BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3995289.2.1
(559 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BE362203.1|BE362203 DG1_85_C03.b1_A002 Dark Grown 1 (DG1... 448 e-124
gb|BE360355.1|BE360355 DG1_63_A09.b1_A002 Dark Grown 1 (DG1... 272 3e-071
gb|CW039493.1|CW039493 104_272_10505533_115_30390 Sorghum m... 151 8e-035
gb|CW317913.1|CW317913 104_809_11473667_148_35865_034 Sorgh... 141 8e-032
gb|BE125307.1|BE125307 DG1_18_A04.b1_A002 Dark Grown 1 (DG1... 131 8e-029
gb|CW417110.1|CW417110 fsbb001f117p10f0 Sorghum methylation... 105 4e-021
gb|CW417111.1|CW417111 fsbb001f117p10k0 Sorghum methylation... 105 4e-021
gb|AW923084.1|AW923084 DG1_50_B12.b1_A002 Dark Grown 1 (DG1... 98 1e-018
gb|CW184632.1|CW184632 104_602_11165636_148_36691_080 Sorgh... 88 1e-015
gb|BF481047.1|BF481047 FM1_15_F10.b1_A003 Floral-Induced Me... 48 9e-004
gb|CW173700.1|CW173700 104_585_11156988_148_36551_040 Sorgh... 42 0.054
gb|CW221900.1|CW221900 104_657_11202092_148_37450_078 Sorgh... 42 0.054
gb|CW224796.1|CW224796 104_662_11204014_116_37206_093 Sorgh... 42 0.054
gb|CW224797.1|CW224797 104_662_11204014_148_37205_093 Sorgh... 42 0.054
gb|CW244160.1|CW244160 104_705_11220442_148_37587_047 Sorgh... 42 0.054
gb|CW305958.1|CW305958 104_791_11466582_148_36272_023 Sorgh... 42 0.054
gb|CW415931.1|CW415931 fsbb001f116e01k0 Sorghum methylation... 42 0.054
gb|CW462793.1|CW462793 fsbb001f211b16f0 Sorghum methylation... 42 0.054
gb|CW477092.1|CW477092 fsbb001f234e06k0 Sorghum methylation... 42 0.054
gb|AW679215.1|AW679215 WS1_23_E02.b1_A002 Water-stressed 1 ... 42 0.054
gb|AW923080.1|AW923080 DG1_49_A11.b1_A002 Dark Grown 1 (DG1... 42 0.054
gb|BE367461.1|BE367461 PI1_8_H10.b1_A002 Pathogen induced 1... 42 0.054
gb|BE596988.1|BE596988 PI1_60_A05.b1_A002 Pathogen induced ... 42 0.054
gb|BF705140.1|BF705140 RHIZ2_1_H07.b1_A003 Rhizome2 (RHIZ2)... 42 0.054
gb|CD207615.1|CD207615 HS1_33_G10.g1_A012 Heat-shocked seed... 42 0.054
gb|CD211045.1|CD211045 HS1_58_C12.g1_A012 Heat-shocked seed... 42 0.054
gb|CD213416.1|CD213416 HS1_40_F08.g1_A012 Heat-shocked seed... 42 0.054
gb|CD221581.1|CD221581 CCC1_55_E03.g1_A007 Callus culture/c... 42 0.054
gb|CF072579.1|CF072579 FE1_3_E04.g1_A002 Iron-deficient see... 42 0.054
gb|CF426976.1|CF426976 PH1_2_H07.g1_A002 Phosphorous-defici... 42 0.054
gb|CF427893.1|CF427893 PH1_11_C03.g1_A002 Phosphorous-defic... 42 0.054
gb|CF432265.1|CF432265 NIT1_15_H04.g1_A002 Nitrogen-deficie... 42 0.054
gb|CF487648.1|CF487648 POL1_45_C07.b1_A002 Pollen Sorghum b... 42 0.054
gb|CN126215.1|CN126215 RHOH1_15_G06.g1_A002 Acid- and alkal... 42 0.054
gb|CN144023.1|CN144023 WOUND1_19_F02.g1_A002 Wounded leaves... 42 0.054
gb|CX612479.1|CX612479 GABR1_2_E01.g1_A002 GA- or brassinol... 42 0.054
gb|CX612994.1|CX612994 GABR1_5_D06.g1_A002 GA- or brassinol... 42 0.054
gb|CX622227.1|CX622227 GABR1_62_E12.g2_A002 GA- or brassino... 42 0.054
gb|BZ331238.1|BZ331238 hw07c04.g1 WGS-SbicolorF (JM107 adap... 40 0.21
gb|CL152276.1|CL152276 104_335_10779847_116_31364_247 Sorgh... 40 0.21
gb|CL153508.1|CL153508 104_338_10780762_116_31370_010 Sorgh... 40 0.21
gb|CL157931.1|CL157931 104_346_10803180_114_31375_156 Sorgh... 40 0.21
gb|CL165872.1|CL165872 104_361_10808964_116_31821_180 Sorgh... 40 0.21
gb|CL179370.1|CL179370 104_388_10895262_148_31909_174 Sorgh... 40 0.21
gb|CL182302.1|CL182302 104_393_10897334_148_31921_326 Sorgh... 40 0.21
gb|CL185284.1|CL185284 104_399_10899424_114_32391_060 Sorgh... 40 0.21
gb|CL191164.1|CL191164 104_409_10906602_114_32491_065 Sorgh... 40 0.21
gb|CW028040.1|CW028040 104_254_10498854_114_30395 Sorghum m... 40 0.21
gb|CW036052.1|CW036052 104_267_10503538_114_30374 Sorghum m... 40 0.21
gb|CW036053.1|CW036053 104_267_10503538_115_30375 Sorghum m... 40 0.21
gb|CW050501.1|CW050501 104_290_10514693_115_30205 Sorghum m... 40 0.21
gb|CW057911.1|CW057911 104_300_10518467_5_30082 Sorghum met... 40 0.21
gb|CW061495.1|CW061495 104_305_10520430_115_30153 Sorghum m... 40 0.21
gb|CW072414.1|CW072414 104_325_10592254_116_30540 Sorghum m... 40 0.21
gb|CW133606.1|CW133606 104_517_11116854_148_34813_023 Sorgh... 40 0.21
gb|CW179064.1|CW179064 104_593_11159902_116_36626_095 Sorgh... 40 0.21
gb|CW210347.1|CW210347 104_640_11189747_148_36998_036 Sorgh... 40 0.21
gb|CW215958.1|CW215958 104_648_11194851_148_37114_006 Sorgh... 40 0.21
gb|CW251564.1|CW251564 104_714_11224003_116_35066_076 Sorgh... 40 0.21
gb|CW258991.1|CW258991 104_725_11228182_148_35179_093 Sorgh... 40 0.21
gb|CW297519.1|CW297519 104_779_11462084_116_35637_068 Sorgh... 40 0.21
gb|CW309959.1|CW309959 104_799_11469465_116_37434_047 Sorgh... 40 0.21
gb|CW309960.1|CW309960 104_799_11469465_148_37433_047 Sorgh... 40 0.21
gb|CW317476.1|CW317476 104_809_11473433_116_35861_075 Sorgh... 40 0.21
gb|CW332570.1|CW332570 104_830_11481488_116_36041_028 Sorgh... 40 0.21
gb|CW364327.1|CW364327 fsbb001f036f04k0 Sorghum methylation... 40 0.21
gb|CW377509.1|CW377509 fsbb001f055n17k0 Sorghum methylation... 40 0.21
gb|CW389194.1|CW389194 fsbb001f074e14f0 Sorghum methylation... 40 0.21
gb|CW413860.1|CW413860 fsbb001f113d17f0 Sorghum methylation... 40 0.21
gb|CW440480.1|CW440480 fsbb001f159c17f0 Sorghum methylation... 40 0.21
gb|CW451430.1|CW451430 fsbb001f191i02f0 Sorghum methylation... 40 0.21
gb|CW455202.1|CW455202 fsbb001f199p16k0 Sorghum methylation... 40 0.21
gb|CW462640.1|CW462640 fsbb001f210o03f0 Sorghum methylation... 40 0.21
gb|CW469931.1|CW469931 fsbb001f222o03f0 Sorghum methylation... 40 0.21
gb|CW485480.1|CW485480 fsbb001f248e03k0 Sorghum methylation... 40 0.21
gb|CW499253.1|CW499253 fsbb001f293o16k0 Sorghum methylation... 40 0.21
gb|AW676841.1|AW676841 DG1_1_C01.b1_A002 Dark Grown 1 (DG1)... 40 0.21
gb|BE594462.1|BE594462 PI1_33_F08.b1_A002 Pathogen induced ... 40 0.21
gb|BE596928.1|BE596928 PI1_60_C06.g1_A002 Pathogen induced ... 40 0.21
gb|BG052137.1|BG052137 RHIZ2_6_F03.b1_A003 Rhizome2 (RHIZ2)... 40 0.21
gb|BG357978.1|BG357978 OV2_32_F08.b1_A002 Ovary 2 (OV2) Sor... 40 0.21
gb|BG412806.1|BG412806 OV2_35_B02.b1_A002 Ovary 2 (OV2) Sor... 40 0.21
gb|BI141218.1|BI141218 IP1_44_G03.b1_A002 Immature pannicle... 40 0.21
gb|CB925780.1|CB925780 ABA1_23_D04.g1_A012 Abscisic acid-tr... 40 0.21
gb|CD227216.1|CD227216 CCC1_4_G06.g1_A007 Callus culture/ce... 40 0.21
gb|CD235037.1|CD235037 SS1_19_E09.g1_A012 Salt-stressed see... 40 0.21
gb|CD431855.1|CD431855 ETH1_11_C12.g1_A002 Ethylene-treated... 40 0.21
gb|CD464120.1|CD464120 ETH1_48_H02.g1_A002 Ethylene-treated... 40 0.21
gb|CF428969.1|CF428969 PH1_18_B09.g1_A002 Phosphorous-defic... 40 0.21
gb|CF433490.1|CF433490 NIT1_27_B01.g1_A002 Nitrogen-deficie... 40 0.21
gb|CF482690.1|CF482690 POL1_8_B10.g1_A002 Pollen Sorghum bi... 40 0.21
gb|CF484497.1|CF484497 POL1_25_E04.g1_A002 Pollen Sorghum b... 40 0.21
gb|CF484641.1|CF484641 POL1_26_C11.g1_A002 Pollen Sorghum b... 40 0.21
gb|CF484847.1|CF484847 POL1_27_G11.g1_A002 Pollen Sorghum b... 40 0.21
gb|CF487113.1|CF487113 POL1_41_G10.g1_A002 Pollen Sorghum b... 40 0.21
gb|CF487728.1|CF487728 POL1_45_C07.g1_A002 Pollen Sorghum b... 40 0.21
gb|CF488248.1|CF488248 POL1_48_D11.g1_A002 Pollen Sorghum b... 40 0.21
gb|CN132480.1|CN132480 OX1_6_A03.g1_A002 Oxidatively-stress... 40 0.21
gb|CN133155.1|CN133155 OX1_10_B03.g1_A002 Oxidatively-stres... 40 0.21
gb|CN151802.1|CN151802 WOUND1_77_F02.g1_A002 Wounded leaves... 40 0.21
gb|CX611963.1|CX611963 ANR1_27_E11.g1_A002 Anaerobic roots ... 40 0.21
gb|CX616428.1|CX616428 GABR1_27_G10.g1_A002 GA- or brassino... 40 0.21
>gb|BE362203.1|BE362203 DG1_85_C03.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 553
Score = 448 bits (226), Expect = e-124
Identities = 288/309 (93%)
Strand = Plus / Plus
Query: 64 gacaggccgcagctgaccctcaacttcgtcgtccagtttttctttctcgcgctctgcggc 123
|||||||||||||||||||||||||||||| ||||||| ||| | |||||||||||||||
Sbjct: 230 gacaggccgcagctgaccctcaacttcgtcatccagttcttcctcctcgcgctctgcggc 289
Query: 124 atcacggcgaaccaagggttttacctcctgggcctggacaacacgtcgccgacgttcgcg 183
|||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||
Sbjct: 290 atcacggcgaaccaagggttctacctgctggggctggacaacacgtcgccgacgttcgcg 349
Query: 184 tccgccatccagaactcggtcccggccatcaccttcgccatggccgcggcgctgcggatc 243
|| || |||||||||||||| ||||| ||||||||||||||||| |||||||||||||||
Sbjct: 350 tcggcgatccagaactcggtgccggcaatcaccttcgccatggcggcggcgctgcggatc 409
Query: 244 gagaaggtccggctggaccgccgcgacggcgtagccaaggtggcgggcacgctggcgtgc 303
|||||||||||||||||||| ||||||||||| ||||||||||| || ||||||||||||
Sbjct: 410 gagaaggtccggctggaccggcgcgacggcgtggccaaggtggccgggacgctggcgtgc 469
Query: 304 gtggcggnggcatccgtcatcacgctctacaagggccccaccatcttcggtcccggcggc 363
||||||| || |||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct: 470 gtggcgggtgcgtccgtcatcacgctctacaagggccccaccatcttcggccccagcggc 529
Query: 364 ggcggcggc 372
|||||||||
Sbjct: 530 ggcggcggc 538
>gb|BE360355.1|BE360355 DG1_63_A09.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 517
Score = 272 bits (137), Expect = 3e-071
Identities = 173/185 (93%)
Strand = Plus / Plus
Query: 64 gacaggccgcagctgaccctcaacttcgtcgtccagtttttctttctcgcgctctgcggc 123
|||||||||||||||||||||||||||||| ||||||| ||| | |||||||||||||||
Sbjct: 333 gacaggccgcagctgaccctcaacttcgtcatccagttcttcctcctcgcgctctgcggc 392
Query: 124 atcacggcgaaccaagggttttacctcctgggcctggacaacacgtcgccgacgttcgcg 183
|||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||
Sbjct: 393 atcacggcgaaccaagggttctacctgctggggctggacaacacgtcgccgacgttcgcg 452
Query: 184 tccgccatccagaactcggtcccggccatcaccttcgccatggccgcggcgctgcggatc 243
|| || |||||||||||||| ||||| ||||||||||||||||| |||||||||||||||
Sbjct: 453 tcggcgatccagaactcggtgccggcaatcaccttcgccatggcggcggcgctgcggatc 512
Query: 244 gagaa 248
|||||
Sbjct: 513 gagaa 517
>gb|CW039493.1|CW039493 104_272_10505533_115_30390 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10505533, DNA
sequence
Length = 698
Score = 151 bits (76), Expect = 8e-035
Identities = 133/152 (87%)
Strand = Plus / Minus
Query: 95 tccagtttttctttctcgcgctctgcggcatcacggcgaaccaagggttttacctcctgg 154
||||||| ||| | |||||||| ||||| ||||| || ||||| || || ||||| ||||
Sbjct: 207 tccagttcttcctcctcgcgctgtgcgggatcaccgccaaccagggcttctacctgctgg 148
Query: 155 gcctggacaacacgtcgccgacgttcgcgtccgccatccagaactcggtcccggccatca 214
| || |||||||||||||| ||||||||||| || |||||||||||||||||||||||||
Sbjct: 147 ggctcgacaacacgtcgcccacgttcgcgtcggcgatccagaactcggtcccggccatca 88
Query: 215 ccttcgccatggccgcggcgctgcggatcgag 246
|||||||||||||||| |||||| | ||||||
Sbjct: 87 ccttcgccatggccgccgcgctgggtatcgag 56
>gb|CW317913.1|CW317913 104_809_11473667_148_35865_034 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11473667, DNA
sequence
Length = 532
Score = 141 bits (71), Expect = 8e-032
Identities = 124/142 (87%)
Strand = Plus / Minus
Query: 405 cggcgacaagaactggacgctgggntgcgtgtacctgatcgggcactgcctgtcgtggtc 464
|||| |||||| |||| ||||||| ||||| ||||| || || |||||| ||||||||||
Sbjct: 261 cggcaacaagagctgggcgctggggtgcgtctacctcatgggccactgcttgtcgtggtc 202
Query: 465 cggctggctggtgctgcaggctcccgtgctgaagaagtacccggcacggctggccgtcac 524
||||||||||||||||||||| |||||||| ||| ||||| || || ||| |||||||
Sbjct: 201 cggctggctggtgctgcaggcgcccgtgctcaagcgctacccagcgcgcctgtccgtcac 142
Query: 525 ctcctacacctgcttcttcggc 546
||||||||||||||||||||||
Sbjct: 141 ctcctacacctgcttcttcggc 120
Score = 123 bits (62), Expect = 2e-026
Identities = 172/209 (82%)
Strand = Plus / Minus
Query: 145 tacctcctgggcctggacaacacgtcgccgacgttcgcgtccgccatccagaactcggtc 204
||||| ||||| || |||||||||||||| ||||||||||| || |||||||||||||||
Sbjct: 521 tacctgctggggctcgacaacacgtcgcccacgttcgcgtcggcgatccagaactcggtc 462
Query: 205 ccggccatcaccttcgccatggccgcggcgctgcggatcgagaaggtccggctggaccgc 264
|||||||||||| ||||||||||||| |||||| | |||||| ||||| || |||
Sbjct: 461 ccggccatcaccctcgccatggccgccgcgctgggtatcgagcgtgtccgcctccgacgc 402
Query: 265 cgcgacggcgtagccaaggtggcgggcacgctggcgtgcgtggcggnggcatccgtcatc 324
|| || || | || ||||||||||||||| || ||||| || | || ||||||||
Sbjct: 401 cgggatggactcgctaaggtggcgggcacgatgctctgcgtcgccggcgccaccgtcatc 342
Query: 325 acgctctacaagggccccaccatcttcgg 353
||||||| |||||||||| || |||||||
Sbjct: 341 acgctcttcaagggccccgccgtcttcgg 313
>gb|BE125307.1|BE125307 DG1_18_A04.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 100
Score = 131 bits (66), Expect = 8e-029
Identities = 91/100 (91%)
Strand = Plus / Plus
Query: 267 cgacggcgtagccaaggtggcgggcacgctggcgtgcgtggcggnggcatccgtcatcac 326
||||||||| ||||||||||| || ||||||||||||||||||| || | |||||||||
Sbjct: 1 cgacggcgtggccaaggtggccgggacgctggcgtgcgtggcgggtgcgtncgtcatcac 60
Query: 327 gctctacaagggccccaccatcttcggtcccggcggcggc 366
||||||||||||||||||||||||||| ||| ||||||||
Sbjct: 61 gctctacaagggccccaccatcttcggccccagcggcggc 100
>gb|CW417110.1|CW417110 fsbb001f117p10f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f117p10, DNA
sequence
Length = 312
Score = 105 bits (53), Expect = 4e-021
Identities = 68/73 (93%)
Strand = Plus / Minus
Query: 50 cctgctgcaggaaagacaggccgcagctgaccctcaacttcgtcgtccagtttttctttc 109
||||||||||||| |||||||||||||||||||||||||||||| ||||||| ||| | |
Sbjct: 253 cctgctgcaggaaggacaggccgcagctgaccctcaacttcgtcatccagttcttcctcc 194
Query: 110 tcgcgctctgcgg 122
|||||||||||||
Sbjct: 193 tcgcgctctgcgg 181
Score = 103 bits (52), Expect = 2e-020
Identities = 61/64 (95%)
Strand = Plus / Minus
Query: 122 gcatcacggcgaaccaagggttttacctcctgggcctggacaacacgtcgccgacgttcg 181
|||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||
Sbjct: 67 gcatcacggcgaaccaagggttctacctgctggggctggacaacacgtcgccgacgttcg 8
Query: 182 cgtc 185
||||
Sbjct: 7 cgtc 4
>gb|CW417111.1|CW417111 fsbb001f117p10k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f117p10, DNA
sequence
Length = 820
Score = 105 bits (53), Expect = 4e-021
Identities = 68/73 (93%)
Strand = Plus / Plus
Query: 50 cctgctgcaggaaagacaggccgcagctgaccctcaacttcgtcgtccagtttttctttc 109
||||||||||||| |||||||||||||||||||||||||||||| ||||||| ||| | |
Sbjct: 676 cctgctgcaggaaggacaggccgcagctgaccctcaacttcgtcatccagttcttcctcc 735
Query: 110 tcgcgctctgcgg 122
|||||||||||||
Sbjct: 736 tcgcgctctgcgg 748
>gb|AW923084.1|AW923084 DG1_50_B12.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 443
Score = 97.6 bits (49), Expect = 1e-018
Identities = 61/65 (93%)
Strand = Plus / Plus
Query: 64 gacaggccgcagctgaccctcaacttcgtcgtccagtttttctttctcgcgctctgcggc 123
|||||||||||||||||||||||||||||| ||||||| ||| | |||||||||||||||
Sbjct: 379 gacaggccgcagctgaccctcaacttcgtcatccagttcttcctcctcgcgctctgcggc 438
Query: 124 atcac 128
|||||
Sbjct: 439 atcac 443
>gb|CW184632.1|CW184632 104_602_11165636_148_36691_080 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11165636, DNA
sequence
Length = 725
Score = 87.7 bits (44), Expect = 1e-015
Identities = 50/52 (96%)
Strand = Plus / Minus
Query: 50 cctgctgcaggaaagacaggccgcagctgaccctcaacttcgtcgtccagtt 101
||||||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct: 57 cctgctgcaggaaggacaggccgcagctgaccctcaacttcgtcatccagtt 6
>gb|BF481047.1|BF481047 FM1_15_F10.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 537
Score = 48.1 bits (24), Expect = 9e-004
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 349 ttcggtcccggcggcggcggcggc 372
||||||||||||||||||||||||
Sbjct: 422 ttcggtcccggcggcggcggcggc 445
>gb|CW173700.1|CW173700 104_585_11156988_148_36551_040 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11156988, DNA
sequence
Length = 653
Score = 42.1 bits (21), Expect = 0.054
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 357 cggcggcggcggcggcctcgagctg 381
|||||||||||||||||| ||||||
Sbjct: 512 cggcggcggcggcggccttgagctg 536
>gb|CW221900.1|CW221900 104_657_11202092_148_37450_078 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11202092, DNA
sequence
Length = 615
Score = 42.1 bits (21), Expect = 0.054
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 352 ggtcccggcggcggcggcggc 372
|||||||||||||||||||||
Sbjct: 107 ggtcccggcggcggcggcggc 87
>gb|CW224796.1|CW224796 104_662_11204014_116_37206_093 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11204014, DNA
sequence
Length = 361
Score = 42.1 bits (21), Expect = 0.054
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 358 ggcggcggcggcggcctcgag 378
|||||||||||||||||||||
Sbjct: 154 ggcggcggcggcggcctcgag 174
>gb|CW224797.1|CW224797 104_662_11204014_148_37205_093 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11204014, DNA
sequence
Length = 689
Score = 42.1 bits (21), Expect = 0.054
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 358 ggcggcggcggcggcctcgag 378
|||||||||||||||||||||
Sbjct: 433 ggcggcggcggcggcctcgag 453
>gb|CW244160.1|CW244160 104_705_11220442_148_37587_047 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11220442, DNA
sequence
Length = 631
Score = 42.1 bits (21), Expect = 0.054
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 358 ggcggcggcggcggcctcgag 378
|||||||||||||||||||||
Sbjct: 407 ggcggcggcggcggcctcgag 427
>gb|CW305958.1|CW305958 104_791_11466582_148_36272_023 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11466582, DNA
sequence
Length = 524
Score = 42.1 bits (21), Expect = 0.054
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 356 ccggcggcggcggcggcctcg 376
|||||||||||||||||||||
Sbjct: 486 ccggcggcggcggcggcctcg 466
>gb|CW415931.1|CW415931 fsbb001f116e01k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f116e01, DNA
sequence
Length = 403
Score = 42.1 bits (21), Expect = 0.054
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 352 ggtcccggcggcggcggcggc 372
|||||||||||||||||||||
Sbjct: 168 ggtcccggcggcggcggcggc 188
>gb|CW462793.1|CW462793 fsbb001f211b16f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f211b16, DNA
sequence
Length = 380
Score = 42.1 bits (21), Expect = 0.054
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 356 ccggcggcggcggcggcctcg 376
|||||||||||||||||||||
Sbjct: 377 ccggcggcggcggcggcctcg 357
>gb|CW477092.1|CW477092 fsbb001f234e06k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f234e06, DNA
sequence
Length = 758
Score = 42.1 bits (21), Expect = 0.054
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 352 ggtcccggcggcggcggcggc 372
|||||||||||||||||||||
Sbjct: 353 ggtcccggcggcggcggcggc 333
>gb|AW679215.1|AW679215 WS1_23_E02.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 298
Score = 42.1 bits (21), Expect = 0.054
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 357 cggcggcggcggcggcctcgagctg 381
|||||||||||||||||| ||||||
Sbjct: 176 cggcggcggcggcggccttgagctg 152
>gb|AW923080.1|AW923080 DG1_49_A11.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 469
Score = 42.1 bits (21), Expect = 0.054
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 352 ggtcccggcggcggcggcggc 372
|||||||||||||||||||||
Sbjct: 404 ggtcccggcggcggcggcggc 424
>gb|BE367461.1|BE367461 PI1_8_H10.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 556
Score = 42.1 bits (21), Expect = 0.054
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 357 cggcggcggcggcggcctcgagctg 381
|||||||||||||||||| ||||||
Sbjct: 68 cggcggcggcggcggccttgagctg 44
>gb|BE596988.1|BE596988 PI1_60_A05.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 516
Score = 42.1 bits (21), Expect = 0.054
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 352 ggtcccggcggcggcggcggc 372
|||||||||||||||||||||
Sbjct: 480 ggtcccggcggcggcggcggc 500
>gb|BF705140.1|BF705140 RHIZ2_1_H07.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 454
Score = 42.1 bits (21), Expect = 0.054
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 352 ggtcccggcggcggcggcggc 372
|||||||||||||||||||||
Sbjct: 18 ggtcccggcggcggcggcggc 38
>gb|CD207615.1|CD207615 HS1_33_G10.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_33_G10_A012 5', mRNA sequence
Length = 705
Score = 42.1 bits (21), Expect = 0.054
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 357 cggcggcggcggcggcctcgagctg 381
|||||||||||||||||| ||||||
Sbjct: 181 cggcggcggcggcggccttgagctg 157
>gb|CD211045.1|CD211045 HS1_58_C12.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_58_C12_A012 5', mRNA sequence
Length = 716
Score = 42.1 bits (21), Expect = 0.054
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 352 ggtcccggcggcggcggcggc 372
|||||||||||||||||||||
Sbjct: 635 ggtcccggcggcggcggcggc 655
>gb|CD213416.1|CD213416 HS1_40_F08.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_40_F08_A012 5', mRNA sequence
Length = 647
Score = 42.1 bits (21), Expect = 0.054
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 357 cggcggcggcggcggcctcgagctg 381
|||||||||||||||||| ||||||
Sbjct: 180 cggcggcggcggcggccttgagctg 156
>gb|CD221581.1|CD221581 CCC1_55_E03.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_55_E03_A007 5', mRNA sequence
Length = 666
Score = 42.1 bits (21), Expect = 0.054
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 357 cggcggcggcggcggcctcgagctg 381
|||||||||||||||||| ||||||
Sbjct: 181 cggcggcggcggcggccttgagctg 157
>gb|CF072579.1|CF072579 FE1_3_E04.g1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
clone FE1_3_E04_A002 5', mRNA sequence
Length = 558
Score = 42.1 bits (21), Expect = 0.054
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 357 cggcggcggcggcggcctcgagctg 381
|||||||||||||||||| ||||||
Sbjct: 181 cggcggcggcggcggccttgagctg 157
>gb|CF426976.1|CF426976 PH1_2_H07.g1_A002 Phosphorous-deficient seedlings Sorghum bicolor
cDNA clone PH1_2_H07_A002 5', mRNA sequence
Length = 624
Score = 42.1 bits (21), Expect = 0.054
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 357 cggcggcggcggcggcctcgagctg 381
|||||||||||||||||| ||||||
Sbjct: 179 cggcggcggcggcggccttgagctg 155
>gb|CF427893.1|CF427893 PH1_11_C03.g1_A002 Phosphorous-deficient seedlings Sorghum bicolor
cDNA clone PH1_11_C03_A002 5', mRNA sequence
Length = 722
Score = 42.1 bits (21), Expect = 0.054
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 352 ggtcccggcggcggcggcggc 372
|||||||||||||||||||||
Sbjct: 171 ggtcccggcggcggcggcggc 191
>gb|CF432265.1|CF432265 NIT1_15_H04.g1_A002 Nitrogen-deficient seedlings Sorghum bicolor
cDNA clone NIT1_15_H04_A002 5', mRNA sequence
Length = 208
Score = 42.1 bits (21), Expect = 0.054
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 357 cggcggcggcggcggcctcgagctg 381
|||||||||||||||||| ||||||
Sbjct: 121 cggcggcggcggcggccttgagctg 97
>gb|CF487648.1|CF487648 POL1_45_C07.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_45_C07_A002 3', mRNA sequence
Length = 672
Score = 42.1 bits (21), Expect = 0.054
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 354 tcccggcggcggcggcggcct 374
|||||||||||||||||||||
Sbjct: 109 tcccggcggcggcggcggcct 89
>gb|CN126215.1|CN126215 RHOH1_15_G06.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_15_G06_A002 5', mRNA sequence
Length = 779
Score = 42.1 bits (21), Expect = 0.054
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 357 cggcggcggcggcggcctcgagctg 381
|||||||||||||||||| ||||||
Sbjct: 166 cggcggcggcggcggccttgagctg 142
>gb|CN144023.1|CN144023 WOUND1_19_F02.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_19_F02_A002 5', mRNA sequence
Length = 777
Score = 42.1 bits (21), Expect = 0.054
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 357 cggcggcggcggcggcctcgagctg 381
|||||||||||||||||| ||||||
Sbjct: 165 cggcggcggcggcggccttgagctg 141
>gb|CX612479.1|CX612479 GABR1_2_E01.g1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_2_E01_A002 5', mRNA sequence
Length = 764
Score = 42.1 bits (21), Expect = 0.054
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 352 ggtcccggcggcggcggcggc 372
|||||||||||||||||||||
Sbjct: 618 ggtcccggcggcggcggcggc 638
>gb|CX612994.1|CX612994 GABR1_5_D06.g1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_5_D06_A002 5', mRNA sequence
Length = 783
Score = 42.1 bits (21), Expect = 0.054
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 352 ggtcccggcggcggcggcggc 372
|||||||||||||||||||||
Sbjct: 627 ggtcccggcggcggcggcggc 647
>gb|CX622227.1|CX622227 GABR1_62_E12.g2_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_62_E12_A002 5', mRNA sequence
Length = 790
Score = 42.1 bits (21), Expect = 0.054
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 352 ggtcccggcggcggcggcggc 372
|||||||||||||||||||||
Sbjct: 625 ggtcccggcggcggcggcggc 645
>gb|BZ331238.1|BZ331238 hw07c04.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone hw07c04 5', DNA sequence
Length = 553
Score = 40.1 bits (20), Expect = 0.21
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 356 ccggcggcggcggcggcctcgagc 379
|||||||||||||| |||||||||
Sbjct: 185 ccggcggcggcggcagcctcgagc 208
>gb|CL152276.1|CL152276 104_335_10779847_116_31364_247 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10779847, DNA
sequence
Length = 729
Score = 40.1 bits (20), Expect = 0.21
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 357 cggcggcggcggcggcctcg 376
||||||||||||||||||||
Sbjct: 453 cggcggcggcggcggcctcg 472
>gb|CL153508.1|CL153508 104_338_10780762_116_31370_010 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10780762, DNA
sequence
Length = 721
Score = 40.1 bits (20), Expect = 0.21
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 357 cggcggcggcggcggcctcg 376
||||||||||||||||||||
Sbjct: 453 cggcggcggcggcggcctcg 472
>gb|CL157931.1|CL157931 104_346_10803180_114_31375_156 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10803180, DNA
sequence
Length = 773
Score = 40.1 bits (20), Expect = 0.21
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 359 gcggcggcggcggcctcgagctgg 382
|||||||||||||||||| |||||
Sbjct: 413 gcggcggcggcggcctcgcgctgg 436
>gb|CL165872.1|CL165872 104_361_10808964_116_31821_180 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10808964, DNA
sequence
Length = 701
Score = 40.1 bits (20), Expect = 0.21
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 215 ccttcgccatggccgcggcg 234
||||||||||||||||||||
Sbjct: 234 ccttcgccatggccgcggcg 215
>gb|CL179370.1|CL179370 104_388_10895262_148_31909_174 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10895262, DNA
sequence
Length = 200
Score = 40.1 bits (20), Expect = 0.21
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 353 gtcccggcggcggcggcggc 372
||||||||||||||||||||
Sbjct: 116 gtcccggcggcggcggcggc 135
>gb|CL182302.1|CL182302 104_393_10897334_148_31921_326 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10897334, DNA
sequence
Length = 621
Score = 40.1 bits (20), Expect = 0.21
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 359 gcggcggcggcggcctcgagctgg 382
|||||||||||||||||| |||||
Sbjct: 368 gcggcggcggcggcctcgcgctgg 391
>gb|CL185284.1|CL185284 104_399_10899424_114_32391_060 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10899424, DNA
sequence
Length = 670
Score = 40.1 bits (20), Expect = 0.21
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 357 cggcggcggcggcggcctcg 376
||||||||||||||||||||
Sbjct: 433 cggcggcggcggcggcctcg 452
>gb|CL191164.1|CL191164 104_409_10906602_114_32491_065 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10906602, DNA
sequence
Length = 711
Score = 40.1 bits (20), Expect = 0.21
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 356 ccggcggcggcggcggcctcgagc 379
|||||||||||||| |||||||||
Sbjct: 305 ccggcggcggcggcagcctcgagc 282
>gb|CW028040.1|CW028040 104_254_10498854_114_30395 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10498854, DNA
sequence
Length = 802
Score = 40.1 bits (20), Expect = 0.21
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 356 ccggcggcggcggcggcctcgagc 379
|||||||||||||| |||||||||
Sbjct: 239 ccggcggcggcggcagcctcgagc 262
>gb|CW036052.1|CW036052 104_267_10503538_114_30374 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10503538, DNA
sequence
Length = 645
Score = 40.1 bits (20), Expect = 0.21
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 357 cggcggcggcggcggcctcg 376
||||||||||||||||||||
Sbjct: 580 cggcggcggcggcggcctcg 561
>gb|CW036053.1|CW036053 104_267_10503538_115_30375 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10503538, DNA
sequence
Length = 623
Score = 40.1 bits (20), Expect = 0.21
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 357 cggcggcggcggcggcctcg 376
||||||||||||||||||||
Sbjct: 340 cggcggcggcggcggcctcg 359
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 359,783
Number of Sequences: 832831
Number of extensions: 359783
Number of successful extensions: 167787
Number of sequences better than 0.5: 102
Number of HSP's better than 0.5 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 167413
Number of HSP's gapped (non-prelim): 234
length of query: 559
length of database: 491,359,669
effective HSP length: 19
effective length of query: 540
effective length of database: 475,535,880
effective search space: 256789375200
effective search space used: 256789375200
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)