BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 4424417.2.1
(1137 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BG052001.1|BG052001 RHIZ2_7_F11.g1_A003 Rhizome2 (RHIZ2)... 793 0.0
gb|CW032099.1|CW032099 104_261_10501183_114_30363 Sorghum m... 781 0.0
gb|CN145887.1|CN145887 WOUND1_36_A11.b1_A002 Wounded leaves... 777 0.0
gb|CN147510.1|CN147510 WOUND1_50_E09.b1_A002 Wounded leaves... 755 0.0
gb|CN149533.1|CN149533 WOUND1_63_H02.b1_A002 Wounded leaves... 708 0.0
gb|CW391632.1|CW391632 fsbb001f077n22k0 Sorghum methylation... 688 0.0
gb|CF480170.1|CF480170 POL1_64_D07.b1_A002 Pollen Sorghum b... 636 e-180
gb|CF484412.1|CF484412 POL1_25_D12.b1_A002 Pollen Sorghum b... 595 e-168
gb|CF487816.1|CF487816 POL1_46_C06.b1_A002 Pollen Sorghum b... 567 e-160
gb|CN148236.1|CN148236 WOUND1_55_B09.b1_A002 Wounded leaves... 563 e-158
gb|CF757955.1|CF757955 DSAF1_25_E02.g1_A011 Drought-stresse... 553 e-155
gb|CN140813.1|CN140813 OX1_47_F12.b1_A002 Oxidatively-stres... 504 e-140
gb|BG048260.1|BG048260 OV1_16_A02.g1_A002 Ovary 1 (OV1) Sor... 478 e-133
gb|CW222417.1|CW222417 104_657_11202363_116_37176_002 Sorgh... 387 e-105
gb|CW310290.1|CW310290 104_799_11469637_148_35749_057 Sorgh... 355 6e-096
gb|CN151965.1|CN151965 WOUND1_78_G12.g1_A002 Wounded leaves... 297 1e-078
gb|BE593454.1|BE593454 WS1_98_A11.b1_A002 Water-stressed 1 ... 281 7e-074
gb|CW310289.1|CW310289 104_799_11469637_116_35745_057 Sorgh... 228 9e-058
gb|BM317823.1|BM317823 OV1_16_A02.b9_A002 Ovary 1 (OV1) Sor... 143 4e-032
gb|CN147591.1|CN147591 WOUND1_50_E09.g1_A002 Wounded leaves... 127 2e-027
gb|BG052876.1|BG052876 RHIZ2_15_C10.g1_A003 Rhizome2 (RHIZ2... 121 1e-025
gb|CW021131.1|CW021131 104_109_10409366_114_30490 Sorghum m... 105 9e-021
gb|CW217046.1|CW217046 104_650_11195446_148_37131_093 Sorgh... 96 9e-018
gb|CW243962.1|CW243962 104_704_11220332_148_37583_070 Sorgh... 96 9e-018
gb|CW404465.1|CW404465 fsbb001f096j22f0 Sorghum methylation... 96 9e-018
gb|CW404466.1|CW404466 fsbb001f096j22k0 Sorghum methylation... 96 9e-018
gb|CD203869.1|CD203869 HS1_2_H07.b1_A012 Heat-shocked seedl... 96 9e-018
gb|CD225116.1|CD225116 CCC1_38_B06.b1_A007 Callus culture/c... 96 9e-018
gb|CD227113.1|CD227113 CCC1_4_B10.b1_A007 Callus culture/ce... 96 9e-018
gb|CN138045.1|CN138045 OX1_61_H04.b1_A002 Oxidatively-stres... 96 9e-018
gb|CW222418.1|CW222418 104_657_11202363_148_37175_002 Sorgh... 94 3e-017
gb|CN145955.1|CN145955 WOUND1_36_A11.g1_A002 Wounded leaves... 94 3e-017
gb|CX622493.1|CX622493 GABR1_64_G03.b2_A002 GA- or brassino... 90 5e-016
gb|CN149616.1|CN149616 WOUND1_63_H02.g1_A002 Wounded leaves... 88 2e-015
gb|CD462540.1|CD462540 ETH1_38_C08.b1_A002 Ethylene-treated... 86 8e-015
gb|CW250954.1|CW250954 104_713_11223665_148_35058_073 Sorgh... 82 1e-013
gb|CW409779.1|CW409779 fsbb001f104d18f0 Sorghum methylation... 82 1e-013
gb|CW479152.1|CW479152 fsbb001f237h02f0 Sorghum methylation... 82 1e-013
gb|CF430017.1|CF430017 PH1_25_A07.g1_A002 Phosphorous-defic... 76 8e-012
gb|CW107624.1|CW107624 104_478_11096696_148_34482_032 Sorgh... 74 3e-011
gb|BZ422560.1|BZ422560 id55d04.b1 WGS-SbicolorF (DH5a methy... 72 1e-010
gb|CL196288.1|CL196288 104_422_10942954_114_32317_041 Sorgh... 72 1e-010
gb|CW027560.1|CW027560 104_254_10498588_114_30395 Sorghum m... 72 1e-010
gb|CW479571.1|CW479571 fsbb001f238c15k0 Sorghum methylation... 72 1e-010
gb|CW406041.1|CW406041 fsbb001f098n24f0 Sorghum methylation... 70 5e-010
gb|BF587706.1|BF587706 FM1_39_F09.g1_A003 Floral-Induced Me... 70 5e-010
gb|BG559907.1|BG559907 RHIZ2_75_B06.g1_A003 Rhizome2 (RHIZ2... 70 5e-010
gb|BE598733.1|BE598733 PI1_81_A05.b1_A002 Pathogen induced ... 68 2e-009
gb|CN138126.1|CN138126 OX1_61_H04.g1_A002 Oxidatively-stres... 68 2e-009
gb|BG159378.1|BG159378 OV2_7_A11.g1_A002 Ovary 2 (OV2) Sorg... 62 1e-007
gb|BG355941.2|BG355941 EM1_18_E06.g1_A002 Embryo 1 (EM1) So... 62 1e-007
gb|CD229956.1|CD229956 SS1_40_H11.b1_A012 Salt-stressed see... 62 1e-007
gb|CN143114.1|CN143114 WOUND1_14_E12.b1_A002 Wounded leaves... 62 1e-007
gb|CN148779.1|CN148779 WOUND1_58_F02.g1_A002 Wounded leaves... 62 1e-007
gb|CX622436.1|CX622436 GABR1_64_A04.b2_A002 GA- or brassino... 62 1e-007
gb|CW217045.1|CW217045 104_650_11195446_116_37132_093 Sorgh... 60 5e-007
gb|CW243961.1|CW243961 104_704_11220332_116_37584_070 Sorgh... 60 5e-007
gb|CN134840.1|CN134840 OX1_28_G06.g1_A002 Oxidatively-stres... 56 7e-006
gb|CN148699.1|CN148699 WOUND1_58_F02.b1_A002 Wounded leaves... 56 7e-006
gb|CX614740.1|CX614740 GABR1_16_B02.b1_A002 GA- or brassino... 56 7e-006
gb|BG241324.1|BG241324 RHIZ2_49_A04.g1_A003 Rhizome2 (RHIZ2... 54 3e-005
gb|BG465898.1|BG465898 RHIZ2_46_A02.g1_A003 Rhizome2 (RHIZ2... 54 3e-005
gb|BG466123.1|BG466123 RHIZ2_48_H07.g1_A003 Rhizome2 (RHIZ2... 54 3e-005
gb|CD428180.1|CD428180 ETH1_28_C02.b1_A002 Ethylene-treated... 54 3e-005
gb|CF429876.1|CF429876 PH1_25_A07.b1_A002 Phosphorous-defic... 54 3e-005
gb|CF430956.1|CF430956 NIT1_4_F06.b1_A002 Nitrogen-deficien... 54 3e-005
gb|CF431001.1|CF431001 NIT1_4_D08.b1_A002 Nitrogen-deficien... 54 3e-005
gb|CF432804.1|CF432804 NIT1_19_E10.b1_A002 Nitrogen-deficie... 54 3e-005
gb|CX608350.1|CX608350 ANR1_38_C09.b1_A002 Anaerobic roots ... 54 3e-005
gb|CL193155.1|CL193155 104_416_10940738_114_32291_005 Sorgh... 50 5e-004
gb|CW081000.1|CW081000 104_416_10940738_114_32342_005 Sorgh... 50 5e-004
gb|CW122627.1|CW122627 104_501_11110773_116_34677_085 Sorgh... 50 5e-004
gb|CW169316.1|CW169316 104_579_11154609_116_36503_043 Sorgh... 50 5e-004
gb|CW187775.1|CW187775 104_607_11172659_116_36725_044 Sorgh... 50 5e-004
gb|CW202161.1|CW202161 104_628_11184948_116_37091_044 Sorgh... 50 5e-004
gb|CW242040.1|CW242040 104_701_11219109_148_37552_087 Sorgh... 50 5e-004
gb|CW288841.1|CW288841 104_767_11412165_148_35537_087 Sorgh... 50 5e-004
gb|CW345548.1|CW345548 104_848_11488552_116_36212_054 Sorgh... 50 5e-004
gb|CW465934.1|CW465934 fsbb001f216o21k0 Sorghum methylation... 50 5e-004
gb|CF427705.1|CF427705 PH1_10_G01.b1_A002 Phosphorous-defic... 50 5e-004
gb|CF431564.1|CF431564 NIT1_8_B02.b1_A002 Nitrogen-deficien... 50 5e-004
gb|CN134387.1|CN134387 OX1_26_C04.b1_A002 Oxidatively-stres... 50 5e-004
gb|CL162009.1|CL162009 104_354_10806118_116_31831_022 Sorgh... 46 0.007
gb|CW133758.1|CW133758 104_517_11116936_116_34811_054 Sorgh... 46 0.007
gb|CW419090.1|CW419090 fsbb001f123m21f0 Sorghum methylation... 46 0.007
gb|BZ337340.1|BZ337340 ia86g04.g1 WGS-SbicolorF (JM107 adap... 44 0.028
gb|CW111668.1|CW111668 104_485_11104448_116_34540_030 Sorgh... 44 0.028
gb|CW231607.1|CW231607 104_680_11211213_116_37343_081 Sorgh... 44 0.028
gb|CW468411.1|CW468411 fsbb001f220j08f0 Sorghum methylation... 44 0.028
gb|BZ346576.1|BZ346576 hv20f07.b1 WGS-SbicolorF (JM107 adap... 42 0.11
gb|CW027561.1|CW027561 104_254_10498588_116_30396 Sorghum m... 42 0.11
gb|CW035559.1|CW035559 104_266_10503231_115_30377 Sorghum m... 42 0.11
gb|CW038410.1|CW038410 104_270_10504910_115_30386 Sorghum m... 42 0.11
gb|CW200395.1|CW200395 104_625_11184043_148_36862_066 Sorgh... 42 0.11
gb|CW277800.1|CW277800 104_752_11406219_116_35679_016 Sorgh... 42 0.11
gb|CW332968.1|CW332968 104_830_11481693_148_36039_083 Sorgh... 42 0.11
gb|CW345489.1|CW345489 104_848_11488515_148_36206_006 Sorgh... 42 0.11
gb|CW493108.1|CW493108 fsbb001f283l13f0 Sorghum methylation... 42 0.11
gb|CN131793.1|CN131793 OX1_2_G05.b1_A002 Oxidatively-stress... 42 0.11
gb|BZ335299.1|BZ335299 hx96g11.b1 WGS-SbicolorF (JM107 adap... 40 0.44
gb|BZ366534.1|BZ366534 ic97f12.b1 WGS-SbicolorF (JM107 adap... 40 0.44
gb|CL169661.1|CL169661 104_368_10812799_116_31809_271 Sorgh... 40 0.44
gb|CW048512.1|CW048512 104_287_10513437_114_30211 Sorghum m... 40 0.44
gb|CW118752.1|CW118752 104_495_11108380_148_34631_010 Sorgh... 40 0.44
gb|CW147992.1|CW147992 104_542_11140181_116_35000_023 Sorgh... 40 0.44
gb|CW168480.1|CW168480 104_578_11154163_116_36599_078 Sorgh... 40 0.44
gb|CW169551.1|CW169551 104_579_11154733_116_36499_053 Sorgh... 40 0.44
gb|CW277393.1|CW277393 104_751_11406003_148_35413_008 Sorgh... 40 0.44
gb|CW314826.1|CW314826 104_805_11472033_116_35817_037 Sorgh... 40 0.44
gb|CW391631.1|CW391631 fsbb001f077n22f0 Sorghum methylation... 40 0.44
gb|CW412517.1|CW412517 fsbb001f108c24f0 Sorghum methylation... 40 0.44
gb|CW423976.1|CW423976 fsbb001f134b06f0 Sorghum methylation... 40 0.44
>gb|BG052001.1|BG052001 RHIZ2_7_F11.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 665
Score = 793 bits (400), Expect = 0.0
Identities = 528/570 (92%), Gaps = 3/570 (0%)
Strand = Plus / Plus
Query: 1 cagccccatgaagtaccacggcctgaacgtgccggggaagcacgtcggcgtgatggggct 60
|||||||||||||||||||||||||||| ||| |||||||||||||||||| |||||||
Sbjct: 50 cagccccatgaagtaccacggcctgaacaagcccgggaagcacgtcggcgtggtggggct 109
Query: 61 gggaggcctgggccacgtcgccgtcaagttcgccaaggcg---ttcggggccaaggtcac 117
||| |||||||||||||||||||||||| ||||||||||| |||||| ||||||||
Sbjct: 110 gggcggcctgggccacgtcgccgtcaagctcgccaaggcggcgttcgggatgaaggtcac 169
Query: 118 ggtcatcagcacgtcgcctgggaagaagcaggaggcgctcgaccggcttggcgccgacgc 177
||||||||||||||||| ||||||||||||||||| | |||||||| |||||||||||
Sbjct: 170 cgtcatcagcacgtcgccggggaagaagcaggaggccatggaccggctcggcgccgacgc 229
Query: 178 cttcgtcgtcagcaaggacgccgaagaaatgaaggcggctgcgagcaccatggacggcat 237
|||||||||||| ||||||||||| || ||||||||||| |||||||||||||| |||||
Sbjct: 230 cttcgtcgtcagtaaggacgccgaggagatgaaggcggcggcgagcaccatggatggcat 289
Query: 238 catcaacacggtgtcggcgaacctcaccttggccccgtacatgggcctgctcaagcccaa 297
||||||||||||||| || ||| || ||||||| |||| |||| ||||||||||||||||
Sbjct: 290 catcaacacggtgtccgccaacatccccttggcgccgttcatgagcctgctcaagcccaa 349
Query: 298 cggcaagatgatcatggtcggcctgcccaccaagcctctcgagatcccgccctttgatct 357
|||||||||| ||||||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct: 350 cggcaagatggtcatggtcggcctgcccaccaaggctctcgagatcccgccgtttgatct 409
Query: 358 catcattgggaacaagaccctggccgggagctgcatcggcggcatgagggacacgcagga 417
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 410 catcatggggaacaagaccctggcggggagctgcatcggcggcatgagggacacgcagga 469
Query: 418 gatgatcaacgtggcggccaagcacggcgtgacggcggacatagaactggtggccgcgga 477
|||| || |||||||||||||||||||||||||||||||||||||||| |||| ||| ||
Sbjct: 470 gatgctcgacgtggcggccaagcacggcgtgacggcggacatagaactcgtggacgccga 529
Query: 478 ctacgtgaacacggccatggagcgcctggccaaggctgacgtcaggtaccgcttcgtcat 537
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 530 ctacgtgaacacggccatggagcgcctcgccaaggctgacgtcaggtaccgcttcgtcat 589
Query: 538 cgacatcggcaacaccctcaagaattcaga 567
||||||||||||||||||||||||| ||||
Sbjct: 590 cgacatcggcaacaccctcaagaatgcaga 619
>gb|CW032099.1|CW032099 104_261_10501183_114_30363 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10501183, DNA
sequence
Length = 577
Score = 781 bits (394), Expect = 0.0
Identities = 522/564 (92%), Gaps = 3/564 (0%)
Strand = Plus / Minus
Query: 1 cagccccatgaagtaccacggcctgaacgtgccggggaagcacgtcggcgtgatggggct 60
|||||||||||||||||||||||||||| ||| |||||||||||||||||| |||||||
Sbjct: 564 cagccccatgaagtaccacggcctgaacaagcccgggaagcacgtcggcgtgctggggct 505
Query: 61 gggaggcctgggccacgtcgccgtcaagttcgccaaggcg---ttcggggccaaggtcac 117
||| ||||| |||||||||||||||||| ||||||||||| |||||| ||||||||
Sbjct: 504 gggcggccttggccacgtcgccgtcaagctcgccaaggcggcgttcgggatgaaggtcac 445
Query: 118 ggtcatcagcacgtcgcctgggaagaagcaggaggcgctcgaccggcttggcgccgacgc 177
||||||||||||||||| ||||||||||||||||| | |||||||| |||||||||||
Sbjct: 444 cgtcatcagcacgtcgccggggaagaagcaggaggccatggaccggctcggcgccgacgc 385
Query: 178 cttcgtcgtcagcaaggacgccgaagaaatgaaggcggctgcgagcaccatggacggcat 237
|||||||||||| ||||||||||| || ||||||||||| |||||||||||||| |||||
Sbjct: 384 cttcgtcgtcagtaaggacgccgaggagatgaaggcggcggcgagcaccatggatggcat 325
Query: 238 catcaacacggtgtcggcgaacctcaccttggccccgtacatgggcctgctcaagcccaa 297
||||||||||||||| || ||| || || |||| |||| |||| ||||||||||||||||
Sbjct: 324 catcaacacggtgtccgccaacatccccctggcgccgttcatgagcctgctcaagcccaa 265
Query: 298 cggcaagatgatcatggtcggcctgcccaccaagcctctcgagatcccgccctttgatct 357
|||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct: 264 cggcaagatgatcatggtcggcctgcccaccaaggctctcgagatcccgccgtttgatct 205
Query: 358 catcattgggaacaagaccctggccgggagctgcatcggcggcatgagggacacgcagga 417
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 204 catcatggggaacaagaccctggcggggagctgcatcggcggcatgagggacacgcagga 145
Query: 418 gatgatcaacgtggcggccaagcacggcgtgacggcggacatagaactggtggccgcgga 477
|||| || ||||||||||||||||||||||||||||||||||||| ||||||| ||| ||
Sbjct: 144 gatgctcgacgtggcggccaagcacggcgtgacggcggacatagagctggtggacgccga 85
Query: 478 ctacgtgaacacggccatggagcgcctggccaaggctgacgtcaggtaccgcttcgtcat 537
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 84 ctacgtgaacacggccatggagcgcctcgccaaggctgacgtcaggtaccgcttcgtcat 25
Query: 538 cgacatcggcaacaccctcaagaa 561
||||||||||||||||||||||||
Sbjct: 24 cgacatcggcaacaccctcaagaa 1
>gb|CN145887.1|CN145887 WOUND1_36_A11.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_36_A11_A002 3', mRNA sequence
Length = 819
Score = 777 bits (392), Expect = 0.0
Identities = 526/570 (92%), Gaps = 3/570 (0%)
Strand = Plus / Plus
Query: 1 cagccccatgaagtaccacggcctgaacgtgccggggaagcacgtcggcgtgatggggct 60
|||||||||||||||||||||||||||| ||| |||||||||||||||||| |||||||
Sbjct: 90 cagccccatgaagtaccacggcctgaacaagcccgggaagcacgtcggcgtgctggggct 149
Query: 61 gggaggcctgggccacgtcgccgtcaagttcgccaaggcg---ttcggggccaaggtcac 117
||| ||||| |||||||||||||||||| ||||||||||| |||||| ||||||||
Sbjct: 150 gggcggccttggccacgtcgccgtcaagctcgccaaggcggcgttcgggatgaaggtcac 209
Query: 118 ggtcatcagcacgtcgcctgggaagaagcaggaggcgctcgaccggcttggcgccgacgc 177
||||||||||||||||| ||||||||||||||||| | |||||||| |||||||||||
Sbjct: 210 cgtcatcagcacgtcgccggggaagaagcaggaggccatggaccggctcggcgccgacgc 269
Query: 178 cttcgtcgtcagcaaggacgccgaagaaatgaaggcggctgcgagcaccatggacggcat 237
|||||||||||| ||||||||||| || ||||||||||| |||||||||||||| |||||
Sbjct: 270 cttcgtcgtcagtaaggacgccgaggagatgaaggcggcggcgagcaccatggatggcat 329
Query: 238 catcaacacggtgtcggcgaacctcaccttggccccgtacatgggcctgctcaagcccaa 297
||||||||||||||| || ||| || || |||| |||| |||| ||||||||||||||||
Sbjct: 330 catcaacacggtgtccgccaacatccccctggcgccgttcatgagcctgctcaagcccaa 389
Query: 298 cggcaagatgatcatggtcggcctgcccaccaagcctctcgagatcccgccctttgatct 357
|||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct: 390 cggcaagatgatcatggtcggcctgcccaccaaggctctcgagatcccgccgtttgatct 449
Query: 358 catcattgggaacaagaccctggccgggagctgcatcggcggcatgagggacacgcagga 417
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 450 catcatggggaacaagaccctggcggggagctgcatcggcggcatgagggacacgcagga 509
Query: 418 gatgatcaacgtggcggccaagcacggcgtgacggcggacatagaactggtggccgcgga 477
|||| || ||||||||||||||||||||||||||||||||||||| ||||||| ||| ||
Sbjct: 510 gatgctcgacgtggcggccaagcacggcgtgacggcggacatagagctggtggacgccga 569
Query: 478 ctacgtgaacacggccatggagcgcctggccaaggctgacgtcaggtaccgcttcgtcat 537
||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct: 570 ctacgtgaacacggccatggagcgcctcgccaaggctgacgtcaggtaccgcctcgtcat 629
Query: 538 cgacatcggcaacaccctcaagaattcaga 567
||||||||||||||||||||||||| ||||
Sbjct: 630 cgacatcggcaacaccctcaagaatgcaga 659
>gb|CN147510.1|CN147510 WOUND1_50_E09.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_50_E09_A002 3', mRNA sequence
Length = 725
Score = 755 bits (381), Expect = 0.0
Identities = 525/571 (91%), Gaps = 4/571 (0%)
Strand = Plus / Plus
Query: 1 cagccccatgaagtaccacggcctgaacgtgccggggaagcacgtcggcgtga-tggggc 59
|||||||||||||||||||||||||||| ||| |||||||||||||||||| ||||||
Sbjct: 25 cagccccatgaagtaccacggcctgaacaagcccgggaagcacgtcggcgtgtctggggc 84
Query: 60 tgggaggcctgggccacgtcgccgtcaagttcgccaaggcg---ttcggggccaaggtca 116
|||| ||| | |||||||||||||||||| ||||||||||| |||||| |||||||
Sbjct: 85 tgggcggctttggccacgtcgccgtcaagctcgccaaggcggcgttcgggatgaaggtca 144
Query: 117 cggtcatcagcacgtcgcctgggaagaagcaggaggcgctcgaccggcttggcgccgacg 176
| ||||||||||||||||| ||||||||||||||||| | |||||||| ||||||||||
Sbjct: 145 ccgtcatcagcacgtcgccggggaagaagcaggaggccatggaccggctaggcgccgacg 204
Query: 177 ccttcgtcgtcagcaaggacgccgaagaaatgaaggcggctgcgagcaccatggacggca 236
||||||| ||||| ||||||||||| || ||||||||||| |||||||||||||| ||||
Sbjct: 205 ccttcgttgtcagtaaggacgccgaggagatgaaggcggcggcgagcaccatggatggca 264
Query: 237 tcatcaacacggtgtcggcgaacctcaccttggccccgtacatgggcctgctcaagccca 296
|||||||||||||||| || ||| || || |||| |||| |||| |||||||||||||||
Sbjct: 265 tcatcaacacggtgtctgccaacatccccctggcgccgttcatgagcctgctcaagccca 324
Query: 297 acggcaagatgatcatggtcggcctgcccaccaagcctctcgagatcccgccctttgatc 356
||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct: 325 acggcaagatgatcatggtcggcctgcccaccaaggctctcgagatcccgccgtttgatc 384
Query: 357 tcatcattgggaacaagaccctggccgggagctgcatcggcggcatgagggacacgcagg 416
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 385 tcatcatggggaacaagaccctggcggggagctgcatcggcggcatgagggacacgcagg 444
Query: 417 agatgatcaacgtggcggccaagcacggcgtgacggcggacatagaactggtggccgcgg 476
||||| || ||||||||||||||||||||||||||||||||||||| ||||||| ||| |
Sbjct: 445 agatgctcgacgtggcggccaagcacggcgtgacggcggacatagagctggtggacgccg 504
Query: 477 actacgtgaacacggccatggagcgcctggccaaggctgacgtcaggtaccgcttcgtca 536
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 505 actacgtgaacacggccatggagcgcctcgccaaggctgacgtcaggtaccgcttcgtca 564
Query: 537 tcgacatcggcaacaccctcaagaattcaga 567
|||||||||||||||||||||||||| ||||
Sbjct: 565 tcgacatcggcaacaccctcaagaatgcaga 595
>gb|CN149533.1|CN149533 WOUND1_63_H02.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_63_H02_A002 3', mRNA sequence
Length = 727
Score = 708 bits (357), Expect = 0.0
Identities = 482/523 (92%), Gaps = 3/523 (0%)
Strand = Plus / Plus
Query: 48 gcgtgatggggctgggaggcctgggccacgtcgccgtcaagttcgccaaggcg---ttcg 104
||||| |||||||||| ||||| |||||||||||||||||| ||||||||||| ||||
Sbjct: 1 gcgtgctggggctgggcggccttggccacgtcgccgtcaagctcgccaaggcggcgttcg 60
Query: 105 gggccaaggtcacggtcatcagcacgtcgcctgggaagaagcaggaggcgctcgaccggc 164
|| |||||||| ||||||||||||||||| ||||||||||||||||| | |||||||
Sbjct: 61 ggatgaaggtcaccgtcatcagcacgtcgccggggaagaagcaggaggccatggaccggc 120
Query: 165 ttggcgccgacgccttcgtcgtcagcaaggacgccgaagaaatgaaggcggctgcgagca 224
||||||||||||| ||||||||||| ||||||||||| || ||||||||||| |||||||
Sbjct: 121 ttggcgccgacgctttcgtcgtcagtaaggacgccgaggagatgaaggcggcggcgagca 180
Query: 225 ccatggacggcatcatcaacacggtgtcggcgaacctcaccttggccccgtacatgggcc 284
||||||| |||||||||||||||||||| || ||| || || ||| |||| |||| |||
Sbjct: 181 ccatggatggcatcatcaacacggtgtccgccaacatcccccgggcgccgttcatgagcc 240
Query: 285 tgctcaagcccaacggcaagatgatcatggtcggcctgcccaccaagcctctcgagatcc 344
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 241 tgctcaagcccaacggcaagatgatcatggtcggcctgcccaccaaggctctcgagatcc 300
Query: 345 cgccctttgatctcatcattgggaacaagaccctggccgggagctgcatcggcggcatga 404
|||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct: 301 cgccgtttgatctcatcatggggaacaagaccctggcggggagctgcatcggcggcatga 360
Query: 405 gggacacgcaggagatgatcaacgtggcggccaagcacggcgtgacggcggacatagaac 464
||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| |
Sbjct: 361 gggacacgcaggagatgctcgacgtggcggccaagcacggcgtgacggcggacatagagc 420
Query: 465 tggtggccgcggactacgtgaacacggccatggagcgcctggccaaggctgacgtcaggt 524
|||||| ||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 421 tggtggacgccgactacgtgaacacggccatggagcgcctcgccaaggctgacgtcaggt 480
Query: 525 accgcttcgtcatcgacatcggcaacaccctcaagaattcaga 567
|||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 481 accgcttcgtcatcgacatcggcaacaccctcaagaatgcaga 523
>gb|CW391632.1|CW391632 fsbb001f077n22k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f077n22, DNA
sequence
Length = 708
Score = 688 bits (347), Expect = 0.0
Identities = 460/497 (92%), Gaps = 3/497 (0%)
Strand = Plus / Minus
Query: 74 cacgtcgccgtcaagttcgccaaggcg---ttcggggccaaggtcacggtcatcagcacg 130
||||||||||||||| ||||||||||| |||||| |||||||| ||||||||||||
Sbjct: 708 cacgtcgccgtcaagctcgccaaggcggcgttcgggatgaaggtcaccgtcatcagcacg 649
Query: 131 tcgcctgggaagaagcaggaggcgctcgaccggcttggcgccgacgccttcgtcgtcagc 190
||||| ||||||||||||||||| | |||||||| |||||||||||||||||||||||
Sbjct: 648 tcgccggggaagaagcaggaggccatggaccggctcggcgccgacgccttcgtcgtcagt 589
Query: 191 aaggacgccgaagaaatgaaggcggctgcgagcaccatggacggcatcatcaacacggtg 250
||||||||||| || ||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct: 588 aaggacgccgaggagatgaaggcggcggcgagcaccatggatggcatcatcaacacggtg 529
Query: 251 tcggcgaacctcaccttggccccgtacatgggcctgctcaagcccaacggcaagatgatc 310
|| || ||| || || |||| |||| |||| |||||||||||||||||||||||||||||
Sbjct: 528 tccgccaacatccccctggcgccgttcatgagcctgctcaagcccaacggcaagatgatc 469
Query: 311 atggtcggcctgcccaccaagcctctcgagatcccgccctttgatctcatcattgggaac 370
||||||||||||||||||||| |||||||||||||||| |||||||||||||| ||||||
Sbjct: 468 atggtcggcctgcccaccaaggctctcgagatcccgccgtttgatctcatcatggggaac 409
Query: 371 aagaccctggccgggagctgcatcggcggcatgagggacacgcaggagatgatcaacgtg 430
||||||||||| ||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct: 408 aagaccctggcggggagctgcatcggcggcatgagggacacgcaggagatgctcgacgtg 349
Query: 431 gcggccaagcacggcgtgacggcggacatagaactggtggccgcggactacgtgaacacg 490
|||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||||
Sbjct: 348 gcggccaagcacggcgtgacggcggacatagagctggtggacgccgactacgtgaacacg 289
Query: 491 gccatggagcgcctggccaaggctgacgtcaggtaccgcttcgtcatcgacatcggcaac 550
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 gccatggagcgcctcgccaaggctgacgtcaggtaccgcttcgtcatcgacatcggcaac 229
Query: 551 accctcaagaattcaga 567
|||||||||||| ||||
Sbjct: 228 accctcaagaatgcaga 212
>gb|CF480170.1|CF480170 POL1_64_D07.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_64_D07_A002 3', mRNA sequence
Length = 570
Score = 636 bits (321), Expect = e-180
Identities = 408/437 (93%)
Strand = Plus / Plus
Query: 131 tcgcctgggaagaagcaggaggcgctcgaccggcttggcgccgacgccttcgtcgtcagc 190
||||| ||||||||||||||||| | |||||||| |||||||||||||||||||||||
Sbjct: 1 tcgccggggaagaagcaggaggccatggaccggctcggcgccgacgccttcgtcgtcagt 60
Query: 191 aaggacgccgaagaaatgaaggcggctgcgagcaccatggacggcatcatcaacacggtg 250
||||||||||| || ||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct: 61 aaggacgccgaggagatgaaggcggcggcgagcaccatggatggcatcatcaacacggtg 120
Query: 251 tcggcgaacctcaccttggccccgtacatgggcctgctcaagcccaacggcaagatgatc 310
|| || ||| || || |||| |||| |||| |||||||||||||||||||||||||||||
Sbjct: 121 tccgccaacatccccctggcgccgttcatgagcctgctcaagcccaacggcaagatgatc 180
Query: 311 atggtcggcctgcccaccaagcctctcgagatcccgccctttgatctcatcattgggaac 370
||||||||||||||||||||| |||||||||||||||| |||||||||||||| ||||||
Sbjct: 181 atggtcggcctgcccaccaaggctctcgagatcccgccgtttgatctcatcatggggaac 240
Query: 371 aagaccctggccgggagctgcatcggcggcatgagggacacgcaggagatgatcaacgtg 430
||||||||||| ||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct: 241 aagaccctggcggggagctgcatcggcggcatgagggacacgcaggagatgctcgacgtg 300
Query: 431 gcggccaagcacggcgtgacggcggacatagaactggtggccgcggactacgtgaacacg 490
|||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||||
Sbjct: 301 gcggccaagcacggcgtgacggcggacatagagctggtggacgccgactacgtgaacacg 360
Query: 491 gccatggagcgcctggccaaggctgacgtcaggtaccgcttcgtcatcgacatcggcaac 550
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gccatggagcgcctcgccaaggctgacgtcaggtaccgcttcgtcatcgacatcggcaac 420
Query: 551 accctcaagaattcaga 567
|||||||||||| ||||
Sbjct: 421 accctcaagaatgcaga 437
>gb|CF484412.1|CF484412 POL1_25_D12.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_25_D12_A002 3', mRNA sequence
Length = 568
Score = 595 bits (300), Expect = e-168
Identities = 375/400 (93%)
Strand = Plus / Plus
Query: 168 gcgccgacgccttcgtcgtcagcaaggacgccgaagaaatgaaggcggctgcgagcacca 227
||||||||||| |||||||||| ||||||||||| || ||||||||||| ||||||||||
Sbjct: 1 gcgccgacgccctcgtcgtcagtaaggacgccgaggagatgaaggcggcggcgagcacca 60
Query: 228 tggacggcatcatcaacacggtgtcggcgaacctcaccttggccccgtacatgggcctgc 287
|||| |||||||||||||||||||| || ||| || || |||| |||| |||| ||||||
Sbjct: 61 tggatggcatcatcaacacggtgtccgccaacatccccctggcgccgttcatgagcctgc 120
Query: 288 tcaagcccaacggcaagatgatcatggtcggcctgcccaccaagcctctcgagatcccgc 347
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 121 tcaagcccaacggcaagatgatcatggtcggcctgcccaccaaggctctcgagatcccgc 180
Query: 348 cctttgatctcatcattgggaacaagaccctggccgggagctgcatcggcggcatgaggg 407
| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 181 cgtttgatctcatcatggggaacaagaccctggcggggagctgcatcggcggcatgaggg 240
Query: 408 acacgcaggagatgatcaacgtggcggccaagcacggcgtgacggcggacatagaactgg 467
|||||||||||||| || ||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 241 acacgcaggagatgctcgacgtggcggccaagcacggcgtgacggcggacatagagctgg 300
Query: 468 tggccgcggactacgtgaacacggccatggagcgcctggccaaggctgacgtcaggtacc 527
||| ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 301 tggacgccgactacgtgaacacggccatggagcgcctcgccaaggctgacgtcaggtacc 360
Query: 528 gcttcgtcatcgacatcggcaacaccctcaagaattcaga 567
||||||||||||||||||||||||||||||||||| ||||
Sbjct: 361 gcttcgtcatcgacatcggcaacaccctcaagaatgcaga 400
>gb|CF487816.1|CF487816 POL1_46_C06.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_46_C06_A002 3', mRNA sequence
Length = 549
Score = 567 bits (286), Expect = e-160
Identities = 358/382 (93%)
Strand = Plus / Plus
Query: 186 tcagcaaggacgccgaagaaatgaaggcggctgcgagcaccatggacggcatcatcaaca 245
|||| ||||||||||| || ||||||||||| |||||||||||||| |||||||||||||
Sbjct: 1 tcagtaaggacgccgaggagatgaaggcggcggcgagcaccatggatggcatcatcaaca 60
Query: 246 cggtgtcggcgaacctcaccttggccccgtacatgggcctgctcaagcccaacggcaaga 305
||||||| || ||| || || |||| |||| |||| ||||||||||||||||||||||||
Sbjct: 61 cggtgtccgccaacatccccctggcgccgttcatgagcctgctcaagcccaacggcaaga 120
Query: 306 tgatcatggtcggcctgcccaccaagcctctcgagatcccgccctttgatctcatcattg 365
|||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| |
Sbjct: 121 tgatcatggtcggcctgcccaccaaggctctcgagatcccgccgtttgatctcatcatgg 180
Query: 366 ggaacaagaccctggccgggagctgcatcggcggcatgagggacacgcaggagatgatca 425
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 181 ggaacaagaccctggcggggagctgcatcggcggcatgagggacacgcaggagatgctcg 240
Query: 426 acgtggcggccaagcacggcgtgacggcggacatagaactggtggccgcggactacgtga 485
||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||
Sbjct: 241 acgtggcggccaagcacggcgtgacggcggacatagagctggtggacgccgactacgtga 300
Query: 486 acacggccatggagcgcctggccaaggctgacgtcaggtaccgcttcgtcatcgacatcg 545
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 acacggccatggagcgcctcgccaaggctgacgtcaggtaccgcttcgtcatcgacatcg 360
Query: 546 gcaacaccctcaagaattcaga 567
||||||||||||||||| ||||
Sbjct: 361 gcaacaccctcaagaatgcaga 382
>gb|CN148236.1|CN148236 WOUND1_55_B09.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_55_B09_A002 3', mRNA sequence
Length = 549
Score = 563 bits (284), Expect = e-158
Identities = 362/388 (93%)
Strand = Plus / Plus
Query: 180 tcgtcgtcagcaaggacgccgaagaaatgaaggcggctgcgagcaccatggacggcatca 239
|||||||||| ||||||||||| || ||||||||||| |||| ||||||||| |||||||
Sbjct: 1 tcgtcgtcagtaaggacgccgaggagatgaaggcggcggcgaccaccatggatggcatca 60
Query: 240 tcaacacggtgtcggcgaacctcaccttggccccgtacatgggcctgctcaagcccaacg 299
||||||||||||| || ||| || || |||| |||| |||| ||||||||||||||||||
Sbjct: 61 tcaacacggtgtccgccaacatccccctggcgccgttcatgagcctgctcaagcccaacg 120
Query: 300 gcaagatgatcatggtcggcctgcccaccaagcctctcgagatcccgccctttgatctca 359
|||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct: 121 gcaagatgatcatggtcggcctgcccaccaaggctctcgagatcccgccgtttgatctca 180
Query: 360 tcattgggaacaagaccctggccgggagctgcatcggcggcatgagggacacgcaggaga 419
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 181 tcatggggaacaagaccctggcggggagctgcatcggcggcatgagggacacgcaggaga 240
Query: 420 tgatcaacgtggcggccaagcacggcgtgacggcggacatagaactggtggccgcggact 479
|| || ||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||
Sbjct: 241 tgctcgacgtggcggccaagcacggcgtgacggcggacatagagctggtggacgccgact 300
Query: 480 acgtgaacacggccatggagcgcctggccaaggctgacgtcaggtaccgcttcgtcatcg 539
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct: 301 acgtgaacacggccatggagcgcctcgccaaggctgacgtcaggtaccgtttcgtcatcg 360
Query: 540 acatcggcaacaccctcaagaattcaga 567
||||||||||||||||||||||| ||||
Sbjct: 361 acatcggcaacaccctcaagaatgcaga 388
>gb|CF757955.1|CF757955 DSAF1_25_E02.g1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_25_E02_A011 3', mRNA sequence
Length = 528
Score = 553 bits (279), Expect = e-155
Identities = 357/383 (93%)
Strand = Plus / Plus
Query: 185 gtcagcaaggacgccgaagaaatgaaggcggctgcgagcaccatggacggcatcatcaac 244
||||| ||||||||||| || ||||||||||| |||||||||||||| ||||||||||||
Sbjct: 1 gtcagtaaggacgccgaggagatgaaggcggcggcgagcaccatggatggcatcatcaac 60
Query: 245 acggtgtcggcgaacctcaccttggccccgtacatgggcctgctcaagcccaacggcaag 304
|||||||| || ||| || || |||| |||| |||| |||| ||||||||||||||||||
Sbjct: 61 acggtgtccgccaacatccccctggcgccgttcatgagcctactcaagcccaacggcaag 120
Query: 305 atgatcatggtcggcctgcccaccaagcctctcgagatcccgccctttgatctcatcatt 364
||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct: 121 atgatcatggtcggcctgcccaccaaggctctcgagatcccgccgtttgatctcatcatg 180
Query: 365 gggaacaagaccctggccgggagctgcatcggcggcatgagggacacgcaggagatgatc 424
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 181 gggaacaagaccctggcggggagctgcatcggcggcatgagggacacgcaggagatgctc 240
Query: 425 aacgtggcggccaagcacggcgtgacggcggacatagaactggtggccgcggactacgtg 484
|| |||||||||||||||||||||||||||||||||| ||||||| ||| |||||||||
Sbjct: 241 gacttggcggccaagcacggcgtgacggcggacatagagctggtggacgccgactacgtg 300
Query: 485 aacacggccatggagcgcctggccaaggctgacgtcaggtaccgcttcgtcatcgacatc 544
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 301 aacacggccatggagcgcctcgccaaggctgacgtcaggtaccgcttcgtcatcgacatc 360
Query: 545 ggcaacaccctcaagaattcaga 567
|||||||||||||||||| ||||
Sbjct: 361 ggcaacaccctcaagaatgcaga 383
>gb|CN140813.1|CN140813 OX1_47_F12.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_47_F12_A002 3', mRNA sequence
Length = 669
Score = 504 bits (254), Expect = e-140
Identities = 335/362 (92%)
Strand = Plus / Plus
Query: 206 atgaaggcggctgcgagcaccatggacggcatcatcaacacggtgtcggcgaacctcacc 265
||||||||||| |||||||||||||| ||||||||||||| |||||| || ||| || ||
Sbjct: 7 atgaaggcggcggcgagcaccatggatggcatcatcaacatggtgtccgccaacatcccc 66
Query: 266 ttggccccgtacatgggcctgctcaagcccaacggcaagatgatcatggtcggcctgccc 325
|||| |||| |||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 67 ctggcgccgttcatgagcctgctcaagcccaagggcaagatgatcatggtcggcctgccc 126
Query: 326 accaagcctctcgagatcccgccctttgatctcatcattgggaacaagaccctggccggg 385
|||||| |||||||||||||||| |||||||||||||| ||||||||||||||||| |||
Sbjct: 127 accaaggctctcgagatcccgccgtttgatctcatcatggggaacaagaccctggcgggg 186
Query: 386 agctgcatcggcggcatgagggacacgcaggagatgatcaacgtggcggccaagcacggc 445
|||||||| |||||||||||| |||||||||||||| || ||||||||||||||||||||
Sbjct: 187 agctgcattggcggcatgaggaacacgcaggagatgctcgacgtggcggccaagcacggc 246
Query: 446 gtgacggcggacatagaactggtggccgcggactacgtgaacacggccatggagcgcctg 505
||||||||||||||||| |||||| ||| |||||||||||||||||||||||||||||
Sbjct: 247 gtgacggcggacatagagttggtggacgccgactacgtgaacacggccatggagcgcctc 306
Query: 506 gccaaggctgacgtcaggtaccgcttcgtcatcgacatcggcaacaccctcaagaattca 565
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct: 307 gccaaggctgacgtcaggtaccgcttcgtcattgacatcggcaacaccctcaagaatgca 366
Query: 566 ga 567
||
Sbjct: 367 ga 368
>gb|BG048260.1|BG048260 OV1_16_A02.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 471
Score = 478 bits (241), Expect = e-133
Identities = 286/301 (95%)
Strand = Plus / Plus
Query: 267 tggccccgtacatgggcctgctcaagcccaacggcaagatgatcatggtcggcctgccca 326
|||| |||| |||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 16 tggcgccgttcatgagcctgttcaagcccaacggcaagatgatcatggtcggcctgccca 75
Query: 327 ccaagcctctcgagatcccgccctttgatctcatcattgggaacaagaccctggccggga 386
||||| |||||||||||||||| |||||||||||||| ||||||||||||||||| ||||
Sbjct: 76 ccaaggctctcgagatcccgccgtttgatctcatcatggggaacaagaccctggcgggga 135
Query: 387 gctgcatcggcggcatgagggacacgcaggagatgatcaacgtggcggccaagcacggcg 446
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct: 136 gctgcatcggcggcatgagggacacgcaggagatgctcgacgtggcggccaagcacggcg 195
Query: 447 tgacggcggacatagaactggtggccgcggactacgtgaacacggccatggagcgcctgg 506
|||||||||||||||| ||||||| ||| ||||||||||||||||||||||||||||| |
Sbjct: 196 tgacggcggacatagagctggtggacgccgactacgtgaacacggccatggagcgcctcg 255
Query: 507 ccaaggctgacgtcaggtaccgcttcgtcatcgacatcggcaacaccctcaagaattcag 566
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 256 ccaaggctgacgtcaggtaccgcttcgtcatcgacatcggcaacaccctcaagaatgcag 315
Query: 567 a 567
|
Sbjct: 316 a 316
>gb|CW222417.1|CW222417 104_657_11202363_116_37176_002 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11202363, DNA
sequence
Length = 435
Score = 387 bits (195), Expect = e-105
Identities = 344/389 (88%), Gaps = 6/389 (1%)
Strand = Plus / Minus
Query: 78 tcgccgtcaagttcgccaag---gcgttcggggccaaggtcacggtcatcagcacgtcgc 134
||||||||||| |||||||| ||||||||| |||||||| ||||||||||||||||
Sbjct: 435 tcgccgtcaagctcgccaagacggcgttcgggatgaaggtcaccgtcatcagcacgtcgc 376
Query: 135 ctgggaagaagcaggaggcgctcgaccggcttggcgccgacgccttcgtcgtcagcaagg 194
| |||||||||||||| | | |||||||||||||||||||| || |||||||| ||||
Sbjct: 375 cgtggaagaagcaggagtccatggaccggcttggcgccgacgcattagtcgtcagtaagg 316
Query: 195 acgccgaagaaatgaaggcggctgcgagcaccatggacggcatcatcaacacggtgtcgg 254
||||||| || ||||||||||| ||||||||||||| |||||||||||||||||||| |
Sbjct: 315 acgccgaggagatgaaggcggcgtcgagcaccatggatggcatcatcaacacggtgtccg 256
Query: 255 cgaacctcaccttggccccgtacatgggcctgctcaagcccaacggcaagatgatcatgg 314
| ||| || || |||| | || |||| |||||||||||||||||||||||||||||||||
Sbjct: 255 ccaacatccccctggcgcagttcatgagcctgctcaagcccaacggcaagatgatcatgg 196
Query: 315 tcggcctgcccaccaagcctctcgagatcccgccctttgatctcatcattgggaacaaga 374
||||||||||||||||| |||| ||||||||||| |||||||||||||| ||||||||||
Sbjct: 195 tcggcctgcccaccaaggctcttgagatcccgccgtttgatctcatcatggggaacaaga 136
Query: 375 ccctggccgggagctgcatcggcggcatgagggacac-gcagga-gatgatcaacgtggc 432
||||||| |||| ||||||||||||||||| |||||| ||||| |||| | |||||||
Sbjct: 135 ccctggcggggaactgcatcggcggcatgaaggacacatcaggatgatgctagacgtggc 76
Query: 433 ggccaagca-cggcgtgacggcggacata 460
||||||||| |||||||||||||||||||
Sbjct: 75 ggccaagcatcggcgtgacggcggacata 47
>gb|CW310290.1|CW310290 104_799_11469637_148_35749_057 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11469637, DNA
sequence
Length = 671
Score = 355 bits (179), Expect = 6e-096
Identities = 277/309 (89%), Gaps = 3/309 (0%)
Strand = Plus / Minus
Query: 1 cagccccatgaagtaccacggcctgaacgtgccggggaagcacgtcggcgtgatggggct 60
|||||||||||||||||||||||||||| ||| |||||||||||||||||| |||||||
Sbjct: 309 cagccccatgaagtaccacggcctgaacaagcccgggaagcacgtcggcgtgctggggct 250
Query: 61 gggaggcctgggccacgtcgccgtcaagttcgccaaggcg---ttcggggccaaggtcac 117
||| ||||| |||||||||||||||||| ||||||||||| |||||| ||||||||
Sbjct: 249 gggcggccttggccacgtcgccgtcaagctcgccaaggcggcgttcgggatgaaggtcac 190
Query: 118 ggtcatcagcacgtcgcctgggaagaagcaggaggcgctcgaccggcttggcgccgacgc 177
||||||||||||||||| ||||||||||||||||| | |||||||| |||||||||||
Sbjct: 189 cgtcatcagcacgtcgccggggaagaagcaggaggccatggaccggctcggcgccgacgc 130
Query: 178 cttcgtcgtcagcaaggacgccgaagaaatgaaggcggctgcgagcaccatggacggcat 237
|||||||||||| ||||||||||| || ||||||||||| |||||||||||||| |||||
Sbjct: 129 cttcgtcgtcagtaaggacgccgaggagatgaaggcggcggcgagcaccatggatggcat 70
Query: 238 catcaacacggtgtcggcgaacctcaccttggccccgtacatgggcctgctcaagcccaa 297
||||||||||||||| || ||| || || |||| |||| |||| ||||||||||||||||
Sbjct: 69 catcaacacggtgtccgccaacatccccctggcgccgttcatgagcctgctcaagcccaa 10
Query: 298 cggcaagat 306
|||||||||
Sbjct: 9 cggcaagat 1
>gb|CN151965.1|CN151965 WOUND1_78_G12.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_78_G12_A002 5', mRNA sequence
Length = 616
Score = 297 bits (150), Expect = 1e-078
Identities = 240/268 (89%), Gaps = 4/268 (1%)
Strand = Plus / Plus
Query: 65 ggcctgggccacgtcgccgtcaagttcgccaaggcg---ttcggggccaaggtcacggtc 121
||||| |||||||||||||||||| ||||||||||| |||||| |||||||| |||
Sbjct: 349 ggccttggccacgtcgccgtcaagctcgccaaggcggcgttcgggatgaaggtcaccgtc 408
Query: 122 atcagcacgtcgcctgggaagaagcaggaggcgctcgaccggcttggcgccgacgccttc 181
|||||||||||||| ||||||||||||||||| | |||||||| |||||||||||||||
Sbjct: 409 atcagcacgtcgccggggaagaagcaggaggccatggaccggctcggcgccgacgccttc 468
Query: 182 gtcgtcagcaaggacgccgaagaaatgaaggcggctgcgagcaccatggacggcatcatc 241
|||||||| ||||||||||| || ||||||||||| |||||||||||||| |||||||||
Sbjct: 469 gtcgtcagtaaggacgccgaggagatgaaggcggcggcgagcaccatggatggcatcatc 528
Query: 242 -aacacggtgtcggcgaacctcaccttggccccgtacatgggcctgctcaagcccaacgg 300
||||||||||| || ||| || || |||| |||| |||| |||||||||||||||||||
Sbjct: 529 aaacacggtgtccgccaacatccccctggcgccgttcatgagcctgctcaagcccaacgg 588
Query: 301 caagatgatcatggtcggcctgcccacc 328
||||||||||||||||||||||||||||
Sbjct: 589 caagatgatcatggtcggcctgcccacc 616
>gb|BE593454.1|BE593454 WS1_98_A11.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 224
Score = 281 bits (142), Expect = 7e-074
Identities = 196/214 (91%)
Strand = Plus / Plus
Query: 118 ggtcatcagcacgtcgcctgggaagaagcaggaggcgctcgaccggcttggcgccgacgc 177
|||||||||||||||||| ||||||||||||||||| | |||||||| |||||||||||
Sbjct: 8 ggtcatcagcacgtcgccggggaagaagcaggaggccatggaccggctcggcgccgacgc 67
Query: 178 cttcgtcgtcagcaaggacgccgaagaaatgaaggcggctgcgagcaccatggacggcat 237
|||||||||||| ||||||||||| || ||||||||||| |||||||||||||| |||||
Sbjct: 68 cttcgtcgtcagtaaggacgccgaggagatgaaggcggcggcgagcaccatggatggcat 127
Query: 238 catcaacacggtgtcggcgaacctcaccttggccccgtacatgggcctgctcaagcccaa 297
||||||||||||||| || ||| || || |||| |||| |||| ||||||||||||||||
Sbjct: 128 catcaacacggtgtccgccaacatccccctggcgccgttcatgagcctgctcaagcccaa 187
Query: 298 cggcaagatgatcatggtcggcctgcccaccaag 331
||||||||||||||||||||||||||||||||||
Sbjct: 188 cggcaagatgatcatggtcggcctgcccaccaag 221
>gb|CW310289.1|CW310289 104_799_11469637_116_35745_057 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11469637, DNA
sequence
Length = 678
Score = 228 bits (115), Expect = 9e-058
Identities = 177/197 (89%), Gaps = 3/197 (1%)
Strand = Plus / Plus
Query: 1 cagccccatgaagtaccacggcctgaacgtgccggggaagcacgtcggcgtgatggggct 60
|||||||||||||||||||||||||||| ||| |||||||||||||||||| |||||||
Sbjct: 482 cagccccatgaagtaccacggcctgaacaagcccgggaagcacgtcggcgtgctggggct 541
Query: 61 gggaggcctgggccacgtcgccgtcaagttcgccaa---ggcgttcggggccaaggtcac 117
||| ||||| |||||||||||||||||| ||||||| |||||||||| ||||||||
Sbjct: 542 gggcggccttggccacgtcgccgtcaagctcgccaaggcggcgttcgggatgaaggtcac 601
Query: 118 ggtcatcagcacgtcgcctgggaagaagcaggaggcgctcgaccggcttggcgccgacgc 177
||||||||||||||||| ||||||||||||||||| | |||||||| |||||||||||
Sbjct: 602 cgtcatcagcacgtcgccggggaagaagcaggaggccatggaccggctcggcgccgacgc 661
Query: 178 cttcgtcgtcagcaagg 194
|||||||||||| ||||
Sbjct: 662 cttcgtcgtcagtaagg 678
>gb|BM317823.1|BM317823 OV1_16_A02.b9_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 534
Score = 143 bits (72), Expect = 4e-032
Identities = 93/100 (93%)
Strand = Plus / Plus
Query: 1 cagccccatgaagtaccacggcctgaacgtgccggggaagcacgtcggcgtgatggggct 60
|||||||||||||||||||||||||||| ||| |||||||||||||||||| |||||||
Sbjct: 416 cagccccatgaagtaccacggcctgaacaagcccgggaagcacgtcggcgtgctggggct 475
Query: 61 gggaggcctgggccacgtcgccgtcaagttcgccaaggcg 100
||| ||||| |||||||||||||||||| |||||||||||
Sbjct: 476 gggcggccttggccacgtcgccgtcaagctcgccaaggcg 515
>gb|CN147591.1|CN147591 WOUND1_50_E09.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_50_E09_A002 5', mRNA sequence
Length = 785
Score = 127 bits (64), Expect = 2e-027
Identities = 82/88 (93%)
Strand = Plus / Plus
Query: 1 cagccccatgaagtaccacggcctgaacgtgccggggaagcacgtcggcgtgatggggct 60
|||||||||||||||||||||||||||| ||| |||||||||||||||||| |||||||
Sbjct: 697 cagccccatgaagtaccacggcctgaacaagcccgggaagcacgtcggcgtgctggggct 756
Query: 61 gggaggcctgggccacgtcgccgtcaag 88
||| ||||| ||||||||||||||||||
Sbjct: 757 gggcggccttggccacgtcgccgtcaag 784
>gb|BG052876.1|BG052876 RHIZ2_15_C10.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 113
Score = 121 bits (61), Expect = 1e-025
Identities = 73/77 (94%)
Strand = Plus / Plus
Query: 491 gccatggagcgcctggccaaggctgacgtcaggtaccgcttcgtcatcgacatcggcaac 550
|||||||||||||| ||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct: 1 gccatggagcgcctcgccaaggttgacgtcaggtaccgcttcgtcatagacatcggcaac 60
Query: 551 accctcaagaattcaga 567
|||||||||||| ||||
Sbjct: 61 accctcaagaatgcaga 77
>gb|CW021131.1|CW021131 104_109_10409366_114_30490 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10409366, DNA
sequence
Length = 657
Score = 105 bits (53), Expect = 9e-021
Identities = 122/145 (84%)
Strand = Plus / Minus
Query: 47 ggcgtgatggggctgggaggcctgggccacgtcgccgtcaagttcgccaaggcgttcggg 106
|||||| | |||||||| || || ||||| |||||||||||||||||||||||||||||
Sbjct: 414 ggcgtggtagggctgggtggactcggccatgtcgccgtcaagttcgccaaggcgttcggt 355
Query: 107 gccaaggtcacggtcatcagcacgtcgcctgggaagaagcaggaggcgctcgaccggctt 166
| ||||| ||| ||||||||||||| | |||| || |||||||| || ||||||
Sbjct: 354 ctccgcgtcaccgtcgtcagcacgtcgccggcgaaggagaaggaggcgagggagcggctt 295
Query: 167 ggcgccgacgccttcgtcgtcagca 191
|||||||||| ||||||||||||||
Sbjct: 294 ggcgccgacgacttcgtcgtcagca 270
>gb|CW217046.1|CW217046 104_650_11195446_148_37131_093 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11195446, DNA
sequence
Length = 678
Score = 95.6 bits (48), Expect = 9e-018
Identities = 63/68 (92%)
Strand = Plus / Minus
Query: 490 ggccatggagcgcctggccaaggctgacgtcaggtaccgcttcgtcatcgacatcggcaa 549
||||||||||||||| ||||||| || |||||||||||||||||||||||| |||||||
Sbjct: 318 ggccatggagcgcctcgccaagggcgaggtcaggtaccgcttcgtcatcgacgtcggcaa 259
Query: 550 caccctca 557
||||||||
Sbjct: 258 caccctca 251
Score = 60.0 bits (30), Expect = 5e-007
Identities = 48/54 (88%)
Strand = Plus / Minus
Query: 370 caagaccctggccgggagctgcatcggcggcatgagggacacgcaggagatgat 423
|||||| |||||||||||||| || || |||| ||||||||||||||||||||
Sbjct: 438 caagactctggccgggagctgtatggggagcatcagggacacgcaggagatgat 385
>gb|CW243962.1|CW243962 104_704_11220332_148_37583_070 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11220332, DNA
sequence
Length = 603
Score = 95.6 bits (48), Expect = 9e-018
Identities = 63/68 (92%)
Strand = Plus / Minus
Query: 490 ggccatggagcgcctggccaaggctgacgtcaggtaccgcttcgtcatcgacatcggcaa 549
||||||||||||||| ||||||| || |||||||||||||||||||||||| |||||||
Sbjct: 358 ggccatggagcgcctcgccaagggcgaggtcaggtaccgcttcgtcatcgacgtcggcaa 299
Query: 550 caccctca 557
||||||||
Sbjct: 298 caccctca 291
Score = 60.0 bits (30), Expect = 5e-007
Identities = 48/54 (88%)
Strand = Plus / Minus
Query: 370 caagaccctggccgggagctgcatcggcggcatgagggacacgcaggagatgat 423
|||||| |||||||||||||| || || |||| ||||||||||||||||||||
Sbjct: 478 caagactctggccgggagctgtatggggagcatcagggacacgcaggagatgat 425
>gb|CW404465.1|CW404465 fsbb001f096j22f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f096j22, DNA
sequence
Length = 728
Score = 95.6 bits (48), Expect = 9e-018
Identities = 63/68 (92%)
Strand = Plus / Plus
Query: 490 ggccatggagcgcctggccaaggctgacgtcaggtaccgcttcgtcatcgacatcggcaa 549
||||||||||||||| ||||||| || |||||||||||||||||||||||| |||||||
Sbjct: 400 ggccatggagcgcctcgccaagggcgaggtcaggtaccgcttcgtcatcgacgtcggcaa 459
Query: 550 caccctca 557
||||||||
Sbjct: 460 caccctca 467
Score = 60.0 bits (30), Expect = 5e-007
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 370 caagaccctggccgggagctgcatcggcggcatgagggacacgcaggagatgat 423
|||||| |||||||||||||| || || |||| ||||||||||||||||||||
Sbjct: 280 caagactctggccgggagctgtatggggagcatcagggacacgcaggagatgat 333
>gb|CW404466.1|CW404466 fsbb001f096j22k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f096j22, DNA
sequence
Length = 708
Score = 95.6 bits (48), Expect = 9e-018
Identities = 63/68 (92%)
Strand = Plus / Minus
Query: 490 ggccatggagcgcctggccaaggctgacgtcaggtaccgcttcgtcatcgacatcggcaa 549
||||||||||||||| ||||||| || |||||||||||||||||||||||| |||||||
Sbjct: 574 ggccatggagcgcctcgccaagggcgaggtcaggtaccgcttcgtcatcgacgtcggcaa 515
Query: 550 caccctca 557
||||||||
Sbjct: 514 caccctca 507
Score = 60.0 bits (30), Expect = 5e-007
Identities = 48/54 (88%)
Strand = Plus / Minus
Query: 370 caagaccctggccgggagctgcatcggcggcatgagggacacgcaggagatgat 423
|||||| |||||||||||||| || || |||| ||||||||||||||||||||
Sbjct: 694 caagactctggccgggagctgtatggggagcatcagggacacgcaggagatgat 641
>gb|CD203869.1|CD203869 HS1_2_H07.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA clone
HS1_2_H07_A012 3', mRNA sequence
Length = 627
Score = 95.6 bits (48), Expect = 9e-018
Identities = 63/68 (92%)
Strand = Plus / Plus
Query: 490 ggccatggagcgcctggccaaggctgacgtcaggtaccgcttcgtcatcgacatcggcaa 549
||||||||||||||| ||||||| || |||||||||||||||||||||||| |||||||
Sbjct: 412 ggccatggagcgcctcgccaagggcgaggtcaggtaccgcttcgtcatcgacgtcggcaa 471
Query: 550 caccctca 557
||||||||
Sbjct: 472 caccctca 479
Score = 60.0 bits (30), Expect = 5e-007
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 370 caagaccctggccgggagctgcatcggcggcatgagggacacgcaggagatgat 423
|||||| |||||||||||||| || || |||| ||||||||||||||||||||
Sbjct: 292 caagactctggccgggagctgtatggggagcatcagggacacgcaggagatgat 345
>gb|CD225116.1|CD225116 CCC1_38_B06.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_38_B06_A007 3', mRNA sequence
Length = 630
Score = 95.6 bits (48), Expect = 9e-018
Identities = 63/68 (92%)
Strand = Plus / Plus
Query: 490 ggccatggagcgcctggccaaggctgacgtcaggtaccgcttcgtcatcgacatcggcaa 549
||||||||||||||| ||||||| || |||||||||||||||||||||||| |||||||
Sbjct: 423 ggccatggagcgcctcgccaagggcgaggtcaggtaccgcttcgtcatcgacgtcggcaa 482
Query: 550 caccctca 557
||||||||
Sbjct: 483 caccctca 490
Score = 60.0 bits (30), Expect = 5e-007
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 370 caagaccctggccgggagctgcatcggcggcatgagggacacgcaggagatgat 423
|||||| |||||||||||||| || || |||| ||||||||||||||||||||
Sbjct: 303 caagactctggccgggagctgtatggggagcatcagggacacgcaggagatgat 356
>gb|CD227113.1|CD227113 CCC1_4_B10.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_4_B10_A007 3', mRNA sequence
Length = 647
Score = 95.6 bits (48), Expect = 9e-018
Identities = 63/68 (92%)
Strand = Plus / Plus
Query: 490 ggccatggagcgcctggccaaggctgacgtcaggtaccgcttcgtcatcgacatcggcaa 549
||||||||||||||| ||||||| || |||||||||||||||||||||||| |||||||
Sbjct: 433 ggccatggagcgcctcgccaagggcgaggtcaggtaccgcttcgtcatcgacgtcggcaa 492
Query: 550 caccctca 557
||||||||
Sbjct: 493 caccctca 500
Score = 60.0 bits (30), Expect = 5e-007
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 370 caagaccctggccgggagctgcatcggcggcatgagggacacgcaggagatgat 423
|||||| |||||||||||||| || || |||| ||||||||||||||||||||
Sbjct: 313 caagactctggccgggagctgtatggggagcatcagggacacgcaggagatgat 366
>gb|CN138045.1|CN138045 OX1_61_H04.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_61_H04_A002 3', mRNA sequence
Length = 698
Score = 95.6 bits (48), Expect = 9e-018
Identities = 153/188 (81%)
Strand = Plus / Plus
Query: 65 ggcctgggccacgtcgccgtcaagttcgccaaggcgttcggggccaaggtcacggtcatc 124
||||| |||||| | |||||||||||||||||||||||||| | |||||| ||||||
Sbjct: 5 ggcctaggccacatggccgtcaagttcgccaaggcgttcggcatgacggtcaccgtcatc 64
Query: 125 agcacgtcgcctgggaagaagcaggaggcgctcgaccggcttggcgccgacgccttcgtc 184
||| ||||||| || ||| | |||||||||| || |||||||||||||| ||| |
Sbjct: 65 agctcgtcgcccggcaagcgcgacgaggcgctcggacgccttggcgccgacgcgttcttg 124
Query: 185 gtcagcaaggacgccgaagaaatgaaggcggctgcgagcaccatggacggcatcatcaac 244
|||||| | ||||||| |||||||||| || ||| ||| |||||||||||||| ||
Sbjct: 125 gtcagccacgacgccgcgcaaatgaaggcagcagcggccacgttggacggcatcatcgac 184
Query: 245 acggtgtc 252
||||||||
Sbjct: 185 acggtgtc 192
>gb|CW222418.1|CW222418 104_657_11202363_148_37175_002 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11202363, DNA
sequence
Length = 294
Score = 93.7 bits (47), Expect = 3e-017
Identities = 59/63 (93%)
Strand = Plus / Plus
Query: 1 cagccccatgaagtaccacggcctgaacgtgccggggaagcacgtcggcgtgatggggct 60
|||||||||||||||||||||||||||| ||| |||||||||||||||||| |||||||
Sbjct: 228 cagccccatgaagtaccacggcctgaacaagcccgggaagcacgtcggcgtgctggggct 287
Query: 61 ggg 63
|||
Sbjct: 288 ggg 290
>gb|CN145955.1|CN145955 WOUND1_36_A11.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_36_A11_A002 5', mRNA sequence
Length = 760
Score = 93.7 bits (47), Expect = 3e-017
Identities = 59/63 (93%)
Strand = Plus / Plus
Query: 1 cagccccatgaagtaccacggcctgaacgtgccggggaagcacgtcggcgtgatggggct 60
|||||||||||||||||||||||||||| ||| |||||||||||||||||| |||||||
Sbjct: 697 cagccccatgaagtaccacggcctgaacaagcccgggaagcacgtcggcgtgctggggct 756
Query: 61 ggg 63
|||
Sbjct: 757 ggg 759
>gb|CX622493.1|CX622493 GABR1_64_G03.b2_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_64_G03_A002 3', mRNA sequence
Length = 746
Score = 89.7 bits (45), Expect = 5e-016
Identities = 69/77 (89%)
Strand = Plus / Plus
Query: 56 gggctgggaggcctgggccacgtcgccgtcaagttcgccaaggcgttcggggccaaggtc 115
||||| || ||||| |||||||||||||||||||||| ||||||||||||| ||||||
Sbjct: 13 gggctcggcggcctcggccacgtcgccgtcaagttcggcaaggcgttcgggatgaaggtc 72
Query: 116 acggtcatcagcacgtc 132
|| ||||||||||||||
Sbjct: 73 accgtcatcagcacgtc 89
Score = 61.9 bits (31), Expect = 1e-007
Identities = 46/51 (90%)
Strand = Plus / Plus
Query: 206 atgaaggcggctgcgagcaccatggacggcatcatcaacacggtgtcggcg 256
||||||||||| || |||||||||||||||||||| ||||||| ||||||
Sbjct: 163 atgaaggcggcgacgggcaccatggacggcatcatcgacacggtatcggcg 213
>gb|CN149616.1|CN149616 WOUND1_63_H02.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_63_H02_A002 5', mRNA sequence
Length = 764
Score = 87.7 bits (44), Expect = 2e-015
Identities = 62/68 (91%)
Strand = Plus / Plus
Query: 1 cagccccatgaagtaccacggcctgaacgtgccggggaagcacgtcggcgtgatggggct 60
|||||||||||||||||||||||||||| ||| |||||||||||| ||||| |||||||
Sbjct: 697 cagccccatgaagtaccacggcctgaacaagcccgggaagcacgtcagcgtgctggggct 756
Query: 61 gggaggcc 68
||| ||||
Sbjct: 757 gggcggcc 764
>gb|CD462540.1|CD462540 ETH1_38_C08.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_38_C08_A002 3', mRNA sequence
Length = 715
Score = 85.7 bits (43), Expect = 8e-015
Identities = 187/235 (79%)
Strand = Plus / Plus
Query: 18 acggcctgaacgtgccggggaagcacgtcggcgtgatggggctgggaggcctgggccacg 77
||||||| |||||||| ||||||| | ||||||| |||| || || ||||| ||||||
Sbjct: 28 acggcctcaacgtgcccgggaagcgcctcggcgtcgtgggactcggtggcctcggccaca 87
Query: 78 tcgccgtcaagttcgccaaggcgttcggggccaaggtcacggtcatcagcacgtcgcctg 137
||||||||||||||| ||||||||||||| ||||||||| |||||| |||| ||||
Sbjct: 88 tcgccgtcaagttcggcaaggcgttcgggatggcggtcacggtgatcagctcgtcccctg 147
Query: 138 ggaagaagcaggaggcgctcgaccggcttggcgccgacgccttcgtcgtcagcaaggacg 197
||| ||||| |||| || ||||||||||||| ||| | |||||| |||
Sbjct: 148 ccaagcgtggagaggccatcgagcgccttggcgccgacgagttcttggtcagccgcgaca 207
Query: 198 ccgaagaaatgaaggcggctgcgagcaccatggacggcatcatcaacacggtgtc 252
|||| | ||||||||||| || |||| ||||||||||||||| ||||||||||
Sbjct: 208 ccgagcagatgaaggcggcggcaggcacgatggacggcatcatcgacacggtgtc 262
Score = 50.1 bits (25), Expect = 5e-004
Identities = 52/61 (85%)
Strand = Plus / Plus
Query: 475 ggactacgtgaacacggccatggagcgcctggccaaggctgacgtcaggtaccgcttcgt 534
||||||||| ||||||||||||||||| |||| | | |||||||||||||| |||||
Sbjct: 485 ggactacgtcaacacggccatggagcggctggagaggaacgacgtcaggtaccggttcgt 544
Query: 535 c 535
|
Sbjct: 545 c 545
>gb|CW250954.1|CW250954 104_713_11223665_148_35058_073 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11223665, DNA
sequence
Length = 271
Score = 81.8 bits (41), Expect = 1e-013
Identities = 77/89 (86%)
Strand = Plus / Minus
Query: 18 acggcctgaacgtgccggggaagcacgtcggcgtgatggggctgggaggcctgggccacg 77
||||||| |||||||| ||||||| | ||||||| |||| || || ||||| ||||||
Sbjct: 131 acggcctcaacgtgcccgggaagcgcctcggcgtcgtgggactcggtggcctcggccaca 72
Query: 78 tcgccgtcaagttcgccaaggcgttcggg 106
||||||||||||||| |||||||||||||
Sbjct: 71 tcgccgtcaagttcggcaaggcgttcggg 43
>gb|CW409779.1|CW409779 fsbb001f104d18f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f104d18, DNA
sequence
Length = 703
Score = 81.8 bits (41), Expect = 1e-013
Identities = 77/89 (86%)
Strand = Plus / Minus
Query: 18 acggcctgaacgtgccggggaagcacgtcggcgtgatggggctgggaggcctgggccacg 77
||||||| |||||||| ||||||| | ||||||| |||| || || ||||| ||||||
Sbjct: 593 acggcctcaacgtgcccgggaagcgcctcggcgtcgtgggactcggtggcctcggccaca 534
Query: 78 tcgccgtcaagttcgccaaggcgttcggg 106
||||||||||||||| |||||||||||||
Sbjct: 533 tcgccgtcaagttcggcaaggcgttcggg 505
Score = 46.1 bits (23), Expect = 0.007
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 222 gcaccatggacggcatcatcaacacggtgtc 252
|||| ||||||||||||||| ||||||||||
Sbjct: 279 gcacgatggacggcatcatcgacacggtgtc 249
Score = 44.1 bits (22), Expect = 0.028
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 475 ggactacgtgaacacggccatggagc 500
||||||||| ||||||||||||||||
Sbjct: 26 ggactacgtcaacacggccatggagc 1
>gb|CW479152.1|CW479152 fsbb001f237h02f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f237h02, DNA
sequence
Length = 430
Score = 81.8 bits (41), Expect = 1e-013
Identities = 77/89 (86%)
Strand = Plus / Minus
Query: 18 acggcctgaacgtgccggggaagcacgtcggcgtgatggggctgggaggcctgggccacg 77
||||||| |||||||| ||||||| | ||||||| |||| || || ||||| ||||||
Sbjct: 292 acggcctcaacgtgcccgggaagcgcctcggcgtcgtgggactcggtggcctcggccaca 233
Query: 78 tcgccgtcaagttcgccaaggcgttcggg 106
||||||||||||||| |||||||||||||
Sbjct: 232 tcgccgtcaagttcggcaaggcgttcggg 204
>gb|CF430017.1|CF430017 PH1_25_A07.g1_A002 Phosphorous-deficient seedlings Sorghum bicolor
cDNA clone PH1_25_A07_A002 5', mRNA sequence
Length = 781
Score = 75.8 bits (38), Expect = 8e-012
Identities = 78/90 (86%), Gaps = 1/90 (1%)
Strand = Plus / Plus
Query: 18 acggcctgaacgtgccggggaagcacgtcggcgtgatgggg-ctgggaggcctgggccac 76
||||||| |||||||| ||||||| | ||||||| ||||| || || ||||| ||||||
Sbjct: 610 acggcctcaacgtgcccgggaagcgcctcggcgtcgtggggactcggtggcctcggccac 669
Query: 77 gtcgccgtcaagttcgccaaggcgttcggg 106
||||||||||||||| |||||||||||||
Sbjct: 670 atcgccgtcaagttcggcaaggcgttcggg 699
>gb|CW107624.1|CW107624 104_478_11096696_148_34482_032 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11096696, DNA
sequence
Length = 252
Score = 73.8 bits (37), Expect = 3e-011
Identities = 76/89 (85%)
Strand = Plus / Minus
Query: 18 acggcctgaacgtgccggggaagcacgtcggcgtgatggggctgggaggcctgggccacg 77
||||||| |||||||| ||||||| | ||||||| |||| || || ||||| ||||||
Sbjct: 242 acggcctcaacgtgcccgggaagcgcctcggcgtcgtgggactcggtggcctaggccaca 183
Query: 78 tcgccgtcaagttcgccaaggcgttcggg 106
| ||||||||||||| |||||||||||||
Sbjct: 182 ttgccgtcaagttcggcaaggcgttcggg 154
>gb|BZ422560.1|BZ422560 id55d04.b1 WGS-SbicolorF (DH5a methyl filtered) Sorghum bicolor
genomic clone id55d04 5', DNA sequence
Length = 439
Score = 71.9 bits (36), Expect = 1e-010
Identities = 111/136 (81%)
Strand = Plus / Minus
Query: 65 ggcctgggccacgtcgccgtcaagttcgccaaggcgttcggggccaaggtcacggtcatc 124
||||| |||||| | |||||||||||||||||||||||||| | |||||| ||||||
Sbjct: 249 ggcctaggccacatggccgtcaagttcgccaaggcgttcggcatgacggtcaccgtcatc 190
Query: 125 agcacgtcgcctgggaagaagcaggaggcgctcgaccggcttggcgccgacgccttcgtc 184
||| ||||||| || ||| | |||||||||| || |||||||||||||| ||| |
Sbjct: 189 agctcgtcgcccggcaagcgcgacgaggcgctcggacgccttggcgccgacgcgttcttg 130
Query: 185 gtcagcaaggacgccg 200
|||||| | |||||||
Sbjct: 129 gtcagccacgacgccg 114
>gb|CL196288.1|CL196288 104_422_10942954_114_32317_041 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10942954, DNA
sequence
Length = 461
Score = 71.9 bits (36), Expect = 1e-010
Identities = 111/136 (81%)
Strand = Plus / Minus
Query: 65 ggcctgggccacgtcgccgtcaagttcgccaaggcgttcggggccaaggtcacggtcatc 124
||||| |||||| | |||||||||||||||||||||||||| | |||||| ||||||
Sbjct: 335 ggcctaggccacatggccgtcaagttcgccaaggcgttcggcatgacggtcaccgtcatc 276
Query: 125 agcacgtcgcctgggaagaagcaggaggcgctcgaccggcttggcgccgacgccttcgtc 184
||| ||||||| || ||| | |||||||||| || |||||||||||||| ||| |
Sbjct: 275 agctcgtcgcccggcaagcgcgacgaggcgctcggacgccttggcgccgacgcgttcttg 216
Query: 185 gtcagcaaggacgccg 200
|||||| | |||||||
Sbjct: 215 gtcagccacgacgccg 200
>gb|CW027560.1|CW027560 104_254_10498588_114_30395 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10498588, DNA
sequence
Length = 827
Score = 71.9 bits (36), Expect = 1e-010
Identities = 111/136 (81%)
Strand = Plus / Plus
Query: 65 ggcctgggccacgtcgccgtcaagttcgccaaggcgttcggggccaaggtcacggtcatc 124
||||| |||||| | |||||||||||||||||||||||||| | |||||| ||||||
Sbjct: 397 ggcctaggccacatggccgtcaagttcgccaaggcgttcggcatgacggtcaccgtcatc 456
Query: 125 agcacgtcgcctgggaagaagcaggaggcgctcgaccggcttggcgccgacgccttcgtc 184
||| ||||||| || ||| | |||||||||| || |||||||||||||| ||| |
Sbjct: 457 agctcgtcgcccggcaagcgcgacgaggcgctcggacgccttggcgccgacgcgttcttg 516
Query: 185 gtcagcaaggacgccg 200
|||||| | |||||||
Sbjct: 517 gtcagccacgacgccg 532
Score = 42.1 bits (21), Expect = 0.11
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 228 tggacggcatcatcaacacggtgtc 252
|||||||||||||| ||||||||||
Sbjct: 719 tggacggcatcatcgacacggtgtc 743
>gb|CW479571.1|CW479571 fsbb001f238c15k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f238c15, DNA
sequence
Length = 482
Score = 71.9 bits (36), Expect = 1e-010
Identities = 111/136 (81%)
Strand = Plus / Minus
Query: 65 ggcctgggccacgtcgccgtcaagttcgccaaggcgttcggggccaaggtcacggtcatc 124
||||| |||||| | |||||||||||||||||||||||||| | |||||| ||||||
Sbjct: 333 ggcctaggccacatggccgtcaagttcgccaaggcgttcggcatgacggtcaccgtcatc 274
Query: 125 agcacgtcgcctgggaagaagcaggaggcgctcgaccggcttggcgccgacgccttcgtc 184
||| ||||||| || ||| | |||||||||| || |||||||||||||| ||| |
Sbjct: 273 agctcgtcgcccggcaagcgcgacgaggcgctcggacgccttggcgccgacgcgttcttg 214
Query: 185 gtcagcaaggacgccg 200
|||||| | |||||||
Sbjct: 213 gtcagccacgacgccg 198
>gb|CW406041.1|CW406041 fsbb001f098n24f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f098n24, DNA
sequence
Length = 547
Score = 69.9 bits (35), Expect = 5e-010
Identities = 47/51 (92%)
Strand = Plus / Plus
Query: 56 gggctgggaggcctgggccacgtcgccgtcaagttcgccaaggcgttcggg 106
||||| || ||||| |||||||||||||||||||||| |||||||||||||
Sbjct: 487 gggctcggcggcctcggccacgtcgccgtcaagttcggcaaggcgttcggg 537
>gb|BF587706.1|BF587706 FM1_39_F09.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 614
Score = 69.9 bits (35), Expect = 5e-010
Identities = 47/51 (92%)
Strand = Plus / Plus
Query: 206 atgaaggcggctgcgagcaccatggacggcatcatcaacacggtgtcggcg 256
||||||||||| || |||||||||||||||||||| ||||||||||||||
Sbjct: 86 atgaaggcggcgacgggcaccatggacggcatcatcgacacggtgtcggcg 136
Score = 54.0 bits (27), Expect = 3e-005
Identities = 57/67 (85%)
Strand = Plus / Plus
Query: 475 ggactacgtgaacacggccatggagcgcctggccaaggctgacgtcaggtaccgcttcgt 534
||||||||| |||||||| |||||||| || | ||| ||||||| | |||||||||||
Sbjct: 355 ggactacgtcaacacggcgatggagcggctcgagaagaatgacgtccgctaccgcttcgt 414
Query: 535 catcgac 541
|||||||
Sbjct: 415 catcgac 421
>gb|BG559907.1|BG559907 RHIZ2_75_B06.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 595
Score = 69.9 bits (35), Expect = 5e-010
Identities = 47/51 (92%)
Strand = Plus / Plus
Query: 206 atgaaggcggctgcgagcaccatggacggcatcatcaacacggtgtcggcg 256
||||||||||| || |||||||||||||||||||| ||||||||||||||
Sbjct: 17 atgaaggcggcgacgggcaccatggacggcatcatcgacacggtgtcggcg 67
Score = 46.1 bits (23), Expect = 0.007
Identities = 53/63 (84%)
Strand = Plus / Plus
Query: 475 ggactacgtgaacacggccatggagcgcctggccaaggctgacgtcaggtaccgcttcgt 534
||||||||| |||||||| |||||||| || | ||| ||||||| | |||||||||||
Sbjct: 286 ggactacgtcaacacggcgatggagcggctcgagaagaatgacgtccgctaccgcttcgt 345
Query: 535 cat 537
|||
Sbjct: 346 cat 348
>gb|BE598733.1|BE598733 PI1_81_A05.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 256
Score = 67.9 bits (34), Expect = 2e-009
Identities = 52/58 (89%)
Strand = Plus / Plus
Query: 47 ggcgtgatggggctgggaggcctgggccacgtcgccgtcaagttcgccaaggcgttcg 104
|||||| | |||||||| || || ||||| ||||||||||||||||||||||||||||
Sbjct: 199 ggcgtggtagggctgggtggactcggccatgtcgccgtcaagttcgccaaggcgttcg 256
>gb|CN138126.1|CN138126 OX1_61_H04.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_61_H04_A002 5', mRNA sequence
Length = 777
Score = 67.9 bits (34), Expect = 2e-009
Identities = 103/126 (81%)
Strand = Plus / Plus
Query: 65 ggcctgggccacgtcgccgtcaagttcgccaaggcgttcggggccaaggtcacggtcatc 124
||||| |||||| | |||||||||||||||||||||||||| | |||||| ||||||
Sbjct: 648 ggcctaggccacatggccgtcaagttcgccaaggcgttcggcatgacggtcaccgtcatc 707
Query: 125 agcacgtcgcctgggaagaagcaggaggcgctcgaccggcttggcgccgacgccttcgtc 184
||| ||||||| || ||| | |||||||||| || |||||||||||||| ||| |
Sbjct: 708 agctcgtcgcccggcaagcgcgacgaggcgctcggacgccttggcgccgacgcgttcttg 767
Query: 185 gtcagc 190
||||||
Sbjct: 768 gtcagc 773
>gb|BG159378.1|BG159378 OV2_7_A11.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA sequence
Length = 591
Score = 61.9 bits (31), Expect = 1e-007
Identities = 46/51 (90%)
Strand = Plus / Plus
Query: 206 atgaaggcggctgcgagcaccatggacggcatcatcaacacggtgtcggcg 256
||||||||||| || |||||||||||||||||||| ||||||| ||||||
Sbjct: 64 atgaaggcggcgacgggcaccatggacggcatcatcgacacggtatcggcg 114
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 366,714
Number of Sequences: 832831
Number of extensions: 366714
Number of successful extensions: 101694
Number of sequences better than 0.5: 112
Number of HSP's better than 0.5 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 101444
Number of HSP's gapped (non-prelim): 231
length of query: 1137
length of database: 491,359,669
effective HSP length: 20
effective length of query: 1117
effective length of database: 474,703,049
effective search space: 530243305733
effective search space used: 530243305733
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)