BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3977955.2.1
(867 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BG357676.1|BG357676 OV2_32_H07.g1_A002 Ovary 2 (OV2) Sor... 676 0.0
gb|CW474162.1|CW474162 fsbb001f229n21k0 Sorghum methylation... 488 e-136
gb|CW117897.1|CW117897 104_494_11107909_148_34622_061 Sorgh... 309 2e-082
gb|BG049225.1|BG049225 OV1_17_B10.g1_A002 Ovary 1 (OV1) Sor... 202 4e-050
gb|CW192234.1|CW192234 104_614_11178915_148_36944_006 Sorgh... 196 2e-048
gb|CW328078.1|CW328078 104_824_11479103_148_35988_096 Sorgh... 184 9e-045
gb|BG048275.1|BG048275 OV1_16_B07.g1_A002 Ovary 1 (OV1) Sor... 184 9e-045
gb|BE918645.1|BE918645 FM1_2_G10.g1_A003 Floral-Induced Mer... 165 8e-039
gb|BG240770.1|BG240770 OV1_38_A10.g1_A002 Ovary 1 (OV1) Sor... 165 8e-039
gb|BG411772.1|BG411772 OV2_37_H05.g1_A002 Ovary 2 (OV2) Sor... 165 8e-039
gb|BG412480.1|BG412480 OV2_34_H02.g1_A002 Ovary 2 (OV2) Sor... 153 3e-035
gb|BG239895.1|BG239895 OV1_30_D03.g1_A002 Ovary 1 (OV1) Sor... 149 5e-034
gb|CW281479.1|CW281479 104_757_11408201_148_35459_077 Sorgh... 139 5e-031
gb|BG412481.1|BG412481 OV2_34_H03.g1_A002 Ovary 2 (OV2) Sor... 125 7e-027
gb|CL182214.1|CL182214 104_393_10897273_116_31922_265 Sorgh... 115 7e-024
gb|CW192233.1|CW192233 104_614_11178915_116_36943_006 Sorgh... 115 7e-024
gb|CW281478.1|CW281478 104_757_11408201_116_35463_077 Sorgh... 115 7e-024
gb|CL150595.1|CL150595 104_332_10778646_114_31357_198 Sorgh... 105 7e-021
gb|CW443774.1|CW443774 fsbb001f164a20k0 Sorghum methylation... 105 7e-021
gb|CW107343.1|CW107343 104_477_11096531_148_34472_040 Sorgh... 88 2e-015
gb|CW155885.1|CW155885 104_558_11146378_148_36365_037 Sorgh... 84 2e-014
gb|CF486088.1|CF486088 POL1_35_D06.g1_A002 Pollen Sorghum b... 84 2e-014
gb|CW172749.1|CW172749 104_584_11156458_148_36543_045 Sorgh... 68 1e-009
gb|CW216947.1|CW216947 104_650_11195395_116_37129_080 Sorgh... 68 1e-009
gb|CW241950.1|CW241950 104_701_11219058_116_37554_073 Sorgh... 68 1e-009
gb|CW241951.1|CW241951 104_701_11219058_148_37553_073 Sorgh... 68 1e-009
gb|CW339306.1|CW339306 104_840_11485203_148_36139_016 Sorgh... 68 1e-009
gb|CW433383.1|CW433383 fsbb001f148j05f0 Sorghum methylation... 68 1e-009
gb|CW121987.1|CW121987 104_500_11110291_116_34665_074 Sorgh... 66 6e-009
gb|CW355045.1|CW355045 fsbb001f019i07f0 Sorghum methylation... 66 6e-009
gb|CW369334.1|CW369334 fsbb001f043l06f0 Sorghum methylation... 66 6e-009
gb|CW057246.1|CW057246 104_299_10518117_115_30171 Sorghum m... 64 2e-008
gb|CW321706.1|CW321706 104_815_11475696_148_35943_094 Sorgh... 60 4e-007
gb|CD205907.1|CD205907 HS1_19_G06.b1_A012 Heat-shocked seed... 60 4e-007
gb|CW276959.1|CW276959 104_750_11405768_116_35395_018 Sorgh... 58 1e-006
gb|CW432733.1|CW432733 fsbb001f147j17k0 Sorghum methylation... 58 1e-006
gb|CX608981.1|CX608981 ANR1_10_A01.b1_A002 Anaerobic roots ... 58 1e-006
gb|CW107342.1|CW107342 104_477_11096531_116_34476_040 Sorgh... 56 6e-006
gb|BZ344309.1|BZ344309 hp62c02.b2 WGS-SbicolorF (JM107 adap... 54 2e-005
gb|CW039719.1|CW039719 104_272_10505656_115_30390 Sorghum m... 54 2e-005
gb|CW152394.1|CW152394 104_553_11144468_116_36324_070 Sorgh... 54 2e-005
gb|CW152395.1|CW152395 104_553_11144468_148_36328_070 Sorgh... 54 2e-005
gb|CW172298.1|CW172298 104_583_11156215_116_36533_024 Sorgh... 54 2e-005
gb|CW276960.1|CW276960 104_750_11405768_148_35399_018 Sorgh... 54 2e-005
gb|CW401835.1|CW401835 fsbb001f092n11k0 Sorghum methylation... 54 2e-005
gb|CW420369.1|CW420369 fsbb001f126k15k0 Sorghum methylation... 54 2e-005
gb|CW339305.1|CW339305 104_840_11485203_116_36138_016 Sorgh... 52 9e-005
gb|AW287387.2|AW287387 LG1_303_C07.b1_A002 Light Grown 1 (L... 52 9e-005
gb|CD203710.1|CD203710 HS1_1_D09.b1_A012 Heat-shocked seedl... 52 9e-005
gb|CD228200.1|CD228200 CCC1_6_B10.b1_A007 Callus culture/ce... 52 9e-005
gb|CD233006.1|CD233006 SS1_11_H04.b1_A012 Salt-stressed see... 52 9e-005
gb|CD432457.1|CD432457 ETH1_30_A08.b1_A002 Ethylene-treated... 52 9e-005
gb|CN125758.1|CN125758 RHOH1_13_D02.b1_A002 Acid- and alkal... 52 9e-005
gb|CX609223.1|CX609223 ANR1_11_H09.b1_A002 Anaerobic roots ... 52 9e-005
gb|BZ369841.1|BZ369841 id13a01.g1 WGS-SbicolorF (DH5a methy... 50 3e-004
gb|CW084628.1|CW084628 104_427_10945909_114_32507_055 Sorgh... 50 3e-004
gb|CW350958.1|CW350958 fsbb001f012i07k0 Sorghum methylation... 50 3e-004
gb|CW400557.1|CW400557 fsbb001f090o22f0 Sorghum methylation... 50 3e-004
gb|CW481932.1|CW481932 fsbb001f241m07f0 Sorghum methylation... 50 3e-004
gb|BF656970.1|BF656970 OV2_19_D03.b1_A002 Ovary 2 (OV2) Sor... 50 3e-004
gb|BG355811.1|BG355811 EM1_17_A06.g1_A002 Embryo 1 (EM1) So... 50 3e-004
gb|CW084629.1|CW084629 104_427_10945909_116_32511_055 Sorgh... 48 0.001
gb|CW396145.1|CW396145 fsbb001f084h12k0 Sorghum methylation... 48 0.001
gb|CL170072.1|CL170072 104_370_10813516_116_31789_220 Sorgh... 46 0.005
gb|CW093325.1|CW093325 104_456_10999713_116_37469_041 Sorgh... 46 0.005
gb|CW097911.1|CW097911 104_464_11002723_148_34364_076 Sorgh... 46 0.005
gb|CW163568.1|CW163568 104_571_11151530_148_36459_011 Sorgh... 46 0.005
gb|CW226326.1|CW226326 104_664_11204826_116_37222_075 Sorgh... 46 0.005
gb|CW255629.1|CW255629 104_720_11226341_148_35134_025 Sorgh... 46 0.005
gb|CW329665.1|CW329665 104_826_11479964_116_35998_076 Sorgh... 46 0.005
gb|CW329666.1|CW329666 104_826_11479964_148_35997_076 Sorgh... 46 0.005
gb|CW383841.1|CW383841 fsbb001f066j05k0 Sorghum methylation... 46 0.005
gb|CW451703.1|CW451703 fsbb001f191o08f0 Sorghum methylation... 46 0.005
gb|CW463110.1|CW463110 fsbb001f211i20f0 Sorghum methylation... 46 0.005
gb|CW469802.1|CW469802 fsbb001f222k22f0 Sorghum methylation... 46 0.005
gb|CW470661.1|CW470661 fsbb001f223p20k0 Sorghum methylation... 46 0.005
gb|CW491288.1|CW491288 fsbb001f281b12k0 Sorghum methylation... 46 0.005
gb|CF481069.1|CF481069 POL1_69_F10.g1_A002 Pollen Sorghum b... 46 0.005
gb|CF486170.1|CF486170 POL1_36_D09.b1_A002 Pollen Sorghum b... 46 0.005
gb|CW075985.1|CW075985 104_364_10810037_114_31802_101 Sorgh... 44 0.021
gb|CW216948.1|CW216948 104_650_11195395_148_37130_080 Sorgh... 44 0.021
gb|CW261457.1|CW261457 104_728_11229521_116_35174_069 Sorgh... 42 0.084
gb|CW266910.1|CW266910 104_736_11232691_148_35285_066 Sorgh... 42 0.084
gb|CF481636.1|CF481636 POL1_73_D06.b1_A002 Pollen Sorghum b... 42 0.084
gb|CW171322.1|CW171322 104_582_11155677_116_36529_095 Sorgh... 40 0.33
gb|CW299265.1|CW299265 104_782_11463020_116_35690_078 Sorgh... 40 0.33
gb|CW349543.1|CW349543 fsbb001f010h01k0 Sorghum methylation... 40 0.33
gb|CW458188.1|CW458188 fsbb001f204f20f0 Sorghum methylation... 40 0.33
gb|CL697208.2|CL697208 SP__Ba0007O16.r SP__Ba Sorghum propi... 40 0.33
gb|CD231524.1|CD231524 SS1_22_A05.b1_A012 Salt-stressed see... 40 0.33
gb|CD233140.1|CD233140 SS1_12_A05.b1_A012 Salt-stressed see... 40 0.33
>gb|BG357676.1|BG357676 OV2_32_H07.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 653
Score = 676 bits (341), Expect = 0.0
Identities = 446/481 (92%)
Strand = Plus / Minus
Query: 248 atgatcagtgcgtcctgcctttttgctcctgcggcagcaatcccgggatgaacggcaccc 307
|||||||||||||||| |||| |||||||||||||||||||||||| ||||| |||||||
Sbjct: 481 atgatcagtgcgtccttccttgttgctcctgcggcagcaatcccggtatgaatggcaccc 422
Query: 308 cgaacttggggatgaactgctgcccctggatgaaggtctccacggtgaactccttctgcg 367
| |||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct: 421 cccactttgggatgaactgctgtccctggatgaaggtctcgacggtgaactccttctgcg 362
Query: 368 cctcctcgtaggtgacggtcttgatgcctccccacttggcgcgcttgctcatgtcggcgc 427
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 361 cctcctcgtaggtgacggtcttgatgccgccccacttggcgcgcttgctcatgtcggcgc 302
Query: 428 cgtcgccgcggttgtccacctccgcgtagaagagcgtctcgaggccgaagtcgccgttcc 487
|| |||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 301 cggcgcctcggttgtcgacctcggcgtagaagagcgtctcgaggccgaagtcgccgttcc 242
Query: 488 actcgagccagcccttggggtcgatgaagccgccgatgtcgttctggatgtagatcgtcc 547
|||||||||| |||||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct: 241 actcgagccatcccttggggtcgatgaagcccccgatgtcgttctggatgtagagcgtcc 182
Query: 548 gggagtactccttccagggccgcgccaggtacgtgcggatcttcccgccggcttcctcct 607
|||||||||||||||| |||| || ||||| ||| |||||| |||||||| || |||
Sbjct: 181 gggagtactccttccatggcctggcgaggtaggtggcgatcttgccgccggcgtcggcct 122
Query: 608 tgaagtccgggtggggctcgatggtgcagttgtgcagcacggtgccgcccacggagcgct 667
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 121 tgaagtccgggtgcggctcgatggtgcagttgtgcagcacggtgccgccgacggagcgct 62
Query: 668 tgtcccgccgcccctgcgccgtgatgatgttggcctggttcgccatgggcttccggggct 727
||||||| || ||||||||||||||||||||||||||||| | |||||||||||| ||||
Sbjct: 61 tgtcccggcggccctgcgccgtgatgatgttggcctggttgggcatgggcttccgtggct 2
Query: 728 g 728
|
Sbjct: 1 g 1
Score = 56.0 bits (28), Expect = 6e-006
Identities = 41/45 (91%), Gaps = 4/45 (8%)
Strand = Plus / Minus
Query: 130 tactagagtacagtggacatatta----gtgggctgggccggggg 170
|||||||||||||||||||||||| |||||||||||||||||
Sbjct: 614 tactagagtacagtggacatattagtaggtgggctgggccggggg 570
>gb|CW474162.1|CW474162 fsbb001f229n21k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f229n21, DNA
sequence
Length = 496
Score = 488 bits (246), Expect = e-136
Identities = 297/314 (94%)
Strand = Plus / Plus
Query: 248 atgatcagtgcgtcctgcctttttgctcctgcggcagcaatcccgggatgaacggcaccc 307
|||||||||||||||| |||| |||||||||||||||||||||||| ||||| |||||||
Sbjct: 183 atgatcagtgcgtccttccttgttgctcctgcggcagcaatcccggtatgaatggcaccc 242
Query: 308 cgaacttggggatgaactgctgcccctggatgaaggtctccacggtgaactccttctgcg 367
| |||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct: 243 cccactttgggatgaactgctgtccctggatgaaggtctcgacggtgaactccttctgcg 302
Query: 368 cctcctcgtaggtgacggtcttgatgcctccccacttggcgcgcttgctcatgtcggcgc 427
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 303 cctcctcgtaggtgacggtcttgatgccgccccacttggcgcgcttgctcatgtcggcgc 362
Query: 428 cgtcgccgcggttgtccacctccgcgtagaagagcgtctcgaggccgaagtcgccgttcc 487
|| |||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 363 cggcgcctcggttgtcgacctcggcgtagaagagcgtctcgaggccgaagtcgccgttcc 422
Query: 488 actcgagccagcccttggggtcgatgaagccgccgatgtcgttctggatgtagatcgtcc 547
|||||||||| |||||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct: 423 actcgagccatcccttggggtcgatgaagcccccgatgtcgttctggatgtagagcgtcc 482
Query: 548 gggagtactccttc 561
||||||||||||||
Sbjct: 483 gggagtactccttc 496
Score = 56.0 bits (28), Expect = 6e-006
Identities = 41/45 (91%), Gaps = 4/45 (8%)
Strand = Plus / Plus
Query: 130 tactagagtacagtggacatatta----gtgggctgggccggggg 170
|||||||||||||||||||||||| |||||||||||||||||
Sbjct: 50 tactagagtacagtggacatattagtaggtgggctgggccggggg 94
>gb|CW117897.1|CW117897 104_494_11107909_148_34622_061 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11107909, DNA
sequence
Length = 220
Score = 309 bits (156), Expect = 2e-082
Identities = 204/220 (92%)
Strand = Plus / Minus
Query: 638 tgtgcagcacggtgccgcccacggagcgcttgtcccgccgcccctgcgccgtgatgatgt 697
||||||||||||||||||| ||||||||||||||||| || || ||||||||||||||||
Sbjct: 220 tgtgcagcacggtgccgccgacggagcgcttgtcccggcggccatgcgccgtgatgatgt 161
Query: 698 tggcctggttcgccatgggcttccggggctggatcaggcagttctgcagcaccacctggg 757
|||| ||||| | |||||||||||| |||||||| |||||||| ||||||||||| ||||
Sbjct: 160 tggcttggttgggcatgggcttccgtggctggatgaggcagttgtgcagcaccacatggg 101
Query: 758 agttgccgaagatgaagtcgatggtgccggtcacccggcagtcgcggaagaactgccgct 817
|||||| ||||||||||||||||||||| || || |||||||||||||||||||||||||
Sbjct: 100 agttgctgaagatgaagtcgatggtgcccgtgacgcggcagtcgcggaagaactgccgct 41
Query: 818 gcgcgtgcgtgtacagcgtgtcctggtagccgtcgaaggt 857
||||||||||||| ||||||||||||||||||||||||||
Sbjct: 40 gcgcgtgcgtgtagagcgtgtcctggtagccgtcgaaggt 1
>gb|BG049225.1|BG049225 OV1_17_B10.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 661
Score = 202 bits (102), Expect = 4e-050
Identities = 455/572 (79%), Gaps = 3/572 (0%)
Strand = Plus / Minus
Query: 276 ctgcggcagcaatcccgggatgaacggcaccccgaacttggggatgaactgctgcccctg 335
||||||||||| ||| ||||||| ||||| |||| || |||| | ||||| |||||
Sbjct: 572 ctgcggcagcagccccaggatgaatggcacgccgagctgtgggagccagtgctggccctg 513
Query: 336 gatgaaggtctccacggtgaactccttctgcgcctcctcgtaggtgacggtcttgatgcc 395
||||||| ||||||||||| ||| || | |||| | || |||||||| | |||||| |||
Sbjct: 512 gatgaagctctccacggtgtacttctgcagcgcgtgctggtaggtgatgttcttgacgcc 453
Query: 396 tccccacttggcgcgcttgctcatgtcggcgccgtcgccgcggttgtccacctccgcgta 455
| ||||||| | ||||||||| ||||||||||| | |||||||| |||||||| |||||
Sbjct: 452 cctccacttgacacgcttgctcgtgtcggcgccggccccgcggttctccacctcggcgta 393
Query: 456 gaagagcgtctcgaggccgaagtcgccgttccactcgagccagcccttggggtcgatgaa 515
| || || |||||||||||||||| |||| ||||| |||||||||||||||||
Sbjct: 392 gtagcaggtgctgaggccgaagtcgccgagccacggcagccaccccttggggtcgatgaa 333
Query: 516 gccgccgatgtcgttctggatgtagatcgtccgggagtactccttccagggccgcgccag 575
||| ||||| || ||||||||||| ||| || |||| ||||||||| |||||| ||||
Sbjct: 332 gcccccgatctccgactggatgtagagcgtgcgcgagtgctccttccacggccgccccag 273
Query: 576 gtacgtgcggatcttcc---cgccggcttcctccttgaagtccgggtggggctcgatggt 632
| | || | || ||| | ||||||| || || ||| |||||||| |||||||||||
Sbjct: 272 gaaggtcctgagcttgccgtcgccggcgctcttctcgaactccgggtgcggctcgatggt 213
Query: 633 gcagttgtgcagcacggtgccgcccacggagcgcttgtcccgccgcccctgcgccgtgat 692
||||||||| | |||||||||||| | || | | | ||| || ||||||||||| |
Sbjct: 212 gcagttgtggatgacggtgccgcccgccgacctcctctccttgcggccctgcgccgtcac 153
Query: 693 gatgttggcctggttcgccatgggcttccggggctggatcaggcagttctgcagcaccac 752
|||||| |||||| ||||| ||| || |||||| ||||||||||| | ||||||
Sbjct: 152 gatgttctgctggttgtccatgcacttgcgcacctggatgaggcagttctggaacaccac 93
Query: 753 ctgggagttgccgaagatgaagtcgatggtgccggtcacccggcagtcgcggaagaactg 812
||| | ||||||||||||||||||||||||||| || | ||| |||||| || ||||
Sbjct: 92 ctgcgcgttgccgaagatgaagtcgatggtgcccgtgatgacgcactcgcggtagtactg 33
Query: 813 ccgctgcgcgtgcgtgtacagcgtgtcctggt 844
||| || |||||||||||||||||||||||
Sbjct: 32 ccggctcgtgtgcgtgtacagcgtgtcctggt 1
>gb|CW192234.1|CW192234 104_614_11178915_148_36944_006 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11178915, DNA
sequence
Length = 655
Score = 196 bits (99), Expect = 2e-048
Identities = 410/513 (79%), Gaps = 3/513 (0%)
Strand = Plus / Plus
Query: 276 ctgcggcagcaatcccgggatgaacggcaccccgaacttggggatgaactgctgcccctg 335
||||||||||| ||||||||||| ||||| |||| || |||| | ||||| |||||
Sbjct: 94 ctgcggcagcagccccgggatgaatggcacgccgagctgtgggagccagtgctggccctg 153
Query: 336 gatgaaggtctccacggtgaactccttctgcgcctcctcgtaggtgacggtcttgatgcc 395
||||||| ||||||||||| ||| || | |||| | || |||||||| | |||||| |||
Sbjct: 154 gatgaagctctccacggtgtacttctgcagcgcgtgctggtaggtgatgttcttgacgcc 213
Query: 396 tccccacttggcgcgcttgctcatgtcggcgccgtcgccgcggttgtccacctccgcgta 455
| ||||||| | ||||||||| ||||||||||| | |||||||| |||||||| |||||
Sbjct: 214 cctccacttgacacgcttgctcgtgtcggcgccggccccgcggttctccacctcggcgta 273
Query: 456 gaagagcgtctcgaggccgaagtcgccgttccactcgagccagcccttggggtcgatgaa 515
| || || |||||||||||||||| |||| ||||| |||||||||||||||||
Sbjct: 274 gtagcaggtgctgaggccgaagtcgccgagccacggcagccaccccttggggtcgatgaa 333
Query: 516 gccgccgatgtcgttctggatgtagatcgtccgggagtactccttccagggccgcgccag 575
||| ||||| || ||||||||||| ||| || |||| ||||||||| |||||| ||||
Sbjct: 334 gcccccgatctccgactggatgtagagcgtgcgcgagtgctccttccacggccgccccag 393
Query: 576 gtacgtgcggatcttcc---cgccggcttcctccttgaagtccgggtggggctcgatggt 632
| | || | || ||| | ||||||| || || ||| |||||||| |||||||||||
Sbjct: 394 gaaggtcctgagcttgccgtcgccggcgctcttctcgaactccgggtgcggctcgatggt 453
Query: 633 gcagttgtgcagcacggtgccgcccacggagcgcttgtcccgccgcccctgcgccgtgat 692
||||||||| | |||||||||||| | || | | | ||| || ||||||||||| |
Sbjct: 454 gcagttgtggatgacggtgccgcccgccgacctcctctccttgcggccctgcgccgtcac 513
Query: 693 gatgttggcctggttcgccatgggcttccggggctggatcaggcagttctgcagcaccac 752
|||||| |||||| ||||| ||| || |||||| ||||||||||| | ||||||
Sbjct: 514 gatgttctgctggttgtccatgcacttgcgcacctggatgaggcagttctggaacaccac 573
Query: 753 ctgggagttgccgaagatgaagtcgatggtgcc 785
||| | |||||||||||||||||||||||||||
Sbjct: 574 ctgcgcgttgccgaagatgaagtcgatggtgcc 606
>gb|CW328078.1|CW328078 104_824_11479103_148_35988_096 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11479103, DNA
sequence
Length = 666
Score = 184 bits (93), Expect = 9e-045
Identities = 404/507 (79%), Gaps = 3/507 (0%)
Strand = Plus / Minus
Query: 276 ctgcggcagcaatcccgggatgaacggcaccccgaacttggggatgaactgctgcccctg 335
||||||||||| ||||||||||| ||||| |||| || |||| | ||||| |||||
Sbjct: 507 ctgcggcagcagccccgggatgaatggcacgccgagctgtgggagccagtgctggccctg 448
Query: 336 gatgaaggtctccacggtgaactccttctgcgcctcctcgtaggtgacggtcttgatgcc 395
||||||| ||||||||||| ||| || | |||| | || |||||||| | |||||| |||
Sbjct: 447 gatgaagctctccacggtgtacttctgcagcgcgtgctggtaggtgatgttcttgacgcc 388
Query: 396 tccccacttggcgcgcttgctcatgtcggcgccgtcgccgcggttgtccacctccgcgta 455
| ||||||| | ||||||||| ||||||||||| | |||||||| |||||||| |||||
Sbjct: 387 cctccacttgacacgcttgctcgtgtcggcgccggccccgcggttctccacctcggcgta 328
Query: 456 gaagagcgtctcgaggccgaagtcgccgttccactcgagccagcccttggggtcgatgaa 515
| || || |||||||||||||||| |||| ||||| |||||||||||||||||
Sbjct: 327 gtagcaggtgctgaggccgaagtcgccgagccacggcagccaccccttggggtcgatgaa 268
Query: 516 gccgccgatgtcgttctggatgtagatcgtccgggagtactccttccagggccgcgccag 575
||| ||||| || ||||||||||| ||| || |||| ||||||||| |||||| ||||
Sbjct: 267 gcccccgatctccgactggatgtagagcgtgcgcgagtgctccttccacggccgccccag 208
Query: 576 gtacgtgcggatcttcc---cgccggcttcctccttgaagtccgggtggggctcgatggt 632
| | || | || ||| | ||||||| || || ||| |||||||| |||||||||||
Sbjct: 207 gaaggtcctgagcttgccgtcgccggcgctcttctcgaactccgggtgcggctcgatggt 148
Query: 633 gcagttgtgcagcacggtgccgcccacggagcgcttgtcccgccgcccctgcgccgtgat 692
||||||||| | |||||||||||| | || | | | ||| || ||||||||||| |
Sbjct: 147 gcagttgtggatgacggtgccgcccgccgacctcctctccttgcggccctgcgccgtcac 88
Query: 693 gatgttggcctggttcgccatgggcttccggggctggatcaggcagttctgcagcaccac 752
|||||| |||||| ||||| ||| || |||||| ||||||||||| | ||||||
Sbjct: 87 gatgttctgctggttgtccatgcacttgcgcacctggatgaggcagttctggaacaccac 28
Query: 753 ctgggagttgccgaagatgaagtcgat 779
||| | |||||||||||||||||||||
Sbjct: 27 ctgcgcgttgccgaagatgaagtcgat 1
>gb|BG048275.1|BG048275 OV1_16_B07.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 513
Score = 184 bits (93), Expect = 9e-045
Identities = 407/511 (79%), Gaps = 3/511 (0%)
Strand = Plus / Minus
Query: 344 tctccacggtgaactccttctgcgcctcctcgtaggtgacggtcttgatgcctccccact 403
||||||||||| ||| || | |||| | || |||||||| | |||||| ||| | |||||
Sbjct: 511 tctccacggtgtacttctgcagcgcgtgctggtaggtgatgttcttgacgcccctccact 452
Query: 404 tggcgcgcttgctcatgtcggcgccgtcgccgcggttgtccacctccgcgtagaagagcg 463
|| | ||||||||| ||||||||||| | |||||||| |||||||| |||||| || |
Sbjct: 451 tgacacgcttgctcgtgtcggcgccggccccgcggttctccacctcggcgtagtagcagg 392
Query: 464 tctcgaggccgaagtcgccgttccactcgagccagcccttggggtcgatgaagccgccga 523
| |||||||||||||||| |||| ||||| |||||||||||||||||||| ||||
Sbjct: 391 tgctgaggccgaagtcgccgagccacggcagccaccccttggggtcgatgaagcccccga 332
Query: 524 tgtcgttctggatgtagatcgtccgggagtactccttccagggccgcgccaggtacgtgc 583
| || ||||||||||| ||| || |||| ||||||||| |||||| ||||| | || |
Sbjct: 331 tctccgactggatgtagagcgtgcgcgagtgctccttccacggccgccccaggaaggtcc 272
Query: 584 ggatcttcc---cgccggcttcctccttgaagtccgggtggggctcgatggtgcagttgt 640
|| ||| | ||||||| || || ||| |||||||| |||||||||||||||||||
Sbjct: 271 tgagcttgccgtcgccggcgctcttctcgaactccgggtgcggctcgatggtgcagttgt 212
Query: 641 gcagcacggtgccgcccacggagcgcttgtcccgccgcccctgcgccgtgatgatgttgg 700
| | |||||||||||| | || | | | ||| || ||||||||||| | ||||||
Sbjct: 211 ggatgacggtgccgcccgccgacctcctctccttgcggccctgcgccgtcacgatgttct 152
Query: 701 cctggttcgccatgggcttccggggctggatcaggcagttctgcagcaccacctgggagt 760
|||||| ||||| ||| || |||||| ||||||||||| | ||||||||| | ||
Sbjct: 151 gctggttgtccatgcacttgcgcacctggatgaggcagttctggaacaccacctgcgcgt 92
Query: 761 tgccgaagatgaagtcgatggtgccggtcacccggcagtcgcggaagaactgccgctgcg 820
||||||||||||||||||||||||| || | ||| |||||| || ||||||| ||
Sbjct: 91 tgccgaagatgaagtcgatggtgcccgtgatgacgcactcgcggtagtactgccggctcg 32
Query: 821 cgtgcgtgtacagcgtgtcctggtagccgtc 851
|||||||||||||||||||||||| |||||
Sbjct: 31 tgtgcgtgtacagcgtgtcctggtacccgtc 1
>gb|BE918645.1|BE918645 FM1_2_G10.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 564
Score = 165 bits (83), Expect = 8e-039
Identities = 310/385 (80%), Gaps = 3/385 (0%)
Strand = Plus / Minus
Query: 276 ctgcggcagcaatcccgggatgaacggcaccccgaacttggggatgaactgctgcccctg 335
||||||||||| ||||||||||| ||||| |||| || |||| | ||||| |||||
Sbjct: 451 ctgcggcagcagccccgggatgaatggcacgccgagctgtgggagccagtgctggccctg 392
Query: 336 gatgaaggtctccacggtgaactccttctgcgcctcctcgtaggtgacggtcttgatgcc 395
||||||| ||||||||||| ||| || | |||| | || |||||||| | |||||| |||
Sbjct: 391 gatgaagctctccacggtgtacttctgcagcgcgtgctggtaggtgatgttcttgacgcc 332
Query: 396 tccccacttggcgcgcttgctcatgtcggcgccgtcgccgcggttgtccacctccgcgta 455
| ||||||| | ||||||||| ||||||||||| | |||||||| |||||||| |||||
Sbjct: 331 cctccacttgacacgcttgctcgtgtcggcgccggccccgcggttctccacctcggcgta 272
Query: 456 gaagagcgtctcgaggccgaagtcgccgttccactcgagccagcccttggggtcgatgaa 515
| || || |||||||||||||||| |||| ||||| |||||||||||||||||
Sbjct: 271 gtagcaggtgctgaggccgaagtcgccgagccacggcagccaccccttggggtcgatgaa 212
Query: 516 gccgccgatgtcgttctggatgtagatcgtccgggagtactccttccagggccgcgccag 575
||| ||||| || ||||||||||| ||| || |||| ||||||||| |||||| ||||
Sbjct: 211 gcccccgatctccgactggatgtagagcgtgcgcgagtgctccttccacggccgccccag 152
Query: 576 gtacgtgcggatcttcc---cgccggcttcctccttgaagtccgggtggggctcgatggt 632
| | || | || ||| | ||||||| || || ||| |||||||| |||||||||||
Sbjct: 151 gaaggtcctgagcttgccgtcgccggcgctcttctcgaactccgggtgcggctcgatggt 92
Query: 633 gcagttgtgcagcacggtgccgccc 657
||||||||| | ||||||||||||
Sbjct: 91 gcagttgtggatgacggtgccgccc 67
>gb|BG240770.1|BG240770 OV1_38_A10.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 555
Score = 165 bits (83), Expect = 8e-039
Identities = 310/385 (80%), Gaps = 3/385 (0%)
Strand = Plus / Minus
Query: 276 ctgcggcagcaatcccgggatgaacggcaccccgaacttggggatgaactgctgcccctg 335
||||||||||| ||||||||||| ||||| |||| || |||| | ||||| |||||
Sbjct: 464 ctgcggcagcagccccgggatgaatggcacgccgagctgtgggagccagtgctggccctg 405
Query: 336 gatgaaggtctccacggtgaactccttctgcgcctcctcgtaggtgacggtcttgatgcc 395
||||||| ||||||||||| ||| || | |||| | || |||||||| | |||||| |||
Sbjct: 404 gatgaagctctccacggtgtacttctgcagcgcgtgctggtaggtgatgttcttgacgcc 345
Query: 396 tccccacttggcgcgcttgctcatgtcggcgccgtcgccgcggttgtccacctccgcgta 455
| ||||||| | ||||||||| ||||||||||| | |||||||| |||||||| |||||
Sbjct: 344 cctccacttgacacgcttgctcgtgtcggcgccggccccgcggttctccacctcggcgta 285
Query: 456 gaagagcgtctcgaggccgaagtcgccgttccactcgagccagcccttggggtcgatgaa 515
| || || |||||||||||||||| |||| ||||| |||||||||||||||||
Sbjct: 284 gtagcaggtgctgaggccgaagtcgccgagccacggcagccaccccttggggtcgatgaa 225
Query: 516 gccgccgatgtcgttctggatgtagatcgtccgggagtactccttccagggccgcgccag 575
||| ||||| || ||||||||||| ||| || |||| ||||||||| |||||| ||||
Sbjct: 224 gcccccgatctccgactggatgtagagcgtgcgcgagtgctccttccacggccgccccag 165
Query: 576 gtacgtgcggatcttcc---cgccggcttcctccttgaagtccgggtggggctcgatggt 632
| | || | || ||| | ||||||| || || ||| |||||||| |||||||||||
Sbjct: 164 gaaggtcctgagcttgccgtcgccggcgctcttctcgaactccgggtgcggctcgatggt 105
Query: 633 gcagttgtgcagcacggtgccgccc 657
||||||||| | ||||||||||||
Sbjct: 104 gcagttgtggatgacggtgccgccc 80
>gb|BG411772.1|BG411772 OV2_37_H05.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 594
Score = 165 bits (83), Expect = 8e-039
Identities = 310/385 (80%), Gaps = 3/385 (0%)
Strand = Plus / Minus
Query: 276 ctgcggcagcaatcccgggatgaacggcaccccgaacttggggatgaactgctgcccctg 335
||||||||||| ||||||||||| ||||| |||| || |||| | ||||| |||||
Sbjct: 467 ctgcggcagcagccccgggatgaatggcacgccgagctgtgggagccagtgctggccctg 408
Query: 336 gatgaaggtctccacggtgaactccttctgcgcctcctcgtaggtgacggtcttgatgcc 395
||||||| ||||||||||| ||| || | |||| | || |||||||| | |||||| |||
Sbjct: 407 gatgaagctctccacggtgtacttctgcagcgcgtgctggtaggtgatgttcttgacgcc 348
Query: 396 tccccacttggcgcgcttgctcatgtcggcgccgtcgccgcggttgtccacctccgcgta 455
| ||||||| | ||||||||| ||||||||||| | |||||||| |||||||| |||||
Sbjct: 347 cctccacttgacacgcttgctcgtgtcggcgccggccccgcggttctccacctcggcgta 288
Query: 456 gaagagcgtctcgaggccgaagtcgccgttccactcgagccagcccttggggtcgatgaa 515
| || || |||||||||||||||| |||| ||||| |||||||||||||||||
Sbjct: 287 gtagcaggtgctgaggccgaagtcgccgagccacggcagccaccccttggggtcgatgaa 228
Query: 516 gccgccgatgtcgttctggatgtagatcgtccgggagtactccttccagggccgcgccag 575
||| ||||| || ||||||||||| ||| || |||| ||||||||| |||||| ||||
Sbjct: 227 gcccccgatctccgactggatgtagagcgtgcgcgagtgctccttccacggccgccccag 168
Query: 576 gtacgtgcggatcttcc---cgccggcttcctccttgaagtccgggtggggctcgatggt 632
| | || | || ||| | ||||||| || || ||| |||||||| |||||||||||
Sbjct: 167 gaaggtcctgagcttgccgtcgccggcgctcttctcgaactccgggtgcggctcgatggt 108
Query: 633 gcagttgtgcagcacggtgccgccc 657
||||||||| | ||||||||||||
Sbjct: 107 gcagttgtggatgacggtgccgccc 83
>gb|BG412480.1|BG412480 OV2_34_H02.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 506
Score = 153 bits (77), Expect = 3e-035
Identities = 245/301 (81%)
Strand = Plus / Minus
Query: 276 ctgcggcagcaatcccgggatgaacggcaccccgaacttggggatgaactgctgcccctg 335
||||||||||| ||||||||||| ||||| |||| || |||| | ||||| |||||
Sbjct: 385 ctgcggcagcagccccgggatgaatggcacgccgagctgtgggagccagtgctggccctg 326
Query: 336 gatgaaggtctccacggtgaactccttctgcgcctcctcgtaggtgacggtcttgatgcc 395
||||||| ||||||||||| ||| || | |||| | || |||||||| | |||||| |||
Sbjct: 325 gatgaagctctccacggtgtacttctgcagcgcgtgctggtaggtgatgttcttgacgcc 266
Query: 396 tccccacttggcgcgcttgctcatgtcggcgccgtcgccgcggttgtccacctccgcgta 455
| ||||||| | ||||||||| ||||||||||| | |||||||| |||||||| |||||
Sbjct: 265 cctccacttgacacgcttgctcgtgtcggcgccggccccgcggttctccacctcggcgta 206
Query: 456 gaagagcgtctcgaggccgaagtcgccgttccactcgagccagcccttggggtcgatgaa 515
| || || |||||||||||||||| |||| ||||| |||||||||||||||||
Sbjct: 205 gtagcaggtgctgaggccgaagtcgccgagccacggcagccaccccttggggtcgatgaa 146
Query: 516 gccgccgatgtcgttctggatgtagatcgtccgggagtactccttccagggccgcgccag 575
||| ||||| || ||||||||||| ||| || |||| ||||||||| |||||| ||||
Sbjct: 145 gcccccgatctccgactggatgtagagcgtgcgcgagtgctccttccacggccgccccag 86
Query: 576 g 576
|
Sbjct: 85 g 85
Score = 54.0 bits (27), Expect = 2e-005
Identities = 39/43 (90%)
Strand = Plus / Minus
Query: 615 cgggtggggctcgatggtgcagttgtgcagcacggtgccgccc 657
|||||| |||||||||||||||||||| | ||||||||||||
Sbjct: 43 cgggtgcggctcgatggtgcagttgtggatgacggtgccgccc 1
>gb|BG239895.1|BG239895 OV1_30_D03.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 455
Score = 149 bits (75), Expect = 5e-034
Identities = 296/369 (80%), Gaps = 3/369 (0%)
Strand = Plus / Minus
Query: 276 ctgcggcagcaatcccgggatgaacggcaccccgaacttggggatgaactgctgcccctg 335
||||||||||| ||| ||||||| ||||| |||| || |||| | ||||| |||||
Sbjct: 374 ctgcggcagcagccccaggatgaatggcacgccgagctgtgggagccagtgctggccctg 315
Query: 336 gatgaaggtctccacggtgaactccttctgcgcctcctcgtaggtgacggtcttgatgcc 395
||||||| ||||||||||| ||| || | |||| | || |||||||| | |||||| |||
Sbjct: 314 gatgaagctctccacggtgtacttctgcagcgcgtgctggtaggtgatgttcttgacgcc 255
Query: 396 tccccacttggcgcgcttgctcatgtcggcgccgtcgccgcggttgtccacctccgcgta 455
| ||||||| | ||||||||| ||||||||||| | |||||||| |||||||| |||||
Sbjct: 254 cctccacttgacacgcttgctcgtgtcggcgccggccccgcggttctccacctcggcgta 195
Query: 456 gaagagcgtctcgaggccgaagtcgccgttccactcgagccagcccttggggtcgatgaa 515
| || || |||||||||||||||| |||| ||||| |||||||||||||||||
Sbjct: 194 gtagcaggtgctgaggccgaagtcgccgagccacggcagccaccccttggggtcgatgaa 135
Query: 516 gccgccgatgtcgttctggatgtagatcgtccgggagtactccttccagggccgcgccag 575
||| ||||| || ||||||||||| ||| || |||| ||||||||| |||||| ||||
Sbjct: 134 gcccccgatctccgactggatgtagagcgtgcgcgagtgctccttccacggccgccccag 75
Query: 576 gtacgtgcggatcttcc---cgccggcttcctccttgaagtccgggtggggctcgatggt 632
| | || | || ||| | ||||||| || || ||| |||||||| |||||||||||
Sbjct: 74 gaaggtcctgagcttgccgtcgccggcgctcttctcgaactccgggtgcggctcgatggt 15
Query: 633 gcagttgtg 641
|||||||||
Sbjct: 14 gcagttgtg 6
>gb|CW281479.1|CW281479 104_757_11408201_148_35459_077 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11408201, DNA
sequence
Length = 593
Score = 139 bits (70), Expect = 5e-031
Identities = 232/286 (81%)
Strand = Plus / Plus
Query: 276 ctgcggcagcaatcccgggatgaacggcaccccgaacttggggatgaactgctgcccctg 335
||||||||||| ||||||||||| ||||| |||| || |||| | ||||| |||||
Sbjct: 303 ctgcggcagcagccccgggatgaatggcacgccgagctgtgggagccagtgctggccctg 362
Query: 336 gatgaaggtctccacggtgaactccttctgcgcctcctcgtaggtgacggtcttgatgcc 395
||||||| ||||||||||| ||| || | |||| | || |||||||| | |||||| |||
Sbjct: 363 gatgaagctctccacggtgtacttctgcagcgcgtgctggtaggtgatgttcttgacgcc 422
Query: 396 tccccacttggcgcgcttgctcatgtcggcgccgtcgccgcggttgtccacctccgcgta 455
| ||||||| | ||||||||| ||||||||||| | |||||||| |||||||| |||||
Sbjct: 423 cctccacttgacacgcttgctcgtgtcggcgccggccccgcggttctccacctcggcgta 482
Query: 456 gaagagcgtctcgaggccgaagtcgccgttccactcgagccagcccttggggtcgatgaa 515
| || || |||||||||||||||| |||| ||||| |||||||||||||||||
Sbjct: 483 gtagcaggtgctgaggccgaagtcgccgagccacggcagccaccccttggggtcgatgaa 542
Query: 516 gccgccgatgtcgttctggatgtagatcgtccgggagtactccttc 561
||| ||||| || ||||||||||| ||| || |||| |||||||
Sbjct: 543 gcccccgatctccgactggatgtagagcgtgcgcgagtgctccttc 588
>gb|BG412481.1|BG412481 OV2_34_H03.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 420
Score = 125 bits (63), Expect = 7e-027
Identities = 270/337 (80%), Gaps = 4/337 (1%)
Strand = Plus / Minus
Query: 325 tgctgcccctggatgaaggt-ctccacggtgaactccttctgcgcctcctcgtaggtgac 383
||||| |||||||||||| |||||||||| ||| || | |||| | || ||||||||
Sbjct: 413 tgctggccctggatgaagcagctccacggtgtacttctgcagcgcgtgctggtaggtgat 354
Query: 384 ggtcttgatgcctccccacttggcgcgcttgctcatgtcggcgccgtcgccgcggttgtc 443
| |||||| ||| | ||||||| | ||||||||| ||||||||||| | |||||||| ||
Sbjct: 353 gttcttgacgcccctccacttgacacgcttgctcgtgtcggcgccggccccgcggttctc 294
Query: 444 cacctccgcgtagaagagcgtctcgaggccgaagtcgccgttccactcgagccagccctt 503
|||||| ||||| || || |||||||||||||||| |||| ||||| |||||
Sbjct: 293 cacctcggcgtactagcaggtgctgaggccgaagtcgccgagccacggcagccacccctt 234
Query: 504 ggggtcgatgaagccgccgatgtcgttctggatgtagatcgtccgggagtactccttcca 563
||||||||||||||| ||||| || ||||||||||| ||| || |||| |||||||||
Sbjct: 233 ggggtcgatgaagcccccgatctccgactggatgtagagcgtgcgcgagtgctccttcca 174
Query: 564 gggccgcgccaggtacgtgcggatcttcc---cgccggcttcctccttgaagtccgggtg 620
|||||| ||||| | || | || ||| | ||||||| || || ||| ||||||||
Sbjct: 173 cggccgccccaggaaggtcctgagcttgccgtcgccggcgctcttctcgaactccgggtg 114
Query: 621 gggctcgatggtgcagttgtgcagcacggtgccgccc 657
|||||||||||||||||||| | ||||||||||||
Sbjct: 113 cggctcgatggtgcagttgtggatgacggtgccgccc 77
>gb|CL182214.1|CL182214 104_393_10897273_116_31922_265 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10897273, DNA
sequence
Length = 729
Score = 115 bits (58), Expect = 7e-024
Identities = 196/242 (80%)
Strand = Plus / Plus
Query: 613 tccgggtggggctcgatggtgcagttgtgcagcacggtgccgcccacggagcgcttgtcc 672
|||||||| |||||||||||||||||||| | |||||||||||| | || | | | |||
Sbjct: 13 tccgggtgcggctcgatggtgcagttgtggatgacggtgccgcccgccgacctcctctcc 72
Query: 673 cgccgcccctgcgccgtgatgatgttggcctggttcgccatgggcttccggggctggatc 732
|| ||||||||||| | |||||| |||||| ||||| ||| || ||||||
Sbjct: 73 ttgcggccctgcgccgtcacgatgttctgctggttgtccatgcacttgcgcacctggatg 132
Query: 733 aggcagttctgcagcaccacctgggagttgccgaagatgaagtcgatggtgccggtcacc 792
||||||||||| | ||||||||| | ||||||||||||||||||||||||||| || |
Sbjct: 133 aggcagttctggaacaccacctgcgcgttgccgaagatgaagtcgatggtgcccgtgatg 192
Query: 793 cggcagtcgcggaagaactgccgctgcgcgtgcgtgtacagcgtgtcctggtagccgtcg 852
||| |||||| || ||||||| || |||||||||||||||||||||||| ||||||
Sbjct: 193 acgcactcgcggtagtactgccggctcgtgtgcgtgtacagcgtgtcctggtacccgtcg 252
Query: 853 aa 854
||
Sbjct: 253 aa 254
>gb|CW192233.1|CW192233 104_614_11178915_116_36943_006 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11178915, DNA
sequence
Length = 655
Score = 115 bits (58), Expect = 7e-024
Identities = 196/242 (80%)
Strand = Plus / Minus
Query: 613 tccgggtggggctcgatggtgcagttgtgcagcacggtgccgcccacggagcgcttgtcc 672
|||||||| |||||||||||||||||||| | |||||||||||| | || | | | |||
Sbjct: 647 tccgggtgcggctcgatggtgcagttgtggatgacggtgccgcccgccgacctcctctcc 588
Query: 673 cgccgcccctgcgccgtgatgatgttggcctggttcgccatgggcttccggggctggatc 732
|| ||||||||||| | |||||| |||||| ||||| ||| || ||||||
Sbjct: 587 ttgcggccctgcgccgtcacgatgttctgctggttgtccatgcacttgcgcacctggatg 528
Query: 733 aggcagttctgcagcaccacctgggagttgccgaagatgaagtcgatggtgccggtcacc 792
||||||||||| | ||||||||| | ||||||||||||||||||||||||||| || |
Sbjct: 527 aggcagttctggaacaccacctgcgcgttgccgaagatgaagtcgatggtgcccgtgatg 468
Query: 793 cggcagtcgcggaagaactgccgctgcgcgtgcgtgtacagcgtgtcctggtagccgtcg 852
||| |||||| || ||||||| || |||||||||||||||||||||||| ||||||
Sbjct: 467 acgcactcgcggtagtactgccggctcgtgtgcgtgtacagcgtgtcctggtacccgtcg 408
Query: 853 aa 854
||
Sbjct: 407 aa 406
>gb|CW281478.1|CW281478 104_757_11408201_116_35463_077 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11408201, DNA
sequence
Length = 479
Score = 115 bits (58), Expect = 7e-024
Identities = 196/242 (80%)
Strand = Plus / Minus
Query: 613 tccgggtggggctcgatggtgcagttgtgcagcacggtgccgcccacggagcgcttgtcc 672
|||||||| |||||||||||||||||||| | |||||||||||| | || | | | |||
Sbjct: 401 tccgggtgcggctcgatggtgcagttgtggatgacggtgccgcccgccgacctcctctcc 342
Query: 673 cgccgcccctgcgccgtgatgatgttggcctggttcgccatgggcttccggggctggatc 732
|| ||||||||||| | |||||| |||||| ||||| ||| || ||||||
Sbjct: 341 ttgcggccctgcgccgtcacgatgttctgctggttgtccatgcacttgcgcacctggatg 282
Query: 733 aggcagttctgcagcaccacctgggagttgccgaagatgaagtcgatggtgccggtcacc 792
||||||||||| | ||||||||| | ||||||||||||||||||||||||||| || |
Sbjct: 281 aggcagttctggaacaccacctgcgcgttgccgaagatgaagtcgatggtgcccgtgatg 222
Query: 793 cggcagtcgcggaagaactgccgctgcgcgtgcgtgtacagcgtgtcctggtagccgtcg 852
||| |||||| || ||||||| || |||||||||||||||||||||||| ||||||
Sbjct: 221 acgcactcgcggtagtactgccggctcgtgtgcgtgtacagcgtgtcctggtacccgtcg 162
Query: 853 aa 854
||
Sbjct: 161 aa 160
>gb|CL150595.1|CL150595 104_332_10778646_114_31357_198 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10778646, DNA
sequence
Length = 794
Score = 105 bits (53), Expect = 7e-021
Identities = 110/129 (85%)
Strand = Plus / Plus
Query: 726 ctggatcaggcagttctgcagcaccacctgggagttgccgaagatgaagtcgatggtgcc 785
|||||| ||||||||||| | ||||||||| | |||||||||||||||||||||||||||
Sbjct: 36 ctggatgaggcagttctggaacaccacctgcgcgttgccgaagatgaagtcgatggtgcc 95
Query: 786 ggtcacccggcagtcgcggaagaactgccgctgcgcgtgcgtgtacagcgtgtcctggta 845
|| | ||| |||||| || ||||||| || ||||||||||||||||||||||||
Sbjct: 96 cgtgatgacgcactcgcggtagtactgccggctcgtgtgcgtgtacagcgtgtcctggta 155
Query: 846 gccgtcgaa 854
||||||||
Sbjct: 156 cccgtcgaa 164
>gb|CW443774.1|CW443774 fsbb001f164a20k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f164a20, DNA
sequence
Length = 456
Score = 105 bits (53), Expect = 7e-021
Identities = 110/129 (85%)
Strand = Plus / Minus
Query: 726 ctggatcaggcagttctgcagcaccacctgggagttgccgaagatgaagtcgatggtgcc 785
|||||| ||||||||||| | ||||||||| | |||||||||||||||||||||||||||
Sbjct: 415 ctggatgaggcagttctggaacaccacctgcgcgttgccgaagatgaagtcgatggtgcc 356
Query: 786 ggtcacccggcagtcgcggaagaactgccgctgcgcgtgcgtgtacagcgtgtcctggta 845
|| | ||| |||||| || ||||||| || ||||||||||||||||||||||||
Sbjct: 355 cgtgatgacgcactcgcggtagtactgccggctcgtgtgcgtgtacagcgtgtcctggta 296
Query: 846 gccgtcgaa 854
||||||||
Sbjct: 295 cccgtcgaa 287
>gb|CW107343.1|CW107343 104_477_11096531_148_34472_040 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11096531, DNA
sequence
Length = 281
Score = 87.7 bits (44), Expect = 2e-015
Identities = 92/108 (85%)
Strand = Plus / Minus
Query: 747 caccacctgggagttgccgaagatgaagtcgatggtgccggtcacccggcagtcgcggaa 806
||||||||| | ||||||||||||||||||||||||||| || | ||| |||||| |
Sbjct: 279 caccacctgcgcgttgccgaagatgaagtcgatggtgcccgtgatgacgcactcgcggta 220
Query: 807 gaactgccgctgcgcgtgcgtgtacagcgtgtcctggtagccgtcgaa 854
| ||||||| || |||||||||||||||||||||||| ||||||||
Sbjct: 219 gtactgccggctcgtgtgcgtgtacagcgtgtcctggtacccgtcgaa 172
>gb|CW155885.1|CW155885 104_558_11146378_148_36365_037 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11146378, DNA
sequence
Length = 728
Score = 83.8 bits (42), Expect = 2e-014
Identities = 84/98 (85%)
Strand = Plus / Plus
Query: 757 gagttgccgaagatgaagtcgatggtgccggtcacccggcagtcgcggaagaactgccgc 816
|||||||||||||||||||| | |||||| |||| ||||| |||||||||||||||
Sbjct: 589 gagttgccgaagatgaagtccacggtgcccagcacctcgcagttgcggaagaactgccgg 648
Query: 817 tgcgcgtgcgtgtacagcgtgtcctggtagccgtcgaa 854
| ||||||| |||||||||||||||||| || |||||
Sbjct: 649 ttcgcgtgcacgtacagcgtgtcctggtacccctcgaa 686
>gb|CF486088.1|CF486088 POL1_35_D06.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_35_D06_A002 5', mRNA sequence
Length = 576
Score = 83.8 bits (42), Expect = 2e-014
Identities = 84/98 (85%)
Strand = Plus / Minus
Query: 757 gagttgccgaagatgaagtcgatggtgccggtcacccggcagtcgcggaagaactgccgc 816
|||||||||||||||||||| | |||||| |||| ||||| |||||||||||||||
Sbjct: 324 gagttgccgaagatgaagtccacggtgcccagcacctcgcagttgcggaagaactgccgg 265
Query: 817 tgcgcgtgcgtgtacagcgtgtcctggtagccgtcgaa 854
| ||||||| |||||||||||||||||| || |||||
Sbjct: 264 ttcgcgtgcacgtacagcgtgtcctggtacccctcgaa 227
>gb|CW172749.1|CW172749 104_584_11156458_148_36543_045 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11156458, DNA
sequence
Length = 626
Score = 67.9 bits (34), Expect = 1e-009
Identities = 76/90 (84%)
Strand = Plus / Minus
Query: 759 gttgccgaagatgaagtcgatggtgccggtcacccggcagtcgcggaagaactgccgctg 818
||||||||||| |||||||||||||||| | ||||||||||||||||||||| |
Sbjct: 360 gttgccgaagacgaagtcgatggtgccgtagatgtcgcagtcgcggaagaactgccggag 301
Query: 819 cgcgtgcgtgtacagcgtgtcctggtagcc 848
| |||| |||||||||||||||||||||
Sbjct: 300 ggagtgcacgtacagcgtgtcctggtagcc 271
>gb|CW216947.1|CW216947 104_650_11195395_116_37129_080 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11195395, DNA
sequence
Length = 716
Score = 67.9 bits (34), Expect = 1e-009
Identities = 76/90 (84%)
Strand = Plus / Minus
Query: 759 gttgccgaagatgaagtcgatggtgccggtcacccggcagtcgcggaagaactgccgctg 818
||||||||||| |||||||||||||||| | ||||||||||||||||||||| |
Sbjct: 564 gttgccgaagacgaagtcgatggtgccgtagatgtcgcagtcgcggaagaactgccggag 505
Query: 819 cgcgtgcgtgtacagcgtgtcctggtagcc 848
| |||| |||||||||||||||||||||
Sbjct: 504 ggagtgcacgtacagcgtgtcctggtagcc 475
>gb|CW241950.1|CW241950 104_701_11219058_116_37554_073 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11219058, DNA
sequence
Length = 636
Score = 67.9 bits (34), Expect = 1e-009
Identities = 73/86 (84%)
Strand = Plus / Plus
Query: 759 gttgccgaagatgaagtcgatggtgccggtcacccggcagtcgcggaagaactgccgctg 818
||||||||||| |||||| | |||||||| || |||||||| ||| ||| |||||| |
Sbjct: 545 gttgccgaagacgaagtccacggtgccggcgacgcggcagtcccggtagagctgccggag 604
Query: 819 cgcgtgcgtgtacagcgtgtcctggt 844
|| ||||| |||||||||||||||||
Sbjct: 605 cgagtgcgcgtacagcgtgtcctggt 630
>gb|CW241951.1|CW241951 104_701_11219058_148_37553_073 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11219058, DNA
sequence
Length = 563
Score = 67.9 bits (34), Expect = 1e-009
Identities = 73/86 (84%)
Strand = Plus / Minus
Query: 759 gttgccgaagatgaagtcgatggtgccggtcacccggcagtcgcggaagaactgccgctg 818
||||||||||| |||||| | |||||||| || |||||||| ||| ||| |||||| |
Sbjct: 231 gttgccgaagacgaagtccacggtgccggcgacgcggcagtcccggtagagctgccggag 172
Query: 819 cgcgtgcgtgtacagcgtgtcctggt 844
|| ||||| |||||||||||||||||
Sbjct: 171 cgagtgcgcgtacagcgtgtcctggt 146
>gb|CW339306.1|CW339306 104_840_11485203_148_36139_016 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11485203, DNA
sequence
Length = 669
Score = 67.9 bits (34), Expect = 1e-009
Identities = 76/90 (84%)
Strand = Plus / Minus
Query: 759 gttgccgaagatgaagtcgatggtgccggtcacccggcagtcgcggaagaactgccgctg 818
||||||||||| |||||||||||||||| | ||||||||||||||||||||| |
Sbjct: 459 gttgccgaagacgaagtcgatggtgccgtagatgtcgcagtcgcggaagaactgccggag 400
Query: 819 cgcgtgcgtgtacagcgtgtcctggtagcc 848
| |||| |||||||||||||||||||||
Sbjct: 399 ggagtgcacgtacagcgtgtcctggtagcc 370
>gb|CW433383.1|CW433383 fsbb001f148j05f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f148j05, DNA
sequence
Length = 689
Score = 67.9 bits (34), Expect = 1e-009
Identities = 73/86 (84%)
Strand = Plus / Minus
Query: 759 gttgccgaagatgaagtcgatggtgccggtcacccggcagtcgcggaagaactgccgctg 818
||||||||||| |||||| | |||||||| || |||||||| ||| ||| |||||| |
Sbjct: 360 gttgccgaagacgaagtccacggtgccggcgacgcggcagtcccggtagagctgccggag 301
Query: 819 cgcgtgcgtgtacagcgtgtcctggt 844
|| ||||| |||||||||||||||||
Sbjct: 300 cgagtgcgcgtacagcgtgtcctggt 275
>gb|CW121987.1|CW121987 104_500_11110291_116_34665_074 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11110291, DNA
sequence
Length = 563
Score = 65.9 bits (33), Expect = 6e-009
Identities = 63/73 (86%)
Strand = Plus / Minus
Query: 795 gcagtcgcggaagaactgccgctgcgcgtgcgtgtacagcgtgtcctggtagccgtcgaa 854
|||| ||||| |||||||||| | | |||||||||||||||||||||||| | |||||
Sbjct: 506 gcagccgcggtagaactgccggagggagtgcgtgtacagcgtgtcctggtacgcctcgaa 447
Query: 855 ggtgcactggtag 867
| |||||||||||
Sbjct: 446 gctgcactggtag 434
>gb|CW355045.1|CW355045 fsbb001f019i07f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f019i07, DNA
sequence
Length = 717
Score = 65.9 bits (33), Expect = 6e-009
Identities = 63/73 (86%)
Strand = Plus / Minus
Query: 795 gcagtcgcggaagaactgccgctgcgcgtgcgtgtacagcgtgtcctggtagccgtcgaa 854
|||| ||||| |||||||||| | | |||||||||||||||||||||||| | |||||
Sbjct: 143 gcagccgcggtagaactgccggagggagtgcgtgtacagcgtgtcctggtacgcctcgaa 84
Query: 855 ggtgcactggtag 867
| |||||||||||
Sbjct: 83 gctgcactggtag 71
>gb|CW369334.1|CW369334 fsbb001f043l06f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f043l06, DNA
sequence
Length = 712
Score = 65.9 bits (33), Expect = 6e-009
Identities = 63/73 (86%)
Strand = Plus / Minus
Query: 795 gcagtcgcggaagaactgccgctgcgcgtgcgtgtacagcgtgtcctggtagccgtcgaa 854
|||| ||||| |||||||||| | | |||||||||||||||||||||||| | |||||
Sbjct: 366 gcagccgcggtagaactgccggagggagtgcgtgtacagcgtgtcctggtacgcctcgaa 307
Query: 855 ggtgcactggtag 867
| |||||||||||
Sbjct: 306 gctgcactggtag 294
>gb|CW057246.1|CW057246 104_299_10518117_115_30171 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10518117, DNA
sequence
Length = 581
Score = 63.9 bits (32), Expect = 2e-008
Identities = 53/60 (88%)
Strand = Plus / Plus
Query: 795 gcagtcgcggaagaactgccgctgcgcgtgcgtgtacagcgtgtcctggtagccgtcgaa 854
||||| ||||||||||||||| | ||||||| |||||||||||||||||| || |||||
Sbjct: 25 gcagttgcggaagaactgccggttcgcgtgcacgtacagcgtgtcctggtacccctcgaa 84
>gb|CW321706.1|CW321706 104_815_11475696_148_35943_094 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11475696, DNA
sequence
Length = 670
Score = 60.0 bits (30), Expect = 4e-007
Identities = 36/38 (94%)
Strand = Plus / Minus
Query: 451 gcgtagaagagcgtctcgaggccgaagtcgccgttcca 488
|||||||||||||||| || ||||||||||||||||||
Sbjct: 89 gcgtagaagagcgtcttgatgccgaagtcgccgttcca 52
>gb|CD205907.1|CD205907 HS1_19_G06.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_19_G06_A012 3', mRNA sequence
Length = 626
Score = 60.0 bits (30), Expect = 4e-007
Identities = 48/54 (88%)
Strand = Plus / Minus
Query: 795 gcagtcgcggaagaactgccgctgcgcgtgcgtgtacagcgtgtcctggtagcc 848
||||||||||||||||||||| | | |||| |||||||||||||||||||||
Sbjct: 474 gcagtcgcggaagaactgccggagggagtgcacgtacagcgtgtcctggtagcc 421
>gb|CW276959.1|CW276959 104_750_11405768_116_35395_018 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11405768, DNA
sequence
Length = 617
Score = 58.0 bits (29), Expect = 1e-006
Identities = 56/65 (86%)
Strand = Plus / Plus
Query: 447 ctccgcgtagaagagcgtctcgaggccgaagtcgccgttccactcgagccagcccttggg 506
|||| ||||||||||||||| ||| ||||||| |||| |||||||||||| ||| |||
Sbjct: 257 ctccccgtagaagagcgtcttgagcgcgaagtccccgtcccactcgagccaccccctggc 316
Query: 507 gtcga 511
|||||
Sbjct: 317 gtcga 321
Score = 42.1 bits (21), Expect = 0.084
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 759 gttgccgaagatgaagtcgatggtgccgg 787
||||||||||| |||||||| ||||||||
Sbjct: 569 gttgccgaagacgaagtcgacggtgccgg 597
>gb|CW432733.1|CW432733 fsbb001f147j17k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f147j17, DNA
sequence
Length = 201
Score = 58.0 bits (29), Expect = 1e-006
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 613 tccgggtggggctcgatggtgcagttgtgcagcacggtgccgccc 657
|||||||| |||||||||||||||||||| | ||||||||||||
Sbjct: 95 tccgggtgcggctcgatggtgcagttgtggatgacggtgccgccc 139
>gb|CX608981.1|CX608981 ANR1_10_A01.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_10_A01_A002 3', mRNA sequence
Length = 599
Score = 58.0 bits (29), Expect = 1e-006
Identities = 56/65 (86%)
Strand = Plus / Minus
Query: 447 ctccgcgtagaagagcgtctcgaggccgaagtcgccgttccactcgagccagcccttggg 506
|||| ||||||||||||||| ||| ||||||| |||| |||||||||||| ||| |||
Sbjct: 312 ctccccgtagaagagcgtcttgagcgcgaagtccccgtcccactcgagccaccccctggc 253
Query: 507 gtcga 511
|||||
Sbjct: 252 gtcga 248
>gb|CW107342.1|CW107342 104_477_11096531_116_34476_040 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11096531, DNA
sequence
Length = 385
Score = 56.0 bits (28), Expect = 6e-006
Identities = 94/116 (81%)
Strand = Plus / Plus
Query: 276 ctgcggcagcaatcccgggatgaacggcaccccgaacttggggatgaactgctgcccctg 335
||||||||||| ||||||||||| ||||| |||| || |||| | ||||| |||||
Sbjct: 270 ctgcggcagcagccccgggatgaatggcacgccgagctgtgggagccagtgctggccctg 329
Query: 336 gatgaaggtctccacggtgaactccttctgcgcctcctcgtaggtgacggtcttga 391
||||||| ||||||||||| ||| || | |||| | || |||||||| | ||||||
Sbjct: 330 gatgaagctctccacggtgtacttctgcagcgcgtgctggtaggtgatgttcttga 385
>gb|BZ344309.1|BZ344309 hp62c02.b2 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone hp62c02 5', DNA sequence
Length = 663
Score = 54.0 bits (27), Expect = 2e-005
Identities = 72/87 (82%)
Strand = Plus / Plus
Query: 759 gttgccgaagatgaagtcgatggtgccggtcacccggcagtcgcggaagaactgccgctg 818
||||||||||| |||||||| ||||||| || |||||||||| ||||||| || |
Sbjct: 107 gttgccgaagacgaagtcgacggtgccgtagacgtcgcagtcgcggtagaactggcggtt 166
Query: 819 cgcgtgcgtgtacagcgtgtcctggta 845
| ||||| ||||||||||||||||||
Sbjct: 167 ggagtgcgcgtacagcgtgtcctggta 193
>gb|CW039719.1|CW039719 104_272_10505656_115_30390 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10505656, DNA
sequence
Length = 735
Score = 54.0 bits (27), Expect = 2e-005
Identities = 72/87 (82%)
Strand = Plus / Minus
Query: 759 gttgccgaagatgaagtcgatggtgccggtcacccggcagtcgcggaagaactgccgctg 818
||||||||||| |||||||| ||||||| || |||||||||| ||||||| || |
Sbjct: 710 gttgccgaagacgaagtcgacggtgccgtagacgtcgcagtcgcggtagaactggcggtt 651
Query: 819 cgcgtgcgtgtacagcgtgtcctggta 845
| ||||| ||||||||||||||||||
Sbjct: 650 ggagtgcgcgtacagcgtgtcctggta 624
>gb|CW152394.1|CW152394 104_553_11144468_116_36324_070 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11144468, DNA
sequence
Length = 401
Score = 54.0 bits (27), Expect = 2e-005
Identities = 45/51 (88%)
Strand = Plus / Plus
Query: 795 gcagtcgcggaagaactgccgctgcgcgtgcgtgtacagcgtgtcctggta 845
|||| ||||| |||||||||| | | ||||||||||||||||||||||||
Sbjct: 238 gcagccgcggtagaactgccggagggagtgcgtgtacagcgtgtcctggta 288
>gb|CW152395.1|CW152395 104_553_11144468_148_36328_070 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11144468, DNA
sequence
Length = 401
Score = 54.0 bits (27), Expect = 2e-005
Identities = 45/51 (88%)
Strand = Plus / Minus
Query: 795 gcagtcgcggaagaactgccgctgcgcgtgcgtgtacagcgtgtcctggta 845
|||| ||||| |||||||||| | | ||||||||||||||||||||||||
Sbjct: 162 gcagccgcggtagaactgccggagggagtgcgtgtacagcgtgtcctggta 112
>gb|CW172298.1|CW172298 104_583_11156215_116_36533_024 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11156215, DNA
sequence
Length = 613
Score = 54.0 bits (27), Expect = 2e-005
Identities = 45/51 (88%)
Strand = Plus / Minus
Query: 795 gcagtcgcggaagaactgccgctgcgcgtgcgtgtacagcgtgtcctggta 845
|||| ||||| |||||||||| | | ||||||||||||||||||||||||
Sbjct: 452 gcagccgcggtagaactgccggagggagtgcgtgtacagcgtgtcctggta 402
>gb|CW276960.1|CW276960 104_750_11405768_148_35399_018 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11405768, DNA
sequence
Length = 649
Score = 54.0 bits (27), Expect = 2e-005
Identities = 78/95 (82%)
Strand = Plus / Minus
Query: 759 gttgccgaagatgaagtcgatggtgccggtcacccggcagtcgcggaagaactgccgctg 818
||||||||||| |||||||| |||||||| ||| ||| |||||| | | || || |
Sbjct: 642 gttgccgaagacgaagtcgacggtgccggacacgaagcactcgcggtacaggtggcggag 583
Query: 819 cgcgtgcgtgtacagcgtgtcctggtagccgtcga 853
|||||||| |||||| ||||||||||| |||||||
Sbjct: 582 cgcgtgcgcgtacagggtgtcctggtacccgtcga 548
>gb|CW401835.1|CW401835 fsbb001f092n11k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f092n11, DNA
sequence
Length = 257
Score = 54.0 bits (27), Expect = 2e-005
Identities = 66/79 (83%)
Strand = Plus / Minus
Query: 276 ctgcggcagcaatcccgggatgaacggcaccccgaacttggggatgaactgctgcccctg 335
||||||||||| ||||||||||| ||||| |||| || |||| | ||||| |||||
Sbjct: 97 ctgcggcagcagccccgggatgaatggcacgccgagctgtgggagccagtgctggccctg 38
Query: 336 gatgaaggtctccacggtg 354
||||||| |||||||||||
Sbjct: 37 gatgaagctctccacggtg 19
>gb|CW420369.1|CW420369 fsbb001f126k15k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f126k15, DNA
sequence
Length = 706
Score = 54.0 bits (27), Expect = 2e-005
Identities = 72/87 (82%)
Strand = Plus / Minus
Query: 759 gttgccgaagatgaagtcgatggtgccggtcacccggcagtcgcggaagaactgccgctg 818
||||||||||| |||||||| ||||||| || |||||||||| ||||||| || |
Sbjct: 653 gttgccgaagacgaagtcgacggtgccgtagacgtcgcagtcgcggtagaactggcggtt 594
Query: 819 cgcgtgcgtgtacagcgtgtcctggta 845
| ||||| ||||||||||||||||||
Sbjct: 593 ggagtgcgcgtacagcgtgtcctggta 567
>gb|CW339305.1|CW339305 104_840_11485203_116_36138_016 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11485203, DNA
sequence
Length = 626
Score = 52.0 bits (26), Expect = 9e-005
Identities = 74/90 (82%)
Strand = Plus / Plus
Query: 759 gttgccgaagatgaagtcgatggtgccggtcacccggcagtcgcggaagaactgccgctg 818
||||||| ||| |||||||||||||||| || ||| || |||||||||||||| |
Sbjct: 536 gttgccggagacgaagtcgatggtgccgtacatgtcgcactctcggaagaactgccggag 595
Query: 819 cgcgtgcgtgtacagcgtgtcctggtagcc 848
| |||| |||||||||||||||||||||
Sbjct: 596 ggagtgcacgtacagcgtgtcctggtagcc 625
Score = 52.0 bits (26), Expect = 9e-005
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 452 cgtagaagagcgtctcgaggccgaagtcgccgttccactcgagccagccc 501
||||| ||||||| ||||| |||||| ||||| ||||||||||||||||
Sbjct: 232 cgtagtagagcgtgtcgagcgcgaagttgccgtcccactcgagccagccc 281
>gb|AW287387.2|AW287387 LG1_303_C07.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 490
Score = 52.0 bits (26), Expect = 9e-005
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 452 cgtagaagagcgtctcgaggccgaagtcgccgttccactcgagccagccc 501
||||| ||||||| ||||| |||||| ||||| ||||||||||||||||
Sbjct: 268 cgtagtagagcgtgtcgagcgcgaagttgccgtcccactcgagccagccc 219
>gb|CD203710.1|CD203710 HS1_1_D09.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA clone
HS1_1_D09_A012 3', mRNA sequence
Length = 654
Score = 52.0 bits (26), Expect = 9e-005
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 452 cgtagaagagcgtctcgaggccgaagtcgccgttccactcgagccagccc 501
||||| ||||||| ||||| |||||| ||||| ||||||||||||||||
Sbjct: 296 cgtagtagagcgtgtcgagcgcgaagttgccgtcccactcgagccagccc 247
>gb|CD228200.1|CD228200 CCC1_6_B10.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_6_B10_A007 3', mRNA sequence
Length = 639
Score = 52.0 bits (26), Expect = 9e-005
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 452 cgtagaagagcgtctcgaggccgaagtcgccgttccactcgagccagccc 501
||||| ||||||| ||||| |||||| ||||| ||||||||||||||||
Sbjct: 281 cgtagtagagcgtgtcgagcgcgaagttgccgtcccactcgagccagccc 232
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 248,338
Number of Sequences: 832831
Number of extensions: 248338
Number of successful extensions: 73824
Number of sequences better than 0.5: 91
Number of HSP's better than 0.5 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 73596
Number of HSP's gapped (non-prelim): 209
length of query: 867
length of database: 491,359,669
effective HSP length: 20
effective length of query: 847
effective length of database: 474,703,049
effective search space: 402073482503
effective search space used: 402073482503
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)