BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3871923.2.1
(1030 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BI074601.1|BI074601 IP1_13_E09.b1_A002 Immature pannicle... 741 0.0
gb|CF428141.1|CF428141 PH1_13_H04.b1_A002 Phosphorous-defic... 652 0.0
gb|BM324567.1|BM324567 PIC1_32_H03.b1_A002 Pathogen-infecte... 638 0.0
gb|CD461475.1|CD461475 SA1_32_F07.b1_A002 Salicylic acid-tr... 609 e-172
gb|CD427423.1|CD427423 SA1_30_A11.g1_A002 Salicylic acid-tr... 535 e-150
gb|BM329056.1|BM329056 PIC1_32_H03.g1_A002 Pathogen-infecte... 531 e-149
gb|BZ338770.1|BZ338770 ia97g11.g1 WGS-SbicolorF (JM107 adap... 460 e-127
gb|CW146290.1|CW146290 104_539_11138914_148_34987_045 Sorgh... 460 e-127
gb|CW381902.1|CW381902 fsbb001f063i11f0 Sorghum methylation... 460 e-127
gb|CD214110.1|CD214110 HS1_70_B04.b1_A012 Heat-shocked seed... 418 e-115
gb|BI074285.1|BI074285 IP1_13_E09.g1_A002 Immature pannicle... 410 e-112
gb|BI075448.1|BI075448 IP1_20_F08.b1_A002 Immature pannicle... 410 e-112
gb|CN150318.1|CN150318 WOUND1_68_H05.b1_A002 Wounded leaves... 402 e-110
gb|CW316864.1|CW316864 104_808_11473115_148_35855_040 Sorgh... 371 e-101
gb|CW170788.1|CW170788 104_581_11155395_116_36517_010 Sorgh... 365 5e-099
gb|CW381903.1|CW381903 fsbb001f063i11k0 Sorghum methylation... 365 5e-099
gb|CW316863.1|CW316863 104_808_11473115_116_35851_040 Sorgh... 355 5e-096
gb|CW170789.1|CW170789 104_581_11155395_148_36518_010 Sorgh... 343 2e-092
gb|CD234373.1|CD234373 SS1_27_A10.b1_A012 Salt-stressed see... 244 1e-062
gb|CW069461.1|CW069461 104_319_10525911_1_30093 Sorghum met... 208 7e-052
gb|BI075046.1|BI075046 IP1_20_F08.g1_A002 Immature pannicle... 208 7e-052
gb|CW146289.1|CW146289 104_539_11138914_116_34991_045 Sorgh... 200 2e-049
gb|CW089874.1|CW089874 104_435_10948960_114_32612_056 Sorgh... 141 1e-031
gb|CW089875.1|CW089875 104_435_10948960_116_32613_056 Sorgh... 141 1e-031
gb|CW219321.1|CW219321 104_653_11196690_116_37140_073 Sorgh... 141 1e-031
gb|CW434509.1|CW434509 fsbb001f150d22f0 Sorghum methylation... 139 6e-031
gb|CW434670.1|CW434670 fsbb001f150h18f0 Sorghum methylation... 139 6e-031
gb|CW295698.1|CW295698 104_777_11461084_116_35623_014 Sorgh... 131 1e-028
gb|BZ338769.1|BZ338769 ia97g11.b1 WGS-SbicolorF (JM107 adap... 129 6e-028
gb|BG947711.1|BG947711 IP1_8_B08.g1_A002 Immature pannicle ... 113 3e-023
gb|CW050711.1|CW050711 104_290_10514813_114_30195 Sorghum m... 111 1e-022
gb|AW284745.1|AW284745 LG1_239_A01.g1_A002 Light Grown 1 (L... 105 8e-021
gb|BG411401.1|BG411401 EM1_57_G10.g1_A002 Embryo 1 (EM1) So... 105 8e-021
gb|CL155339.1|CL155339 104_341_10782058_114_31471_154 Sorgh... 74 3e-011
gb|CW481449.1|CW481449 fsbb001f241a16k0 Sorghum methylation... 56 7e-006
gb|BH246250.1|BH246250 pSB1859.2 S. bicolor BTx623 PstI-dig... 54 3e-005
gb|CW129885.1|CW129885 104_512_11114810_148_34775_013 Sorgh... 54 3e-005
gb|CW251891.1|CW251891 104_714_11224187_116_35066_036 Sorgh... 54 3e-005
gb|CW273637.1|CW273637 104_746_11404006_148_35367_091 Sorgh... 54 3e-005
gb|CW458366.1|CW458366 fsbb001f204j23f0 Sorghum methylation... 54 3e-005
gb|CW232627.1|CW232627 104_685_11212918_148_37363_089 Sorgh... 50 4e-004
gb|CW118768.1|CW118768 104_495_11108388_148_34631_042 Sorgh... 44 0.025
gb|CF770107.1|CF770107 DSBF1_5_F01.g1_A010 Drought-stressed... 42 0.10
gb|CW131812.1|CW131812 104_514_11115874_148_34791_033 Sorgh... 40 0.40
gb|CW212690.1|CW212690 104_644_11191155_148_37027_016 Sorgh... 40 0.40
gb|CW420709.1|CW420709 fsbb001f128c13f0 Sorghum methylation... 40 0.40
>gb|BI074601.1|BI074601 IP1_13_E09.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 541
Score = 741 bits (374), Expect = 0.0
Identities = 494/534 (92%)
Strand = Plus / Plus
Query: 89 gtttgcatcggcacgatctacctggacgtcggcaccaaatacacatccatcctggccagg 148
|||||||||||||| ||||||||||| || ||||| |||||||||||||||||||||||
Sbjct: 8 gtttgcatcggcacaatctacctggatgttggcactaaatacacatccatcctggccaga 67
Query: 149 gctgcctgctccgcgttcgtctttgggttcgttacgttcatgtccattggaggattccct 208
||| |||| || || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 gcttcctgttctgcattcgtctttgggttcgttacgttcatgtccattggaggattccct 127
Query: 209 tcgttcgttgaagaaatgaaggtcttccagcgggaacggctgaacgggcactacggtgtc 268
||||| ||||||||||||||||||||||| |||||||||||||| |||||||| ||||||
Sbjct: 128 tcgtttgttgaagaaatgaaggtcttccaacgggaacggctgaatgggcactatggtgtc 187
Query: 269 gcggcgtttgtcatcagcaacaccatctcagccacgccgttcctgattctgatatgcttc 328
||||| ||||||||||| |||||||||||||| ||||| ||||||||||| |||||||||
Sbjct: 188 gcggcatttgtcatcagtaacaccatctcagcaacgccattcctgattctaatatgcttc 247
Query: 329 ttgtcgggaaccatatgctacttcatggtgcgcctccatcctggcttcgagcactacatc 388
||||||||||| ||||||||||| ||||||||||| |||||||| ||||| ||||| |||
Sbjct: 248 ttgtcgggaactatatgctactttatggtgcgcctgcatcctggtttcgaacactatatc 307
Query: 389 ttcttcgtcttgaacctgtacgccagcgttacggtggtcgagagcttgatgatggcgatt 448
|||||||||||||||||||| |||||||| || |||||||| ||||| |||||||| |||
Sbjct: 308 ttcttcgtcttgaacctgtatgccagcgtcacagtggtcgaaagcttaatgatggcaatt 367
Query: 449 gccagtgtcattccaaatttcctcatgggtatcatcataggggccgggattcagggaata 508
|||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||
Sbjct: 368 gccagtgtcattcccaatttcctcatgggtatcatcataggggctggaattcagggaata 427
Query: 509 ttcatgctggtctctggctacttcagacttccatacgacatcccgaagcccttttggaga 568
|| |||||||| ||||||||||||||||||||||||||||| || ||||| |||||||||
Sbjct: 428 tttatgctggtgtctggctacttcagacttccatacgacattccaaagcctttttggaga 487
Query: 569 taccccatgcagtacatcagcttccactactgggcactgcagggccagtgccag 622
||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct: 488 taccccatgcagtacatcagctttcattactgggcactgcagggccagtgccag 541
>gb|CF428141.1|CF428141 PH1_13_H04.b1_A002 Phosphorous-deficient seedlings Sorghum bicolor
cDNA clone PH1_13_H04_A002 3', mRNA sequence
Length = 589
Score = 652 bits (329), Expect = 0.0
Identities = 439/476 (92%)
Strand = Plus / Plus
Query: 471 tcatgggtatcatcataggggccgggattcagggaatattcatgctggtctctggctact 530
|||||||||||||||||||||| || |||||||||||||| |||||||| ||||||||||
Sbjct: 1 tcatgggtatcatcataggggctggaattcagggaatatttatgctggtgtctggctact 60
Query: 531 tcagacttccatacgacatcccgaagcccttttggagataccccatgcagtacatcagct 590
||||||||||||||||||| || ||||| |||||||| ||||||||||||||||||||||
Sbjct: 61 tcagacttccatacgacattccaaagcctttttggaggtaccccatgcagtacatcagct 120
Query: 591 tccactactgggcactgcagggccagtgccagaacgacatgaagggcctcgcggtcgaca 650
|||| |||||||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct: 121 tccattactgggcactgcagggccagtgccagaacgacatgaaaggcctcgtattcgaca 180
Query: 651 accaggacccggaccaacccaagatccccggggacttcatcctcaagtacatcttccaga 710
||||| |||| || ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 181 accagtacccagatcaacccaagatccccggggacttcatcctgaagtacatcttccaga 240
Query: 711 tcaacgtggaccgttccaagtggatcgacctgtcggtcattttcagcatgatcttcatct 770
||||||||||||| ||||||||||||| |||| |||||||||||||||||||||||||
Sbjct: 241 tcaacgtggaccggaacaagtggatcgacttgtcagtcattttcagcatgatcttcatct 300
Query: 771 accgcatcctcttcttcctcatgatcaagatcaacgaggacgngctgccgtggatccgcg 830
|||||||| ||||||||||||||||||||||||||||||| | ||||||||||||||| |
Sbjct: 301 accgcatcttcttcttcctcatgatcaagatcaacgaggatgtgctgccgtggatccgtg 360
Query: 831 gccacatcgcgaggaagaggatgcagaagaagggccctacccccactatgggcaagacgc 890
||||||||||||||||||| ||||||||||| ||||||| |||| | | ||||||||||
Sbjct: 361 gccacatcgcgaggaagagaatgcagaagaaaggccctagtcccagtttcggcaagacgc 420
Query: 891 cttcgctgagaggctacgtcgtcgatccggagctcggttccaacgagggctagagg 946
|||||||||||||||| || || ||||| |||||||||||||||||||||||||||
Sbjct: 421 cttcgctgagaggctatgttgtggatccagagctcggttccaacgagggctagagg 476
Score = 56.0 bits (28), Expect = 7e-006
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 999 ggctcttggtgttatattgtatatttaagatc 1030
||||||||||| ||||||||||||||||||||
Sbjct: 529 ggctcttggtgctatattgtatatttaagatc 560
>gb|BM324567.1|BM324567 PIC1_32_H03.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 500
Score = 638 bits (322), Expect = 0.0
Identities = 435/473 (91%)
Strand = Plus / Plus
Query: 77 ctcctcgtcaccgtttgcatcggcacgatctacctggacgtcggcaccaaatacacatcc 136
|||||||| || |||||||||||||| ||||||||||| || ||||| ||||||||||||
Sbjct: 20 ctcctcgtgactgtttgcatcggcacaatctacctggatgttggcactaaatacacatcc 79
Query: 137 atcctggccagggctgcctgctccgcgttcgtctttgggttcgttacgttcatgtccatt 196
||||||||||| ||| |||| || || |||||||||||||||||||||||||||||||||
Sbjct: 80 atcctggccagagcttcctgttctgcattcgtctttgggttcgttacgttcatgtccatt 139
Query: 197 ggaggattcccttcgttcgttgaagaaatgaaggtcttccagcgggaacggctgaacggg 256
||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||
Sbjct: 140 ggaggattcccttcgtttgttgaagaaatgaaggtcttccaacgggaacggctgaatggg 199
Query: 257 cactacggtgtcgcggcgtttgtcatcagcaacaccatctcagccacgccgttcctgatt 316
||||| ||||||||||| ||||||||||| |||||||||||||| ||||| |||||||||
Sbjct: 200 cactatggtgtcgcggcatttgtcatcagtaacaccatctcagcaacgccattcctgatt 259
Query: 317 ctgatatgcttcttgtcgggaaccatatgctacttcatggtgcgcctccatcctggcttc 376
|| |||||||||||||||||||| ||||||||||| ||||||||||| |||||||| |||
Sbjct: 260 ctaatatgcttcttgtcgggaactatatgctactttatggtgcgcctgcatcctggtttc 319
Query: 377 gagcactacatcttcttcgtcttgaacctgtacgccagcgttacggtggtcgagagcttg 436
|| ||||| ||||||||||||||||||||||| |||||||| || |||||||| |||||
Sbjct: 320 gaacactatatcttcttcgtcttgaacctgtatgccagcgtcacagtggtcgaaagctta 379
Query: 437 atgatggcgattgccagtgtcattccaaatttcctcatgggtatcatcataggggccggg 496
|||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct: 380 atgatggcaattgccagtgtcattcccaatttcctcatgggtatcatcataggggctgga 439
Query: 497 attcagggaatattcatgctggtctctggctacttcagacttccatacgacat 549
||||| |||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct: 440 attcanggaatatttatgctggtgtctggctacttcagacttccatacgacat 492
>gb|CD461475.1|CD461475 SA1_32_F07.b1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_32_F07_A002 3', mRNA sequence
Length = 659
Score = 609 bits (307), Expect = e-172
Identities = 412/446 (92%), Gaps = 1/446 (0%)
Strand = Plus / Plus
Query: 502 gggaatattcatgctggtctctggctacttcagacttccatacgacatcccgaagccctt 561
||||||||| |||||||| ||||||||||||||||||||||||||||| || ||||| ||
Sbjct: 1 gggaatatttatgctggtgtctggctacttcagacttccatacgacattccaaagccttt 60
Query: 562 ttggagataccccatgcagtacatcagcttccactactgggcactgcagggccagtgcca 621
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 61 ttggagataccccatgcagtacatcagcttccattactgggcactgcagggccagtgcca 120
Query: 622 gaacgacatgaagggcctcgcggtcgacaaccaggacccggaccaacccaagatccccgg 681
|||||||||||| ||||||| ||||||||||| |||| || |||||||||||||||||
Sbjct: 121 gaacgacatgaaaggcctcgtattcgacaaccagtacccagatcaacccaagatccccgg 180
Query: 682 ggacttcatcctcaagtacatcttccagatcaacgtggaccgttccaagtggatcgacct 741
|||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct: 181 ggacttcatcctgaagtacatcttccagatcaacgtggaccggaacaagtggatcgactt 240
Query: 742 gtcggtcattttcagcatgatcttcatctaccgcatcctcttcttcctcatgatcaaga- 800
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gtcagtcattttcagcatgatcttcatctaccgcatcctcttcttcctcatgatcaagat 300
Query: 801 tcaacgaggacgngctgccgtggatccgcggccacatcgcgaggaagaggatgcagaaga 860
|||||||||| | ||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct: 301 tcaacgaggatgtgctgccgtggatccgtggccacatcgcgaggaagagaatgcagaaga 360
Query: 861 agggccctacccccactatgggcaagacgccttcgctgagaggctacgtcgtcgatccgg 920
| ||||||| |||| | | |||||||||||||||||||||||||| || || ||||| |
Sbjct: 361 aaggccctagtcccagtttcggcaagacgccttcgctgagaggctatgttgtggatccag 420
Query: 921 agctcggttccaacgagggctagagg 946
||||||||||||||||||||||||||
Sbjct: 421 agctcggttccaacgagggctagagg 446
Score = 56.0 bits (28), Expect = 7e-006
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 999 ggctcttggtgttatattgtatatttaagatc 1030
||||||||||| ||||||||||||||||||||
Sbjct: 499 ggctcttggtgctatattgtatatttaagatc 530
>gb|CD427423.1|CD427423 SA1_30_A11.g1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_30_A11_A002 5', mRNA sequence
Length = 663
Score = 535 bits (270), Expect = e-150
Identities = 353/381 (92%)
Strand = Plus / Minus
Query: 566 agataccccatgcagtacatcagcttccactactgggcactgcagggccagtgccagaac 625
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 663 agataccccatgcagtacatcagcttccattactgggcactgcagggccagtgccagaac 604
Query: 626 gacatgaagggcctcgcggtcgacaaccaggacccggaccaacccaagatccccggggac 685
|||||||| ||||||| ||||||||||| |||| || |||||||||||||||||||||
Sbjct: 603 gacatgaaaggcctcgtattcgacaaccagtacccagatcaacccaagatccccggggac 544
Query: 686 ttcatcctcaagtacatcttccagatcaacgtggaccgttccaagtggatcgacctgtcg 745
|||||||| ||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct: 543 ttcatcctgaagtacatcttccagatcaacgtggaccggaacaagtggatcgacttgtca 484
Query: 746 gtcattttcagcatgatcttcatctaccgcatcctcttcttcctcatgatcaagatcaac 805
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 gtcattttcagcatgatcttcatctaccgcatcctcttcttcctcatgatcaagatcaac 424
Query: 806 gaggacgngctgccgtggatccgcggccacatcgcgaggaagaggatgcagaagaagggc 865
||||| | ||||||||||||||| |||||||||||||||||||| ||||||||||| |||
Sbjct: 423 gaggatgtgctgccgtggatccgtggccacatcgcgaggaagagaatgcagaagaaaggc 364
Query: 866 cctacccccactatgggcaagacgccttcgctgagaggctacgtcgtcgatccggagctc 925
|||| |||| | | |||||||||||||||||||||||||| || || ||||| ||||||
Sbjct: 363 cctagtcccagtttcggcaagacgccttcgctgagaggctatgttgtggatccagagctc 304
Query: 926 ggttccaacgagggctagagg 946
|||||||||||||||||||||
Sbjct: 303 ggttccaacgagggctagagg 283
Score = 56.0 bits (28), Expect = 7e-006
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 999 ggctcttggtgttatattgtatatttaagatc 1030
||||||||||| ||||||||||||||||||||
Sbjct: 230 ggctcttggtgctatattgtatatttaagatc 199
>gb|BM329056.1|BM329056 PIC1_32_H03.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 520
Score = 531 bits (268), Expect = e-149
Identities = 351/379 (92%)
Strand = Plus / Plus
Query: 568 ataccccatgcagtacatcagcttccactactgggcactgcagggccagtgccagaacga 627
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 1 ataccccatgcagtacatcagcttccattactgggcactgcagggccagtgccagaacga 60
Query: 628 catgaagggcctcgcggtcgacaaccaggacccggaccaacccaagatccccggggactt 687
|||||| ||||||| ||||||||||| |||| || |||||||||||||||||||||||
Sbjct: 61 catgaaaggcctcgtattcgacaaccagtacccagatcaacccaagatccccggggactt 120
Query: 688 catcctcaagtacatcttccagatcaacgtggaccgttccaagtggatcgacctgtcggt 747
|||||| ||||||||||||||||||||||||||||| ||||||||||||| |||| ||
Sbjct: 121 catcctgaagtacatcttccagatcaacgtggaccggaacaagtggatcgacttgtcagt 180
Query: 748 cattttcagcatgatcttcatctaccgcatcctcttcttcctcatgatcaagatcaacga 807
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 cattttcagcatgatcttcatctaccgcatcctcttcttcctcatgatcaagatcaacga 240
Query: 808 ggacgngctgccgtggatccgcggccacatcgcgaggaagaggatgcagaagaagggccc 867
||| | ||||||||||||||| |||||||||||||||||||| ||||||||||| |||||
Sbjct: 241 ggatgtgctgccgtggatccgtggccacatcgcgaggaagagaatgcagaagaaaggccc 300
Query: 868 tacccccactatgggcaagacgccttcgctgagaggctacgtcgtcgatccggagctcgg 927
|| |||| | | |||||||||||||||||||||||||| || || ||||| ||||||||
Sbjct: 301 tagtcccagtttcggcaagacgccttcgctgagaggctatgttgtggatccagagctcgg 360
Query: 928 ttccaacgagggctagagg 946
|||||||||||||||||||
Sbjct: 361 ttccaacgagggctagagg 379
Score = 56.0 bits (28), Expect = 7e-006
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 999 ggctcttggtgttatattgtatatttaagatc 1030
||||||||||| ||||||||||||||||||||
Sbjct: 432 ggctcttggtgctatattgtatatttaagatc 463
>gb|BZ338770.1|BZ338770 ia97g11.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone ia97g11 5', DNA sequence
Length = 541
Score = 460 bits (232), Expect = e-127
Identities = 312/339 (92%)
Strand = Plus / Minus
Query: 608 cagggccagtgccagaacgacatgaagggcctcgcggtcgacaaccaggacccggaccaa 667
|||||||||||||||||||||||||| ||||||| ||||||||||| |||| || |||
Sbjct: 508 cagggccagtgccagaacgacatgaaaggcctcgtattcgacaaccagtacccagatcaa 449
Query: 668 cccaagatccccggggacttcatcctcaagtacatcttccagatcaacgtggaccgttcc 727
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct: 448 cccaagatccccggggacttcatcctgaagtacatcttccagatcaacgtggaccggaac 389
Query: 728 aagtggatcgacctgtcggtcattttcagcatgatcttcatctaccgcatcctcttcttc 787
|||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 aagtggatcgacttgtcagtcattttcagcatgatcttcatctaccgcatcctcttcttc 329
Query: 788 ctcatgatcaagatcaacgaggacgngctgccgtggatccgcggccacatcgcgaggaag 847
||||||||||||||||||||||| | ||||||||||||||| ||||||||||||||||||
Sbjct: 328 ctcatgatcaagatcaacgaggatgtgctgccgtggatccgtggccacatcgcgaggaag 269
Query: 848 aggatgcagaagaagggccctacccccactatgggcaagacgccttcgctgagaggctac 907
|| ||||||||||| ||||||| |||| | | ||||||||||||||||||||||||||
Sbjct: 268 agaatgcagaagaaaggccctagtcccagtttcggcaagacgccttcgctgagaggctat 209
Query: 908 gtcgtcgatccggagctcggttccaacgagggctagagg 946
|| || ||||| |||||||||||||||||||||||||||
Sbjct: 208 gttgtggatccagagctcggttccaacgagggctagagg 170
Score = 56.0 bits (28), Expect = 7e-006
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 999 ggctcttggtgttatattgtatatttaagatc 1030
||||||||||| ||||||||||||||||||||
Sbjct: 117 ggctcttggtgctatattgtatatttaagatc 86
>gb|CW146290.1|CW146290 104_539_11138914_148_34987_045 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11138914, DNA
sequence
Length = 701
Score = 460 bits (232), Expect = e-127
Identities = 312/339 (92%)
Strand = Plus / Minus
Query: 608 cagggccagtgccagaacgacatgaagggcctcgcggtcgacaaccaggacccggaccaa 667
|||||||||||||||||||||||||| ||||||| ||||||||||| |||| || |||
Sbjct: 353 cagggccagtgccagaacgacatgaaaggcctcgtattcgacaaccagtacccagatcaa 294
Query: 668 cccaagatccccggggacttcatcctcaagtacatcttccagatcaacgtggaccgttcc 727
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct: 293 cccaagatccccggggacttcatcctgaagtacatcttccagatcaacgtggaccggaac 234
Query: 728 aagtggatcgacctgtcggtcattttcagcatgatcttcatctaccgcatcctcttcttc 787
|||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 233 aagtggatcgacttgtcagtcattttcagcatgatcttcatctaccgcatcctcttcttc 174
Query: 788 ctcatgatcaagatcaacgaggacgngctgccgtggatccgcggccacatcgcgaggaag 847
||||||||||||||||||||||| | ||||||||||||||| ||||||||||||||||||
Sbjct: 173 ctcatgatcaagatcaacgaggatgtgctgccgtggatccgtggccacatcgcgaggaag 114
Query: 848 aggatgcagaagaagggccctacccccactatgggcaagacgccttcgctgagaggctac 907
|| ||||||||||| ||||||| |||| | | ||||||||||||||||||||||||||
Sbjct: 113 agaatgcagaagaaaggccctagtcccagtttcggcaagacgccttcgctgagaggctat 54
Query: 908 gtcgtcgatccggagctcggttccaacgagggctagagg 946
|| || ||||| |||||||||||||||||||||||||||
Sbjct: 53 gttgtggatccagagctcggttccaacgagggctagagg 15
Score = 174 bits (88), Expect = 1e-041
Identities = 106/112 (94%)
Strand = Plus / Minus
Query: 500 cagggaatattcatgctggtctctggctacttcagacttccatacgacatcccgaagccc 559
||||||||||| |||||||| ||||||||||||||||||||||||||||| || |||||
Sbjct: 556 cagggaatatttatgctggtgtctggctacttcagacttccatacgacattccaaagcct 497
Query: 560 ttttggagataccccatgcagtacatcagcttccactactgggcactgcagg 611
||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 496 ttttggagataccccatgcagtacatcagcttccattactgggcactgcagg 445
>gb|CW381902.1|CW381902 fsbb001f063i11f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f063i11, DNA
sequence
Length = 764
Score = 460 bits (232), Expect = e-127
Identities = 312/339 (92%)
Strand = Plus / Minus
Query: 608 cagggccagtgccagaacgacatgaagggcctcgcggtcgacaaccaggacccggaccaa 667
|||||||||||||||||||||||||| ||||||| ||||||||||| |||| || |||
Sbjct: 374 cagggccagtgccagaacgacatgaaaggcctcgtattcgacaaccagtacccagatcaa 315
Query: 668 cccaagatccccggggacttcatcctcaagtacatcttccagatcaacgtggaccgttcc 727
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct: 314 cccaagatccccggggacttcatcctgaagtacatcttccagatcaacgtggaccggaac 255
Query: 728 aagtggatcgacctgtcggtcattttcagcatgatcttcatctaccgcatcctcttcttc 787
|||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 aagtggatcgacttgtcagtcattttcagcatgatcttcatctaccgcatcctcttcttc 195
Query: 788 ctcatgatcaagatcaacgaggacgngctgccgtggatccgcggccacatcgcgaggaag 847
||||||||||||||||||||||| | ||||||||||||||| ||||||||||||||||||
Sbjct: 194 ctcatgatcaagatcaacgaggatgtgctgccgtggatccgtggccacatcgcgaggaag 135
Query: 848 aggatgcagaagaagggccctacccccactatgggcaagacgccttcgctgagaggctac 907
|| ||||||||||| ||||||| |||| | | ||||||||||||||||||||||||||
Sbjct: 134 agaatgcagaagaaaggccctagtcccagtttcggcaagacgccttcgctgagaggctat 75
Query: 908 gtcgtcgatccggagctcggttccaacgagggctagagg 946
|| || ||||| |||||||||||||||||||||||||||
Sbjct: 74 gttgtggatccagagctcggttccaacgagggctagagg 36
Score = 174 bits (88), Expect = 1e-041
Identities = 106/112 (94%)
Strand = Plus / Minus
Query: 500 cagggaatattcatgctggtctctggctacttcagacttccatacgacatcccgaagccc 559
||||||||||| |||||||| ||||||||||||||||||||||||||||| || |||||
Sbjct: 577 cagggaatatttatgctggtgtctggctacttcagacttccatacgacattccaaagcct 518
Query: 560 ttttggagataccccatgcagtacatcagcttccactactgggcactgcagg 611
||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 517 ttttggagataccccatgcagtacatcagcttccattactgggcactgcagg 466
>gb|CD214110.1|CD214110 HS1_70_B04.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_70_B04_A012 3', mRNA sequence
Length = 623
Score = 418 bits (211), Expect = e-115
Identities = 279/302 (92%)
Strand = Plus / Plus
Query: 645 tcgacaaccaggacccggaccaacccaagatccccggggacttcatcctcaagtacatct 704
||||||||||| |||| || ||||||||||||||||||||||||||||| ||||||||||
Sbjct: 1 tcgacaaccagtacccagatcaacccaagatccccggggacttcatcctgaagtacatct 60
Query: 705 tccagatcaacgtggaccgttccaagtggatcgacctgtcggtcattttcagcatgatct 764
||||||||||||||||||| ||||||||||||| |||| |||||||||||||||||||
Sbjct: 61 tccagatcaacgtggaccggaacaagtggatcgacttgtcagtcattttcagcatgatct 120
Query: 765 tcatctaccgcatcctcttcttcctcatgatcaagatcaacgaggacgngctgccgtgga 824
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 121 tcatctaccgcatcctcttcttcctcatgatcaagatcaacgaggatgtgctgccgtgga 180
Query: 825 tccgcggccacatcgcgaggaagaggatgcagaagaagggccctacccccactatgggca 884
|||| |||||||||||||||||||| ||||||||||| ||||||| |||| | | ||||
Sbjct: 181 tccgtggccacatcgcgaggaagagaatgcagaagaaaggccctagtcccagtttcggca 240
Query: 885 agacgccttcgctgagaggctacgtcgtcgatccggagctcggttccaacgagggctaga 944
|||||||||||||||||||||| || || ||||| |||||||||||||||||||||||||
Sbjct: 241 agacgccttcgctgagaggctatgttgtggatccagagctcggttccaacgagggctaga 300
Query: 945 gg 946
||
Sbjct: 301 gg 302
Score = 56.0 bits (28), Expect = 7e-006
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 999 ggctcttggtgttatattgtatatttaagatc 1030
||||||||||| ||||||||||||||||||||
Sbjct: 355 ggctcttggtgctatattgtatatttaagatc 386
>gb|BI074285.1|BI074285 IP1_13_E09.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 551
Score = 410 bits (207), Expect = e-112
Identities = 275/298 (92%)
Strand = Plus / Plus
Query: 649 caaccaggacccggaccaacccaagatccccggggacttcatcctcaagtacatcttcca 708
||||||| |||| || ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 1 caaccagtacccagatcaacccaagatccccggggacttcatcctgaagtacatcttcca 60
Query: 709 gatcaacgtggaccgttccaagtggatcgacctgtcggtcattttcagcatgatcttcat 768
||||||||||||||| ||||||||||||| |||| |||||||||||||||||||||||
Sbjct: 61 gatcaacgtggaccggaacaagtggatcgacttgtcagtcattttcagcatgatcttcat 120
Query: 769 ctaccgcatcctcttcttcctcatgatcaagatcaacgaggacgngctgccgtggatccg 828
|||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 121 ctaccgcatcctcttcttcctcatgatcaagatcaacgaggatgtgctgccgtggatccg 180
Query: 829 cggccacatcgcgaggaagaggatgcagaagaagggccctacccccactatgggcaagac 888
|||||||||||||||||||| ||||||||||| ||||||| |||| | | ||||||||
Sbjct: 181 tggccacatcgcgaggaagagaatgcagaagaaaggccctagtcccagtttcggcaagac 240
Query: 889 gccttcgctgagaggctacgtcgtcgatccggagctcggttccaacgagggctagagg 946
|||||||||||||||||| || || ||||| |||||||||||||||||||||||||||
Sbjct: 241 gccttcgctgagaggctatgttgtggatccagagctcggttccaacgagggctagagg 298
Score = 48.1 bits (24), Expect = 0.002
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 999 ggctcttggtgttatattgtatatttaagatc 1030
|||||||||| ||||||||||||||||||||
Sbjct: 351 ggctcttggtactatattgtatatttaagatc 382
>gb|BI075448.1|BI075448 IP1_20_F08.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 525
Score = 410 bits (207), Expect = e-112
Identities = 319/355 (89%), Gaps = 2/355 (0%)
Strand = Plus / Plus
Query: 4 tgcaccctgaccaancgctccttcatcaacatgtcgcgggactttgg-tactactggctn 62
|||||||||||||| ||||| |||||||||||||| ||||||||||| || ||||||||
Sbjct: 171 tgcaccctgaccaagcgctcgttcatcaacatgtcacgggactttgggtattactggctc 230
Query: 63 ag-ctcntnatttacctcctcgtcaccgtttgcatcggcacgatctacctggacgtcggc 121
|| ||| | || || |||||||| || |||||||||||||| ||||||||||| || |||
Sbjct: 231 aggctcctgatctatctcctcgtgactgtttgcatcggcacaatctacctggatgttggc 290
Query: 122 accaaatacacatccatcctggccagggctgcctgctccgcgttcgtctttgggttcgtt 181
|| ||||||||||||||||||||||| ||| |||| || || ||||||||||||||||||
Sbjct: 291 actaaatacacatccatcctggccagagcttcctgttctgcattcgtctttgggttcgtt 350
Query: 182 acgttcatgtccattggaggattcccttcgttcgttgaagaaatgaaggtcttccagcgg 241
|||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||
Sbjct: 351 acgttcatgtccattggaggattcccttcgtttgttgaagagatgaaggtcttccaacgg 410
Query: 242 gaacggctgaacgggcactacggtgtcgcggcgtttgtcatcagcaacaccatctcagcc 301
||||||||||| |||||||| ||||||||||| ||||||||||| ||||||||||||||
Sbjct: 411 gaacggctgaatgggcactatggtgtcgcggcatttgtcatcagtaacaccatctcagca 470
Query: 302 acgccgttcctgattctgatatgcttcttgtcgggaaccatatgctacttcatgg 356
||||| ||||||||||| |||||||||||||||| || ||||||||||| ||||
Sbjct: 471 acgccattcctgattctaatatgcttcttgtcggagactatatgctactttatgg 525
>gb|CN150318.1|CN150318 WOUND1_68_H05.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_68_H05_A002 3', mRNA sequence
Length = 499
Score = 402 bits (203), Expect = e-110
Identities = 262/282 (92%)
Strand = Plus / Plus
Query: 665 caacccaagatccccggggacttcatcctcaagtacatcttccagatcaacgtggaccgt 724
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 1 caacccaagatccccggggacttcatcctgaagtacatcttccagatcaacgtggaccgg 60
Query: 725 tccaagtggatcgacctgtcggtcattttcagcatgatcttcatctaccgcatcctcttc 784
||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aacaagtggatcgacttgtcagtcattttcagcatgatcttcatctaccgcatcctcttc 120
Query: 785 ttcctcatgatcaagatcaacgaggacgngctgccgtggatccgcggccacatcgcgagg 844
|||||||||||||||||||||||||| | ||||||||||||||| |||||||||||||||
Sbjct: 121 ttcctcatgatcaagatcaacgaggatgtgctgccgtggatccgtggccacatcgcgagg 180
Query: 845 aagaggatgcagaagaagggccctacccccactatgggcaagacgccttcgctgagaggc 904
||||| ||||||||||| ||||||| |||| | | ||||||||||||||||||||||||
Sbjct: 181 aagagaatgcagaagaaaggccctagtcccagtttcggcaagacgccttcgctgagaggc 240
Query: 905 tacgtcgtcgatccggagctcggttccaacgagggctagagg 946
|| || || ||||| |||||||||||||||||||||||||||
Sbjct: 241 tatgttgtggatccagagctcggttccaacgagggctagagg 282
Score = 56.0 bits (28), Expect = 7e-006
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 999 ggctcttggtgttatattgtatatttaagatc 1030
||||||||||| ||||||||||||||||||||
Sbjct: 335 ggctcttggtgctatattgtatatttaagatc 366
>gb|CW316864.1|CW316864 104_808_11473115_148_35855_040 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11473115, DNA
sequence
Length = 721
Score = 371 bits (187), Expect = e-101
Identities = 237/254 (93%)
Strand = Plus / Minus
Query: 608 cagggccagtgccagaacgacatgaagggcctcgcggtcgacaaccaggacccggaccaa 667
|||||||||||||||||||||||||| ||||||| ||||||||||| |||| || |||
Sbjct: 255 cagggccagtgccagaacgacatgaaaggcctcgtattcgacaaccagtacccagatcaa 196
Query: 668 cccaagatccccggggacttcatcctcaagtacatcttccagatcaacgtggaccgttcc 727
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct: 195 cccaagatccccggggacttcatcctgaagtacatcttccagatcaacgtggaccggaac 136
Query: 728 aagtggatcgacctgtcggtcattttcagcatgatcttcatctaccgcatcctcttcttc 787
|||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 aagtggatcgacttgtcagtcattttcagcatgatcttcatctaccgcatcctcttcttc 76
Query: 788 ctcatgatcaagatcaacgaggacgngctgccgtggatccgcggccacatcgcgaggaag 847
||||||||||||||||||||||| | ||||||||||||||| ||||||||||||||||||
Sbjct: 75 ctcatgatcaagatcaacgaggatgtgctgccgtggatccgtggccacatcgcgaggaag 16
Query: 848 aggatgcagaagaa 861
|| |||||||||||
Sbjct: 15 agaatgcagaagaa 2
Score = 174 bits (88), Expect = 1e-041
Identities = 106/112 (94%)
Strand = Plus / Minus
Query: 500 cagggaatattcatgctggtctctggctacttcagacttccatacgacatcccgaagccc 559
||||||||||| |||||||| ||||||||||||||||||||||||||||| || |||||
Sbjct: 458 cagggaatatttatgctggtgtctggctacttcagacttccatacgacattccaaagcct 399
Query: 560 ttttggagataccccatgcagtacatcagcttccactactgggcactgcagg 611
||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 398 ttttggagataccccatgcagtacatcagcttccattactgggcactgcagg 347
>gb|CW170788.1|CW170788 104_581_11155395_116_36517_010 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11155395, DNA
sequence
Length = 708
Score = 365 bits (184), Expect = 5e-099
Identities = 253/276 (91%)
Strand = Plus / Plus
Query: 228 aggtcttccagcgggaacggctgaacgggcactacggtgtcgcggcgtttgtcatcagca 287
|||||||||| |||||||||||||| |||||||| ||||||||||| ||||||||||| |
Sbjct: 222 aggtcttccaacgggaacggctgaatgggcactatggtgtcgcggcatttgtcatcagta 281
Query: 288 acaccatctcagccacgccgttcctgattctgatatgcttcttgtcgggaaccatatgct 347
||||||||||||| ||||| ||||||||||| |||||||||||||||||||| |||||||
Sbjct: 282 acaccatctcagcaacgccattcctgattctaatatgcttcttgtcgggaactatatgct 341
Query: 348 acttcatggtgcgcctccatcctggcttcgagcactacatcttcttcgtcttgaacctgt 407
|||| ||||||||||| |||||||| ||||| ||||| ||||||||||||||||||||||
Sbjct: 342 actttatggtgcgcctgcatcctggtttcgaacactatatcttcttcgtcttgaacctgt 401
Query: 408 acgccagcgttacggtggtcgagagcttgatgatggcgattgccagtgtcattccaaatt 467
| |||||||| || |||||||| ||||| |||||||| ||||||||||||||||| ||||
Sbjct: 402 atgccagcgtcacagtggtcgaaagcttaatgatggcaattgccagtgtcattcccaatt 461
Query: 468 tcctcatgggtatcatcataggggccgggattcagg 503
||||||||||||||||||||||||| || |||||||
Sbjct: 462 tcctcatgggtatcatcataggggctggaattcagg 497
Score = 131 bits (66), Expect = 1e-028
Identities = 84/90 (93%)
Strand = Plus / Plus
Query: 142 ggccagggctgcctgctccgcgttcgtctttgggttcgttacgttcatgtccattggagg 201
|||||| ||| |||| || || ||||||||||||||||||||||||||||||||||||||
Sbjct: 53 ggccagagcttcctgttctgcattcgtctttgggttcgttacgttcatgtccattggagg 112
Query: 202 attcccttcgttcgttgaagaaatgaaggt 231
|||||||||||| |||||||||||||||||
Sbjct: 113 attcccttcgtttgttgaagaaatgaaggt 142
>gb|CW381903.1|CW381903 fsbb001f063i11k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f063i11, DNA
sequence
Length = 763
Score = 365 bits (184), Expect = 5e-099
Identities = 253/276 (91%)
Strand = Plus / Plus
Query: 228 aggtcttccagcgggaacggctgaacgggcactacggtgtcgcggcgtttgtcatcagca 287
|||||||||| |||||||||||||| |||||||| ||||||||||| ||||||||||| |
Sbjct: 256 aggtcttccaacgggaacggctgaatgggcactatggtgtcgcggcatttgtcatcagta 315
Query: 288 acaccatctcagccacgccgttcctgattctgatatgcttcttgtcgggaaccatatgct 347
||||||||||||| ||||| ||||||||||| |||||||||||||||||||| |||||||
Sbjct: 316 acaccatctcagcaacgccattcctgattctaatatgcttcttgtcgggaactatatgct 375
Query: 348 acttcatggtgcgcctccatcctggcttcgagcactacatcttcttcgtcttgaacctgt 407
|||| ||||||||||| |||||||| ||||| ||||| ||||||||||||||||||||||
Sbjct: 376 actttatggtgcgcctgcatcctggtttcgaacactatatcttcttcgtcttgaacctgt 435
Query: 408 acgccagcgttacggtggtcgagagcttgatgatggcgattgccagtgtcattccaaatt 467
| |||||||| || |||||||| ||||| |||||||| ||||||||||||||||| ||||
Sbjct: 436 atgccagcgtcacagtggtcgaaagcttaatgatggcaattgccagtgtcattcccaatt 495
Query: 468 tcctcatgggtatcatcataggggccgggattcagg 503
||||||||||||||||||||||||| || |||||||
Sbjct: 496 tcctcatgggtatcatcataggggctggaattcagg 531
Score = 131 bits (66), Expect = 1e-028
Identities = 84/90 (93%)
Strand = Plus / Plus
Query: 142 ggccagggctgcctgctccgcgttcgtctttgggttcgttacgttcatgtccattggagg 201
|||||| ||| |||| || || ||||||||||||||||||||||||||||||||||||||
Sbjct: 87 ggccagagcttcctgttctgcattcgtctttgggttcgttacgttcatgtccattggagg 146
Query: 202 attcccttcgttcgttgaagaaatgaaggt 231
|||||||||||| |||||||||||||||||
Sbjct: 147 attcccttcgtttgttgaagaaatgaaggt 176
>gb|CW316863.1|CW316863 104_808_11473115_116_35851_040 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11473115, DNA
sequence
Length = 681
Score = 355 bits (179), Expect = 5e-096
Identities = 248/271 (91%)
Strand = Plus / Plus
Query: 233 ttccagcgggaacggctgaacgggcactacggtgtcgcggcgtttgtcatcagcaacacc 292
||||| |||||||||||||| |||||||| ||||||||||| ||||||||||| ||||||
Sbjct: 1 ttccaacgggaacggctgaatgggcactatggtgtcgcggcatttgtcatcagtaacacc 60
Query: 293 atctcagccacgccgttcctgattctgatatgcttcttgtcgggaaccatatgctacttc 352
|||||||| ||||| ||||||||||| |||||||||||||||||||| |||||||||||
Sbjct: 61 atctcagcaacgccattcctgattctaatatgcttcttgtcgggaactatatgctacttt 120
Query: 353 atggtgcgcctccatcctggcttcgagcactacatcttcttcgtcttgaacctgtacgcc 412
||||||||||| |||||||| ||||| ||||| ||||||||||||||||||||||| |||
Sbjct: 121 atggtgcgcctgcatcctggtttcgaacactatatcttcttcgtcttgaacctgtatgcc 180
Query: 413 agcgttacggtggtcgagagcttgatgatggcgattgccagtgtcattccaaatttcctc 472
||||| || |||||||| ||||| |||||||| ||||||||||||||||| |||||||||
Sbjct: 181 agcgtcacagtggtcgaaagcttaatgatggcaattgccagtgtcattcccaatttcctc 240
Query: 473 atgggtatcatcataggggccgggattcagg 503
|||||||||||||||||||| || |||||||
Sbjct: 241 atgggtatcatcataggggctggaattcagg 271
>gb|CW170789.1|CW170789 104_581_11155395_148_36518_010 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11155395, DNA
sequence
Length = 740
Score = 343 bits (173), Expect = 2e-092
Identities = 226/244 (92%)
Strand = Plus / Minus
Query: 608 cagggccagtgccagaacgacatgaagggcctcgcggtcgacaaccaggacccggaccaa 667
|||||||||||||||||||||||||| ||||||| ||||||||||| |||| || |||
Sbjct: 253 cagggccagtgccagaacgacatgaaaggcctcgtattcgacaaccagtacccagatcaa 194
Query: 668 cccaagatccccggggacttcatcctcaagtacatcttccagatcaacgtggaccgttcc 727
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct: 193 cccaagatccccggggacttcatcctgaagtacatcttccagatcaacgtggaccggaac 134
Query: 728 aagtggatcgacctgtcggtcattttcagcatgatcttcatctaccgcatcctcttcttc 787
|||||||||||| |||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 aagtggatcgacttgtcagacattttcagcatgatcttcatctaccgcatcctcttcttc 74
Query: 788 ctcatgatcaagatcaacgaggacgngctgccgtggatccgcggccacatcgcgaggaag 847
||||||||||||||||||||||| | ||||| ||||||||| ||||||||||||||||||
Sbjct: 73 ctcatgatcaagatcaacgaggatgtgctgcagtggatccgtggccacatcgcgaggaag 14
Query: 848 agga 851
||||
Sbjct: 13 agga 10
Score = 127 bits (64), Expect = 2e-027
Identities = 100/112 (89%)
Strand = Plus / Minus
Query: 500 cagggaatattcatgctggtctctggctacttcagacttccatacgacatcccgaagccc 559
||||||||||| |||||||| ||||||||||||||||||||||||||||| || ||||
Sbjct: 456 cagggaatatttatgctggtgtctggctacttcagacttccatacgacattccagagcct 397
Query: 560 ttttggagataccccatgcagtacatcagcttccactactgggcactgcagg 611
| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 396 taaaaaagataccccatgcagtacatcagcttccattactgggcactgcagg 345
>gb|CD234373.1|CD234373 SS1_27_A10.b1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_27_A10_A012 3', mRNA sequence
Length = 640
Score = 244 bits (123), Expect = 1e-062
Identities = 270/319 (84%)
Strand = Plus / Plus
Query: 494 gggattcagggaatattcatgctggtctctggctacttcagacttccatacgacatcccg 553
||||||||||| |||||||||||||| || || |||||||||||||| | ||||||||
Sbjct: 9 gggattcaggggatattcatgctggtgtcaggttacttcagacttccgcatgacatccca 68
Query: 554 aagcccttttggagataccccatgcagtacatcagcttccactactgggcactgcagggc 613
|||||||| ||||| ||||||||| ||| |||||||||||||||||||| ||||||||
Sbjct: 69 aagcccttctggaggtaccccatgtcctacgtcagcttccactactgggcattgcagggc 128
Query: 614 cagtgccagaacgacatgaagggcctcgcggtcgacaaccaggacccggaccaacccaag 673
|||| |||||||||| |||||||||| | |||||||||||||| || | ||||||
Sbjct: 129 cagtaccagaacgacctgaagggcctgctgttcgacaaccaggacgacgagctgcccaag 188
Query: 674 atccccggggacttcatcctcaagtacatcttccagatcaacgtggaccgttccaagtgg 733
||||||||||| |||||||| || || | ||||||||| ||||| |||| |||||||||
Sbjct: 189 atccccggggagttcatcctggagaacgtgttccagatcgacgtgaaccggtccaagtgg 248
Query: 734 atcgacctgtcggtcattttcagcatgatcttcatctaccgcatcctcttcttcctcatg 793
| |||||| | || | |||||||||||| ||||||||||| | ||||||||| | |||
Sbjct: 249 ctggacctggccgtgctgttcagcatgatcgtcatctaccgcctgctcttcttcgtgatg 308
Query: 794 atcaagatcaacgaggacg 812
|||||||||| ||||||||
Sbjct: 309 atcaagatcagcgaggacg 327
>gb|CW069461.1|CW069461 104_319_10525911_1_30093 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10525911, DNA
sequence
Length = 643
Score = 208 bits (105), Expect = 7e-052
Identities = 144/157 (91%)
Strand = Plus / Minus
Query: 228 aggtcttccagcgggaacggctgaacgggcactacggtgtcgcggcgtttgtcatcagca 287
|||||||||| |||||||||||||| |||||||| ||||||||||| ||||||||||| |
Sbjct: 158 aggtcttccaacgggaacggctgaatgggcactatggtgtcgcggcatttgtcatcagta 99
Query: 288 acaccatctcagccacgccgttcctgattctgatatgcttcttgtcgggaaccatatgct 347
||||||||||||| ||||| ||||||||||| |||||||||||||||||||| |||||||
Sbjct: 98 acaccatctcagcaacgccattcctgattctaatatgcttcttgtcgggaactatatgct 39
Query: 348 acttcatggtgcgcctccatcctggcttcgagcacta 384
|||| ||||||||||| |||||||| ||||| |||||
Sbjct: 38 actttatggtgcgcctgcatcctggtttcgaacacta 2
Score = 139 bits (70), Expect = 6e-031
Identities = 125/142 (88%), Gaps = 2/142 (1%)
Strand = Plus / Minus
Query: 4 tgcaccctgaccaancgctccttcatcaacatgtcgcgggactttgg-tactactggctn 62
|||||||||||||| ||||| |||||||||||||| ||||||||||| || ||||||||
Sbjct: 605 tgcaccctgaccaagcgctcgttcatcaacatgtcacgggactttgggtattactggctc 546
Query: 63 ag-ctcntnatttacctcctcgtcaccgtttgcatcggcacgatctacctggacgtcggc 121
|| ||| | || || |||||||| || |||||||||||||| ||||||||||| || |||
Sbjct: 545 aggctcctgatctatctcctcgtgactgtttgcatcggcacaatctacctggatgttggc 486
Query: 122 accaaatacacatccatcctgg 143
|| |||||||||||||||||||
Sbjct: 485 actaaatacacatccatcctgg 464
Score = 131 bits (66), Expect = 1e-028
Identities = 84/90 (93%)
Strand = Plus / Minus
Query: 142 ggccagggctgcctgctccgcgttcgtctttgggttcgttacgttcatgtccattggagg 201
|||||| ||| |||| || || ||||||||||||||||||||||||||||||||||||||
Sbjct: 327 ggccagagcttcctgttctgcattcgtctttgggttcgttacgttcatgtccattggagg 268
Query: 202 attcccttcgttcgttgaagaaatgaaggt 231
|||||||||||| |||||||||||||||||
Sbjct: 267 attcccttcgtttgttgaagaaatgaaggt 238
>gb|BI075046.1|BI075046 IP1_20_F08.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 399
Score = 208 bits (105), Expect = 7e-052
Identities = 146/160 (91%)
Strand = Plus / Plus
Query: 787 cctcatgatcaagatcaacgaggacgngctgccgtggatccgcggccacatcgcgaggaa 846
|||||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||
Sbjct: 1 cctcatgatcaagatcaacgaggatgtgctgccgtggatccgtggccacatcgcgaggaa 60
Query: 847 gaggatgcagaagaagggccctacccccactatgggcaagacgccttcgctgagaggcta 906
||| ||||||||||| ||||||| |||| | | ||||||||||||||||||||||||||
Sbjct: 61 gagaatgcagaagaaaggccctagtcccagtttcggcaagacgccttcgctgagaggcta 120
Query: 907 cgtcgtcgatccggagctcggttccaacgagggctagagg 946
|| || ||||| |||||||||||||||||||||||||||
Sbjct: 121 tgttgtggatccagagctcggttccaacgagggctagagg 160
Score = 56.0 bits (28), Expect = 7e-006
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 999 ggctcttggtgttatattgtatatttaagatc 1030
||||||||||| ||||||||||||||||||||
Sbjct: 213 ggctcttggtgctatattgtatatttaagatc 244
>gb|CW146289.1|CW146289 104_539_11138914_116_34991_045 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11138914, DNA
sequence
Length = 719
Score = 200 bits (101), Expect = 2e-049
Identities = 143/157 (91%)
Strand = Plus / Plus
Query: 347 tacttcatggtgcgcctccatcctggcttcgagcactacatcttcttcgtcttgaacctg 406
||||| ||||||||||| |||||||| ||||| ||||| |||||||||||||||||||||
Sbjct: 1 tactttatggtgcgcctgcatcctggtttcgaacactatatcttcttcgtcttgaacctg 60
Query: 407 tacgccagcgttacggtggtcgagagcttgatgatggcgattgccagtgtcattccaaat 466
|| |||||||| || |||||||| ||||| |||||||| ||||||||||||||||| |||
Sbjct: 61 tatgccagcgtcacagtggtcgaaagcttaatgatggcaattgccagtgtcattcccaat 120
Query: 467 ttcctcatgggtatcatcataggggccgggattcagg 503
|||||||||||||||||||||||||| || |||||||
Sbjct: 121 ttcctcatgggtatcatcataggggctggaattcagg 157
>gb|CW089874.1|CW089874 104_435_10948960_114_32612_056 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10948960, DNA
sequence
Length = 715
Score = 141 bits (71), Expect = 1e-031
Identities = 173/207 (83%)
Strand = Plus / Minus
Query: 606 tgcagggccagtgccagaacgacatgaagggcctcgcggtcgacaaccaggacccggacc 665
|||||||||||| |||||||||| |||||||||| | |||||||||||||| || |
Sbjct: 490 tgcagggccagtaccagaacgacctgaagggcctgctgttcgacaaccaggacgacgagc 431
Query: 666 aacccaagatccccggggacttcatcctcaagtacatcttccagatcaacgtggaccgtt 725
||||||||||||||||| |||||||| || || | ||||||||| ||||| |||| |
Sbjct: 430 tgcccaagatccccggggagttcatcctggagaacgtgttccagatcgacgtgaaccggt 371
Query: 726 ccaagtggatcgacctgtcggtcattttcagcatgatcttcatctaccgcatcctcttct 785
|||||||| | |||||| | || | |||||||||||| ||||||||||| | |||||||
Sbjct: 370 ccaagtggctggacctggccgtgctgttcagcatgatcgtcatctaccgcctgctcttct 311
Query: 786 tcctcatgatcaagatcaacgaggacg 812
|| | ||||||||||||| ||||||||
Sbjct: 310 tcgtgatgatcaagatcagcgaggacg 284
Score = 107 bits (54), Expect = 2e-021
Identities = 93/106 (87%)
Strand = Plus / Minus
Query: 506 atattcatgctggtctctggctacttcagacttccatacgacatcccgaagcccttttgg 565
|||||||||||||| || || |||||||||||||| | |||||||| |||||||| |||
Sbjct: 713 atattcatgctggtgtcaggttacttcagacttccgcatgacatcccaaagcccttctgg 654
Query: 566 agataccccatgcagtacatcagcttccactactgggcactgcagg 611
|| ||||||||| |||||||||||||||||||||||| ||||||
Sbjct: 653 aggtaccccatgtcctacatcagcttccactactgggcattgcagg 608
>gb|CW089875.1|CW089875 104_435_10948960_116_32613_056 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10948960, DNA
sequence
Length = 709
Score = 141 bits (71), Expect = 1e-031
Identities = 206/251 (82%)
Strand = Plus / Plus
Query: 254 gggcactacggtgtcgcggcgtttgtcatcagcaacaccatctcagccacgccgttcctg 313
|||||||||||||| ||||||||||||||||||||| ||||||| | ||| ||||||
Sbjct: 375 gggcactacggtgtgctggcgtttgtcatcagcaacacactctcagcgatgccattcctg 434
Query: 314 attctgatatgcttcttgtcgggaaccatatgctacttcatggtgcgcctccatcctggc 373
|| ||||| |||| ||||||| || | |||||||||||||||||||| || || |||
Sbjct: 435 atcctgatcaccttcgtgtcgggcacgctgtgctacttcatggtgcgcctgcacccgggc 494
Query: 374 ttcgagcactacatcttcttcgtcttgaacctgtacgccagcgttacggtggtcgagagc 433
||| ||||||| | |||||||| || ||| ||||||||||| || || || ||||||
Sbjct: 495 ttcatgcactacctgttcttcgtgctggccctctacgccagcgtcaccgtcgtggagagc 554
Query: 434 ttgatgatggcgattgccagtgtcattccaaatttcctcatgggtatcatcataggggcc 493
|||||||||| |||||||| || || || || ||||||||||| ||||| || || ||
Sbjct: 555 ctgatgatggccattgccagcgtgatccccaacttcctcatgggcatcattatcggtgca 614
Query: 494 gggattcaggg 504
|||||||||||
Sbjct: 615 gggattcaggg 625
>gb|CW219321.1|CW219321 104_653_11196690_116_37140_073 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11196690, DNA
sequence
Length = 721
Score = 141 bits (71), Expect = 1e-031
Identities = 173/207 (83%)
Strand = Plus / Plus
Query: 606 tgcagggccagtgccagaacgacatgaagggcctcgcggtcgacaaccaggacccggacc 665
|||||||||||| |||||||||| |||||||||| | |||||||||||||| || |
Sbjct: 101 tgcagggccagtaccagaacgacctgaagggcctgctgttcgacaaccaggacgacgagc 160
Query: 666 aacccaagatccccggggacttcatcctcaagtacatcttccagatcaacgtggaccgtt 725
||||||||||||||||| |||||||| || || | ||||||||| ||||| |||| |
Sbjct: 161 tgcccaagatccccggggagttcatcctggagaacgtgttccagatcgacgtgaaccggt 220
Query: 726 ccaagtggatcgacctgtcggtcattttcagcatgatcttcatctaccgcatcctcttct 785
|||||||| | |||||| | || | |||||||||||| ||||||||||| | |||||||
Sbjct: 221 ccaagtggctggacctggccgtgctgttcagcatgatcgtcatctaccgcctgctcttct 280
Query: 786 tcctcatgatcaagatcaacgaggacg 812
|| | ||||||||||||| ||||||||
Sbjct: 281 tcgtgatgatcaagatcagcgaggacg 307
>gb|CW434509.1|CW434509 fsbb001f150d22f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f150d22, DNA
sequence
Length = 635
Score = 139 bits (70), Expect = 6e-031
Identities = 125/142 (88%), Gaps = 2/142 (1%)
Strand = Plus / Minus
Query: 4 tgcaccctgaccaancgctccttcatcaacatgtcgcgggactttgg-tactactggctn 62
|||||||||||||| ||||| |||||||||||||| ||||||||||| || ||||||||
Sbjct: 151 tgcaccctgaccaagcgctcgttcatcaacatgtcacgggactttgggtattactggctc 92
Query: 63 ag-ctcntnatttacctcctcgtcaccgtttgcatcggcacgatctacctggacgtcggc 121
|| ||| | || || |||||||| || |||||||||||||| ||||||||||| || |||
Sbjct: 91 aggctcctgatctatctcctcgtgactgtttgcatcggcacaatctacctggatgttggc 32
Query: 122 accaaatacacatccatcctgg 143
|| |||||||||||||||||||
Sbjct: 31 actaaatacacatccatcctgg 10
>gb|CW434670.1|CW434670 fsbb001f150h18f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f150h18, DNA
sequence
Length = 642
Score = 139 bits (70), Expect = 6e-031
Identities = 125/142 (88%), Gaps = 2/142 (1%)
Strand = Plus / Minus
Query: 4 tgcaccctgaccaancgctccttcatcaacatgtcgcgggactttgg-tactactggctn 62
|||||||||||||| ||||| |||||||||||||| ||||||||||| || ||||||||
Sbjct: 151 tgcaccctgaccaagcgctcgttcatcaacatgtcacgggactttgggtattactggctc 92
Query: 63 ag-ctcntnatttacctcctcgtcaccgtttgcatcggcacgatctacctggacgtcggc 121
|| ||| | || || |||||||| || |||||||||||||| ||||||||||| || |||
Sbjct: 91 aggctcctgatctatctcctcgtgactgtttgcatcggcacaatctacctggatgttggc 32
Query: 122 accaaatacacatccatcctgg 143
|| |||||||||||||||||||
Sbjct: 31 actaaatacacatccatcctgg 10
>gb|CW295698.1|CW295698 104_777_11461084_116_35623_014 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11461084, DNA
sequence
Length = 382
Score = 131 bits (66), Expect = 1e-028
Identities = 165/198 (83%)
Strand = Plus / Plus
Query: 606 tgcagggccagtgccagaacgacatgaagggcctcgcggtcgacaaccaggacccggacc 665
|||||||||||| |||||||||| |||||||||| | |||||||||||||| || |
Sbjct: 181 tgcagggccagtaccagaacgacctgaagggcctgctgttcgacaaccaggacgacgagc 240
Query: 666 aacccaagatccccggggacttcatcctcaagtacatcttccagatcaacgtggaccgtt 725
||||||||||||||||| |||||||| || || | ||||||||| ||||| |||| |
Sbjct: 241 tgcccaagatccccggggagttcatcctggagaacgtgttccagatcgacgtgaaccggt 300
Query: 726 ccaagtggatcgacctgtcggtcattttcagcatgatcttcatctaccgcatcctcttct 785
|||||||| | |||||| | || | |||||||||||| ||||||||||| | |||||||
Sbjct: 301 ccaagtggctggacctggccgtgctgttcagcatgatcgtcatctaccgcctgctcttct 360
Query: 786 tcctcatgatcaagatca 803
|| | |||||||||||||
Sbjct: 361 tcgtgatgatcaagatca 378
Score = 69.9 bits (35), Expect = 4e-010
Identities = 56/63 (88%)
Strand = Plus / Plus
Query: 549 tcccgaagcccttttggagataccccatgcagtacatcagcttccactactgggcactgc 608
|||| |||||||| ||||| ||||||||| |||||||||||||||||||||||| |||
Sbjct: 1 tcccaaagcccttctggaggtaccccatgtcctacatcagcttccactactgggcattgc 60
Query: 609 agg 611
|||
Sbjct: 61 agg 63
>gb|BZ338769.1|BZ338769 ia97g11.b1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone ia97g11 5', DNA sequence
Length = 707
Score = 129 bits (65), Expect = 6e-028
Identities = 92/101 (91%)
Strand = Plus / Plus
Query: 403 cctgtacgccagcgttacggtggtcgagagcttgatgatggcgattgccagtgtcattcc 462
|||||| |||||||| || |||||||| ||||| |||||||| |||||||||||||||||
Sbjct: 1 cctgtatgccagcgtcacagtggtcgaaagcttaatgatggcaattgccagtgtcattcc 60
Query: 463 aaatttcctcatgggtatcatcataggggccgggattcagg 503
||||||||||||||||||||||||||||| || |||||||
Sbjct: 61 caatttcctcatgggtatcatcataggggctggaattcagg 101
>gb|BG947711.1|BG947711 IP1_8_B08.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 515
Score = 113 bits (57), Expect = 3e-023
Identities = 123/145 (84%)
Strand = Plus / Plus
Query: 668 cccaagatccccggggacttcatcctcaagtacatcttccagatcaacgtggaccgttcc 727
||||||||||||||||| |||||||| || || | ||||||||| ||||| |||| |||
Sbjct: 30 cccaagatccccggggagttcatcctggagaacgtgttccagatcgacgtgaaccggtcc 89
Query: 728 aagtggatcgacctgtcggtcattttcagcatgatcttcatctaccgcatcctcttcttc 787
|||||| | |||||| | || | |||||||||||| ||||||||||| | |||||||||
Sbjct: 90 aagtggctggacctggccgtgctgttcagcatgatcgtcatctaccgcctgctcttcttc 149
Query: 788 ctcatgatcaagatcaacgaggacg 812
| ||||||||||||| ||||||||
Sbjct: 150 gtgatgatcaagatcagcgaggacg 174
>gb|CW050711.1|CW050711 104_290_10514813_114_30195 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10514813, DNA
sequence
Length = 234
Score = 111 bits (56), Expect = 1e-022
Identities = 98/112 (87%)
Strand = Plus / Minus
Query: 500 cagggaatattcatgctggtctctggctacttcagacttccatacgacatcccgaagccc 559
||||| |||||||||||||| || || |||||||||||||| | |||||||| ||||||
Sbjct: 145 caggggatattcatgctggtgtcaggttacttcagacttccgcatgacatcccaaagccc 86
Query: 560 ttttggagataccccatgcagtacatcagcttccactactgggcactgcagg 611
|| ||||| ||||||||| |||||||||||||||||||||||| ||||||
Sbjct: 85 ttctggaggtaccccatgtcctacatcagcttccactactgggcattgcagg 34
>gb|AW284745.1|AW284745 LG1_239_A01.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 476
Score = 105 bits (53), Expect = 8e-021
Identities = 119/141 (84%)
Strand = Plus / Plus
Query: 668 cccaagatccccggggacttcatcctcaagtacatcttccagatcaacgtggaccgttcc 727
||||||||||||||||| |||||||| || || | ||||||||| ||||| |||| |||
Sbjct: 5 cccaagatccccggggagttcatcctggagaacgtgttccagatcgacgtgaaccggtcc 64
Query: 728 aagtggatcgacctgtcggtcattttcagcatgatcttcatctaccgcatcctcttcttc 787
|||||| | |||||| | || | |||||||||||| ||||||||||| | |||||||||
Sbjct: 65 aagtggctggacctggccgtgctgttcagcatgatcgtcatctaccgcctgctcttcttc 124
Query: 788 ctcatgatcaagatcaacgag 808
| ||||||||||||| ||||
Sbjct: 125 gtgatgatcaagatcagcgag 145
>gb|BG411401.1|BG411401 EM1_57_G10.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 444
Score = 105 bits (53), Expect = 8e-021
Identities = 122/145 (84%)
Strand = Plus / Plus
Query: 668 cccaagatccccggggacttcatcctcaagtacatcttccagatcaacgtggaccgttcc 727
||||||||||||||||| |||||||| || || | ||||||||| ||||| ||| |||
Sbjct: 4 cccaagatccccggggagttcatcctggagaacgtgttccagatcgacgtgatccggtcc 63
Query: 728 aagtggatcgacctgtcggtcattttcagcatgatcttcatctaccgcatcctcttcttc 787
|||||| | |||||| | || | |||||||||||| ||||||||||| | |||||||||
Sbjct: 64 aagtggctggacctggccgtgctgttcagcatgatcgtcatctaccgcctgctcttcttc 123
Query: 788 ctcatgatcaagatcaacgaggacg 812
| ||||||||||||| ||||||||
Sbjct: 124 gtgatgatcaagatcatcgaggacg 148
>gb|CL155339.1|CL155339 104_341_10782058_114_31471_154 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10782058, DNA
sequence
Length = 423
Score = 73.8 bits (37), Expect = 3e-011
Identities = 67/77 (87%)
Strand = Plus / Minus
Query: 500 cagggaatattcatgctggtctctggctacttcagacttccatacgacatcccgaagccc 559
||||| |||||||||||||| || || |||||||||||||| | |||||||| ||||||
Sbjct: 77 caggggatattcatgctggtgtcaggttacttcagacttccgcatgacatcccaaagccc 18
Query: 560 ttttggagataccccat 576
|| ||||| ||||||||
Sbjct: 17 ttctggaggtaccccat 1
Score = 65.9 bits (33), Expect = 7e-009
Identities = 84/101 (83%)
Strand = Plus / Minus
Query: 403 cctgtacgccagcgttacggtggtcgagagcttgatgatggcgattgccagtgtcattcc 462
||||||||||||||| || || || |||| | |||||||||| |||||||| || || ||
Sbjct: 380 cctgtacgccagcgtcaccgtcgtggagaacctgatgatggccattgccagcgtgatccc 321
Query: 463 aaatttcctcatgggtatcatcataggggccgggattcagg 503
|| ||||||||||| ||||| || || || ||||||||||
Sbjct: 320 caacttcctcatgggcatcattatcggtgcagggattcagg 280
>gb|CW481449.1|CW481449 fsbb001f241a16k0 Sorghum methylation filtered library (LibID:
104) Sorghum bicolor genomic clone fsbb001f241a16, DNA
sequence
Length = 666
Score = 56.0 bits (28), Expect = 7e-006
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 4 tgcaccctgaccaancgctccttcatcaacatgtc 38
|||||||||||||| ||||| ||||||||||||||
Sbjct: 47 tgcaccctgaccaagcgctcgttcatcaacatgtc 13
>gb|BH246250.1|BH246250 pSB1859.2 S. bicolor BTx623 PstI-digested total genomic DNA library
Sorghum bicolor genomic clone pSB1859, DNA sequence
Length = 436
Score = 54.0 bits (27), Expect = 3e-005
Identities = 69/83 (83%)
Strand = Plus / Minus
Query: 182 acgttcatgtccattggaggattcccttcgttcgttgaagaaatgaaggtcttccagcgg 241
||||||||| |||| || || ||||| |||||||| || || |||||| ||||| |||
Sbjct: 186 acgttcatggccatcggcggcttcccgtcgttcgtggaggacatgaagatcttcggtcgg 127
Query: 242 gaacggctgaacgggcactacgg 264
|| |||||||||||||||||||
Sbjct: 126 gagaggctgaacgggcactacgg 104
>gb|CW129885.1|CW129885 104_512_11114810_148_34775_013 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11114810, DNA
sequence
Length = 676
Score = 54.0 bits (27), Expect = 3e-005
Identities = 69/83 (83%)
Strand = Plus / Minus
Query: 182 acgttcatgtccattggaggattcccttcgttcgttgaagaaatgaaggtcttccagcgg 241
||||||||| |||| || || ||||| |||||||| || || |||||| ||||| |||
Sbjct: 221 acgttcatggccatcggcggcttcccgtcgttcgtggaggacatgaagatcttcggtcgg 162
Query: 242 gaacggctgaacgggcactacgg 264
|| |||||||||||||||||||
Sbjct: 161 gagaggctgaacgggcactacgg 139
>gb|CW251891.1|CW251891 104_714_11224187_116_35066_036 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11224187, DNA
sequence
Length = 617
Score = 54.0 bits (27), Expect = 3e-005
Identities = 69/83 (83%)
Strand = Plus / Minus
Query: 182 acgttcatgtccattggaggattcccttcgttcgttgaagaaatgaaggtcttccagcgg 241
||||||||| |||| || || ||||| |||||||| || || |||||| ||||| |||
Sbjct: 215 acgttcatggccatcggcggcttcccgtcgttcgtggaggacatgaagatcttcggtcgg 156
Query: 242 gaacggctgaacgggcactacgg 264
|| |||||||||||||||||||
Sbjct: 155 gagaggctgaacgggcactacgg 133
>gb|CW273637.1|CW273637 104_746_11404006_148_35367_091 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11404006, DNA
sequence
Length = 717
Score = 54.0 bits (27), Expect = 3e-005
Identities = 69/83 (83%)
Strand = Plus / Minus
Query: 182 acgttcatgtccattggaggattcccttcgttcgttgaagaaatgaaggtcttccagcgg 241
||||||||| |||| || || ||||| |||||||| || || |||||| ||||| |||
Sbjct: 551 acgttcatggccatcggcggcttcccgtcgttcgtggaggacatgaagatcttcggtcgg 492
Query: 242 gaacggctgaacgggcactacgg 264
|| |||||||||||||||||||
Sbjct: 491 gagaggctgaacgggcactacgg 469
>gb|CW458366.1|CW458366 fsbb001f204j23f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f204j23, DNA
sequence
Length = 557
Score = 54.0 bits (27), Expect = 3e-005
Identities = 69/83 (83%)
Strand = Plus / Plus
Query: 182 acgttcatgtccattggaggattcccttcgttcgttgaagaaatgaaggtcttccagcgg 241
||||||||| |||| || || ||||| |||||||| || || |||||| ||||| |||
Sbjct: 90 acgttcatggccatcggcggcttcccgtcgttcgtggaggacatgaagatcttcggtcgg 149
Query: 242 gaacggctgaacgggcactacgg 264
|| |||||||||||||||||||
Sbjct: 150 gagaggctgaacgggcactacgg 172
>gb|CW232627.1|CW232627 104_685_11212918_148_37363_089 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11212918, DNA
sequence
Length = 617
Score = 50.1 bits (25), Expect = 4e-004
Identities = 67/81 (82%)
Strand = Plus / Minus
Query: 182 acgttcatgtccattggaggattcccttcgttcgttgaagaaatgaaggtcttccagcgg 241
||||||||| |||| || || ||||| |||||||| || || |||||| ||||| |||
Sbjct: 218 acgttcatggccatcggcggcttcccgtcgttcgtggaggacatgaagatcttcggtcgg 159
Query: 242 gaacggctgaacgggcactac 262
|| |||||||||||||||||
Sbjct: 158 gagaggctgaacgggcactac 138
>gb|CW118768.1|CW118768 104_495_11108388_148_34631_042 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11108388, DNA
sequence
Length = 730
Score = 44.1 bits (22), Expect = 0.025
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 194 attggaggattcccttcgttcgttgaagaaatgaaggt 231
|||||||||||||| || ||||| || |||||||||||
Sbjct: 329 attggaggattcccatccttcgtagaggaaatgaaggt 292
>gb|CF770107.1|CF770107 DSBF1_5_F01.g1_A010 Drought-stressed before flowering Sorghum
bicolor cDNA clone DSBF1_5_F01_A010 3', mRNA sequence
Length = 286
Score = 42.1 bits (21), Expect = 0.10
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 230 gtcttccagcgggaacggctg 250
|||||||||||||||||||||
Sbjct: 34 gtcttccagcgggaacggctg 14
>gb|CW131812.1|CW131812 104_514_11115874_148_34791_033 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11115874, DNA
sequence
Length = 613
Score = 40.1 bits (20), Expect = 0.40
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 695 aagtacatcttccagatcaa 714
||||||||||||||||||||
Sbjct: 123 aagtacatcttccagatcaa 142
>gb|CW212690.1|CW212690 104_644_11191155_148_37027_016 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11191155, DNA
sequence
Length = 709
Score = 40.1 bits (20), Expect = 0.40
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 695 aagtacatcttccagatcaa 714
||||||||||||||||||||
Sbjct: 478 aagtacatcttccagatcaa 497
>gb|CW420709.1|CW420709 fsbb001f128c13f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f128c13, DNA
sequence
Length = 602
Score = 40.1 bits (20), Expect = 0.40
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 695 aagtacatcttccagatcaa 714
||||||||||||||||||||
Sbjct: 559 aagtacatcttccagatcaa 578
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 248,258
Number of Sequences: 832831
Number of extensions: 248258
Number of successful extensions: 66450
Number of sequences better than 0.5: 46
Number of HSP's better than 0.5 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 66349
Number of HSP's gapped (non-prelim): 92
length of query: 1030
length of database: 491,359,669
effective HSP length: 20
effective length of query: 1010
effective length of database: 474,703,049
effective search space: 479450079490
effective search space used: 479450079490
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)