagaac 1090
||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 ttgcccggctccacgatccccgtgcggtccacgtccaggccgaactccgacgggaagaac 402
Query: 1091 ctcttgacgtttccggcctccttgatggcgtcgacgagccggctctggtcggcgatctgc 1150
||||||||||| |||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct: 401 ctcttgacgttgccggcctccttgatggcgtcgatgagccgggtctggtcggcgatctgc 342
Query: 1151 atcgatccgagcacggagatgaccacgtccgcgcccttcaccgcgctcaccaggctagcc 1210
| ||| |||||| ||||||||||||||| ||||||||||| ||||| || |||||||||
Sbjct: 341 agcgacccgagcgtggagatgaccacgtcggcgcccttcacggcgctgacaaggctagcc 282
Query: 1211 tggtcgtacaggtcgcccttgaggagcgtcacgccggcgtcctggaagctcttgagcagc 1270
|||||||| ||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct: 281 tggtcgtagaggtcgcccttgacgagcgtcacgccggcgtcctggaagctctggagcagc 222
Query: 1271 gccgctttggccgggtcggacggcgccgtgtccctgacgagcgccgaggtggggtggccc 1330
||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct: 221 gccgccttggccgggtcggagggcgccgtgtccctgacgagcgcgacggtggggtggccc 162
Query: 1331 agccgcgcgctcgccgccacgacgtgcctgcccaggtaccccgtgccgccgaccaccagg 1390
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 161 agccgcgcgctcgccgccacgacgtgccggcccaggtaccccgtgccgccgaccaccagg 102
Query: 1391 atcttgctcttctccgacgccatctatc 1418
||||||||||||||||||||||||||||
Sbjct: 101 atcttgctcttctccgacgccatctatc 74
>gb|CX611172.1|CX611172 ANR1_23_C03.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_23_C03_A002 3', mRNA sequence
Length = 701
Score = 688 bits (347), Expect = 0.0
Identities = 449/483 (92%)
Strand = Plus / Minus
Query: 484 tcagagaaagcggttgaggtactcgtcgacggtggtgtacttgacatccgggtacagttc 543
|||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct: 485 tcagaggaagcggttcaggtactcgtcgacggtggtgtacttgacgtccgggtacagctc 426
Query: 544 gctggcgtccacccccttggccgggtcgatctcgaagcccgtctgctccccacgcacgaa 603
| |||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |
Sbjct: 425 ggtggcgtccaccctcttggccgggtcgatctcgaagcccgtctgctccccccgcacgta 366
Query: 604 cgccgcgtgcccgatcgccaggatgatgttcagagggatcggcgactcttggatctgctt 663
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 365 cgccgcgtgcccgatcgccaggatgatgttcagcgggatcggcgactcttggatctgctt 306
Query: 664 gagcacggcttcctccggcacgtactcccgccggaacgtcttgccggtcttcttctccca 723
||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 305 gagcacggcttcctcaggcacgtactcccgctggaacgtcttgccggtcttcttctccca 246
Query: 724 cagcgacagcagctcgttgtgcgacagcgtgttggccggcggcttgatgtacagcacctt 783
|||||||||||||||||||||||||||||||||||| || ||||||||||||||| |||
Sbjct: 245 cagcgacagcagctcgttgtgcgacagcgtgttggcggggggcttgatgtacagcgtctt 186
Query: 784 gttctccgcgcgcgggtcgtcggccgccagcaccgtgtacgtggcgatgtcgccctcctc 843
|||||| ||||||||||||||||| ||||||||||||||||| ||||||| ||||||||
Sbjct: 185 gttctcggcgcgcgggtcgtcggcggccagcaccgtgtacgtcccgatgtccccctcctc 126
Query: 844 cacgaacaccgccttggtgtcgccgtcgccgaggacgaccgccttgtccgcgggcgggcc 903
|||||||||| ||||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct: 125 cacgaacaccaccttggtgtcgccgtcgccgaggaccaccgccttgtccgtgggcgggcc 66
Query: 904 gggggcgaggacctgcccgaccttggggaggccgaagcccgcgaagaagccggccacggc 963
||| || |||| ||||||||| |||||||| || | ||||||||| |||| |||| |||
Sbjct: 65 gggcgccaggagctgcccgacgttggggagcgcgtaccccgcgaagtagcccgccagggc 6
Query: 964 gta 966
|||
Sbjct: 5 gta 3
>gb|BG356912.1|BG356912 OV2_11_E10.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 647
Score = 678 bits (342), Expect = 0.0
Identities = 423/450 (94%)
Strand = Plus / Minus
Query: 484 tcagagaaagcggttgaggtactcgtcgacggtggtgtacttgacatccgggtacagttc 543
|||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct: 463 tcagaggaagcggttcaggtactcgtcgacggtggtgtacttgacgtccgggtacagctc 404
Query: 544 gctggcgtccacccccttggccgggtcgatctcgaagcccgtctgctccccacgcacgaa 603
| |||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |
Sbjct: 403 ggtggcgtccaccctcttggccgggtcgatctcgaagcccgtctgctccccccgcacgta 344
Query: 604 cgccgcgtgcccgatcgccaggatgatgttcagagggatcggcgactcttggatctgctt 663
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 343 cgccgcgtgcccgatcgccaggatgatgttcagcgggatcggcgactcttggatctgctt 284
Query: 664 gagcacggcttcctccggcacgtactcccgccggaacgtcttgccggtcttcttctccca 723
||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 283 gagcacggcttcctcaggcacgtactcccgctggaacgtcttgccggtcttcttctccca 224
Query: 724 cagcgacagcagctcgttgtgcgacagcgtgttggccggcggcttgatgtacagcacctt 783
|||||||||||||||||||||||||||||||||||| || ||||||||||||||| |||
Sbjct: 223 cagcgacagcagctcgttgtgcgacagcgtgttggcggggggcttgatgtacagcgtctt 164
Query: 784 gttctccgcgcgcgggtcgtcggccgccagcaccgtgtacgtggcgatgtcgccctcctc 843
|||||| ||||||||||||||||| ||||||||||||||||| ||||||| ||||||||
Sbjct: 163 gttctcggcgcgcgggtcgtcggcggccagcaccgtgtacgtcccgatgtccccctcctc 104
Query: 844 cacgaacaccgccttggtgtcgccgtcgccgaggacgaccgccttgtccgcgggcgggcc 903
|||||||||| ||||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct: 103 cacgaacaccaccttggtgtcgccgtcgccgaggaccaccgccttgtccgtgggcgggcc 44
Query: 904 gggggcgaggacctgcccgaccttggggag 933
||| || |||| ||||||||| ||||||||
Sbjct: 43 gggcgccaggagctgcccgacgttggggag 14
>gb|CD231921.1|CD231921 SS1_30_E07.g1_A012 Salt-stressed seedlings Sorghum bicolor cDNA clone
SS1_30_E07_A012 5', mRNA sequence
Length = 570
Score = 674 bits (340), Expect = 0.0
Identities = 447/480 (93%), Gaps = 2/480 (0%)
Strand = Plus / Minus
Query: 941 cccgcgaagaagccggccacggcgtaggtgtagggtatgcccgcggcctcggtggcgcgg 1000
||||||||| |||| |||| |||||| |||||||| |||||||||||||||||||||||
Sbjct: 568 cccgcgaagtagcccgccagggcgtacgtgtaggggatgcccgcggcctcggtggcgcgc 509
Query: 1001 cggatgcccaccttggcgcctaggatggacttggccggctccacgatgcccgtgcggtcc 1060
||||||||||||||| || | ||||| |||||| ||||||||||||| ||||||||||||
Sbjct: 508 cggatgcccaccttgccggcgaggatcgacttgcccggctccacgatccccgtgcggtcc 449
Query: 1061 acgtccaggccgaactccgacgggaagaacctcttgacgtttccggcctccttgatggcg 1120
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 448 acgtccaggccgaactccgacgggaagaacctcttgacgttgccggcctccttgatggcg 389
Query: 1121 tcgacgagccggctctggtcggcgatctgcatcgatccgagcacggagatgaccacgtcc 1180
|||| ||||||| |||||||||||||||||| ||| |||||| ||||||||||||||||
Sbjct: 388 tcgatgagccgggtctggtcggcgatctgcagcgacccgagcgcggagatgaccacgtcg 329
Query: 1181 gcgcccttcaccgcgctcaccaggctagcctggtcgtacaggtcgcccttgaggagcgtc 1240
||||||||||| ||||| || ||||||||||||||||| ||||||||||||| |||||||
Sbjct: 328 gcgcccttcacggcgctgacaaggctagcctggtcgtagaggtcgcccttgacgagcgtc 269
Query: 1241 acgccggcgtcctggaagctcttgagcagcgccgctttggccgggtcggacggcgccgtg 1300
|||||||||||||||||||||| |||||||||||| |||||||||||||| |||||||||
Sbjct: 268 acgccggcgtcctggaagctctggagcagcgccgccttggccgggtcggagggcgccgtg 209
Query: 1301 tccctgacgagcgccgaggtggggtggcccagccgcgcgctcgccgccacgacgtgcctg 1360
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 208 tccctgacgagcgcgacggtggggtggcccagccgcgcgctcgccgccacgacgtgccgg 149
Query: 1361 cccaggtaccccgtgccgccgaccaccagga-tcttgctcttctcc-gacgccatctatc 1418
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct: 148 cccaggtaccccgtgccgccgaccaccaggattcttgctcttctccngacgccatctatc 89
>gb|CX608344.1|CX608344 ANR1_38_C03.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_38_C03_A002 3', mRNA sequence
Length = 605
Score = 609 bits (307), Expect = e-172
Identities = 370/391 (94%)
Strand = Plus / Minus
Query: 484 tcagagaaagcggttgaggtactcgtcgacggtggtgtacttgacatccgggtacagttc 543
|||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct: 391 tcagaggaagcggttcaggtactcgtcgacggtggtgtacttgacgtccgggtacagctc 332
Query: 544 gctggcgtccacccccttggccgggtcgatctcgaagcccgtctgctccccacgcacgaa 603
| |||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |
Sbjct: 331 ggtggcgtccaccctcttggccgggtcgatctcgaagcccgtctgctccccccgcacgta 272
Query: 604 cgccgcgtgcccgatcgccaggatgatgttcagagggatcggcgactcttggatctgctt 663
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 271 cgccgcgtgcccgatcgccaggatgatgttcagcgggatcggcgactcttggatctgctt 212
Query: 664 gagcacggcttcctccggcacgtactcccgccggaacgtcttgccggtcttcttctccca 723
||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 211 gagcacggcttcctcaggcacgtactcccgctggaacgtcttgccggtcttcttctccca 152
Query: 724 cagcgacagcagctcgttgtgcgacagcgtgttggccggcggcttgatgtacagcacctt 783
|||||||||||||||||||||||||||||||||||| || ||||||||||||||| |||
Sbjct: 151 cagcgacagcagctcgttgtgcgacagcgtgttggcggggggcttgatgtacagcgtctt 92
Query: 784 gttctccgcgcgcgggtcgtcggccgccagcaccgtgtacgtggcgatgtcgccctcctc 843
|||||| ||||||||||||||||| ||||||||||||||||| ||||||| ||||||||
Sbjct: 91 gttctcggcgcgcgggtcgtcggcggccagcaccgtgtacgtcccgatgtccccctcctc 32
Query: 844 cacgaacaccgccttggtgtcgccgtcgccg 874
|||||||||| ||||||||||||||||||||
Sbjct: 31 cacgaacaccaccttggtgtcgccgtcgccg 1
>gb|BG357242.1|BG357242 OV2_11_E10.b1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA sequence
Length = 471
Score = 605 bits (305), Expect = e-171
Identities = 374/397 (94%)
Strand = Plus / Minus
Query: 1022 aggatggacttggccggctccacgatgcccgtgcggtccacgtccaggccgaactccgac 1081
||||| |||||| ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 462 aggatcgacttgcccggctccacgatccccgtgcggtccacgtccaggccgaactccgac 403
Query: 1082 gggaagaacctcttgacgtttccggcctccttgatggcgtcgacgagccggctctggtcg 1141
|||||||||||||||||||| |||||||||||||||||||||| ||||||| ||||||||
Sbjct: 402 gggaagaacctcttgacgttgccggcctccttgatggcgtcgatgagccgggtctggtcg 343
Query: 1142 gcgatctgcatcgatccgagcacggagatgaccacgtccgcgcccttcaccgcgctcacc 1201
|||||||||| ||| |||||| ||||||||||||||| ||||||||||| ||||| ||
Sbjct: 342 gcgatctgcagcgacccgagcgtggagatgaccacgtcggcgcccttcacggcgctgaca 283
Query: 1202 aggctagcctggtcgtacaggtcgcccttgaggagcgtcacgccggcgtcctggaagctc 1261
||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 282 aggctagcctggtcgtagaggtcgcccttgacgagcgtcacgccggcgtcctggaagctc 223
Query: 1262 ttgagcagcgccgctttggccgggtcggacggcgccgtgtccctgacgagcgccgaggtg 1321
| |||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||
Sbjct: 222 tggagcagcgccgccttggccgggtcggagggcgccgtgtccctgacgagcgcgacggtg 163
Query: 1322 gggtggcccagccgcgcgctcgccgccacgacgtgcctgcccaggtaccccgtgccgccg 1381
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 162 gggtggcccagccgcgcgctcgccgccacgacgtgccggcccaggtaccccgtgccgccg 103
Query: 1382 accaccaggatcttgctcttctccgacgccatctatc 1418
|||||||||||||||||||||||||||||||||||||
Sbjct: 102 accaccaggatcttgctcttctccgacgccatctatc 66
>gb|BG054078.1|BG054078 OV2_3_B08.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA sequence
Length = 494
Score = 603 bits (304), Expect = e-170
Identities = 367/388 (94%)
Strand = Plus / Minus
Query: 484 tcagagaaagcggttgaggtactcgtcgacggtggtgtacttgacatccgggtacagttc 543
|||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct: 388 tcagaggaagcggttcaggtactcgtcgacggtggtgtacttgacgtccgggtacagctc 329
Query: 544 gctggcgtccacccccttggccgggtcgatctcgaagcccgtctgctccccacgcacgaa 603
| |||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |
Sbjct: 328 ggtggcgtccaccctcttggccgggtcgatctcgaagcccgtctgctccccccgcacgta 269
Query: 604 cgccgcgtgcccgatcgccaggatgatgttcagagggatcggcgactcttggatctgctt 663
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 268 cgccgcgtgcccgatcgccaggatgatgttcagcgggatcggcgactcttggatctgctt 209
Query: 664 gagcacggcttcctccggcacgtactcccgccggaacgtcttgccggtcttcttctccca 723
||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 208 gagcacggcttcctcaggcacgtactcccgctggaacgtcttgccggtcttcttctccca 149
Query: 724 cagcgacagcagctcgttgtgcgacagcgtgttggccggcggcttgatgtacagcacctt 783
|||||||||||||||||||||||||||||||||||| || ||||||||||||||| |||
Sbjct: 148 cagcgacagcagctcgttgtgcgacagcgtgttggcggggggcttgatgtacagcgtctt 89
Query: 784 gttctccgcgcgcgggtcgtcggccgccagcaccgtgtacgtggcgatgtcgccctcctc 843
|||||| ||||||||||||||||| ||||||||||||||||| ||||||| ||||||||
Sbjct: 88 gttctcggcgcgcgggtcgtcggcggccagcaccgtgtacgtcccgatgtccccctcctc 29
Query: 844 cacgaacaccgccttggtgtcgccgtcg 871
|||||||||| |||||||||||||||||
Sbjct: 28 cacgaacaccaccttggtgtcgccgtcg 1
>gb|CW229208.1|CW229208 104_670_11207182_116_37262_089 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11207182, DNA
sequence
Length = 564
Score = 595 bits (300), Expect = e-168
Identities = 408/444 (91%)
Strand = Plus / Minus
Query: 651 cttggatctgcttgagcacggcttcctccggcacgtactcccgccggaacgtcttgccgg 710
|||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct: 457 cttggatctgcttgagcacggcttcctcaggcacgtactcccgctggaacgtcttgccgg 398
Query: 711 tcttcttctcccacagcgacagcagctcgttgtgcgacagcgtgttggccggcggcttga 770
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct: 397 tcttcttctcccacagcgacagcagctcgttgtgcgacagcgtgttggcggggggcttga 338
Query: 771 tgtacagcaccttgttctccgcgcgcgggtcgtcggccgccagcaccgtgtacgtggcga 830
|||||||| ||||||||| ||||||||||||||||| |||||||||||||| || ||
Sbjct: 337 tgtacagcgtcttgttctcggcgcgcgggtcgtcggcggccagcaccgtgtatgtcctga 278
Query: 831 tgtcgccctcctccacgaacaccgccttggtgtcgccgtcgccgaggacgaccgccttgt 890
|||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct: 277 tgtccccctcctccacgaacaccaccttggtgtcgccgtcgccgaggaccaccgccttgt 218
Query: 891 ccgcgggcgggccgggggcgaggacctgcccgaccttggggaggccgaagcccgcgaaga 950
||| |||||||||||| || |||| ||||||||| |||||||| || | |||||||||
Sbjct: 217 ccgtgggcgggccgggcgccaggagctgcccgacgttggggagcgcgtaccccgcgaagt 158
Query: 951 agccggccacggcgtaggtgtagggtatgcccgcggcctcggtggcgcggcggatgccca 1010
|||| |||| |||||| |||||||| ||||||||||||||||||||||| ||||||||||
Sbjct: 157 agcccgccagggcgtacgtgtaggggatgcccgcggcctcggtggcgcgccggatgccca 98
Query: 1011 ccttggcgcctaggatggacttggccggctccacgatgcccgtgcggtccacgtccaggc 1070
||||| || | ||||| |||||| ||||||||||||| ||||||||||||||||||||||
Sbjct: 97 ccttgccggcgaggatcgacttgcccggctccacgatccccgtgcggtccacgtccaggc 38
Query: 1071 cgaactccgacgggaagaacctct 1094
||||||||||||||||||||||||
Sbjct: 37 cgaactccgacgggaagaacctct 14
>gb|BF317701.1|BF317701 OV1_12_C03.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 533
Score = 515 bits (260), Expect = e-144
Identities = 308/324 (95%)
Strand = Plus / Minus
Query: 484 tcagagaaagcggttgaggtactcgtcgacggtggtgtacttgacatccgggtacagttc 543
|||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct: 327 tcagaggaagcggttcaggtactcgtcgacggtggtgtacttgacgtccgggtacagctc 268
Query: 544 gctggcgtccacccccttggccgggtcgatctcgaagcccgtctgctccccacgcacgaa 603
| |||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |
Sbjct: 267 ggtggcgtccaccctcttggccgggtcgatctcgaagcccgtctgctccccccgcacgta 208
Query: 604 cgccgcgtgcccgatcgccaggatgatgttcagagggatcggcgactcttggatctgctt 663
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 207 cgccgcgtgcccgatcgccaggatgatgttcagcgggatcggcgactcttggatctgctt 148
Query: 664 gagcacggcttcctccggcacgtactcccgccggaacgtcttgccggtcttcttctccca 723
||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 147 gagcacggcttcctcaggcacgtactcccgctggaacgtcttgccggtcttcttctccca 88
Query: 724 cagcgacagcagctcgttgtgcgacagcgtgttggccggcggcttgatgtacagcacctt 783
|||||||||||||||||||||||||||||||||||| || ||||||||||||||| |||
Sbjct: 87 cagcgacagcagctcgttgtgcgacagcgtgttggcggggggcttgatgtacagcgtctt 28
Query: 784 gttctccgcgcgcgggtcgtcggc 807
|||||| |||||||||||||||||
Sbjct: 27 gttctcggcgcgcgggtcgtcggc 4
>gb|BG356656.1|BG356656 OV2_26_B11.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 524
Score = 515 bits (260), Expect = e-144
Identities = 308/324 (95%)
Strand = Plus / Minus
Query: 484 tcagagaaagcggttgaggtactcgtcgacggtggtgtacttgacatccgggtacagttc 543
|||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct: 325 tcagaggaagcggttcaggtactcgtcgacggtggtgtacttgacgtccgggtacagctc 266
Query: 544 gctggcgtccacccccttggccgggtcgatctcgaagcccgtctgctccccacgcacgaa 603
| |||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |
Sbjct: 265 ggtggcgtccaccctcttggccgggtcgatctcgaagcccgtctgctccccccgcacgta 206
Query: 604 cgccgcgtgcccgatcgccaggatgatgttcagagggatcggcgactcttggatctgctt 663
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 205 cgccgcgtgcccgatcgccaggatgatgttcagcgggatcggcgactcttggatctgctt 146
Query: 664 gagcacggcttcctccggcacgtactcccgccggaacgtcttgccggtcttcttctccca 723
||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 145 gagcacggcttcctcaggcacgtactcccgctggaacgtcttgccggtcttcttctccca 86
Query: 724 cagcgacagcagctcgttgtgcgacagcgtgttggccggcggcttgatgtacagcacctt 783
|||||||||||||||||||||||||||||||||||| || ||||||||||||||| |||
Sbjct: 85 cagcgacagcagctcgttgtgcgacagcgtgttggcggggggcttgatgtacagcgtctt 26
Query: 784 gttctccgcgcgcgggtcgtcggc 807
|||||| |||||||||||||||||
Sbjct: 25 gttctcggcgcgcgggtcgtcggc 2
>gb|CN137974.1|CN137974 OX1_61_A09.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_61_A09_A002 3', mRNA sequence
Length = 703
Score = 502 bits (253), Expect = e-140
Identities = 352/385 (91%)
Strand = Plus / Minus
Query: 657 tctgcttgagcacggcttcctccggcacgtactcccgccggaacgtcttgccggtcttct 716
|||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct: 385 tctgcttgagcacggcttcctcaggcacgtactcccgctggaacgtcttgccggtcttct 326
Query: 717 tctcccacagcgacagcagctcgttgtgcgacagcgtgttggccggcggcttgatgtaca 776
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct: 325 tctcccacagcgacagcagctcgttgtgcgacagcgtgttggcggggggcttgatgtaca 266
Query: 777 gcaccttgttctccgcgcgcgggtcgtcggccgccagcaccgtgtacgtggcgatgtcgc 836
|| ||||||||| ||||||||||||||||| ||||||||||||||||| ||||||| |
Sbjct: 265 gcgtcttgttctcggcgcgcgggtcgtcggcggccagcaccgtgtacgtcccgatgtccc 206
Query: 837 cctcctccacgaacaccgccttggtgtcgccgtcgccgaggacgaccgccttgtccgcgg 896
||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| ||
Sbjct: 205 cctcctccacgaacaccaccttggtgtcgccgtcgccgaggaccaccgccttgtccgtgg 146
Query: 897 gcgggccgggggcgaggacctgcccgaccttggggaggccgaagcccgcgaagaagccgg 956
|||||||||| || |||| ||||||||| |||||||| || | ||||||||| |||| |
Sbjct: 145 gcgggccgggcgccaggagctgcccgacgttggggagcgcgtaccccgcgaagtagcccg 86
Query: 957 ccacggcgtaggtgtagggtatgcccgcggcctcggtggcgcggcggatgcccaccttgg 1016
||| |||||| |||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct: 85 ccagggcgtacgtgtaggggatgcccgcggcctcggtggcgcgccggatgcccaccttgc 26
Query: 1017 cgcctaggatggacttggccggctc 1041
|| | ||||| |||||| |||||||
Sbjct: 25 cggcgaggatcgacttgcccggctc 1
Score = 157 bits (79), Expect = 3e-036
Identities = 100/107 (93%)
Strand = Plus / Minus
Query: 484 tcagagaaagcggttgaggtactcgtcgacggtggtgtacttgacatccgggtacagttc 543
|||||| |||||||| |||||||||||||||| |||||||||||| ||||||||||| ||
Sbjct: 486 tcagaggaagcggttcaggtactcgtcgacgggggtgtacttgacgtccgggtacagctc 427
Query: 544 gctggcgtccacccccttggccgggtcgatctcgaagcccgtctgct 590
| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 426 ggtggcgtccaccctcttggccgggtcgatctcgaagcccgtctgct 380
>gb|BF317700.1|BF317700 OV1_12_C02.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 357
Score = 450 bits (227), Expect = e-124
Identities = 288/307 (93%), Gaps = 1/307 (0%)
Strand = Plus / Minus
Query: 484 tcagagaaagcggttgaggtactcgtcgacggtggtgtacttgacatccgggtacagttc 543
|||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct: 312 tcagaggaagcggttcaggtactcgtcgacggtggtgtacttgacgtccgggtacagctc 253
Query: 544 gctggcgtccacccccttggccgggtcgatctcgaagcccgtctgctccccacgcacgaa 603
| |||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |
Sbjct: 252 ggtggcgtccaccctcttggccgggtcgatctcgaagcccgtctgctccccccgcacgta 193
Query: 604 cgccgcgtgcccgatcgccag-gatgatgttcagagggatcggcgactcttggatctgct 662
|||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct: 192 cgccgcgtgcccgatcgccactgatgatgttcagcgggatcggcgactcttggatctgct 133
Query: 663 tgagcacggcttcctccggcacgtactcccgccggaacgtcttgccggtcttcttctccc 722
|||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct: 132 tgagcacggcttcctcatgcacgtactcccgctggaacgtcttgccggtcttcttctccc 73
Query: 723 acagcgacagcagctcgttgtgcgacagcgtgttggccggcggcttgatgtacagcacct 782
||||||||||||||||||||||||||||||||||||| || ||||||||||||| | ||
Sbjct: 72 acagcgacagcagctcgttgtgcgacagcgtgttggcggggggcttgatgtacaacgtct 13
Query: 783 tgttctc 789
|||||||
Sbjct: 12 tgttctc 6
>gb|CW241116.1|CW241116 104_700_11218590_148_37543_029 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11218590, DNA
sequence
Length = 600
Score = 438 bits (221), Expect = e-121
Identities = 299/325 (92%)
Strand = Plus / Minus
Query: 651 cttggatctgcttgagcacggcttcctccggcacgtactcccgccggaacgtcttgccgg 710
|||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct: 329 cttggatctgcttgagcacggcttcctcaggcacgtactcccgctggaacgtcttgccgg 270
Query: 711 tcttcttctcccacagcgacagcagctcgttgtgcgacagcgtgttggccggcggcttga 770
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct: 269 tcttcttctcccacagcgacagcagctcgttgtgcgacagcgtgttggcggggggcttga 210
Query: 771 tgtacagcaccttgttctccgcgcgcgggtcgtcggccgccagcaccgtgtacgtggcga 830
|||||||| ||||||||| ||||||||||||||||| ||||||||||||||||| |||
Sbjct: 209 tgtacagcgtcttgttctcggcgcgcgggtcgtcggcggccagcaccgtgtacgtcccga 150
Query: 831 tgtcgccctcctccacgaacaccgccttggtgtcgccgtcgccgaggacgaccgccttgt 890
|||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct: 149 tgtccccctcctccacgaacaccaccttggtgtcgccgtcgccgaggaccaccgccttgt 90
Query: 891 ccgcgggcgggccgggggcgaggacctgcccgaccttggggaggccgaagcccgcgaaga 950
||| |||||||||||| || |||| ||||||||| |||||||| || | |||||||||
Sbjct: 89 ccgtgggcgggccgggcgccaggagctgcccgacgttggggagcgcgtaccccgcgaagt 30
Query: 951 agccggccacggcgtaggtgtaggg 975
|||| |||| |||||| ||||||||
Sbjct: 29 agcccgccagggcgtacgtgtaggg 5
Score = 264 bits (133), Expect = 2e-068
Identities = 160/169 (94%)
Strand = Plus / Minus
Query: 484 tcagagaaagcggttgaggtactcgtcgacggtggtgtacttgacatccgggtacagttc 543
|||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct: 599 tcagaggaagcggttcaggtactcgtcgacggtggtgtacttgacgtccgggtacagctc 540
Query: 544 gctggcgtccacccccttggccgggtcgatctcgaagcccgtctgctccccacgcacgaa 603
| |||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |
Sbjct: 539 ggtggcgtccaccctcttggccgggtcgatctcgaagcccgtctgctccccccgcacgta 480
Query: 604 cgccgcgtgcccgatcgccaggatgatgttcagagggatcggcgactct 652
||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 479 cgccgcgtgcccgatcgccaggatgatgttcagcgggatcggcgactct 431
>gb|BG273478.1|BG273478 OV2_26_B11.b1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA sequence
Length = 314
Score = 402 bits (203), Expect = e-110
Identities = 257/275 (93%)
Strand = Plus / Minus
Query: 1144 gatctgcatcgatccgagcacggagatgaccacgtccgcgcccttcaccgcgctcaccag 1203
|||||||| ||| |||||| ||||||||||||||| ||||||||| | ||||| || ||
Sbjct: 314 gatctgcagcgacccgagcgtggagatgaccacgtcggcgcccttcccggcgctgacaag 255
Query: 1204 gctagcctggtcgtacaggtcgcccttgaggagcgtcacgccggcgtcctggaagctctt 1263
||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 254 gctagcctggtcgtagaggtcgcccttgacgagcgtcacgccggcgtcctggaagctctg 195
Query: 1264 gagcagcgccgctttggccgggtcggacggcgccgtgtccctgacgagcgccgaggtggg 1323
|||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 194 gagcagcgccgccttggccgggtcggagggcgccgtgtccctgacgagcgcgacggtggg 135
Query: 1324 gtggcccagccgcgcgctcgccgccacgacgtgcctgcccaggtaccccgtgccgccgac 1383
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 134 gtggcccagccgcgcgctcgccgccacgacgtgccggcccaggtaccccgtgccgccgac 75
Query: 1384 caccaggatcttgctcttctccgacgccatctatc 1418
|||||||||||||||||||||||||||||||||||
Sbjct: 74 caccaggatcttgctcttctccgacgccatctatc 40
>gb|CW030845.1|CW030845 104_259_10500460_114_30397 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10500460, DNA
sequence
Length = 735
Score = 400 bits (202), Expect = e-109
Identities = 292/322 (90%)
Strand = Plus / Plus
Query: 1093 cttgacgtttccggcctccttgatggcgtcgacgagccggctctggtcggcgatctgcat 1152
||||||||| ||||||||||||||||| |||| ||||| ||||||||||||||||||
Sbjct: 57 cttgacgttgccggcctccttgatggcatcgatgagccttgcctggtcggcgatctgcat 116
Query: 1153 cgatccgagcacggagatgaccacgtccgcgcccttcaccgcgctcaccaggctagcctg 1212
| |||||| ||||||||||||||| || |||| || |||||| |||||||||||||
Sbjct: 117 cttcccgagcgtggagatgaccacgtcggcagccttgacggcgctcgccaggctagcctg 176
Query: 1213 gtcgtacaggtcgcccttgaggagcgtcacgccggcgtcctggaagctcttgagcagcgc 1272
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 177 gtcgtacaggtcgcccttgaggagcgtcacgccggtgtcctggaagctcttgagcagcgc 236
Query: 1273 cgctttggccgggtcggacggcgccgtgtccctgacgagcgccgaggtggggtggcccag 1332
||| |||||||||||||| || || ||||||||||| |||||| ||||||||||||| ||
Sbjct: 237 cgccttggccgggtcggagggggcggtgtccctgaccagcgccaaggtggggtggccgag 296
Query: 1333 ccgcgcgctcgccgccacgacgtgcctgcccaggtaccccgtgccgccgaccaccaggat 1392
|| |||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct: 297 cctcgcgctcgccgccacgacatgcctgcccaggtaccccgtcccgccgaccaccaggat 356
Query: 1393 cttgctcttctccgacgccatc 1414
| ||||||||||||||||||||
Sbjct: 357 cctgctcttctccgacgccatc 378
>gb|CW032781.1|CW032781 104_262_10501588_114_30361 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10501588, DNA
sequence
Length = 591
Score = 400 bits (202), Expect = e-109
Identities = 292/322 (90%)
Strand = Plus / Minus
Query: 1093 cttgacgtttccggcctccttgatggcgtcgacgagccggctctggtcggcgatctgcat 1152
||||||||| ||||||||||||||||| |||| ||||| ||||||||||||||||||
Sbjct: 405 cttgacgttgccggcctccttgatggcatcgatgagccttgcctggtcggcgatctgcat 346
Query: 1153 cgatccgagcacggagatgaccacgtccgcgcccttcaccgcgctcaccaggctagcctg 1212
| |||||| ||||||||||||||| || |||| || |||||| |||||||||||||
Sbjct: 345 cttcccgagcgtggagatgaccacgtcggcagccttgacggcgctcgccaggctagcctg 286
Query: 1213 gtcgtacaggtcgcccttgaggagcgtcacgccggcgtcctggaagctcttgagcagcgc 1272
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 285 gtcgtacaggtcgcccttgaggagcgtcacgccggtgtcctggaagctcttgagcagcgc 226
Query: 1273 cgctttggccgggtcggacggcgccgtgtccctgacgagcgccgaggtggggtggcccag 1332
||| |||||||||||||| || || ||||||||||| |||||| ||||||||||||| ||
Sbjct: 225 cgccttggccgggtcggagggggcggtgtccctgaccagcgccaaggtggggtggccgag 166
Query: 1333 ccgcgcgctcgccgccacgacgtgcctgcccaggtaccccgtgccgccgaccaccaggat 1392
|| |||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct: 165 cctcgcgctcgccgccacgacatgcctgcccaggtaccccgtcccgccgaccaccaggat 106
Query: 1393 cttgctcttctccgacgccatc 1414
| ||||||||||||||||||||
Sbjct: 105 cctgctcttctccgacgccatc 84
Score = 117 bits (59), Expect = 3e-024
Identities = 62/63 (98%)
Strand = Plus / Minus
Query: 1029 acttggccggctccacgatgcccgtgcggtccacgtccaggccgaactccgacgggaaga 1088
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 acttgcccggctccacgatgcccgtgcggtccacgtccaggccgaactccgacgggaaga 532
Query: 1089 acc 1091
|||
Sbjct: 531 acc 529
>gb|CW084941.1|CW084941 104_428_10946101_114_32560_063 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10946101, DNA
sequence
Length = 635
Score = 400 bits (202), Expect = e-109
Identities = 292/322 (90%)
Strand = Plus / Plus
Query: 1093 cttgacgtttccggcctccttgatggcgtcgacgagccggctctggtcggcgatctgcat 1152
||||||||| ||||||||||||||||| |||| ||||| ||||||||||||||||||
Sbjct: 77 cttgacgttgccggcctccttgatggcatcgatgagccttgcctggtcggcgatctgcat 136
Query: 1153 cgatccgagcacggagatgaccacgtccgcgcccttcaccgcgctcaccaggctagcctg 1212
| |||||| ||||||||||||||| || |||| || |||||| |||||||||||||
Sbjct: 137 cttcccgagcgtggagatgaccacgtcggcagccttgacggcgctcgccaggctagcctg 196
Query: 1213 gtcgtacaggtcgcccttgaggagcgtcacgccggcgtcctggaagctcttgagcagcgc 1272
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 197 gtcgtacaggtcgcccttgaggagcgtcacgccggtgtcctggaagctcttgagcagcgc 256
Query: 1273 cgctttggccgggtcggacggcgccgtgtccctgacgagcgccgaggtggggtggcccag 1332
||| |||||||||||||| || || ||||||||||| |||||| ||||||||||||| ||
Sbjct: 257 cgccttggccgggtcggagggggcggtgtccctgaccagcgccaaggtggggtggccgag 316
Query: 1333 ccgcgcgctcgccgccacgacgtgcctgcccaggtaccccgtgccgccgaccaccaggat 1392
|| |||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct: 317 cctcgcgctcgccgccacgacatgcctgcccaggtaccccgtcccgccgaccaccaggat 376
Query: 1393 cttgctcttctccgacgccatc 1414
| ||||||||||||||||||||
Sbjct: 377 cctgctcttctccgacgccatc 398
>gb|CW318975.1|CW318975 104_811_11474241_148_35884_041 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11474241, DNA
sequence
Length = 678
Score = 387 bits (195), Expect = e-105
Identities = 292/323 (90%), Gaps = 1/323 (0%)
Strand = Plus / Plus
Query: 1093 cttgacgtttccggcctccttgatggcgtcgacgagccggctctggtcggcgatctgcat 1152
||||||||| ||||||||||||||||| |||| ||||| ||||||||||||||||||
Sbjct: 193 cttgacgttgccggcctccttgatggcatcgatgagccttgcctggtcggcgatctgcat 252
Query: 1153 cgatccgagcacggagatgaccacgtccgcgcccttcaccgcgctcaccaggctagcctg 1212
| |||||| ||||||||||||||| || |||| || |||||| |||||||||||||
Sbjct: 253 cttcccgagcgtggagatgaccacgtcggcagccttgacggcgctcgccaggctagcctg 312
Query: 1213 gtcgtacaggtcgcccttgaggagcgtcacgccggcgtcctggaagctcttgagcagcgc 1272
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 313 gtcgtacaggtcgcccttgaggagcgtcacgccggtgtcctggaagctcttgagcagcgc 372
Query: 1273 cgctttggccgggtcgg-acggcgccgtgtccctgacgagcgccgaggtggggtggccca 1331
||| ||||||||||||| | || || ||||||||||| |||||| ||||||||||||| |
Sbjct: 373 cgccttggccgggtcggaagggggcggtgtccctgaccagcgccaaggtggggtggccga 432
Query: 1332 gccgcgcgctcgccgccacgacgtgcctgcccaggtaccccgtgccgccgaccaccagga 1391
||| |||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct: 433 gcctcgcgctcgccgccacgacatgcctgcccaggtaccccgtcccgccgaccaccagga 492
Query: 1392 tcttgctcttctccgacgccatc 1414
|| ||||||||||||||||||||
Sbjct: 493 tcctgctcttctccgacgccatc 515
Score = 121 bits (61), Expect = 2e-025
Identities = 64/65 (98%)
Strand = Plus / Plus
Query: 1027 ggacttggccggctccacgatgcccgtgcggtccacgtccaggccgaactccgacgggaa 1086
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 ggacttgcccggctccacgatgcccgtgcggtccacgtccaggccgaactccgacgggaa 64
Query: 1087 gaacc 1091
|||||
Sbjct: 65 gaacc 69
>gb|BF420874.1|BF420874 OV1_12_C02.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence
Length = 283
Score = 385 bits (194), Expect = e-105
Identities = 248/266 (93%)
Strand = Plus / Minus
Query: 1022 aggatggacttggccggctccacgatgcccgtgcggtccacgtccaggccgaactccgac 1081
||||| |||||| ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 274 aggatcgacttgcccggctccacgatccccgtgcggtccacgtccaggccgaactccgac 215
Query: 1082 gggaagaacctcttgacgtttccggcctccttgatggcgtcgacgagccggctctggtcg 1141
|||||||||||||||||||| |||||||||||||||||||||| ||||||| ||||||||
Sbjct: 214 gggaagaacctcttgacgttgccggcctccttgatggcgtcgatgagccgggtctggtcg 155
Query: 1142 gcgatctgcatcgatccgagcacggagatgaccacgtccgcgcccttcaccgcgctcacc 1201
|||||||||| ||| |||||| ||||||||||||||| ||||||||||| ||||| ||
Sbjct: 154 gcgatctgcagcgacccgagcgtggagatgaccacgtcggcgcccttcacggcgctgaca 95
Query: 1202 aggctagcctggtcgtacaggtcgcccttgaggagcgtcacgccggcgtcctggaagctc 1261
||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 94 aggctagcctggtcgtagaggtcgcccttgacgagcgtcacgccggcgtcctggaagctc 35
Query: 1262 ttgagcagcgccgctttggccgggtc 1287
| |||||||||||| |||||||||||
Sbjct: 34 tggagcagcgccgccttggccgggtc 9
>gb|CW241115.1|CW241115 104_700_11218590_116_37544_029 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11218590, DNA
sequence
Length = 422
Score = 323 bits (163), Expect = 3e-086
Identities = 248/275 (90%), Gaps = 1/275 (0%)
Strand = Plus / Plus
Query: 651 cttggatctgcttgagcacggcttcctccggcacgtactcccgccggaacgtcttgccgg 710
|||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct: 146 cttggatctgcttgagcacggcttcctcatgcacgtactcccgctggaacgtcttgccgg 205
Query: 711 tcttcttctcccacagcgacagcagct-cgttgtgcgacagcgtgttggccggcggcttg 769
||||||||||| ||||||||||||||| |||||||| ||||||||||||| || ||||||
Sbjct: 206 tcttcttctccaacagcgacagcagctgcgttgtgctacagcgtgttggcggggggcttg 265
Query: 770 atgtacagcaccttgttctccgcgcgcgggtcgtcggccgccagcaccgtgtacgtggcg 829
||||||||| ||||||||| ||||| |||||||| || ||||||||||||||||| ||
Sbjct: 266 atgtacagcgtcttgttctcggcgcgagggtcgtcagcggccagcaccgtgtacgtcccg 325
Query: 830 atgtcgccctcctccacgaacaccgccttggtgtcgccgtcgccgaggacgaccgccttg 889
||||| |||||||||||||||||| ||||||||||| ||||||||||||| |||| ||||
Sbjct: 326 atgtccccctcctccacgaacaccaccttggtgtcgacgtcgccgaggaccaccgtcttg 385
Query: 890 tccgcgggcgggccgggggcgaggacctgcccgac 924
|||| ||||||| |||| || | || |||||||||
Sbjct: 386 tccgtgggcgggtcgggcgccatgagctgcccgac 420
Score = 61.9 bits (31), Expect = 2e-007
Identities = 41/43 (95%), Gaps = 1/43 (2%)
Strand = Plus / Plus
Query: 611 tgcccgatcgccaggatgatgttcaga-gggatcggcgactct 652
||||||||||||||||||||||||||| | |||||||||||||
Sbjct: 1 tgcccgatcgccaggatgatgttcagacgagatcggcgactct 43
>gb|CW084107.1|CW084107 104_426_10945580_114_32377_070 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10945580, DNA
sequence
Length = 411
Score = 274 bits (138), Expect = 2e-071
Identities = 195/214 (91%)
Strand = Plus / Minus
Query: 1201 caggctagcctggtcgtacaggtcgcccttgaggagcgtcacgccggcgtcctggaagct 1260
||||||||||||||||| ||||||||||| | |||||||||||||||||||||||||||
Sbjct: 358 caggctagcctggtcgtggaggtcgcccttcacgagcgtcacgccggcgtcctggaagct 299
Query: 1261 cttgagcagcgccgctttggccgggtcggacggcgccgtgtccctgacgagcgccgaggt 1320
|| |||||||||||| ||||||| |||||| || || ||||||||||| |||||| ||||
Sbjct: 298 ctggagcagcgccgccttggccgcgtcggagggggcggtgtccctgaccagcgccaaggt 239
Query: 1321 ggggtggcccagccgcgcgctcgccgccacgacgtgcctgcccaggtaccccgtgccgcc 1380
|||||||||| ||||||||||||||||||||||||||||||| |||| || ||| ||||
Sbjct: 238 ggggtggccctgccgcgcgctcgccgccacgacgtgcctgccgaggtggcctgtggcgcc 179
Query: 1381 gaccaccaggatcttgctcttctccgacgccatc 1414
|||||| |||||||||||||||||||||||||||
Sbjct: 178 gaccactaggatcttgctcttctccgacgccatc 145
>gb|CW121610.1|CW121610 104_499_11109998_148_34658_053 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11109998, DNA
sequence
Length = 585
Score = 274 bits (138), Expect = 2e-071
Identities = 195/214 (91%)
Strand = Plus / Minus
Query: 1201 caggctagcctggtcgtacaggtcgcccttgaggagcgtcacgccggcgtcctggaagct 1260
||||||||||||||||| ||||||||||| | |||||||||||||||||||||||||||
Sbjct: 348 caggctagcctggtcgtggaggtcgcccttcacgagcgtcacgccggcgtcctggaagct 289
Query: 1261 cttgagcagcgccgctttggccgggtcggacggcgccgtgtccctgacgagcgccgaggt 1320
|| |||||||||||| ||||||| |||||| || || ||||||||||| |||||| ||||
Sbjct: 288 ctggagcagcgccgccttggccgcgtcggagggggcggtgtccctgaccagcgccaaggt 229
Query: 1321 ggggtggcccagccgcgcgctcgccgccacgacgtgcctgcccaggtaccccgtgccgcc 1380
|||||||||| ||||||||||||||||||||||||||||||| |||| || ||| ||||
Sbjct: 228 ggggtggccctgccgcgcgctcgccgccacgacgtgcctgccgaggtggcctgtggcgcc 169
Query: 1381 gaccaccaggatcttgctcttctccgacgccatc 1414
|||||| |||||||||||||||||||||||||||
Sbjct: 168 gaccactaggatcttgctcttctccgacgccatc 135
Score = 75.8 bits (38), Expect = 1e-011
Identities = 53/58 (91%)
Strand = Plus / Minus
Query: 1093 cttgacgtttccggcctccttgatggcgtcgacgagccggctctggtcggcgatctgc 1150
||||||||| |||||||||||||||||||||| ||||| | ||||||| |||||||||
Sbjct: 460 cttgacgttgccggcctccttgatggcgtcgatgagcctggtctggtcagcgatctgc 403
>gb|CW232476.1|CW232476 104_685_11212837_148_37366_061 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11212837, DNA
sequence
Length = 678
Score = 274 bits (138), Expect = 2e-071
Identities = 195/214 (91%)
Strand = Plus / Minus
Query: 1201 caggctagcctggtcgtacaggtcgcccttgaggagcgtcacgccggcgtcctggaagct 1260
||||||||||||||||| ||||||||||| | |||||||||||||||||||||||||||
Sbjct: 328 caggctagcctggtcgtggaggtcgcccttcacgagcgtcacgccggcgtcctggaagct 269
Query: 1261 cttgagcagcgccgctttggccgggtcggacggcgccgtgtccctgacgagcgccgaggt 1320
|| |||||||||||| ||||||| |||||| || || ||||||||||| |||||| ||||
Sbjct: 268 ctggagcagcgccgccttggccgcgtcggagggggcggtgtccctgaccagcgccaaggt 209
Query: 1321 ggggtggcccagccgcgcgctcgccgccacgacgtgcctgcccaggtaccccgtgccgcc 1380
|||||||||| ||||||||||||||||||||||||||||||| |||| || ||| ||||
Sbjct: 208 ggggtggccctgccgcgcgctcgccgccacgacgtgcctgccgaggtggcctgtggcgcc 149
Query: 1381 gaccaccaggatcttgctcttctccgacgccatc 1414
|||||| |||||||||||||||||||||||||||
Sbjct: 148 gaccactaggatcttgctcttctccgacgccatc 115
Score = 75.8 bits (38), Expect = 1e-011
Identities = 53/58 (91%)
Strand = Plus / Minus
Query: 1093 cttgacgtttccggcctccttgatggcgtcgacgagccggctctggtcggcgatctgc 1150
||||||||| |||||||||||||||||||||| ||||| | ||||||| |||||||||
Sbjct: 440 cttgacgttgccggcctccttgatggcgtcgatgagcctggtctggtcagcgatctgc 383
Score = 54.0 bits (27), Expect = 4e-005
Identities = 51/59 (86%)
Strand = Plus / Minus
Query: 1036 cggctccacgatgcccgtgcggtccacgtccaggccgaactccgacgggaagaacctct 1094
|||||||||| | ||| |||||| |||| ||||||||||||||||||| ||||||||
Sbjct: 656 cggctccacggcggccgagcggtcggcgtcaaggccgaactccgacgggatgaacctct 598
>gb|CW034107.1|CW034107 104_264_10502356_114_30358 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10502356, DNA
sequence
Length = 553
Score = 242 bits (122), Expect = 8e-062
Identities = 152/162 (93%)
Strand = Plus / Plus
Query: 491 aagcggttgaggtactcgtcgacggtggtgtacttgacatccgggtacagttcgctggcg 550
||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||
Sbjct: 248 aagcggttgaggtactcatcgacggtggtgtacttgacgtccgggtacagctcgctggcg 307
Query: 551 tccacccccttggccgggtcgatctcgaagcccgtctgctccccacgcacgaacgccgcg 610
||||||||| |||||||||||||||||||||| | |||||||||||||||| || |||||
Sbjct: 308 tccacccccatggccgggtcgatctcgaagccggcctgctccccacgcacgtaccccgcg 367
Query: 611 tgcccgatcgccaggatgatgttcagagggatcggcgactct 652
||||||||||||||||||||| |||| |||||||||||||||
Sbjct: 368 tgcccgatcgccaggatgatgctcagcgggatcggcgactct 409
Score = 99.6 bits (50), Expect = 7e-019
Identities = 53/54 (98%)
Strand = Plus / Plus
Query: 652 ttggatctgcttgagcacggcttcctccggcacgtactcccgccggaacgtctt 705
||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 499 ttggatctgcttgagcacggcttcctcgggcacgtactcccgccggaacgtctt 552
Score = 42.1 bits (21), Expect = 0.14
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 381 cgtcgtcgctagcgactagca 401
|||||||||||||||||||||
Sbjct: 134 cgtcgtcgctagcgactagca 154
>gb|CW084108.1|CW084108 104_426_10945580_116_32441_070 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10945580, DNA
sequence
Length = 608
Score = 224 bits (113), Expect = 2e-056
Identities = 209/241 (86%)
Strand = Plus / Plus
Query: 651 cttggatctgcttgagcacggcttcctccggcacgtactcccgccggaacgtcttgccgg 710
|||||||||||||||| ||||| ||||| | | | | ||||| ||||||| |||||||
Sbjct: 339 cttggatctgcttgaggacggcgtcctcggcgagatgcacccgctggaacgttttgccgg 398
Query: 711 tcttcttctcccacagcgacagcagctcgttgtgcgacagcgtgttggccggcggcttga 770
||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct: 399 tcttcttctcccagagcgccagtagctcgttgtgcgacagcgtgttggccggcggcttga 458
Query: 771 tgtacagcaccttgttctccgcgcgcgggtcgtcggccgccagcaccgtgtacgtggcga 830
||||||| | ||||| ||||||||||||||||||| |||||||||||||| || |||
Sbjct: 459 cgtacagcgtcctgttcaccgcgcgcgggtcgtcggcggccagcaccgtgtaggttccga 518
Query: 831 tgtcgccctcctccacgaacaccgccttggtgtcgccgtcgccgaggacgaccgccttgt 890
|||| ||||| || |||||| | | | |||||||||||||||||||||||| |||||||
Sbjct: 519 tgtccccctcgtcgacgaacgacacatcggtgtcgccgtcgccgaggacgacggccttgt 578
Query: 891 c 891
|
Sbjct: 579 c 579
>gb|CW232475.1|CW232475 104_685_11212837_116_37365_061 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11212837, DNA
sequence
Length = 709
Score = 224 bits (113), Expect = 2e-056
Identities = 209/241 (86%)
Strand = Plus / Plus
Query: 651 cttggatctgcttgagcacggcttcctccggcacgtactcccgccggaacgtcttgccgg 710
|||||||||||||||| ||||| ||||| | | | | ||||| ||||||| |||||||
Sbjct: 195 cttggatctgcttgaggacggcgtcctcggcgagatgcacccgctggaacgttttgccgg 254
Query: 711 tcttcttctcccacagcgacagcagctcgttgtgcgacagcgtgttggccggcggcttga 770
||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct: 255 tcttcttctcccagagcgccagtagctcgttgtgcgacagcgtgttggccggcggcttga 314
Query: 771 tgtacagcaccttgttctccgcgcgcgggtcgtcggccgccagcaccgtgtacgtggcga 830
||||||| | ||||| ||||||||||||||||||| |||||||||||||| || |||
Sbjct: 315 cgtacagcgtcctgttcaccgcgcgcgggtcgtcggcggccagcaccgtgtaggttccga 374
Query: 831 tgtcgccctcctccacgaacaccgccttggtgtcgccgtcgccgaggacgaccgccttgt 890
|||| ||||| || |||||| | | | |||||||||||||||||||||||| |||||||
Sbjct: 375 tgtccccctcgtcgacgaacgacacatcggtgtcgccgtcgccgaggacgacggccttgt 434
Query: 891 c 891
|
Sbjct: 435 c 435
Score = 54.0 bits (27), Expect = 4e-005
Identities = 51/59 (86%)
Strand = Plus / Plus
Query: 1036 cggctccacgatgcccgtgcggtccacgtccaggccgaactccgacgggaagaacctct 1094
|||||||||| | ||| |||||| |||| ||||||||||||||||||| ||||||||
Sbjct: 583 cggctccacggcggccgagcggtcggcgtcaaggccgaactccgacgggatgaacctct 641
>gb|CW235239.1|CW235239 104_690_11214876_116_37408_040 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11214876, DNA
sequence
Length = 652
Score = 224 bits (113), Expect = 2e-056
Identities = 209/241 (86%)
Strand = Plus / Minus
Query: 651 cttggatctgcttgagcacggcttcctccggcacgtactcccgccggaacgtcttgccgg 710
|||||||||||||||| ||||| ||||| | | | | ||||| ||||||| |||||||
Sbjct: 524 cttggatctgcttgaggacggcgtcctcggcgagatgcacccgctggaacgttttgccgg 465
Query: 711 tcttcttctcccacagcgacagcagctcgttgtgcgacagcgtgttggccggcggcttga 770
||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct: 464 tcttcttctcccagagcgccagtagctcgttgtgcgacagcgtgttggccggcggcttga 405
Query: 771 tgtacagcaccttgttctccgcgcgcgggtcgtcggccgccagcaccgtgtacgtggcga 830
||||||| | ||||| ||||||||||||||||||| |||||||||||||| || |||
Sbjct: 404 cgtacagcgtcctgttcaccgcgcgcgggtcgtcggcggccagcaccgtgtaggttccga 345
Query: 831 tgtcgccctcctccacgaacaccgccttggtgtcgccgtcgccgaggacgaccgccttgt 890
|||| ||||| || |||||| | | | |||||||||||||||||||||||| |||||||
Sbjct: 344 tgtccccctcgtcgacgaacgacacatcggtgtcgccgtcgccgaggacgacggccttgt 285
Query: 891 c 891
|
Sbjct: 284 c 284
Score = 54.0 bits (27), Expect = 4e-005
Identities = 51/59 (86%)
Strand = Plus / Minus
Query: 1036 cggctccacgatgcccgtgcggtccacgtccaggccgaactccgacgggaagaacctct 1094
|||||||||| | ||| |||||| |||| ||||||||||||||||||| ||||||||
Sbjct: 136 cggctccacggcggccgagcggtcggcgtcaaggccgaactccgacgggatgaacctct 78
>gb|CW279063.1|CW279063 104_753_11406880_148_35430_052 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11406880, DNA
sequence
Length = 622
Score = 224 bits (113), Expect = 2e-056
Identities = 209/241 (86%)
Strand = Plus / Minus
Query: 651 cttggatctgcttgagcacggcttcctccggcacgtactcccgccggaacgtcttgccgg 710
|||||||||||||||| ||||| ||||| | | | | ||||| ||||||| |||||||
Sbjct: 449 cttggatctgcttgaggacggcgtcctcggcgagatgcacccgctggaacgttttgccgg 390
Query: 711 tcttcttctcccacagcgacagcagctcgttgtgcgacagcgtgttggccggcggcttga 770
||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct: 389 tcttcttctcccagagcgccagtagctcgttgtgcgacagcgtgttggccggcggcttga 330
Query: 771 tgtacagcaccttgttctccgcgcgcgggtcgtcggccgccagcaccgtgtacgtggcga 830
||||||| | ||||| ||||||||||||||||||| |||||||||||||| || |||
Sbjct: 329 cgtacagcgtcctgttcaccgcgcgcgggtcgtcggcggccagcaccgtgtaggttccga 270
Query: 831 tgtcgccctcctccacgaacaccgccttggtgtcgccgtcgccgaggacgaccgccttgt 890
|||| ||||| || |||||| | | | |||||||||||||||||||||||| |||||||
Sbjct: 269 tgtccccctcgtcgacgaacgacacatcggtgtcgccgtcgccgaggacgacggccttgt 210
Query: 891 c 891
|
Sbjct: 209 c 209
Score = 54.0 bits (27), Expect = 4e-005
Identities = 51/59 (86%)
Strand = Plus / Minus
Query: 1036 cggctccacgatgcccgtgcggtccacgtccaggccgaactccgacgggaagaacctct 1094
|||||||||| | ||| |||||| |||| ||||||||||||||||||| ||||||||
Sbjct: 61 cggctccacggcggccgagcggtcggcgtcaaggccgaactccgacgggatgaacctct 3
>gb|CW494632.1|CW494632 fsbb001f286a08f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f286a08, DNA
sequence
Length = 694
Score = 224 bits (113), Expect = 2e-056
Identities = 209/241 (86%)
Strand = Plus / Minus
Query: 651 cttggatctgcttgagcacggcttcctccggcacgtactcccgccggaacgtcttgccgg 710
|||||||||||||||| ||||| ||||| | | | | ||||| ||||||| |||||||
Sbjct: 548 cttggatctgcttgaggacggcgtcctcggcgagatgcacccgctggaacgttttgccgg 489
Query: 711 tcttcttctcccacagcgacagcagctcgttgtgcgacagcgtgttggccggcggcttga 770
||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct: 488 tcttcttctcccagagcgccagtagctcgttgtgcgacagcgtgttggccggcggcttga 429
Query: 771 tgtacagcaccttgttctccgcgcgcgggtcgtcggccgccagcaccgtgtacgtggcga 830
||||||| | ||||| ||||||||||||||||||| |||||||||||||| || |||
Sbjct: 428 cgtacagcgtcctgttcaccgcgcgcgggtcgtcggcggccagcaccgtgtaggttccga 369
Query: 831 tgtcgccctcctccacgaacaccgccttggtgtcgccgtcgccgaggacgaccgccttgt 890
|||| ||||| || |||||| | | | |||||||||||||||||||||||| |||||||
Sbjct: 368 tgtccccctcgtcgacgaacgacacatcggtgtcgccgtcgccgaggacgacggccttgt 309
Query: 891 c 891
|
Sbjct: 308 c 308
Score = 54.0 bits (27), Expect = 4e-005
Identities = 51/59 (86%)
Strand = Plus / Minus
Query: 1036 cggctccacgatgcccgtgcggtccacgtccaggccgaactccgacgggaagaacctct 1094
|||||||||| | ||| |||||| |||| ||||||||||||||||||| ||||||||
Sbjct: 160 cggctccacggcggccgagcggtcggcgtcaaggccgaactccgacgggatgaacctct 102
>gb|BG054346.1|BG054346 OV2_3_B08.b1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA sequence
Length = 214
Score = 212 bits (107), Expect = 7e-053
Identities = 132/139 (94%), Gaps = 1/139 (0%)
Strand = Plus / Minus
Query: 1281 ccgggtcggacggcgccgtgtccctgacgagcgccgaggtggggtggcccagccgcgcgc 1340
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 214 ccgggtcggagggcgccgtgtccctgacgagcgcgacggtggggtggcccagccgcgcgc 155
Query: 1341 tcgccgccacgacgtgcctgcccaggtaccccgtgccgccgaccaccaggatcttg-ctc 1399
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct: 154 tcgccgccacgacgtgccggcccaggtaccccgtgccgccgaccaccaggatcttgagtc 95
Query: 1400 ttctccgacgccatctatc 1418
|||||||||||||||||||
Sbjct: 94 ttctccgacgccatctatc 76
>gb|CW121609.1|CW121609 104_499_11109998_116_34662_053 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11109998, DNA
sequence
Length = 477
Score = 190 bits (96), Expect = 2e-046
Identities = 189/220 (85%)
Strand = Plus / Plus
Query: 651 cttggatctgcttgagcacggcttcctccggcacgtactcccgccggaacgtcttgccgg 710
|||||||||||||||| ||||| ||||| | | | | ||||| ||||||| |||||||
Sbjct: 258 cttggatctgcttgaggacggcgtcctcggcgagatgcacccgctggaacgttttgccgg 317
Query: 711 tcttcttctcccacagcgacagcagctcgttgtgcgacagcgtgttggccggcggcttga 770
||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct: 318 tcttcttctcccagagcgccagtagctcgttgtgcgacagcgtgttggccggcggcttga 377
Query: 771 tgtacagcaccttgttctccgcgcgcgggtcgtcggccgccagcaccgtgtacgtggcga 830
||||||| | ||||| ||||||||||||||||||| |||||||||||||| || |||
Sbjct: 378 cgtacagcgtcctgttcaccgcgcgcgggtcgtcggcggccagcaccgtgtaggttccga 437
Query: 831 tgtcgccctcctccacgaacaccgccttggtgtcgccgtc 870
|||| ||||| || |||||| | | | ||||||||||||
Sbjct: 438 tgtccccctcgtcgacgaacgacacatcggtgtcgccgtc 477
>gb|CW235240.1|CW235240 104_690_11214876_148_37412_040 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11214876, DNA
sequence
Length = 692
Score = 190 bits (96), Expect = 2e-046
Identities = 174/200 (87%)
Strand = Plus / Plus
Query: 651 cttggatctgcttgagcacggcttcctccggcacgtactcccgccggaacgtcttgccgg 710
|||||||||||||||| ||||| ||||| | | | | ||||| ||||||| |||||||
Sbjct: 479 cttggatctgcttgaggacggcgtcctcggcgagatgcacccgctggaacgttttgccgg 538
Query: 711 tcttcttctcccacagcgacagcagctcgttgtgcgacagcgtgttggccggcggcttga 770
||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct: 539 tcttcttctcccagagcgccagtagctcgttgtgcgacagcgtgttggccggcggcttga 598
Query: 771 tgtacagcaccttgttctccgcgcgcgggtcgtcggccgccagcaccgtgtacgtggcga 830
||||||| | ||||| ||||||||||||||||||| |||||||||||||| || |||
Sbjct: 599 cgtacagcgtcctgttcaccgcgcgcgggtcgtcggcggccagcaccgtgtaggttccga 658
Query: 831 tgtcgccctcctccacgaac 850
|||| ||||| || ||||||
Sbjct: 659 tgtccccctcgtcgacgaac 678
>gb|BF420875.1|BF420875 OV1_12_C03.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence
Length = 149
Score = 180 bits (91), Expect = 2e-043
Identities = 115/123 (93%)
Strand = Plus / Minus
Query: 1165 ggagatgaccacgtccgcgcccttcaccgcgctcaccaggctagcctggtcgtacaggtc 1224
||||||||||||||| ||||||||||| ||||| || ||||||||||||||||| |||||
Sbjct: 131 ggagatgaccacgtcggcgcccttcacggcgctgacaaggctagcctggtcgtagaggtc 72
Query: 1225 gcccttgaggagcgtcacgccggcgtcctggaagctcttgagcagcgccgctttggccgg 1284
|||||||| ||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct: 71 gcccttgacgagcgtcacgccggcgtcctggaagctctggagcagcgccgccttggccgg 12
Query: 1285 gtc 1287
|||
Sbjct: 11 gtc 9
>gb|CW279062.1|CW279062 104_753_11406880_116_35426_052 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11406880, DNA
sequence
Length = 737
Score = 170 bits (86), Expect = 2e-040
Identities = 164/190 (86%)
Strand = Plus / Plus
Query: 651 cttggatctgcttgagcacggcttcctccggcacgtactcccgccggaacgtcttgccgg 710
|||||||||||||||| ||||| ||||| | | | | ||||| ||||||| |||||||
Sbjct: 546 cttggatctgcttgaggacggcgtcctcggcgagatgcacccgctggaacgttttgccgg 605
Query: 711 tcttcttctcccacagcgacagcagctcgttgtgcgacagcgtgttggccggcggcttga 770
||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct: 606 tcttcttctcccagagcgccagtagctcgttgtgcgacagcgtgttggccggcggcttga 665
Query: 771 tgtacagcaccttgttctccgcgcgcgggtcgtcggccgccagcaccgtgtacgtggcga 830
||||||| | || || ||||||||||||||||||| | |||||||||||| || |||
Sbjct: 666 cgtacagcgtcctggtcaccgcgcgcgggtcgtcggcgggcagcaccgtgtaggttccga 725
Query: 831 tgtcgccctc 840
|||| |||||
Sbjct: 726 tgtccccctc 735
>gb|CD235299.1|CD235299 SS1_28_E07.g1_A012 Salt-stressed seedlings Sorghum bicolor cDNA clone
SS1_28_E07_A012 5', mRNA sequence
Length = 121
Score = 161 bits (81), Expect = 2e-037
Identities = 108/117 (92%)
Strand = Plus / Minus
Query: 1134 tctggtcggcgatctgcatcgatccgagcacggagatgaccacgtccgcgcccttcaccg 1193
|||||||||||||||||| ||| |||||| |||||||||||||||| ||||||||||| |
Sbjct: 117 tctggtcggcgatctgcagcgacccgagcgcggagatgaccacgtcggcgcccttcacgg 58
Query: 1194 cgctcaccaggctagcctggtcgtacaggtcgcccttgaggagcgtcacgccggcgt 1250
|||| || ||||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct: 57 cgctgacaaggctagcctggtcgtagaggtcgcccttgacgagcgtcacgccggcgt 1
>gb|CN138061.1|CN138061 OX1_61_A09.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_61_A09_A002 5', mRNA sequence
Length = 148
Score = 161 bits (81), Expect = 2e-037
Identities = 87/89 (97%)
Strand = Plus / Minus
Query: 1330 cagccgcgcgctcgccgccacgacgtgcctgcccaggtaccccgtgccgccgaccaccag 1389
||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct: 148 cagccgcgcgctcgccgccacgacgcgccggcccaggtaccccgtgccgccgaccaccag 89
Query: 1390 gatcttgctcttctccgacgccatctatc 1418
|||||||||||||||||||||||||||||
Sbjct: 88 gatcttgctcttctccgacgccatctatc 60
>gb|AI724666.1|AI724666 RHIZ1_11_E03.y1_A001 Rhizome1 (RHIZ1) Sorghum halepense cDNA, mRNA
sequence
Length = 316
Score = 155 bits (78), Expect = 1e-035
Identities = 90/94 (95%)
Strand = Plus / Minus
Query: 484 tcagagaaagcggttgaggtactcgtcgacggtggtgtacttgacatccgggtacagttc 543
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct: 97 tcagaggaagcggttgaggtactcgtcgacggtggtgtacttgacgtccgggtacagctc 38
Query: 544 gctggcgtccacccccttggccgggtcgatctcg 577
| ||||||||||||||||||||||||||||||||
Sbjct: 37 ggtggcgtccacccccttggccgggtcgatctcg 4
>gb|BG487576.1|BG487576 EM1_67_G03.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA sequence
Length = 137
Score = 101 bits (51), Expect = 2e-019
Identities = 57/59 (96%)
Strand = Plus / Minus
Query: 1360 gcccaggtaccccgtgccgccgaccaccaggatcttgctcttctccgacgccatctatc 1418
||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct: 133 gcccaggtaccccgtgccgccgaccaccaggatcttgctgttgtccgacgccatctatc 75
>gb|CW030831.1|CW030831 104_259_10500451_114_30397 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10500451, DNA
sequence
Length = 761
Score = 67.9 bits (34), Expect = 2e-009
Identities = 52/58 (89%)
Strand = Plus / Minus
Query: 496 gttgaggtactcgtcgacggtggtgtacttgacatccgggtacagttcgctggcgtcc 553
||||||||| |||||||| ||||||||||| || ||||||||||| |||| |||||||
Sbjct: 137 gttgaggtaatcgtcgaccgtggtgtacttcacgtccgggtacagctcgccggcgtcc 80
>gb|CW229209.1|CW229209 104_670_11207182_148_37261_089 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11207182, DNA
sequence
Length = 650
Score = 67.9 bits (34), Expect = 2e-009
Identities = 46/50 (92%)
Strand = Plus / Plus
Query: 491 aagcggttgaggtactcgtcgacggtggtgtacttgacatccgggtacag 540
|||||||| | |||||||||||| |||||||||||||| |||||||||||
Sbjct: 595 aagcggttcacgtactcgtcgaccgtggtgtacttgacgtccgggtacag 644
>gb|CW232918.1|CW232918 104_685_11213076_148_37425_036 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11213076, DNA
sequence
Length = 682
Score = 67.9 bits (34), Expect = 2e-009
Identities = 52/58 (89%)
Strand = Plus / Plus
Query: 496 gttgaggtactcgtcgacggtggtgtacttgacatccgggtacagttcgctggcgtcc 553
||||||||| |||||||| ||||||||||| || ||||||||||| |||| |||||||
Sbjct: 134 gttgaggtaatcgtcgaccgtggtgtacttcacgtccgggtacagctcgccggcgtcc 191
>gb|CW237023.1|CW237023 104_693_11215938_116_37513_075 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11215938, DNA
sequence
Length = 654
Score = 67.9 bits (34), Expect = 2e-009
Identities = 52/58 (89%)
Strand = Plus / Minus
Query: 496 gttgaggtactcgtcgacggtggtgtacttgacatccgggtacagttcgctggcgtcc 553
||||||||| |||||||| ||||||||||| || ||||||||||| |||| |||||||
Sbjct: 182 gttgaggtaatcgtcgaccgtggtgtacttcacgtccgggtacagctcgccggcgtcc 125
>gb|CW237024.1|CW237024 104_693_11215938_148_37518_075 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11215938, DNA
sequence
Length = 714
Score = 67.9 bits (34), Expect = 2e-009
Identities = 52/58 (89%)
Strand = Plus / Plus
Query: 496 gttgaggtactcgtcgacggtggtgtacttgacatccgggtacagttcgctggcgtcc 553
||||||||| |||||||| ||||||||||| || ||||||||||| |||| |||||||
Sbjct: 654 gttgaggtaatcgtcgaccgtggtgtacttcacgtccgggtacagctcgccggcgtcc 711
>gb|CW318434.1|CW318434 104_810_11473947_148_35869_006 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11473947, DNA
sequence
Length = 667
Score = 67.9 bits (34), Expect = 2e-009
Identities = 52/58 (89%)
Strand = Plus / Minus
Query: 496 gttgaggtactcgtcgacggtggtgtacttgacatccgggtacagttcgctggcgtcc 553
||||||||| |||||||| ||||||||||| || ||||||||||| |||| |||||||
Sbjct: 490 gttgaggtaatcgtcgaccgtggtgtacttcacgtccgggtacagctcgccggcgtcc 433
>gb|CW321644.1|CW321644 104_815_11475664_148_35941_062 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11475664, DNA
sequence
Length = 675
Score = 67.9 bits (34), Expect = 2e-009
Identities = 52/58 (89%)
Strand = Plus / Plus
Query: 496 gttgaggtactcgtcgacggtggtgtacttgacatccgggtacagttcgctggcgtcc 553
||||||||| |||||||| ||||||||||| || ||||||||||| |||| |||||||
Sbjct: 301 gttgaggtaatcgtcgaccgtggtgtacttcacgtccgggtacagctcgccggcgtcc 358
>gb|CW486271.1|CW486271 fsbb001f249g24k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f249g24, DNA
sequence
Length = 729
Score = 67.9 bits (34), Expect = 2e-009
Identities = 52/58 (89%)
Strand = Plus / Plus
Query: 496 gttgaggtactcgtcgacggtggtgtacttgacatccgggtacagttcgctggcgtcc 553
||||||||| |||||||| ||||||||||| || ||||||||||| |||| |||||||
Sbjct: 297 gttgaggtaatcgtcgaccgtggtgtacttcacgtccgggtacagctcgccggcgtcc 354
>gb|CW305273.1|CW305273 104_790_11466229_116_37439_055 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11466229, DNA
sequence
Length = 700
Score = 54.0 bits (27), Expect = 4e-005
Identities = 39/43 (90%)
Strand = Plus / Minus
Query: 253 ataactcatcataaatcccttttgacatgaaccttaatctatc 295
|||||||||||| |||| |||||| |||||| |||||||||||
Sbjct: 688 ataactcatcatcaatctcttttggcatgaatcttaatctatc 646
>gb|CW305274.1|CW305274 104_790_11466229_148_37440_055 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11466229, DNA
sequence
Length = 718
Score = 54.0 bits (27), Expect = 4e-005
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 253 ataactcatcataaatcccttttgacatgaaccttaatctatc 295
|||||||||||| |||| |||||| |||||| |||||||||||
Sbjct: 491 ataactcatcatcaatctcttttggcatgaatcttaatctatc 533
>gb|CW344473.1|CW344473 104_847_11487972_116_36204_046 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11487972, DNA
sequence
Length = 732
Score = 50.1 bits (25), Expect = 6e-004
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 705 tgccggtcttcttctcccacagcgacagcagctcgttgtgcgaca 749
||||||||||||||||||||| ||| | ||||||||||| ||||
Sbjct: 649 tgccggtcttcttctcccacatcgagatgagctcgttgtgggaca 693
>gb|CW344474.1|CW344474 104_847_11487972_148_36203_046 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11487972, DNA
sequence
Length = 659
Score = 50.1 bits (25), Expect = 6e-004
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 705 tgccggtcttcttctcccacagcgacagcagctcgttgtgcgaca 749
||||||||||||||||||||| ||| | ||||||||||| ||||
Sbjct: 113 tgccggtcttcttctcccacatcgagatgagctcgttgtgggaca 69
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 459,299
Number of Sequences: 832831
Number of extensions: 459299
Number of successful extensions: 132203
Number of sequences better than 0.5: 73
Number of HSP's better than 0.5 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 131977
Number of HSP's gapped (non-prelim): 201
length of query: 1446
length of database: 491,359,669
effective HSP length: 20
effective length of query: 1426
effective length of database: 474,703,049
effective search space: 676926547874
effective search space used: 676926547874
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)