BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 4005867.2.1
(1967 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW321706.1|CW321706 104_815_11475696_148_35943_094 Sorgh... 396 e-108
gb|CF486088.1|CF486088 POL1_35_D06.g1_A002 Pollen Sorghum b... 180 3e-043
gb|CW467467.1|CW467467 fsbb001f219c19f0 Sorghum methylation... 178 1e-042
gb|CW155885.1|CW155885 104_558_11146378_148_36365_037 Sorgh... 163 8e-038
gb|CL150595.1|CL150595 104_332_10778646_114_31357_198 Sorgh... 149 1e-033
gb|CL182214.1|CL182214 104_393_10897273_116_31922_265 Sorgh... 149 1e-033
gb|CW192233.1|CW192233 104_614_11178915_116_36943_006 Sorgh... 149 1e-033
gb|CW281478.1|CW281478 104_757_11408201_116_35463_077 Sorgh... 149 1e-033
gb|CW443774.1|CW443774 fsbb001f164a20k0 Sorghum methylation... 149 1e-033
gb|CW036788.1|CW036788 104_268_10503969_114_30381 Sorghum m... 143 7e-032
gb|CW037307.1|CW037307 104_269_10504266_114_30383 Sorghum m... 143 7e-032
gb|CW057246.1|CW057246 104_299_10518117_115_30171 Sorghum m... 123 7e-026
gb|CF486010.1|CF486010 POL1_35_D06.b1_A002 Pollen Sorghum b... 123 7e-026
gb|CW107343.1|CW107343 104_477_11096531_148_34472_040 Sorgh... 121 3e-025
gb|CW468784.1|CW468784 fsbb001f221c20f0 Sorghum methylation... 117 4e-024
gb|BG356421.1|BG356421 EM1_22_D02.g1_A002 Embryo 1 (EM1) So... 117 4e-024
gb|CW349543.1|CW349543 fsbb001f010h01k0 Sorghum methylation... 100 1e-018
gb|BG048275.1|BG048275 OV1_16_B07.g1_A002 Ovary 1 (OV1) Sor... 94 6e-017
gb|BG049225.1|BG049225 OV1_17_B10.g1_A002 Ovary 1 (OV1) Sor... 94 6e-017
gb|CW172749.1|CW172749 104_584_11156458_148_36543_045 Sorgh... 92 2e-016
gb|CW216947.1|CW216947 104_650_11195395_116_37129_080 Sorgh... 92 2e-016
gb|CW339306.1|CW339306 104_840_11485203_148_36139_016 Sorgh... 92 2e-016
gb|CL176112.1|CL176112 104_382_10892904_116_31763_120 Sorgh... 90 9e-016
gb|CW117897.1|CW117897 104_494_11107909_148_34622_061 Sorgh... 86 1e-014
gb|CW172299.1|CW172299 104_583_11156215_148_36534_024 Sorgh... 84 6e-014
gb|CW192234.1|CW192234 104_614_11178915_148_36944_006 Sorgh... 82 2e-013
gb|AW746386.1|AW746386 WS1_49_G01.g1_A002 Water-stressed 1 ... 78 4e-012
gb|AW924063.1|AW924063 WS1_49_G01.b1_A002 Water-stressed 1 ... 78 4e-012
gb|CW221063.1|CW221063 104_656_11197697_148_37167_079 Sorgh... 76 1e-011
gb|CW355045.1|CW355045 fsbb001f019i07f0 Sorghum methylation... 76 1e-011
gb|CW355046.1|CW355046 fsbb001f019i07k0 Sorghum methylation... 76 1e-011
gb|BE361683.1|BE361683 DG1_81_F09.g1_A002 Dark Grown 1 (DG1... 76 1e-011
gb|CN138851.1|CN138851 OX1_14_H09.b1_A002 Oxidatively-stres... 76 1e-011
gb|CX606104.1|CX606104 ANR1_1_D12.b1_A002 Anaerobic roots S... 76 1e-011
gb|BF421136.1|BF421136 FM1_6_H03.g1_A003 Floral-Induced Mer... 74 5e-011
gb|CW374999.1|CW374999 fsbb001f052c13f0 Sorghum methylation... 72 2e-010
gb|CW064932.1|CW064932 104_311_10522850_114_30122 Sorghum m... 70 9e-010
gb|CW075985.1|CW075985 104_364_10810037_114_31802_101 Sorgh... 70 9e-010
gb|CW084629.1|CW084629 104_427_10945909_116_32511_055 Sorgh... 70 9e-010
gb|CW089034.1|CW089034 104_434_10948469_114_32601_027 Sorgh... 70 9e-010
gb|CW328078.1|CW328078 104_824_11479103_148_35988_096 Sorgh... 70 9e-010
gb|CW340402.1|CW340402 104_841_11485781_116_36146_023 Sorgh... 70 9e-010
gb|CW340403.1|CW340403 104_841_11485781_148_36147_023 Sorgh... 70 9e-010
gb|CW350958.1|CW350958 fsbb001f012i07k0 Sorghum methylation... 70 9e-010
gb|CW481932.1|CW481932 fsbb001f241m07f0 Sorghum methylation... 70 9e-010
gb|BG355811.1|BG355811 EM1_17_A06.g1_A002 Embryo 1 (EM1) So... 70 9e-010
gb|CD205907.1|CD205907 HS1_19_G06.b1_A012 Heat-shocked seed... 70 9e-010
gb|CD203831.1|CD203831 HS1_2_G09.b1_A012 Heat-shocked seedl... 68 3e-009
gb|CW369334.1|CW369334 fsbb001f043l06f0 Sorghum methylation... 66 1e-008
gb|CW143842.1|CW143842 104_535_11137628_148_34959_068 Sorgh... 64 5e-008
gb|CW276959.1|CW276959 104_750_11405768_116_35395_018 Sorgh... 64 5e-008
gb|CW357408.1|CW357408 fsbb001f024a20k0 Sorghum methylation... 64 5e-008
gb|CX608981.1|CX608981 ANR1_10_A01.b1_A002 Anaerobic roots ... 64 5e-008
gb|CW121987.1|CW121987 104_500_11110291_116_34665_074 Sorgh... 62 2e-007
gb|CW474162.1|CW474162 fsbb001f229n21k0 Sorghum methylation... 62 2e-007
gb|BG357676.1|BG357676 OV2_32_H07.g1_A002 Ovary 2 (OV2) Sor... 62 2e-007
gb|BZ344309.1|BZ344309 hp62c02.b2 WGS-SbicolorF (JM107 adap... 58 3e-006
gb|CW039719.1|CW039719 104_272_10505656_115_30390 Sorghum m... 58 3e-006
gb|CW339305.1|CW339305 104_840_11485203_116_36138_016 Sorgh... 58 3e-006
gb|CW420369.1|CW420369 fsbb001f126k15k0 Sorghum methylation... 58 3e-006
gb|CL159326.1|CL159326 104_348_10804169_114_31379_377 Sorgh... 56 1e-005
gb|CL159327.1|CL159327 104_348_10804169_116_31380_377 Sorgh... 56 1e-005
gb|CW143841.1|CW143841 104_535_11137628_116_34955_068 Sorgh... 56 1e-005
gb|CW219208.1|CW219208 104_653_11196612_148_37143_046 Sorgh... 56 1e-005
gb|CW224677.1|CW224677 104_662_11203952_148_37205_032 Sorgh... 56 1e-005
gb|CF488110.1|CF488110 POL1_47_G11.g1_A002 Pollen Sorghum b... 56 1e-005
gb|CL148344.1|CL148344 104_328_10593029_148_31782_153 Sorgh... 54 5e-005
gb|CW112880.1|CW112880 104_486_11105136_116_34548_082 Sorgh... 54 5e-005
gb|CW171322.1|CW171322 104_582_11155677_116_36529_095 Sorgh... 54 5e-005
gb|CW266135.1|CW266135 104_735_11232263_148_35265_084 Sorgh... 54 5e-005
gb|CW386938.1|CW386938 fsbb001f071b07f0 Sorghum methylation... 54 5e-005
gb|CW420842.1|CW420842 fsbb001f128f22f0 Sorghum methylation... 54 5e-005
gb|CW241950.1|CW241950 104_701_11219058_116_37554_073 Sorgh... 50 8e-004
gb|CW241951.1|CW241951 104_701_11219058_148_37553_073 Sorgh... 50 8e-004
gb|CW349542.1|CW349542 fsbb001f010h01f0 Sorghum methylation... 50 8e-004
gb|CW433383.1|CW433383 fsbb001f148j05f0 Sorghum methylation... 50 8e-004
gb|CW441491.1|CW441491 fsbb001f160k16f0 Sorghum methylation... 50 8e-004
gb|CW463110.1|CW463110 fsbb001f211i20f0 Sorghum methylation... 50 8e-004
gb|CW481933.1|CW481933 fsbb001f241m07k0 Sorghum methylation... 50 8e-004
gb|CW484442.1|CW484442 fsbb001f246j11k0 Sorghum methylation... 50 8e-004
gb|BZ369841.1|BZ369841 id13a01.g1 WGS-SbicolorF (DH5a methy... 48 0.003
gb|CL148343.1|CL148343 104_328_10593029_116_31783_153 Sorgh... 48 0.003
gb|CW216948.1|CW216948 104_650_11195395_148_37130_080 Sorgh... 48 0.003
gb|CW276960.1|CW276960 104_750_11405768_148_35399_018 Sorgh... 48 0.003
gb|CW469189.1|CW469189 fsbb001f221m13k0 Sorghum methylation... 48 0.003
gb|AW287387.2|AW287387 LG1_303_C07.b1_A002 Light Grown 1 (L... 48 0.003
gb|BF656970.1|BF656970 OV2_19_D03.b1_A002 Ovary 2 (OV2) Sor... 48 0.003
gb|BG240041.1|BG240041 OV1_17_B10.b1_A002 Ovary 1 (OV1) Sor... 48 0.003
gb|CD203710.1|CD203710 HS1_1_D09.b1_A012 Heat-shocked seedl... 48 0.003
gb|CD228200.1|CD228200 CCC1_6_B10.b1_A007 Callus culture/ce... 48 0.003
gb|CD233006.1|CD233006 SS1_11_H04.b1_A012 Salt-stressed see... 48 0.003
gb|CD432457.1|CD432457 ETH1_30_A08.b1_A002 Ethylene-treated... 48 0.003
gb|CN125758.1|CN125758 RHOH1_13_D02.b1_A002 Acid- and alkal... 48 0.003
gb|CX609223.1|CX609223 ANR1_11_H09.b1_A002 Anaerobic roots ... 48 0.003
gb|CL170072.1|CL170072 104_370_10813516_116_31789_220 Sorgh... 46 0.012
gb|CW093325.1|CW093325 104_456_10999713_116_37469_041 Sorgh... 46 0.012
gb|CW097911.1|CW097911 104_464_11002723_148_34364_076 Sorgh... 46 0.012
gb|CW163568.1|CW163568 104_571_11151530_148_36459_011 Sorgh... 46 0.012
gb|CW226326.1|CW226326 104_664_11204826_116_37222_075 Sorgh... 46 0.012
gb|CW255629.1|CW255629 104_720_11226341_148_35134_025 Sorgh... 46 0.012
gb|CW383841.1|CW383841 fsbb001f066j05k0 Sorghum methylation... 46 0.012
gb|CW451703.1|CW451703 fsbb001f191o08f0 Sorghum methylation... 46 0.012
gb|CW467468.1|CW467468 fsbb001f219c19k0 Sorghum methylation... 46 0.012
gb|CW469802.1|CW469802 fsbb001f222k22f0 Sorghum methylation... 46 0.012
gb|CW470661.1|CW470661 fsbb001f223p20k0 Sorghum methylation... 46 0.012
gb|CW491288.1|CW491288 fsbb001f281b12k0 Sorghum methylation... 46 0.012
gb|CF481069.1|CF481069 POL1_69_F10.g1_A002 Pollen Sorghum b... 46 0.012
gb|CF486170.1|CF486170 POL1_36_D09.b1_A002 Pollen Sorghum b... 46 0.012
gb|CW084628.1|CW084628 104_427_10945909_114_32507_055 Sorgh... 44 0.049
gb|CW211209.1|CW211209 104_642_11190386_148_37012_015 Sorgh... 44 0.049
gb|CL170221.1|CL170221 104_370_10813641_148_31788_345 Sorgh... 42 0.19
gb|CL180812.1|CL180812 104_391_10896290_116_31928_050 Sorgh... 42 0.19
gb|CW111950.1|CW111950 104_485_11104615_148_34533_022 Sorgh... 42 0.19
gb|CW174259.1|CW174259 104_586_11157301_148_36563_059 Sorgh... 42 0.19
gb|CW280822.1|CW280822 104_756_11407836_116_35450_044 Sorgh... 42 0.19
gb|CW280823.1|CW280823 104_756_11407836_148_35454_044 Sorgh... 42 0.19
gb|CW295643.1|CW295643 104_777_11461048_148_35627_064 Sorgh... 42 0.19
gb|CW400557.1|CW400557 fsbb001f090o22f0 Sorghum methylation... 42 0.19
gb|CW432733.1|CW432733 fsbb001f147j17k0 Sorghum methylation... 42 0.19
gb|CW467940.1|CW467940 fsbb001f219n10k0 Sorghum methylation... 42 0.19
gb|BE918114.1|BE918114 OV1_2_B04.b1_A002 Ovary 1 (OV1) Sorg... 42 0.19
gb|BG240465.1|BG240465 OV1_30_D03.b1_A002 Ovary 1 (OV1) Sor... 42 0.19
gb|BG240770.1|BG240770 OV1_38_A10.g1_A002 Ovary 1 (OV1) Sor... 42 0.19
gb|BG412481.1|BG412481 OV2_34_H03.g1_A002 Ovary 2 (OV2) Sor... 42 0.19
gb|BG412790.1|BG412790 OV2_34_H02.b1_A002 Ovary 2 (OV2) Sor... 42 0.19
gb|CD233100.1|CD233100 SS1_11_H04.g1_A012 Salt-stressed see... 42 0.19
>gb|CW321706.1|CW321706 104_815_11475696_148_35943_094 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11475696, DNA
sequence
Length = 670
Score = 396 bits (200), Expect = e-108
Identities = 260/280 (92%)
Strand = Plus / Plus
Query: 1438 atcatggagagcaccatcgccgacttcgtcaagccagaggggtacatgccctggaacggc 1497
||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct: 1 atcatggagagcaccatcgccgacttcatcaagccggaggggtacatgccctggaacggc 60
Query: 1498 gacttcgccctcaagacgctctactacgccgagtacaacaaccgcgggcccggcgccggc 1557
||||||| | |||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 61 gacttcggcatcaagacgctcttctacgccgagtacaacaaccgcgggcccggcgccggc 120
Query: 1558 accagcaagagggtcaactggcccggcttccacgtcatcggacggaaggaggccgagccg 1617
||||||||||||||||||||||| || |||||||||||| |||||||| ||||||| |
Sbjct: 121 accagcaagagggtcaactggcctgggttccacgtcatcacccggaaggacgccgagcag 180
Query: 1618 ttcaccgccgggccgttcatcgacggcgccatgtggctcaagtacaccggcgcgccgcac 1677
||||||||||||||||||||||||||||| |||||||||||| ||||||| ||||||||
Sbjct: 181 ttcaccgccgggccgttcatcgacggcgcgctgtggctcaagttcaccggcacgccgcac 240
Query: 1678 atacttggtttcaagttctaaaggccgcatggcatggcat 1717
|| || || ||||||| |||||||||||||||||||||||
Sbjct: 241 atcctcgggttcaagtcctaaaggccgcatggcatggcat 280
Score = 52.0 bits (26), Expect = 2e-004
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 1889 gaaaagtcctttggacaatgatttgttgcgacattgcttaat 1930
|||||||| ||||||||||||| ||||||||| ||| |||||
Sbjct: 487 gaaaagtcttttggacaatgatatgttgcgacgttggttaat 528
>gb|CF486088.1|CF486088 POL1_35_D06.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_35_D06_A002 5', mRNA sequence
Length = 576
Score = 180 bits (91), Expect = 3e-043
Identities = 196/231 (84%)
Strand = Plus / Plus
Query: 1017 cgggttcatctgcaagaacatggggttccacaacacggccggcgcggagcggcaccaggc 1076
|||||||||||||||| ||||| ||| ||||||||| || |||| | ||||||||
Sbjct: 118 cgggttcatctgcaagtcgatgggtttcgtcaacacggcggggccggatggtcaccaggc 177
Query: 1077 ggtggcgctccgggtgcagggggacctcgcggcgttctacaactgccggttcgacgcgtt 1136
||||||| | | |||||||||||| | ||| ||||| ||||||||||||||| | ||
Sbjct: 178 ggtggcgatgcacgtgcagggggacatgtcggtgttcttcaactgccggttcgaggggta 237
Query: 1137 ccaggacacgctgtacgtgcacgcgcggcggcagttcttccgcaactgcgtggtctccgg 1196
||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||
Sbjct: 238 ccaggacacgctgtacgtgcacgcgaaccggcagttcttccgcaactgcgaggtgctggg 297
Query: 1197 caccatcgacttcatcttcggcaactcggcggcggtgttccagaactgcct 1247
|||| | ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 298 caccgtggacttcatcttcggcaactcggcggcgctgttccagaactgcct 348
Score = 54.0 bits (27), Expect = 5e-005
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 906 caacatcttcatgtacggcgacgggcc 932
|||||||||||||||||||||||||||
Sbjct: 7 caacatcttcatgtacggcgacgggcc 33
>gb|CW467467.1|CW467467 fsbb001f219c19f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f219c19, DNA
sequence
Length = 376
Score = 178 bits (90), Expect = 1e-042
Identities = 141/158 (89%)
Strand = Plus / Minus
Query: 1560 cagcaagagggtcaactggcccggcttccacgtcatcggacggaaggaggccgagccgtt 1619
|||||||||||||||||| || || || |||||||||| |||||||| ||||||| |||
Sbjct: 376 cagcaagagggtcaactgacctgggttgcacgtcatcgcccggaaggacgccgagcagtt 317
Query: 1620 caccgccgggccgttcatcgacggcgccatgtggctcaagtacaccggcgcgccgcacat 1679
|||||||||||||||||| |||||||| |||||||||||| ||||||| ||||||||||
Sbjct: 316 caccgccgggccgttcattgacggcgcgctgtggctcaagttcaccggcacgccgcacat 257
Query: 1680 acttggtttcaagttctaaaggccgcatggcatggcat 1717
||||| ||||||| ||||||||||||||||||||||
Sbjct: 256 ccttgggttcaagtcataaaggccgcatggcatggcat 219
>gb|CW155885.1|CW155885 104_558_11146378_148_36365_037 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11146378, DNA
sequence
Length = 728
Score = 163 bits (82), Expect = 8e-038
Identities = 139/158 (87%)
Strand = Plus / Minus
Query: 1090 gtgcagggggacctcgcggcgttctacaactgccggttcgacgcgttccaggacacgctg 1149
|||||||||||| | ||| ||||| ||||||||||||||| | || |||||||||||||
Sbjct: 722 gtgcagggggacatgtcggtgttcttcaactgccggttcgaggggtaccaggacacgctg 663
Query: 1150 tacgtgcacgcgcggcggcagttcttccgcaactgcgtggtctccggcaccatcgacttc 1209
|||||||||||| |||||||||||||||||||||| ||| |||||| | ||||||
Sbjct: 662 tacgtgcacgcgaaccggcagttcttccgcaactgcgaggtgctgggcaccgtggacttc 603
Query: 1210 atcttcggcaactcggcggcggtgttccagaactgcct 1247
||||||||||||||||||||| ||||||||||||||||
Sbjct: 602 atcttcggcaactcggcggcgctgttccagaactgcct 565
Score = 123 bits (62), Expect = 7e-026
Identities = 95/106 (89%)
Strand = Plus / Minus
Query: 1495 ggcgacttcgccctcaagacgctctactacgccgagtacaacaaccgcgggcccggcgcc 1554
|||||| ||| |||||||||||||||||||||||||||| |||| ||| || ||||||
Sbjct: 317 ggcgacctcggcctcaagacgctctactacgccgagtacgccaacaccggcccgggcgcc 258
Query: 1555 ggcaccagcaagagggtcaactggcccggcttccacgtcatcggac 1600
|||||||||||||||||||||||||| |||| || |||||||||||
Sbjct: 257 ggcaccagcaagagggtcaactggccgggctaccgcgtcatcggac 212
>gb|CL150595.1|CL150595 104_332_10778646_114_31357_198 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10778646, DNA
sequence
Length = 794
Score = 149 bits (75), Expect = 1e-033
Identities = 156/183 (85%)
Strand = Plus / Minus
Query: 1069 caccaggcggtggcgctccgggtgcagggggacctcgcggcgttctacaactgccggttc 1128
||||||||||||||||| ||||||||| | ||| | ||||||||||| | |||||||||
Sbjct: 221 caccaggcggtggcgctgcgggtgcagagcgacatgtcggcgttctacgagtgccggttc 162
Query: 1129 gacgcgttccaggacacgctgtacgtgcacgcgcggcggcagttcttccgcaactgcgtg 1188
|||| || |||||||||||||||| |||| || | ||||||| || |||| | |||||
Sbjct: 161 gacgggtaccaggacacgctgtacacgcacacgagccggcagtactaccgcgagtgcgtc 102
Query: 1189 gtctccggcaccatcgacttcatcttcggcaactcggcggcggtgttccagaactgcctc 1248
|| | ||||||||||||||||||||||||||| || || |||||||||||||||||||
Sbjct: 101 atcacgggcaccatcgacttcatcttcggcaacgcgcaggtggtgttccagaactgcctc 42
Query: 1249 atc 1251
|||
Sbjct: 41 atc 39
Score = 42.1 bits (21), Expect = 0.19
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 843 gtacgtcatctacgtgaaggccggc 867
||||||||| |||||||||||||||
Sbjct: 447 gtacgtcatgtacgtgaaggccggc 423
>gb|CL182214.1|CL182214 104_393_10897273_116_31922_265 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10897273, DNA
sequence
Length = 729
Score = 149 bits (75), Expect = 1e-033
Identities = 156/183 (85%)
Strand = Plus / Minus
Query: 1069 caccaggcggtggcgctccgggtgcagggggacctcgcggcgttctacaactgccggttc 1128
||||||||||||||||| ||||||||| | ||| | ||||||||||| | |||||||||
Sbjct: 311 caccaggcggtggcgctgcgggtgcagagcgacatgtcggcgttctacgagtgccggttc 252
Query: 1129 gacgcgttccaggacacgctgtacgtgcacgcgcggcggcagttcttccgcaactgcgtg 1188
|||| || |||||||||||||||| |||| || | ||||||| || |||| | |||||
Sbjct: 251 gacgggtaccaggacacgctgtacacgcacacgagccggcagtactaccgcgagtgcgtc 192
Query: 1189 gtctccggcaccatcgacttcatcttcggcaactcggcggcggtgttccagaactgcctc 1248
|| | ||||||||||||||||||||||||||| || || |||||||||||||||||||
Sbjct: 191 atcacgggcaccatcgacttcatcttcggcaacgcgcaggtggtgttccagaactgcctc 132
Query: 1249 atc 1251
|||
Sbjct: 131 atc 129
Score = 42.1 bits (21), Expect = 0.19
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 843 gtacgtcatctacgtgaaggccggc 867
||||||||| |||||||||||||||
Sbjct: 537 gtacgtcatgtacgtgaaggccggc 513
Score = 42.1 bits (21), Expect = 0.19
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 1266 catggacaaccagcagaactcggtgacggcgca 1298
||||||||||||||||||| |||||||||||
Sbjct: 114 catggacaaccagcagaacatcgtgacggcgca 82
>gb|CW192233.1|CW192233 104_614_11178915_116_36943_006 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11178915, DNA
sequence
Length = 655
Score = 149 bits (75), Expect = 1e-033
Identities = 156/183 (85%)
Strand = Plus / Plus
Query: 1069 caccaggcggtggcgctccgggtgcagggggacctcgcggcgttctacaactgccggttc 1128
||||||||||||||||| ||||||||| | ||| | ||||||||||| | |||||||||
Sbjct: 349 caccaggcggtggcgctgcgggtgcagagcgacatgtcggcgttctacgagtgccggttc 408
Query: 1129 gacgcgttccaggacacgctgtacgtgcacgcgcggcggcagttcttccgcaactgcgtg 1188
|||| || |||||||||||||||| |||| || | ||||||| || |||| | |||||
Sbjct: 409 gacgggtaccaggacacgctgtacacgcacacgagccggcagtactaccgcgagtgcgtc 468
Query: 1189 gtctccggcaccatcgacttcatcttcggcaactcggcggcggtgttccagaactgcctc 1248
|| | ||||||||||||||||||||||||||| || || |||||||||||||||||||
Sbjct: 469 atcacgggcaccatcgacttcatcttcggcaacgcgcaggtggtgttccagaactgcctc 528
Query: 1249 atc 1251
|||
Sbjct: 529 atc 531
Score = 42.1 bits (21), Expect = 0.19
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 1266 catggacaaccagcagaactcggtgacggcgca 1298
||||||||||||||||||| |||||||||||
Sbjct: 546 catggacaaccagcagaacatcgtgacggcgca 578
Score = 42.1 bits (21), Expect = 0.19
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 843 gtacgtcatctacgtgaaggccggc 867
||||||||| |||||||||||||||
Sbjct: 123 gtacgtcatgtacgtgaaggccggc 147
>gb|CW281478.1|CW281478 104_757_11408201_116_35463_077 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11408201, DNA
sequence
Length = 479
Score = 149 bits (75), Expect = 1e-033
Identities = 156/183 (85%)
Strand = Plus / Plus
Query: 1069 caccaggcggtggcgctccgggtgcagggggacctcgcggcgttctacaactgccggttc 1128
||||||||||||||||| ||||||||| | ||| | ||||||||||| | |||||||||
Sbjct: 103 caccaggcggtggcgctgcgggtgcagagcgacatgtcggcgttctacgagtgccggttc 162
Query: 1129 gacgcgttccaggacacgctgtacgtgcacgcgcggcggcagttcttccgcaactgcgtg 1188
|||| || |||||||||||||||| |||| || | ||||||| || |||| | |||||
Sbjct: 163 gacgggtaccaggacacgctgtacacgcacacgagccggcagtactaccgcgagtgcgtc 222
Query: 1189 gtctccggcaccatcgacttcatcttcggcaactcggcggcggtgttccagaactgcctc 1248
|| | ||||||||||||||||||||||||||| || || |||||||||||||||||||
Sbjct: 223 atcacgggcaccatcgacttcatcttcggcaacgcgcaggtggtgttccagaactgcctc 282
Query: 1249 atc 1251
|||
Sbjct: 283 atc 285
Score = 42.1 bits (21), Expect = 0.19
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 1266 catggacaaccagcagaactcggtgacggcgca 1298
||||||||||||||||||| |||||||||||
Sbjct: 300 catggacaaccagcagaacatcgtgacggcgca 332
>gb|CW443774.1|CW443774 fsbb001f164a20k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f164a20, DNA
sequence
Length = 456
Score = 149 bits (75), Expect = 1e-033
Identities = 156/183 (85%)
Strand = Plus / Plus
Query: 1069 caccaggcggtggcgctccgggtgcagggggacctcgcggcgttctacaactgccggttc 1128
||||||||||||||||| ||||||||| | ||| | ||||||||||| | |||||||||
Sbjct: 230 caccaggcggtggcgctgcgggtgcagagcgacatgtcggcgttctacgagtgccggttc 289
Query: 1129 gacgcgttccaggacacgctgtacgtgcacgcgcggcggcagttcttccgcaactgcgtg 1188
|||| || |||||||||||||||| |||| || | ||||||| || |||| | |||||
Sbjct: 290 gacgggtaccaggacacgctgtacacgcacacgagccggcagtactaccgcgagtgcgtc 349
Query: 1189 gtctccggcaccatcgacttcatcttcggcaactcggcggcggtgttccagaactgcctc 1248
|| | ||||||||||||||||||||||||||| || || |||||||||||||||||||
Sbjct: 350 atcacgggcaccatcgacttcatcttcggcaacgcgcaggtggtgttccagaactgcctc 409
Query: 1249 atc 1251
|||
Sbjct: 410 atc 412
Score = 42.1 bits (21), Expect = 0.19
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 843 gtacgtcatctacgtgaaggccggc 867
||||||||| |||||||||||||||
Sbjct: 4 gtacgtcatgtacgtgaaggccggc 28
>gb|CW036788.1|CW036788 104_268_10503969_114_30381 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10503969,
DNA sequence
Length = 587
Score = 143 bits (72), Expect = 7e-032
Identities = 87/92 (94%)
Strand = Plus / Minus
Query: 7 atggcaaaggctctcctaggtggcctatcggcgatcctcgtcgtggcggtggtcgtcggt 66
|||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||
Sbjct: 92 atggcaaaggctctcctaggtggcctgtcggcgatcctcgtcgtcgcagtggtcgtcggc 33
Query: 67 gtggtcgccaccgtcacccgctccggcaagaa 98
||||||||||||||||| ||||||||||||||
Sbjct: 32 gtggtcgccaccgtcactcgctccggcaagaa 1
>gb|CW037307.1|CW037307 104_269_10504266_114_30383 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10504266,
DNA sequence
Length = 617
Score = 143 bits (72), Expect = 7e-032
Identities = 87/92 (94%)
Strand = Plus / Minus
Query: 7 atggcaaaggctctcctaggtggcctatcggcgatcctcgtcgtggcggtggtcgtcggt 66
|||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||
Sbjct: 92 atggcaaaggctctcctaggtggcctgtcggcgatcctcgtcgtcgcagtggtcgtcggc 33
Query: 67 gtggtcgccaccgtcacccgctccggcaagaa 98
||||||||||||||||| ||||||||||||||
Sbjct: 32 gtggtcgccaccgtcactcgctccggcaagaa 1
>gb|CW057246.1|CW057246 104_299_10518117_115_30171 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10518117, DNA
sequence
Length = 581
Score = 123 bits (62), Expect = 7e-026
Identities = 143/170 (84%)
Strand = Plus / Minus
Query: 1017 cgggttcatctgcaagaacatggggttccacaacacggccggcgcggagcggcaccaggc 1076
|||||||||||||||| ||||| ||| ||||||||| || |||| | ||||||||
Sbjct: 193 cgggttcatctgcaagtcgatgggtttcgtcaacacggcggggccggatggtcaccaggc 134
Query: 1077 ggtggcgctccgggtgcagggggacctcgcggcgttctacaactgccggttcgacgcgtt 1136
||||||| | | |||||||||||| | ||| ||||| ||||||||||||||| | ||
Sbjct: 133 ggtggcgatgcacgtgcagggggacatgtcggtgttcttcaactgccggttcgaggggta 74
Query: 1137 ccaggacacgctgtacgtgcacgcgcggcggcagttcttccgcaactgcg 1186
||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 73 ccaggacacgctgtacgtgcacgcgaaccggcagttcttccgcaactgcg 24
Score = 69.9 bits (35), Expect = 9e-010
Identities = 74/87 (85%)
Strand = Plus / Minus
Query: 846 cgtcatctacgtgaaggccggcctctacgacgagatcgtcatggtccccaaggacaaggt 905
|||||||||||||||| ||||| | ||| | ||| ||||| || |||||| ||| ||
Sbjct: 364 cgtcatctacgtgaagtccggcgtgtacaaggagtacgtcaccgtgcccaagaacatggc 305
Query: 906 caacatcttcatgtacggcgacgggcc 932
|||||||||||||||||||||||||||
Sbjct: 304 caacatcttcatgtacggcgacgggcc 278
>gb|CF486010.1|CF486010 POL1_35_D06.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_35_D06_A002 3', mRNA sequence
Length = 713
Score = 123 bits (62), Expect = 7e-026
Identities = 95/106 (89%)
Strand = Plus / Plus
Query: 1495 ggcgacttcgccctcaagacgctctactacgccgagtacaacaaccgcgggcccggcgcc 1554
|||||| ||| |||||||||||||||||||||||||||| |||| ||| || ||||||
Sbjct: 251 ggcgacctcggcctcaagacgctctactacgccgagtacgccaacaccggcccgggcgcc 310
Query: 1555 ggcaccagcaagagggtcaactggcccggcttccacgtcatcggac 1600
|||||||||||||||||||||||||| |||| || |||||||||||
Sbjct: 311 ggcaccagcaagagggtcaactggccgggctaccgcgtcatcggac 356
>gb|CW107343.1|CW107343 104_477_11096531_148_34472_040 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11096531, DNA
sequence
Length = 281
Score = 121 bits (61), Expect = 3e-025
Identities = 130/153 (84%)
Strand = Plus / Plus
Query: 1069 caccaggcggtggcgctccgggtgcagggggacctcgcggcgttctacaactgccggttc 1128
||||||||||||||||| ||||||||| | ||| | ||||||||||| | |||||||||
Sbjct: 115 caccaggcggtggcgctgcgggtgcagagcgacatgtcggcgttctacgagtgccggttc 174
Query: 1129 gacgcgttccaggacacgctgtacgtgcacgcgcggcggcagttcttccgcaactgcgtg 1188
|||| || |||||||||||||||| |||| || | ||||||| || |||| | |||||
Sbjct: 175 gacgggtaccaggacacgctgtacacgcacacgagccggcagtactaccgcgagtgcgtc 234
Query: 1189 gtctccggcaccatcgacttcatcttcggcaac 1221
|| | |||||||||||||||||||||||||||
Sbjct: 235 atcacgggcaccatcgacttcatcttcggcaac 267
>gb|CW468784.1|CW468784 fsbb001f221c20f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f221c20, DNA
sequence
Length = 465
Score = 117 bits (59), Expect = 4e-024
Identities = 128/151 (84%)
Strand = Plus / Minus
Query: 1134 gttccaggacacgctgtacgtgcacgcgcggcggcagttcttccgcaactgcgtggtctc 1193
|||||||||||||||||||| |||| | | |||||||| |||||||||| | ||||
Sbjct: 151 gttccaggacacgctgtacgcgcactccaaggcgcagttctaccgcaactgcatcatctc 92
Query: 1194 cggcaccatcgacttcatcttcggcaactcggcggcggtgttccagaactgcctcatcat 1253
|||||| | ||||||||||||||| || ||||||||||||||||||||||| || ||||
Sbjct: 91 cggcacggtggacttcatcttcggcgacgcggcggcggtgttccagaactgcatcctcat 32
Query: 1254 cacgcggcggcccatggacaaccagcagaac 1284
| ||| || || ||||||||||||||||||
Sbjct: 31 cctgcgccgcccgatggacaaccagcagaac 1
Score = 71.9 bits (36), Expect = 2e-010
Identities = 54/60 (90%)
Strand = Plus / Minus
Query: 1036 atggggttccacaacacggccggcgcggagcggcaccaggcggtggcgctccgggtgcag 1095
||||| ||||| |||||||||||||||||| |||||||||||||||||| | |||||||
Sbjct: 249 atgggtttccagaacacggccggcgcggagaagcaccaggcggtggcgctgctggtgcag 190
>gb|BG356421.1|BG356421 EM1_22_D02.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA sequence
Length = 530
Score = 117 bits (59), Expect = 4e-024
Identities = 94/106 (88%)
Strand = Plus / Plus
Query: 1495 ggcgacttcgccctcaagacgctctactacgccgagtacaacaaccgcgggcccggcgcc 1554
|||||| ||| ||||||||||||||| |||||||||||| |||| ||| || ||||||
Sbjct: 90 ggcgacctcggcctcaagacgctctantacgccgagtacgccaacaccggcccgggcgcc 149
Query: 1555 ggcaccagcaagagggtcaactggcccggcttccacgtcatcggac 1600
|||||||||||||||||||||||||| |||| || |||||||||||
Sbjct: 150 ggcaccagcaagagggtcaactggccgggctaccgcgtcatcggac 195
>gb|CW349543.1|CW349543 fsbb001f010h01k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f010h01, DNA
sequence
Length = 594
Score = 99.6 bits (50), Expect = 1e-018
Identities = 110/130 (84%)
Strand = Plus / Plus
Query: 1116 caactgccggttcgacgcgttccaggacacgctgtacgtgcacgcgcggcggcagttctt 1175
||||||||| | ||||||| ||||||||||||||||| |||| | | ||| ||||
Sbjct: 451 caactgccgcatggacgcgtaccaggacacgctgtacgcgcactccaaggcgcaattcta 510
Query: 1176 ccgcaactgcgtggtctccggcaccatcgacttcatcttcggcaactcggcggcggtgtt 1235
|||||||||||| ||||||| |||||||||||| |||||||| || |||||||||||||
Sbjct: 511 ccgcaactgcgtcatctccgggaccatcgacttcgtcttcggcgacgcggcggcggtgtt 570
Query: 1236 ccagaactgc 1245
||| ||||||
Sbjct: 571 ccaaaactgc 580
Score = 54.0 bits (27), Expect = 5e-005
Identities = 51/59 (86%)
Strand = Plus / Plus
Query: 1037 tggggttccacaacacggccggcgcggagcggcaccaggcggtggcgctccgggtgcag 1095
||||||||| |||||||| ||||||| | |||||||||||||||||| | |||||||
Sbjct: 372 tggggttccggaacacggcgggcgcggcgaagcaccaggcggtggcgctgctggtgcag 430
>gb|BG048275.1|BG048275 OV1_16_B07.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence
Length = 513
Score = 93.7 bits (47), Expect = 6e-017
Identities = 98/115 (85%)
Strand = Plus / Plus
Query: 1137 ccaggacacgctgtacgtgcacgcgcggcggcagttcttccgcaactgcgtggtctccgg 1196
|||||||||||||||| |||| || | ||||||| || |||| | ||||| || | ||
Sbjct: 9 ccaggacacgctgtacacgcacacgagccggcagtactaccgcgagtgcgtcatcacggg 68
Query: 1197 caccatcgacttcatcttcggcaactcggcggcggtgttccagaactgcctcatc 1251
||||||||||||||||||||||||| || || ||||||||||||||||||||||
Sbjct: 69 caccatcgacttcatcttcggcaacgcgcaggtggtgttccagaactgcctcatc 123
Score = 42.1 bits (21), Expect = 0.19
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 1266 catggacaaccagcagaactcggtgacggcgca 1298
||||||||||||||||||| |||||||||||
Sbjct: 138 catggacaaccagcagaacatcgtgacggcgca 170
>gb|BG049225.1|BG049225 OV1_17_B10.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence
Length = 661
Score = 93.7 bits (47), Expect = 6e-017
Identities = 98/115 (85%)
Strand = Plus / Plus
Query: 1137 ccaggacacgctgtacgtgcacgcgcggcggcagttcttccgcaactgcgtggtctccgg 1196
|||||||||||||||| |||| || | ||||||| || |||| | ||||| || | ||
Sbjct: 2 ccaggacacgctgtacacgcacacgagccggcagtactaccgcgagtgcgtcatcacggg 61
Query: 1197 caccatcgacttcatcttcggcaactcggcggcggtgttccagaactgcctcatc 1251
||||||||||||||||||||||||| || || ||||||||||||||||||||||
Sbjct: 62 caccatcgacttcatcttcggcaacgcgcaggtggtgttccagaactgcctcatc 116
Score = 42.1 bits (21), Expect = 0.19
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 1266 catggacaaccagcagaactcggtgacggcgca 1298
||||||||||||||||||| |||||||||||
Sbjct: 131 catggacaaccagcagaacatcgtgacggcgca 163
>gb|CW172749.1|CW172749 104_584_11156458_148_36543_045 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11156458, DNA
sequence
Length = 626
Score = 91.7 bits (46), Expect = 2e-016
Identities = 127/154 (82%)
Strand = Plus / Plus
Query: 1068 gcaccaggcggtggcgctccgggtgcagggggacctcgcggcgttctacaactgccggtt 1127
||||||||||||||||||||| ||| | ||||| ||||||||||| |||| | ||
Sbjct: 207 gcaccaggcggtggcgctccgcgtgggcgccgacctgtcggcgttctaccgctgcagctt 266
Query: 1128 cgacgcgttccaggacacgctgtacgtgcacgcgcggcggcagttcttccgcaactgcgt 1187
|| | | |||||||||||||||||||||| | | ||||||||||||||| ||||||
Sbjct: 267 cgtgggctaccaggacacgctgtacgtgcactccctccggcagttcttccgcgactgcga 326
Query: 1188 ggtctccggcaccatcgacttcatcttcggcaac 1221
||| |||||||||||||||| |||||||||||
Sbjct: 327 catctacggcaccatcgacttcgtcttcggcaac 360
>gb|CW216947.1|CW216947 104_650_11195395_116_37129_080 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11195395, DNA
sequence
Length = 716
Score = 91.7 bits (46), Expect = 2e-016
Identities = 127/154 (82%)
Strand = Plus / Plus
Query: 1068 gcaccaggcggtggcgctccgggtgcagggggacctcgcggcgttctacaactgccggtt 1127
||||||||||||||||||||| ||| | ||||| ||||||||||| |||| | ||
Sbjct: 411 gcaccaggcggtggcgctccgcgtgggcgccgacctgtcggcgttctaccgctgcagctt 470
Query: 1128 cgacgcgttccaggacacgctgtacgtgcacgcgcggcggcagttcttccgcaactgcgt 1187
|| | | |||||||||||||||||||||| | | ||||||||||||||| ||||||
Sbjct: 471 cgtgggctaccaggacacgctgtacgtgcactccctccggcagttcttccgcgactgcga 530
Query: 1188 ggtctccggcaccatcgacttcatcttcggcaac 1221
||| |||||||||||||||| |||||||||||
Sbjct: 531 catctacggcaccatcgacttcgtcttcggcaac 564
>gb|CW339306.1|CW339306 104_840_11485203_148_36139_016 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11485203, DNA
sequence
Length = 669
Score = 91.7 bits (46), Expect = 2e-016
Identities = 127/154 (82%)
Strand = Plus / Plus
Query: 1068 gcaccaggcggtggcgctccgggtgcagggggacctcgcggcgttctacaactgccggtt 1127
||||||||||||||||||||| ||| | ||||| ||||||||||| |||| | ||
Sbjct: 306 gcaccaggcggtggcgctccgcgtgggcgccgacctgtcggcgttctaccgctgcagctt 365
Query: 1128 cgacgcgttccaggacacgctgtacgtgcacgcgcggcggcagttcttccgcaactgcgt 1187
|| | | |||||||||||||||||||||| | | ||||||||||||||| ||||||
Sbjct: 366 cgtgggctaccaggacacgctgtacgtgcactccctccggcagttcttccgcgactgcga 425
Query: 1188 ggtctccggcaccatcgacttcatcttcggcaac 1221
||| |||||||||||||||| |||||||||||
Sbjct: 426 catctacggcaccatcgacttcgtcttcggcaac 459
>gb|CL176112.1|CL176112 104_382_10892904_116_31763_120 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10892904, DNA
sequence
Length = 634
Score = 89.7 bits (45), Expect = 9e-016
Identities = 102/121 (84%)
Strand = Plus / Plus
Query: 1134 gttccaggacacgctgtacgtgcacgcgcggcggcagttcttccgcaactgcgtggtctc 1193
|||||||||||||||||||| |||| | | |||||||| |||||||||| | ||||
Sbjct: 498 gttccaggacacgctgtacgcgcactccaaggcgcagttctaccgcaactgcatcatctc 557
Query: 1194 cggcaccatcgacttcatcttcggcaactcggcggcggtgttccagaactgcctcatcat 1253
|||||| | ||||||||||||||| || |||||||||||||||| |||||| || ||||
Sbjct: 558 cggcacggtggacttcatcttcggcgacgcggcggcggtgttccaaaactgcatcctcat 617
Query: 1254 c 1254
|
Sbjct: 618 c 618
Score = 71.9 bits (36), Expect = 2e-010
Identities = 54/60 (90%)
Strand = Plus / Plus
Query: 1036 atggggttccacaacacggccggcgcggagcggcaccaggcggtggcgctccgggtgcag 1095
||||| ||||| |||||||||||||||||| |||||||||||||||||| | |||||||
Sbjct: 400 atgggtttccagaacacggccggcgcggagaagcaccaggcggtggcgctgctggtgcag 459
>gb|CW117897.1|CW117897 104_494_11107909_148_34622_061 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11107909, DNA
sequence
Length = 220
Score = 85.7 bits (43), Expect = 1e-014
Identities = 76/87 (87%)
Strand = Plus / Plus
Query: 1137 ccaggacacgctgtacgtgcacgcgcggcggcagttcttccgcaactgcgtggtctccgg 1196
|||||||||||| ||| |||||||| |||||||||||||||| ||||| ||| | ||
Sbjct: 15 ccaggacacgctctacacgcacgcgcagcggcagttcttccgcgactgccgcgtcacggg 74
Query: 1197 caccatcgacttcatcttcggcaactc 1223
||||||||||||||||||| |||||||
Sbjct: 75 caccatcgacttcatcttcagcaactc 101
>gb|CW172299.1|CW172299 104_583_11156215_148_36534_024 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11156215, DNA
sequence
Length = 531
Score = 83.8 bits (42), Expect = 6e-014
Identities = 60/66 (90%)
Strand = Plus / Minus
Query: 1498 gacttcgccctcaagacgctctactacgccgagtacaacaaccgcgggcccggcgccggc 1557
|||||||| ||| | ||||||||||||||||||||||||||| ||||||| ||||||| |
Sbjct: 353 gacttcgcgctcgacacgctctactacgccgagtacaacaacagcgggccgggcgccgac 294
Query: 1558 accagc 1563
||||||
Sbjct: 293 accagc 288
>gb|CW192234.1|CW192234 104_614_11178915_148_36944_006 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11178915, DNA
sequence
Length = 655
Score = 81.8 bits (41), Expect = 2e-013
Identities = 53/57 (92%)
Strand = Plus / Minus
Query: 1195 ggcaccatcgacttcatcttcggcaactcggcggcggtgttccagaactgcctcatc 1251
||||||||||||||||||||||||||| || || ||||||||||||||||||||||
Sbjct: 606 ggcaccatcgacttcatcttcggcaacgcgcaggtggtgttccagaactgcctcatc 550
Score = 42.1 bits (21), Expect = 0.19
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 1266 catggacaaccagcagaactcggtgacggcgca 1298
||||||||||||||||||| |||||||||||
Sbjct: 535 catggacaaccagcagaacatcgtgacggcgca 503
>gb|AW746386.1|AW746386 WS1_49_G01.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA, mRNA
sequence
Length = 561
Score = 77.8 bits (39), Expect = 4e-012
Identities = 48/51 (94%)
Strand = Plus / Plus
Query: 1513 acgctctactacgccgagtacaacaaccgcgggcccggcgccggcaccagc 1563
||||||||||||||||||||||||||| ||||||| ||||||| |||||||
Sbjct: 143 acgctctactacgccgagtacaacaacagcgggccgggcgccgacaccagc 193
>gb|AW924063.1|AW924063 WS1_49_G01.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA, mRNA
sequence
Length = 565
Score = 77.8 bits (39), Expect = 4e-012
Identities = 48/51 (94%)
Strand = Plus / Plus
Query: 1513 acgctctactacgccgagtacaacaaccgcgggcccggcgccggcaccagc 1563
||||||||||||||||||||||||||| ||||||| ||||||| |||||||
Sbjct: 471 acgctctactacgccgagtacaacaacagcgggccgggcgccgacaccagc 521
>gb|CW221063.1|CW221063 104_656_11197697_148_37167_079 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11197697, DNA
sequence
Length = 667
Score = 75.8 bits (38), Expect = 1e-011
Identities = 92/110 (83%)
Strand = Plus / Minus
Query: 1483 atgccctggaacggcgacttcgccctcaagacgctctactacgccgagtacaacaaccgc 1542
||||| ||| ||||||||| ||| |||| ||||||| ||||||||||||||||||| |
Sbjct: 387 atgccgtgggacggcgactacgcgctcagcacgctcttctacgccgagtacaacaactcc 328
Query: 1543 gggcccggcgccggcaccagcaagagggtcaactggcccggcttccacgt 1592
|| |||||||| | |||||||| |||||| ||||| |||||||||||
Sbjct: 327 ggccccggcgcggacaccagcaggagggtggcatggccgggcttccacgt 278
>gb|CW355045.1|CW355045 fsbb001f019i07f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f019i07, DNA
sequence
Length = 717
Score = 75.8 bits (38), Expect = 1e-011
Identities = 92/110 (83%)
Strand = Plus / Plus
Query: 1483 atgccctggaacggcgacttcgccctcaagacgctctactacgccgagtacaacaaccgc 1542
||||| ||| ||||||||| ||| |||| ||||||| ||||||||||||||||||| |
Sbjct: 444 atgccgtgggacggcgactacgcgctcagcacgctcttctacgccgagtacaacaactcc 503
Query: 1543 gggcccggcgccggcaccagcaagagggtcaactggcccggcttccacgt 1592
|| |||||||| | |||||||| |||||| ||||| |||||||||||
Sbjct: 504 ggccccggcgcggacaccagcaggagggtggcatggccgggcttccacgt 553
Score = 65.9 bits (33), Expect = 1e-008
Identities = 111/137 (81%)
Strand = Plus / Plus
Query: 1109 cgttctacaactgccggttcgacgcgttccaggacacgctgtacgtgcacgcgcggcggc 1168
|||||||| | ||| | ||||| |||| |||||||||||||||| |||| | | ||||
Sbjct: 67 cgttctaccagtgcagcttcgaggcgtaccaggacacgctgtacacgcactccctccggc 126
Query: 1169 agttcttccgcaactgcgtggtctccggcaccatcgacttcatcttcggcaactcggcgg 1228
|||||| |||| ||||| |||| ||||||| | |||| | | ||||||||| ||||||
Sbjct: 127 agttctaccgcggctgcgacgtctacggcaccgtggactacgtgttcggcaacgcggcgg 186
Query: 1229 cggtgttccagaactgc 1245
|||||||||| |||||
Sbjct: 187 tggtgttccaggactgc 203
>gb|CW355046.1|CW355046 fsbb001f019i07k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f019i07, DNA
sequence
Length = 732
Score = 75.8 bits (38), Expect = 1e-011
Identities = 92/110 (83%)
Strand = Plus / Minus
Query: 1483 atgccctggaacggcgacttcgccctcaagacgctctactacgccgagtacaacaaccgc 1542
||||| ||| ||||||||| ||| |||| ||||||| ||||||||||||||||||| |
Sbjct: 601 atgccgtgggacggcgactacgcgctcagcacgctcttctacgccgagtacaacaactcc 542
Query: 1543 gggcccggcgccggcaccagcaagagggtcaactggcccggcttccacgt 1592
|| |||||||| | |||||||| |||||| ||||| |||||||||||
Sbjct: 541 ggccccggcgcggacaccagcaggagggtggcatggccgggcttccacgt 492
>gb|BE361683.1|BE361683 DG1_81_F09.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 592
Score = 75.8 bits (38), Expect = 1e-011
Identities = 92/110 (83%)
Strand = Plus / Plus
Query: 1483 atgccctggaacggcgacttcgccctcaagacgctctactacgccgagtacaacaaccgc 1542
||||| ||| ||||||||| ||| |||| ||||||| ||||||||||||||||||| |
Sbjct: 144 atgccgtgggacggcgactacgcgctcagcacgctcttctacgccgagtacaacaactcc 203
Query: 1543 gggcccggcgccggcaccagcaagagggtcaactggcccggcttccacgt 1592
|| |||||||| | |||||||| |||||| ||||| |||||||||||
Sbjct: 204 ggccccggcgcggacaccagcaggagggtggcatggccgggcttccacgt 253
>gb|CN138851.1|CN138851 OX1_14_H09.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_14_H09_A002 3', mRNA sequence
Length = 491
Score = 75.8 bits (38), Expect = 1e-011
Identities = 59/66 (89%)
Strand = Plus / Plus
Query: 1498 gacttcgccctcaagacgctctactacgccgagtacaacaaccgcgggcccggcgccggc 1557
|||||||| ||| | |||||||| |||||||||||||||||| ||||||| ||||||| |
Sbjct: 244 gacttcgcgctcgacacgctctagtacgccgagtacaacaacagcgggccgggcgccgac 303
Query: 1558 accagc 1563
||||||
Sbjct: 304 accagc 309
>gb|CX606104.1|CX606104 ANR1_1_D12.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_1_D12_A002 3', mRNA sequence
Length = 615
Score = 75.8 bits (38), Expect = 1e-011
Identities = 59/66 (89%)
Strand = Plus / Plus
Query: 1498 gacttcgccctcaagacgctctactacgccgagtacaacaaccgcgggcccggcgccggc 1557
|||||||| ||| | |||||||| |||||||||||||||||| ||||||| ||||||| |
Sbjct: 142 gacttcgcgctcgacacgctctattacgccgagtacaacaacagcgggccgggcgccgac 201
Query: 1558 accagc 1563
||||||
Sbjct: 202 accagc 207
>gb|BF421136.1|BF421136 FM1_6_H03.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum propinquum
cDNA, mRNA sequence
Length = 399
Score = 73.8 bits (37), Expect = 5e-011
Identities = 55/61 (90%)
Strand = Plus / Plus
Query: 1500 cttcgccctcaagacgctctactacgccgagtacaacaaccgcgggcccggcgccggcac 1559
|||||| ||| | |||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct: 14 cttcgcgctcgacacgctctactacgccgagtacatgaaccgcgggcccggcgccgacac 73
Query: 1560 c 1560
|
Sbjct: 74 c 74
>gb|CW374999.1|CW374999 fsbb001f052c13f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f052c13, DNA
sequence
Length = 660
Score = 71.9 bits (36), Expect = 2e-010
Identities = 54/60 (90%)
Strand = Plus / Minus
Query: 1036 atggggttccacaacacggccggcgcggagcggcaccaggcggtggcgctccgggtgcag 1095
||||| ||||| |||||||||||||||||| |||||||||||||||||| | |||||||
Sbjct: 162 atgggtttccagaacacggccggcgcggagaagcaccaggcggtggcgctgctggtgcag 103
Score = 42.1 bits (21), Expect = 0.19
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 1134 gttccaggacacgctgtacgtgcac 1158
|||||||||||||||||||| ||||
Sbjct: 64 gttccaggacacgctgtacgcgcac 40
>gb|CW064932.1|CW064932 104_311_10522850_114_30122 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10522850, DNA
sequence
Length = 349
Score = 69.9 bits (35), Expect = 9e-010
Identities = 86/103 (83%)
Strand = Plus / Minus
Query: 1137 ccaggacacgctgtacgtgcacgcgcggcggcagttcttccgcaactgcgtggtctccgg 1196
|||||||||||| | || ||| ||| |||||||||| ||||| |||||| |||||||
Sbjct: 126 ccaggacacgctcttcgcgcaggcgtaccggcagttctaccgcagctgcgtcatctccgg 67
Query: 1197 caccatcgacttcatcttcggcaactcggcggcggtgttccag 1239
|||| | ||||||||| | ||| || |||||||||||||||||
Sbjct: 66 caccgtggacttcatcatgggcgacgcggcggcggtgttccag 24
>gb|CW075985.1|CW075985 104_364_10810037_114_31802_101 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10810037, DNA
sequence
Length = 657
Score = 69.9 bits (35), Expect = 9e-010
Identities = 47/51 (92%)
Strand = Plus / Plus
Query: 1483 atgccctggaacggcgacttcgccctcaagacgctctactacgccgagtac 1533
||||| |||||||| |||||||| ||||||||||||||||||| |||||||
Sbjct: 71 atgccgtggaacggggacttcgcgctcaagacgctctactacggcgagtac 121
>gb|CW084629.1|CW084629 104_427_10945909_116_32511_055 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10945909, DNA
sequence
Length = 643
Score = 69.9 bits (35), Expect = 9e-010
Identities = 47/51 (92%)
Strand = Plus / Minus
Query: 1483 atgccctggaacggcgacttcgccctcaagacgctctactacgccgagtac 1533
||||| |||||||| |||||||| ||||||||||||||||||| |||||||
Sbjct: 501 atgccgtggaacggggacttcgcgctcaagacgctctactacggcgagtac 451
>gb|CW089034.1|CW089034 104_434_10948469_114_32601_027 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10948469, DNA
sequence
Length = 620
Score = 69.9 bits (35), Expect = 9e-010
Identities = 86/103 (83%)
Strand = Plus / Plus
Query: 1137 ccaggacacgctgtacgtgcacgcgcggcggcagttcttccgcaactgcgtggtctccgg 1196
|||||||||||| | || ||| ||| |||||||||| ||||| |||||| |||||||
Sbjct: 55 ccaggacacgctcttcgcgcaggcgtaccggcagttctaccgcagctgcgtcatctccgg 114
Query: 1197 caccatcgacttcatcttcggcaactcggcggcggtgttccag 1239
|||| | ||||||||| | ||| || |||||||||||||||||
Sbjct: 115 caccgtggacttcatcatgggcgacgcggcggcggtgttccag 157
>gb|CW328078.1|CW328078 104_824_11479103_148_35988_096 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11479103, DNA
sequence
Length = 666
Score = 69.9 bits (35), Expect = 9e-010
Identities = 47/51 (92%)
Strand = Plus / Plus
Query: 1201 atcgacttcatcttcggcaactcggcggcggtgttccagaactgcctcatc 1251
||||||||||||||||||||| || || ||||||||||||||||||||||
Sbjct: 1 atcgacttcatcttcggcaacgcgcaggtggtgttccagaactgcctcatc 51
Score = 42.1 bits (21), Expect = 0.19
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 1266 catggacaaccagcagaactcggtgacggcgca 1298
||||||||||||||||||| |||||||||||
Sbjct: 66 catggacaaccagcagaacatcgtgacggcgca 98
>gb|CW340402.1|CW340402 104_841_11485781_116_36146_023 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11485781, DNA
sequence
Length = 672
Score = 69.9 bits (35), Expect = 9e-010
Identities = 65/75 (86%)
Strand = Plus / Minus
Query: 1165 cggcagttcttccgcaactgcgtggtctccggcaccatcgacttcatcttcggcaactcg 1224
|||||||||| ||||| |||||| ||||||||||| | ||||||||| | ||| || ||
Sbjct: 569 cggcagttctaccgcagctgcgtcatctccggcaccgtggacttcatcatgggcgacgcg 510
Query: 1225 gcggcggtgttccag 1239
|||||||||||||||
Sbjct: 509 gcggcggtgttccag 495
>gb|CW340403.1|CW340403 104_841_11485781_148_36147_023 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11485781, DNA
sequence
Length = 675
Score = 69.9 bits (35), Expect = 9e-010
Identities = 86/103 (83%)
Strand = Plus / Plus
Query: 1137 ccaggacacgctgtacgtgcacgcgcggcggcagttcttccgcaactgcgtggtctccgg 1196
|||||||||||| | || ||| ||| |||||||||| ||||| |||||| |||||||
Sbjct: 168 ccaggacacgctcttcgcgcaggcgtaccggcagttctaccgcagctgcgtcatctccgg 227
Query: 1197 caccatcgacttcatcttcggcaactcggcggcggtgttccag 1239
|||| | ||||||||| | ||| || |||||||||||||||||
Sbjct: 228 caccgtggacttcatcatgggcgacgcggcggcggtgttccag 270
>gb|CW350958.1|CW350958 fsbb001f012i07k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f012i07, DNA
sequence
Length = 555
Score = 69.9 bits (35), Expect = 9e-010
Identities = 47/51 (92%)
Strand = Plus / Minus
Query: 1483 atgccctggaacggcgacttcgccctcaagacgctctactacgccgagtac 1533
||||| |||||||| |||||||| ||||||||||||||||||| |||||||
Sbjct: 223 atgccgtggaacggggacttcgcgctcaagacgctctactacggcgagtac 173
Score = 48.1 bits (24), Expect = 0.003
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 1195 ggcaccatcgacttcatcttcggcaactcggcggcggtgttcca 1238
|||||| |||||||| ||||||||||||| ||| ||||| ||||
Sbjct: 535 ggcaccgtcgacttcgtcttcggcaactccgcgacggtgctcca 492
>gb|CW481932.1|CW481932 fsbb001f241m07f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f241m07, DNA
sequence
Length = 408
Score = 69.9 bits (35), Expect = 9e-010
Identities = 47/51 (92%)
Strand = Plus / Plus
Query: 1483 atgccctggaacggcgacttcgccctcaagacgctctactacgccgagtac 1533
||||| |||||||| |||||||| ||||||||||||||||||| |||||||
Sbjct: 324 atgccgtggaacggggacttcgcgctcaagacgctctactacggcgagtac 374
Score = 48.1 bits (24), Expect = 0.003
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 1195 ggcaccatcgacttcatcttcggcaactcggcggcggtgttcca 1238
|||||| |||||||| ||||||||||||| ||| ||||| ||||
Sbjct: 12 ggcaccgtcgacttcgtcttcggcaactccgcgacggtgctcca 55
>gb|BG355811.1|BG355811 EM1_17_A06.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA sequence
Length = 369
Score = 69.9 bits (35), Expect = 9e-010
Identities = 47/51 (92%)
Strand = Plus / Plus
Query: 1483 atgccctggaacggcgacttcgccctcaagacgctctactacgccgagtac 1533
||||| |||||||| |||||||| ||||||||||||||||||| |||||||
Sbjct: 248 atgccgtggaacggggacttcgcgctcaagacgctctactacggcgagtac 298
>gb|CD205907.1|CD205907 HS1_19_G06.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA clone
HS1_19_G06_A012 3', mRNA sequence
Length = 626
Score = 69.9 bits (35), Expect = 9e-010
Identities = 98/119 (82%)
Strand = Plus / Plus
Query: 1068 gcaccaggcggtggcgctccgggtgcagggggacctcgcggcgttctacaactgccggtt 1127
||||||||||||||||||||| ||| | |||||| ||||||||||| |||| | ||
Sbjct: 357 gcaccaggcggtggcgctccgcgtgggcgcggacctgtcggcgttctaccgctgcagctt 416
Query: 1128 cgacgcgttccaggacacgctgtacgtgcacgcgcggcggcagttcttccgcaactgcg 1186
|| | | |||||||||||||||||||||| | | ||||||||||||||| ||||||
Sbjct: 417 cgtgggctaccaggacacgctgtacgtgcactccctccggcagttcttccgcgactgcg 475
>gb|CD203831.1|CD203831 HS1_2_G09.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA clone
HS1_2_G09_A012 3', mRNA sequence
Length = 565
Score = 67.9 bits (34), Expect = 3e-009
Identities = 58/66 (87%)
Strand = Plus / Plus
Query: 1498 gacttcgccctcaagacgctctactacgccgagtacaacaaccgcgggcccggcgccggc 1557
|||||||| ||| | ||||| ||||||||||||||||||||| |||| || ||||||| |
Sbjct: 93 gacttcgcgctcgacacgctttactacgccgagtacaacaacagcggcccgggcgccgac 152
Query: 1558 accagc 1563
||||||
Sbjct: 153 accagc 158
>gb|CW369334.1|CW369334 fsbb001f043l06f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f043l06, DNA
sequence
Length = 712
Score = 65.9 bits (33), Expect = 1e-008
Identities = 111/137 (81%)
Strand = Plus / Plus
Query: 1109 cgttctacaactgccggttcgacgcgttccaggacacgctgtacgtgcacgcgcggcggc 1168
|||||||| | ||| | ||||| |||| |||||||||||||||| |||| | | ||||
Sbjct: 290 cgttctaccagtgcagcttcgaggcgtaccaggacacgctgtacacgcactccctccggc 349
Query: 1169 agttcttccgcaactgcgtggtctccggcaccatcgacttcatcttcggcaactcggcgg 1228
|||||| |||| ||||| |||| ||||||| | |||| | | ||||||||| ||||||
Sbjct: 350 agttctaccgcggctgcgacgtctacggcaccgtggactacgtgttcggcaacgcggcgg 409
Query: 1229 cggtgttccagaactgc 1245
|||||||||| |||||
Sbjct: 410 tggtgttccaggactgc 426
>gb|CW143842.1|CW143842 104_535_11137628_148_34959_068 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11137628, DNA
sequence
Length = 570
Score = 63.9 bits (32), Expect = 5e-008
Identities = 56/64 (87%)
Strand = Plus / Minus
Query: 1069 caccaggcggtggcgctccgggtgcagggggacctcgcggcgttctacaactgccggttc 1128
||||||||||||||||| ||||||||| | ||| | ||||||||||| | |||||||||
Sbjct: 71 caccaggcggtggcgctgcgggtgcagagcgacatgtcggcgttctacgagtgccggttc 12
Query: 1129 gacg 1132
||||
Sbjct: 11 gacg 8
Score = 42.1 bits (21), Expect = 0.19
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 843 gtacgtcatctacgtgaaggccggc 867
||||||||| |||||||||||||||
Sbjct: 297 gtacgtcatgtacgtgaaggccggc 273
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 624,319
Number of Sequences: 832831
Number of extensions: 624319
Number of successful extensions: 174310
Number of sequences better than 0.5: 126
Number of HSP's better than 0.5 without gapping: 124
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 173867
Number of HSP's gapped (non-prelim): 420
length of query: 1967
length of database: 491,359,669
effective HSP length: 20
effective length of query: 1947
effective length of database: 474,703,049
effective search space: 924246836403
effective search space used: 924246836403
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)