BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3922840.2.1
(683 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BG240430.1|BG240430 OV1_29_G05.b1_A002 Ovary 1 (OV1) Sor... 404 e-111
gb|BG049459.1|BG049459 OV1_20_C05.g1_A002 Ovary 1 (OV1) Sor... 389 e-106
gb|BG240293.1|BG240293 OV1_20_C05.b1_A002 Ovary 1 (OV1) Sor... 389 e-106
gb|BG239846.1|BG239846 OV1_29_G05.g1_A002 Ovary 1 (OV1) Sor... 337 8e-091
gb|CW029423.1|CW029423 104_257_10499668_114_30401 Sorghum m... 299 2e-079
gb|CW029597.1|CW029597 104_257_10499765_114_30401 Sorghum m... 299 2e-079
gb|CW045294.1|CW045294 104_281_10509471_114_30238 Sorghum m... 299 2e-079
gb|CW106766.1|CW106766 104_476_11096171_148_34462_038 Sorgh... 297 7e-079
gb|CW463869.1|CW463869 fsbb001f212m15k0 Sorghum methylation... 297 7e-079
gb|CW229857.1|CW229857 104_671_11207539_116_37267_074 Sorgh... 291 4e-077
gb|CW036653.1|CW036653 104_268_10503895_115_30382 Sorghum m... 248 6e-064
gb|CW029643.1|CW029643 104_257_10499789_114_30401 Sorghum m... 109 3e-022
gb|BH245603.1|BH245603 pSB1001 S. bicolor BTx623 PstI-diges... 92 8e-017
gb|CW036652.1|CW036652 104_268_10503895_114_30381 Sorghum m... 92 8e-017
gb|CW176059.1|CW176059 104_588_11158285_116_36574_049 Sorgh... 92 8e-017
gb|CW106765.1|CW106765 104_476_11096171_116_34466_038 Sorgh... 90 3e-016
gb|BZ366922.1|BZ366922 id01c02.b1 WGS-SbicolorF (JM107 adap... 74 2e-011
gb|CW132001.1|CW132001 104_515_11115977_148_34794_077 Sorgh... 74 2e-011
gb|CW375671.1|CW375671 fsbb001f053c11k0 Sorghum methylation... 74 2e-011
gb|CW107565.1|CW107565 104_477_11096662_148_34471_081 Sorgh... 56 4e-006
gb|CW356428.1|CW356428 fsbb001f021i03f0 Sorghum methylation... 56 4e-006
gb|BE355933.1|BE355933 DG1_11_G12.g1_A002 Dark Grown 1 (DG1... 56 4e-006
gb|CF481560.1|CF481560 POL1_72_E06.g1_A002 Pollen Sorghum b... 56 4e-006
gb|CF483204.1|CF483204 POL1_12_A09.g1_A002 Pollen Sorghum b... 56 4e-006
gb|CF484250.1|CF484250 POL1_4_C10.b1_A002 Pollen Sorghum bi... 56 4e-006
gb|CF484323.1|CF484323 POL1_4_C10.g1_A002 Pollen Sorghum bi... 56 4e-006
gb|CF484658.1|CF484658 POL1_26_E07.g1_A002 Pollen Sorghum b... 56 4e-006
gb|CF485923.1|CF485923 POL1_34_C10.g1_A002 Pollen Sorghum b... 56 4e-006
gb|CF488807.1|CF488807 POL1_52_G10.b1_A002 Pollen Sorghum b... 56 4e-006
gb|CF489093.1|CF489093 POL1_54_H04.b1_A002 Pollen Sorghum b... 56 4e-006
gb|CF489427.1|CF489427 POL1_57_B10.g1_A002 Pollen Sorghum b... 56 4e-006
gb|CW045295.1|CW045295 104_281_10509471_115_30234 Sorghum m... 46 0.004
gb|CL168403.1|CL168403 104_366_10810792_148_31806_088 Sorgh... 42 0.066
gb|CW301949.1|CW301949 104_786_11464467_116_35662_016 Sorgh... 42 0.066
gb|CW443839.1|CW443839 fsbb001f164c12f0 Sorghum methylation... 42 0.066
gb|BE357918.1|BE357918 DG1_23_F06.b1_A002 Dark Grown 1 (DG1... 42 0.066
gb|BE357990.1|BE357990 DG1_23_F06.g1_A002 Dark Grown 1 (DG1... 42 0.066
gb|BE358689.1|BE358689 DG1_31_E11.b1_A002 Dark Grown 1 (DG1... 42 0.066
gb|BE358567.1|BE358567 DG1_31_E11.g1_A002 Dark Grown 1 (DG1... 42 0.066
gb|BZ335127.1|BZ335127 hx95f10.b1 WGS-SbicolorF (JM107 adap... 40 0.26
gb|CL196176.1|CL196176 104_422_10942885_114_32318_061 Sorgh... 40 0.26
gb|CW022514.1|CW022514 104_161_10431886_5_30007 Sorghum met... 40 0.26
gb|CW216180.1|CW216180 104_648_11194978_116_37120_033 Sorgh... 40 0.26
gb|CW226517.1|CW226517 104_664_11204928_148_37221_088 Sorgh... 40 0.26
gb|CW227967.1|CW227967 104_667_11206101_148_37240_085 Sorgh... 40 0.26
>gb|BG240430.1|BG240430 OV1_29_G05.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 518
Score = 404 bits (204), Expect = e-111
Identities = 251/266 (94%), Gaps = 3/266 (1%)
Strand = Plus / Minus
Query: 279 tcacgggcacttgtgctggccgtcgtgggtcttcatgttggcgtagcaggggcagacgtc 338
||||||||||||||||| ||||| |||||| |||||||||||||||||||||||||||
Sbjct: 389 tcacgggcacttgtgcttgccgttgtgggttgtcatgttggcgtagcaggggcagacgtt 330
Query: 339 ctcgttgccggaggtgcccggcgggacgcagccgcagcgctggcagcaggtgccgcacgc 398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 ctcgttgccggaggtgcccggcgggacgcagccgcagcgctggcagcaggtgccgcacgc 270
Query: 399 cctcaggcacatcttgggccgccccgacttgctgcaccggtacgagcagctcgcgccgca 458
|| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 269 ccgaaggcacatcttgggccgccccgacttgctgcaccggtacgcgcagctcgcgccgca 210
Query: 459 gtcgatggcttcagcctgtccatggggagaagtagtggtctccacgaggagcagcaggac 518
||||||||| ||||||||||||||||| || |||||||||||||||||||| |||||
Sbjct: 209 gtcgatggcctcagcctgtccatgggg---agcagtggtctccacgaggagcacaaggac 153
Query: 519 gacgagcgagagcgagaagagcagcc 544
||||||||||||||||||||||||||
Sbjct: 152 gacgagcgagagcgagaagagcagcc 127
>gb|BG049459.1|BG049459 OV1_20_C05.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 360
Score = 389 bits (196), Expect = e-106
Identities = 250/266 (93%), Gaps = 4/266 (1%)
Strand = Plus / Minus
Query: 279 tcacgggcacttgtgctggccgtcgtgggtcttcatgttggcgtagcaggggcagacgtc 338
||||||||||||||||| ||||| |||||| |||||||||||||||||||||||||||
Sbjct: 296 tcacgggcacttgtgcttgccgttgtgggttgtcatgttggcgtagcaggggcagacgtt 237
Query: 339 ctcgttgccggaggtgcccggcgggacgcagccgcagcgctggcagcaggtgccgcacgc 398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 236 ctcgttgccggaggtgcccggcgggacgcagccgcagcgctggcagcaggtgccgcacgc 177
Query: 399 cctcaggcacatcttgggccgccccgacttgctgcaccggtacgagcagctcgcgccgca 458
|| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 176 ccgaaggcacatcttgggccgccccgacttgctgcaccggtacgcgcagctcgcgccgca 117
Query: 459 gtcgatggcttcagcctgtccatggggagaagtagtggtctccacgaggagcagcaggac 518
||||||||| ||||||||||||||||| || |||||||||||||| ||||| |||||
Sbjct: 116 gtcgatggcctcagcctgtccatgggg---agcagtggtctccacga-gagcacaaggac 61
Query: 519 gacgagcgagagcgagaagagcagcc 544
||||||||||||||||||||||||||
Sbjct: 60 gacgagcgagagcgagaagagcagcc 35
>gb|BG240293.1|BG240293 OV1_20_C05.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 461
Score = 389 bits (196), Expect = e-106
Identities = 250/266 (93%), Gaps = 4/266 (1%)
Strand = Plus / Minus
Query: 279 tcacgggcacttgtgctggccgtcgtgggtcttcatgttggcgtagcaggggcagacgtc 338
||||||||||||||||| ||||| |||||| |||||||||||||||||||||||||||
Sbjct: 399 tcacgggcacttgtgcttgccgttgtgggttgtcatgttggcgtagcaggggcagacgtt 340
Query: 339 ctcgttgccggaggtgcccggcgggacgcagccgcagcgctggcagcaggtgccgcacgc 398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 ctcgttgccggaggtgcccggcgggacgcagccgcagcgctggcagcaggtgccgcacgc 280
Query: 399 cctcaggcacatcttgggccgccccgacttgctgcaccggtacgagcagctcgcgccgca 458
|| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 279 ccgaaggcacatcttgggccgccccgacttgctgcaccggtacgcgcagctcgcgccgca 220
Query: 459 gtcgatggcttcagcctgtccatggggagaagtagtggtctccacgaggagcagcaggac 518
||||||||| ||||||||||||||||| || |||||||||||||| ||||| |||||
Sbjct: 219 gtcgatggcctcagcctgtccatgggg---agcagtggtctccacga-gagcacaaggac 164
Query: 519 gacgagcgagagcgagaagagcagcc 544
||||||||||||||||||||||||||
Sbjct: 163 gacgagcgagagcgagaagagcagcc 138
>gb|BG239846.1|BG239846 OV1_29_G05.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 467
Score = 337 bits (170), Expect = 8e-091
Identities = 199/209 (95%)
Strand = Plus / Minus
Query: 279 tcacgggcacttgtgctggccgtcgtgggtcttcatgttggcgtagcaggggcagacgtc 338
||||||||||||||||| ||||| |||||| ||||||||||||| |||||||||||||
Sbjct: 218 tcacgggcacttgtgcttgccgttgtgggttgtcatgttggcgtancaggggcagacgtt 159
Query: 339 ctcgttgccggaggtgcccggcgggacgcagccgcagcgctggcagcaggtgccgcacgc 398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 158 ctcgttgccggaggtgcccggcgggacgcagccgcagcgctggcagcaggtgccgcacgc 99
Query: 399 cctcaggcacatcttgggccgccccgacttgctgcaccggtacgagcagctcgcgccgca 458
|| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 98 ccgaaggcacatcttgggccgccccgacttgctgcaccggtacgcgcagctcgcgccgca 39
Query: 459 gtcgatggcttcagcctgtccatggggag 487
||||||||| |||||||||||||||||||
Sbjct: 38 gtcgatggcctcagcctgtccatggggag 10
>gb|CW029423.1|CW029423 104_257_10499668_114_30401 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10499668, DNA
sequence
Length = 684
Score = 299 bits (151), Expect = 2e-079
Identities = 175/183 (95%)
Strand = Plus / Minus
Query: 279 tcacgggcacttgtgctggccgtcgtgggtcttcatgttggcgtagcaggggcagacgtc 338
||||||||||||||||| ||||| |||||| |||||||||||||||||||||||||||
Sbjct: 470 tcacgggcacttgtgcttgccgttgtgggttgtcatgttggcgtagcaggggcagacgtt 411
Query: 339 ctcgttgccggaggtgcccggcgggacgcagccgcagcgctggcagcaggtgccgcacgc 398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 ctcgttgccggaggtgcccggcgggacgcagccgcagcgctggcagcaggtgccgcacgc 351
Query: 399 cctcaggcacatcttgggccgccccgacttgctgcaccggtacgagcagctcgcgccgca 458
|| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 350 ccgaaggcacatcttgggccgccccgacttgctgcaccggtacgcgcagctcgcgccgca 291
Query: 459 gtc 461
|||
Sbjct: 290 gtc 288
Score = 46.1 bits (23), Expect = 0.004
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 461 cgatggcttcagcctgtccatggggag 487
||||||| |||||||||||||||||||
Sbjct: 145 cgatggcctcagcctgtccatggggag 119
>gb|CW029597.1|CW029597 104_257_10499765_114_30401 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10499765, DNA
sequence
Length = 839
Score = 299 bits (151), Expect = 2e-079
Identities = 175/183 (95%)
Strand = Plus / Minus
Query: 279 tcacgggcacttgtgctggccgtcgtgggtcttcatgttggcgtagcaggggcagacgtc 338
||||||||||||||||| ||||| |||||| |||||||||||||||||||||||||||
Sbjct: 569 tcacgggcacttgtgcttgccgttgtgggttgtcatgttggcgtagcaggggcagacgtt 510
Query: 339 ctcgttgccggaggtgcccggcgggacgcagccgcagcgctggcagcaggtgccgcacgc 398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 ctcgttgccggaggtgcccggcgggacgcagccgcagcgctggcagcaggtgccgcacgc 450
Query: 399 cctcaggcacatcttgggccgccccgacttgctgcaccggtacgagcagctcgcgccgca 458
|| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 449 ccgaaggcacatcttgggccgccccgacttgctgcaccggtacgcgcagctcgcgccgca 390
Query: 459 gtc 461
|||
Sbjct: 389 gtc 387
Score = 67.9 bits (34), Expect = 1e-009
Identities = 40/42 (95%)
Strand = Plus / Minus
Query: 498 ctccacgaggagcagcaggacgacgagcgagagcgagaagag 539
|||||||||||||| ||||||||||||||||||||||||||
Sbjct: 42 ctccacgaggagcacaaggacgacgagcgagagcgagaagag 1
Score = 46.1 bits (23), Expect = 0.004
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 461 cgatggcttcagcctgtccatggggag 487
||||||| |||||||||||||||||||
Sbjct: 244 cgatggcctcagcctgtccatggggag 218
>gb|CW045294.1|CW045294 104_281_10509471_114_30238 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10509471, DNA
sequence
Length = 648
Score = 299 bits (151), Expect = 2e-079
Identities = 175/183 (95%)
Strand = Plus / Plus
Query: 279 tcacgggcacttgtgctggccgtcgtgggtcttcatgttggcgtagcaggggcagacgtc 338
||||||||||||||||| ||||| |||||| |||||||||||||||||||||||||||
Sbjct: 385 tcacgggcacttgtgcttgccgttgtgggttgtcatgttggcgtagcaggggcagacgtt 444
Query: 339 ctcgttgccggaggtgcccggcgggacgcagccgcagcgctggcagcaggtgccgcacgc 398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctcgttgccggaggtgcccggcgggacgcagccgcagcgctggcagcaggtgccgcacgc 504
Query: 399 cctcaggcacatcttgggccgccccgacttgctgcaccggtacgagcagctcgcgccgca 458
|| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 505 ccgaaggcacatcttgggccgccccgacttgctgcaccggtacgcgcagctcgcgccgca 564
Query: 459 gtc 461
|||
Sbjct: 565 gtc 567
>gb|CW106766.1|CW106766 104_476_11096171_148_34462_038 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11096171, DNA
sequence
Length = 539
Score = 297 bits (150), Expect = 7e-079
Identities = 179/189 (94%), Gaps = 6/189 (3%)
Strand = Plus / Plus
Query: 279 tcacgggcacttgtgctggccgtcgtgggtcttcatgttggcgtagcaggggcagacg-- 336
||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct: 89 tcacgggcacttgtgcttgccgtcgtgggttgtcatgttggcgtagcaggggcagacgac 148
Query: 337 ----tcctcgttgccggaggtgcccggcgggacgcagccgcagcgctggcagcaggtgcc 392
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 149 gacgtcctcgttgccggaggtgcccggcgggacgcagccgcagcgctggcagcaggtgcc 208
Query: 393 gcacgccctcaggcacatcttgggccgccccgacttgctgcaccggtacgagcagctcgc 452
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 209 gcacgccctcaggcacatcttgggccgccccgaattgctgcaccggtacgagcagctcgc 268
Query: 453 gccgcagtc 461
|||||||||
Sbjct: 269 gccgcagtc 277
Score = 46.1 bits (23), Expect = 0.004
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 461 cgatggcttcagcctgtccatggggag 487
||||||| |||||||||||||||||||
Sbjct: 426 cgatggcgtcagcctgtccatggggag 452
>gb|CW463869.1|CW463869 fsbb001f212m15k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f212m15, DNA
sequence
Length = 598
Score = 297 bits (150), Expect = 7e-079
Identities = 179/189 (94%), Gaps = 6/189 (3%)
Strand = Plus / Plus
Query: 279 tcacgggcacttgtgctggccgtcgtgggtcttcatgttggcgtagcaggggcagacg-- 336
||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct: 209 tcacgggcacttgtgcttgccgtcgtgggttgtcatgttggcgtagcaggggcagacgac 268
Query: 337 ----tcctcgttgccggaggtgcccggcgggacgcagccgcagcgctggcagcaggtgcc 392
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 gacgtcctcgttgccggaggtgcccggcgggacgcagccgcagcgctggcagcaggtgcc 328
Query: 393 gcacgccctcaggcacatcttgggccgccccgacttgctgcaccggtacgagcagctcgc 452
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 329 gcacgccctcaggcacatcttgggccgccccgaattgctgcaccggtacgagcagctcgc 388
Query: 453 gccgcagtc 461
|||||||||
Sbjct: 389 gccgcagtc 397
Score = 46.1 bits (23), Expect = 0.004
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 461 cgatggcttcagcctgtccatggggag 487
||||||| |||||||||||||||||||
Sbjct: 546 cgatggcgtcagcctgtccatggggag 572
>gb|CW229857.1|CW229857 104_671_11207539_116_37267_074 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11207539, DNA
sequence
Length = 675
Score = 291 bits (147), Expect = 4e-077
Identities = 174/183 (95%)
Strand = Plus / Plus
Query: 279 tcacgggcacttgtgctggccgtcgtgggtcttcatgttggcgtagcaggggcagacgtc 338
||||||||||||||||| ||||| |||||| |||||||||||||||||||||||||||
Sbjct: 225 tcacgggcacttgtgcttgccgttgtgggttgtcatgttggcgtagcaggggcagacgtt 284
Query: 339 ctcgttgccggaggtgcccggcgggacgcagccgcagcgctggcagcaggtgccgcacgc 398
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 285 ctcgttgccggaggtgcccggcgggacgcaaccgcagcgctggcagcaggtgccgcacgc 344
Query: 399 cctcaggcacatcttgggccgccccgacttgctgcaccggtacgagcagctcgcgccgca 458
|| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 345 ccgaaggcacatcttgggccgccccgacttgctgcaccggtacgcgcagctcgcgccgca 404
Query: 459 gtc 461
|||
Sbjct: 405 gtc 407
Score = 46.1 bits (23), Expect = 0.004
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 461 cgatggcttcagcctgtccatggggag 487
||||||| |||||||||||||||||||
Sbjct: 550 cgatggcctcagcctgtccatggggag 576
>gb|CW036653.1|CW036653 104_268_10503895_115_30382 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10503895, DNA
sequence
Length = 588
Score = 248 bits (125), Expect = 6e-064
Identities = 128/129 (99%)
Strand = Plus / Plus
Query: 333 gacgtcctcgttgccggaggtgcccggcgggacgcagccgcagcgctggcagcaggtgcc 392
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7 gacgtcctcgttgccggaggtgcccggcgggacgcagccgcagcgctggcagcaggtgcc 66
Query: 393 gcacgccctcaggcacatcttgggccgccccgacttgctgcaccggtacgagcagctcgc 452
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 67 gcacgccctcaggcacatcttgggccgccccgaattgctgcaccggtacgagcagctcgc 126
Query: 453 gccgcagtc 461
|||||||||
Sbjct: 127 gccgcagtc 135
Score = 91.7 bits (46), Expect = 8e-017
Identities = 69/76 (90%), Gaps = 3/76 (3%)
Strand = Plus / Plus
Query: 498 ctccacgaggagcagcaggacgacgagcgagagcgagaagagcagcctgc---tgctcgc 554
||||||||||||||| ||||||||||||||||| |||||||||||||||| |||| ||
Sbjct: 441 ctccacgaggagcaggaggacgacgagcgagagggagaagagcagcctgctggtgctggc 500
Query: 555 cttggccatggtggaa 570
||| ||||||||||||
Sbjct: 501 cttagccatggtggaa 516
Score = 46.1 bits (23), Expect = 0.004
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 461 cgatggcttcagcctgtccatggggag 487
||||||| |||||||||||||||||||
Sbjct: 284 cgatggcgtcagcctgtccatggggag 310
>gb|CW029643.1|CW029643 104_257_10499789_114_30401 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10499789, DNA
sequence
Length = 462
Score = 109 bits (55), Expect = 3e-022
Identities = 97/111 (87%)
Strand = Plus / Minus
Query: 279 tcacgggcacttgtgctggccgtcgtgggtcttcatgttggcgtagcaggggcagacgtc 338
|||||||||| ||||| |||| ||||||| ||||||||||||||||| ||||| |||
Sbjct: 340 tcacgggcaccagtgctttccgtggtgggtcgtcatgttggcgtagcagcggcagtcgtt 281
Query: 339 ctcgttgccggaggtgcccggcgggacgcagccgcagcgctggcagcaggt 389
||||||||||||||| || |||||||||||| |||||||| |||||||||
Sbjct: 280 ttcgttgccggaggtgacctgcgggacgcagcggcagcgctcgcagcaggt 230
>gb|BH245603.1|BH245603 pSB1001 S. bicolor BTx623 PstI-digested total genomic DNA library
Sorghum bicolor genomic clone pSB1001 similar to
GAST-like gene product; regulation of petiole
development (AAB97006), DNA sequence
Length = 618
Score = 91.7 bits (46), Expect = 8e-017
Identities = 69/76 (90%), Gaps = 3/76 (3%)
Strand = Plus / Minus
Query: 498 ctccacgaggagcagcaggacgacgagcgagagcgagaagagcagcctgc---tgctcgc 554
||||||||||||||| ||||||||||||||||| |||||||||||||||| |||| ||
Sbjct: 495 ctccacgaggagcaggaggacgacgagcgagagggagaagagcagcctgctggtgctggc 436
Query: 555 cttggccatggtggaa 570
||| ||||||||||||
Sbjct: 435 cttagccatggtggaa 420
>gb|CW036652.1|CW036652 104_268_10503895_114_30381 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10503895, DNA
sequence
Length = 718
Score = 91.7 bits (46), Expect = 8e-017
Identities = 69/76 (90%), Gaps = 3/76 (3%)
Strand = Plus / Minus
Query: 498 ctccacgaggagcagcaggacgacgagcgagagcgagaagagcagcctgc---tgctcgc 554
||||||||||||||| ||||||||||||||||| |||||||||||||||| |||| ||
Sbjct: 635 ctccacgaggagcaggaggacgacgagcgagagggagaagagcagcctgctggtgctggc 576
Query: 555 cttggccatggtggaa 570
||| ||||||||||||
Sbjct: 575 cttagccatggtggaa 560
>gb|CW176059.1|CW176059 104_588_11158285_116_36574_049 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11158285, DNA
sequence
Length = 697
Score = 91.7 bits (46), Expect = 8e-017
Identities = 69/76 (90%), Gaps = 3/76 (3%)
Strand = Plus / Plus
Query: 498 ctccacgaggagcagcaggacgacgagcgagagcgagaagagcagcctgc---tgctcgc 554
||||||||||||||| ||||||||||||||||| |||||||||||||||| |||| ||
Sbjct: 33 ctccacgaggagcaggaggacgacgagcgagagggagaagagcagcctgctggtgctggc 92
Query: 555 cttggccatggtggaa 570
||| ||||||||||||
Sbjct: 93 cttagccatggtggaa 108
>gb|CW106765.1|CW106765 104_476_11096171_116_34466_038 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11096171, DNA
sequence
Length = 555
Score = 89.7 bits (45), Expect = 3e-016
Identities = 48/49 (97%)
Strand = Plus / Minus
Query: 413 tgggccgccccgacttgctgcaccggtacgagcagctcgcgccgcagtc 461
||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 555 tgggccgccccgaattgctgcaccggtacgagcagctcgcgccgcagtc 507
Score = 87.7 bits (44), Expect = 1e-015
Identities = 50/52 (96%)
Strand = Plus / Minus
Query: 498 ctccacgaggagcagcaggacgacgagcgagagcgagaagagcagcctgctg 549
||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct: 201 ctccacgaggagcaggaggacgacgagcgagagggagaagagcagcctgctg 150
Score = 46.1 bits (23), Expect = 0.004
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 461 cgatggcttcagcctgtccatggggag 487
||||||| |||||||||||||||||||
Sbjct: 358 cgatggcgtcagcctgtccatggggag 332
>gb|BZ366922.1|BZ366922 id01c02.b1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone id01c02 5', DNA sequence
Length = 521
Score = 73.8 bits (37), Expect = 2e-011
Identities = 73/85 (85%)
Strand = Plus / Minus
Query: 318 ggcgtagcaggggcagacgtcctcgttgccggaggtgcccggcgggacgcagccgcagcg 377
||||||||||||||||||||| | ||| |||| |||||||||||| |||||| ||||||
Sbjct: 194 ggcgtagcaggggcagacgtcgtggttcccggcggtgcccggcggcacgcagttgcagcg 135
Query: 378 ctggcagcaggtgccgcacgccctc 402
|||||||| ||||||||||||
Sbjct: 134 ggcgcagcaggacccgcacgccctc 110
>gb|CW132001.1|CW132001 104_515_11115977_148_34794_077 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11115977, DNA
sequence
Length = 611
Score = 73.8 bits (37), Expect = 2e-011
Identities = 73/85 (85%)
Strand = Plus / Plus
Query: 318 ggcgtagcaggggcagacgtcctcgttgccggaggtgcccggcgggacgcagccgcagcg 377
||||||||||||||||||||| | ||| |||| |||||||||||| |||||| ||||||
Sbjct: 269 ggcgtagcaggggcagacgtcgtggttcccggcggtgcccggcggcacgcagttgcagcg 328
Query: 378 ctggcagcaggtgccgcacgccctc 402
|||||||| ||||||||||||
Sbjct: 329 ggcgcagcaggacccgcacgccctc 353
>gb|CW375671.1|CW375671 fsbb001f053c11k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f053c11, DNA
sequence
Length = 534
Score = 73.8 bits (37), Expect = 2e-011
Identities = 73/85 (85%)
Strand = Plus / Minus
Query: 318 ggcgtagcaggggcagacgtcctcgttgccggaggtgcccggcgggacgcagccgcagcg 377
||||||||||||||||||||| | ||| |||| |||||||||||| |||||| ||||||
Sbjct: 441 ggcgtagcaggggcagacgtcgtggttcccggcggtgcccggcggcacgcagttgcagcg 382
Query: 378 ctggcagcaggtgccgcacgccctc 402
|||||||| ||||||||||||
Sbjct: 381 ggcgcagcaggacccgcacgccctc 357
>gb|CW107565.1|CW107565 104_477_11096662_148_34471_081 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11096662, DNA
sequence
Length = 551
Score = 56.0 bits (28), Expect = 4e-006
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 321 gtagcaggggcagacgtcctcgttgccggaggtgcccggcgggacgca 368
||||||||||||| ||||| ||||||| ||||||||||||| |||||
Sbjct: 170 gtagcaggggcaggtgtccttgttgccgtaggtgcccggcggcacgca 217
>gb|CW356428.1|CW356428 fsbb001f021i03f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f021i03, DNA
sequence
Length = 676
Score = 56.0 bits (28), Expect = 4e-006
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 321 gtagcaggggcagacgtcctcgttgccggaggtgcccggcgggacgca 368
||||||||||||| ||||| ||||||| ||||||||||||| |||||
Sbjct: 524 gtagcaggggcaggtgtccttgttgccgtaggtgcccggcggcacgca 571
>gb|BE355933.1|BE355933 DG1_11_G12.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 599
Score = 56.0 bits (28), Expect = 4e-006
Identities = 43/48 (89%)
Strand = Plus / Minus
Query: 321 gtagcaggggcagacgtcctcgttgccggaggtgcccggcgggacgca 368
||||||||||||| ||||| ||||||| ||||||||||||| |||||
Sbjct: 353 gtagcaggggcaggtgtccttgttgccgtaggtgcccggcggcacgca 306
>gb|CF481560.1|CF481560 POL1_72_E06.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_72_E06_A002 5', mRNA sequence
Length = 628
Score = 56.0 bits (28), Expect = 4e-006
Identities = 43/48 (89%)
Strand = Plus / Minus
Query: 321 gtagcaggggcagacgtcctcgttgccggaggtgcccggcgggacgca 368
||||||||||||| ||||| ||||||| ||||||||||||| |||||
Sbjct: 452 gtagcaggggcaggtgtccttgttgccgtaggtgcccggcggcacgca 405
>gb|CF483204.1|CF483204 POL1_12_A09.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_12_A09_A002 5', mRNA sequence
Length = 490
Score = 56.0 bits (28), Expect = 4e-006
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 321 gtagcaggggcagacgtcctcgttgccggaggtgcccggcgggacgca 368
||||||||||||| ||||| ||||||| ||||||||||||| |||||
Sbjct: 285 gtagcaggggcaggtgtccttgttgccgtaggtgcccggcggcacgca 332
>gb|CF484250.1|CF484250 POL1_4_C10.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_4_C10_A002 3', mRNA sequence
Length = 576
Score = 56.0 bits (28), Expect = 4e-006
Identities = 43/48 (89%)
Strand = Plus / Minus
Query: 321 gtagcaggggcagacgtcctcgttgccggaggtgcccggcgggacgca 368
||||||||||||| ||||| ||||||| ||||||||||||| |||||
Sbjct: 319 gtagcaggggcaggtgtccttgttgccgtaggtgcccggcggcacgca 272
>gb|CF484323.1|CF484323 POL1_4_C10.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_4_C10_A002 5', mRNA sequence
Length = 626
Score = 56.0 bits (28), Expect = 4e-006
Identities = 43/48 (89%)
Strand = Plus / Minus
Query: 321 gtagcaggggcagacgtcctcgttgccggaggtgcccggcgggacgca 368
||||||||||||| ||||| ||||||| ||||||||||||| |||||
Sbjct: 450 gtagcaggggcaggtgtccttgttgccgtaggtgcccggcggcacgca 403
>gb|CF484658.1|CF484658 POL1_26_E07.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_26_E07_A002 5', mRNA sequence
Length = 532
Score = 56.0 bits (28), Expect = 4e-006
Identities = 43/48 (89%)
Strand = Plus / Minus
Query: 321 gtagcaggggcagacgtcctcgttgccggaggtgcccggcgggacgca 368
||||||||||||| ||||| ||||||| ||||||||||||| |||||
Sbjct: 459 gtagcaggggcaggtgtccttgttgccgtaggtgcccggcggcacgca 412
>gb|CF485923.1|CF485923 POL1_34_C10.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_34_C10_A002 5', mRNA sequence
Length = 521
Score = 56.0 bits (28), Expect = 4e-006
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 321 gtagcaggggcagacgtcctcgttgccggaggtgcccggcgggacgca 368
||||||||||||| ||||| ||||||| ||||||||||||| |||||
Sbjct: 285 gtagcaggggcaggtgtccttgttgccgtaggtgcccggcggcacgca 332
>gb|CF488807.1|CF488807 POL1_52_G10.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_52_G10_A002 3', mRNA sequence
Length = 617
Score = 56.0 bits (28), Expect = 4e-006
Identities = 43/48 (89%)
Strand = Plus / Minus
Query: 321 gtagcaggggcagacgtcctcgttgccggaggtgcccggcgggacgca 368
||||||||||||| ||||| ||||||| ||||||||||||| |||||
Sbjct: 387 gtagcaggggcaggtgtccttgttgccgtaggtgcccggcggcacgca 340
>gb|CF489093.1|CF489093 POL1_54_H04.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_54_H04_A002 3', mRNA sequence
Length = 561
Score = 56.0 bits (28), Expect = 4e-006
Identities = 43/48 (89%)
Strand = Plus / Minus
Query: 321 gtagcaggggcagacgtcctcgttgccggaggtgcccggcgggacgca 368
||||||||||||| ||||| ||||||| ||||||||||||| |||||
Sbjct: 304 gtagcaggggcaggtgtccttgttgccgtaggtgcccggcggcacgca 257
>gb|CF489427.1|CF489427 POL1_57_B10.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_57_B10_A002 5', mRNA sequence
Length = 713
Score = 56.0 bits (28), Expect = 4e-006
Identities = 43/48 (89%)
Strand = Plus / Minus
Query: 321 gtagcaggggcagacgtcctcgttgccggaggtgcccggcgggacgca 368
||||||||||||| ||||| ||||||| ||||||||||||| |||||
Sbjct: 447 gtagcaggggcaggtgtccttgttgccgtaggtgcccggcggcacgca 400
>gb|CW045295.1|CW045295 104_281_10509471_115_30234 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10509471, DNA
sequence
Length = 539
Score = 46.1 bits (23), Expect = 0.004
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 498 ctccacgaggagcagcaggacgacgagcgagagcgagaagagcagcc 544
||||| |||||||| ||||||| ||| ||||| |||||||||||||
Sbjct: 297 ctccatgaggagcacaaggacgatgagtgagagtgagaagagcagcc 251
>gb|CL168403.1|CL168403 104_366_10810792_148_31806_088 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10810792, DNA
sequence
Length = 737
Score = 42.1 bits (21), Expect = 0.066
Identities = 42/49 (85%)
Strand = Plus / Minus
Query: 321 gtagcaggggcagacgtcctcgttgccggaggtgcccggcgggacgcag 369
||||||||||||| || ||| ||||||| || ||||||||| ||||||
Sbjct: 270 gtagcaggggcaggcgcccttgttgccgtagaagcccggcggcacgcag 222
>gb|CW301949.1|CW301949 104_786_11464467_116_35662_016 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11464467, DNA
sequence
Length = 661
Score = 42.1 bits (21), Expect = 0.066
Identities = 42/49 (85%)
Strand = Plus / Minus
Query: 321 gtagcaggggcagacgtcctcgttgccggaggtgcccggcgggacgcag 369
||||||||||||| || ||| ||||||| || ||||||||| ||||||
Sbjct: 585 gtagcaggggcaggcgcccttgttgccgtagaagcccggcggcacgcag 537
>gb|CW443839.1|CW443839 fsbb001f164c12f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f164c12, DNA
sequence
Length = 721
Score = 42.1 bits (21), Expect = 0.066
Identities = 42/49 (85%)
Strand = Plus / Minus
Query: 321 gtagcaggggcagacgtcctcgttgccggaggtgcccggcgggacgcag 369
||||||||||||| || ||| ||||||| || ||||||||| ||||||
Sbjct: 301 gtagcaggggcaggcgcccttgttgccgtagaagcccggcggcacgcag 253
>gb|BE357918.1|BE357918 DG1_23_F06.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 650
Score = 42.1 bits (21), Expect = 0.066
Identities = 42/49 (85%)
Strand = Plus / Minus
Query: 321 gtagcaggggcagacgtcctcgttgccggaggtgcccggcgggacgcag 369
||||||||||||| || ||| ||||||| || ||||||||| ||||||
Sbjct: 346 gtagcaggggcaggcgcccttgttgccgtagaagcccggcggcacgcag 298
>gb|BE357990.1|BE357990 DG1_23_F06.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 684
Score = 42.1 bits (21), Expect = 0.066
Identities = 42/49 (85%)
Strand = Plus / Minus
Query: 321 gtagcaggggcagacgtcctcgttgccggaggtgcccggcgggacgcag 369
||||||||||||| || ||| ||||||| || ||||||||| ||||||
Sbjct: 276 gtagcaggggcaggcgcccttgttgccgtagaagcccggcggcacgcag 228
>gb|BE358689.1|BE358689 DG1_31_E11.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 551
Score = 42.1 bits (21), Expect = 0.066
Identities = 42/49 (85%)
Strand = Plus / Minus
Query: 321 gtagcaggggcagacgtcctcgttgccggaggtgcccggcgggacgcag 369
||||||||||||| || ||| ||||||| || ||||||||| ||||||
Sbjct: 350 gtagcaggggcaggcgcccttgttgccgtagaagcccggcggcacgcag 302
>gb|BE358567.1|BE358567 DG1_31_E11.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 631
Score = 42.1 bits (21), Expect = 0.066
Identities = 42/49 (85%)
Strand = Plus / Minus
Query: 321 gtagcaggggcagacgtcctcgttgccggaggtgcccggcgggacgcag 369
||||||||||||| || ||| ||||||| || ||||||||| ||||||
Sbjct: 223 gtagcaggggcaggcgcccttgttgccgtagaagcccggcggcacgcag 175
>gb|BZ335127.1|BZ335127 hx95f10.b1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone hx95f10 5', DNA sequence
Length = 670
Score = 40.1 bits (20), Expect = 0.26
Identities = 41/48 (85%)
Strand = Plus / Plus
Query: 321 gtagcaggggcagacgtcctcgttgccggaggtgcccggcgggacgca 368
||||||||||||| || || ||||||| ||||||||| ||| |||||
Sbjct: 322 gtagcaggggcaggtgttcttgttgccgtaggtgcccgccggcacgca 369
>gb|CL196176.1|CL196176 104_422_10942885_114_32318_061 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10942885, DNA
sequence
Length = 498
Score = 40.1 bits (20), Expect = 0.26
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 503 cgaggagcagcaggacgacgagcgagagcgag 534
||||||||||||||| || ||||||| |||||
Sbjct: 119 cgaggagcagcaggaggaggagcgagcgcgag 150
>gb|CW022514.1|CW022514 104_161_10431886_5_30007 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10431886, DNA
sequence
Length = 578
Score = 40.1 bits (20), Expect = 0.26
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 512 gcaggacgacgagcgagagcgaga 535
||||||||||||||||| ||||||
Sbjct: 424 gcaggacgacgagcgagcgcgaga 447
>gb|CW216180.1|CW216180 104_648_11194978_116_37120_033 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11194978, DNA
sequence
Length = 594
Score = 40.1 bits (20), Expect = 0.26
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 503 cgaggagcagcaggacgacgagcgagagcgag 534
||||||||||||||| || ||||||| |||||
Sbjct: 353 cgaggagcagcaggaggaggagcgagcgcgag 322
>gb|CW226517.1|CW226517 104_664_11204928_148_37221_088 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11204928, DNA
sequence
Length = 679
Score = 40.1 bits (20), Expect = 0.26
Identities = 41/48 (85%)
Strand = Plus / Plus
Query: 321 gtagcaggggcagacgtcctcgttgccggaggtgcccggcgggacgca 368
||||||||||||| || || ||||||| ||||||||| ||| |||||
Sbjct: 95 gtagcaggggcaggtgttcttgttgccgtaggtgcccgccggcacgca 142
>gb|CW227967.1|CW227967 104_667_11206101_148_37240_085 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11206101, DNA
sequence
Length = 654
Score = 40.1 bits (20), Expect = 0.26
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 206 gtagtactcctatatatgta 225
||||||||||||||||||||
Sbjct: 171 gtagtactcctatatatgta 152
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 232,205
Number of Sequences: 832831
Number of extensions: 232205
Number of successful extensions: 65973
Number of sequences better than 0.5: 45
Number of HSP's better than 0.5 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 65884
Number of HSP's gapped (non-prelim): 80
length of query: 683
length of database: 491,359,669
effective HSP length: 19
effective length of query: 664
effective length of database: 475,535,880
effective search space: 315755824320
effective search space used: 315755824320
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)