BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3871878.2.1
(950 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF427897.1|CF427897 PH1_11_C10.g1_A002 Phosphorous-defic... 753 0.0
gb|CD204431.1|CD204431 HS1_7_D05.g1_A012 Heat-shocked seedl... 737 0.0
gb|CW049343.1|CW049343 104_288_10513970_114_30200 Sorghum m... 420 e-115
gb|CX622942.1|CX622942 GABR1_66_G10.g1_A002 GA- or brassino... 176 2e-042
gb|BI245833.1|BI245833 IP1_64_A10.b1_A002 Immature pannicle... 170 2e-040
gb|BI211916.1|BI211916 IP1_62_A09.b1_A002 Immature pannicle... 165 9e-039
gb|CW259328.1|CW259328 104_725_11228364_116_35183_038 Sorgh... 155 9e-036
gb|CW295435.1|CW295435 104_776_11460927_148_37441_052 Sorgh... 155 9e-036
gb|BG948032.1|BG948032 IP1_8_E06.b1_A002 Immature pannicle ... 145 9e-033
gb|BM322440.1|BM322440 PIC1_4_G12.b1_A002 Pathogen-infected... 145 9e-033
gb|BM324178.1|BM324178 PIC1_25_A12.b1_A002 Pathogen-infecte... 145 9e-033
gb|CX612323.1|CX612323 GABR1_1_F11.g1_A002 GA- or brassinol... 145 9e-033
gb|CW065182.1|CW065182 104_311_10522997_114_30122 Sorghum m... 133 3e-029
gb|BM324158.1|BM324158 PIC1_25_B12.b1_A002 Pathogen-infecte... 131 1e-028
gb|CW077532.1|CW077532 104_382_10892872_148_31762_088 Sorgh... 125 8e-027
gb|CN125411.1|CN125411 RHOH1_10_H10.g1_A002 Acid- and alkal... 121 1e-025
gb|CX622936.1|CX622936 GABR1_66_G03.g1_A002 GA- or brassino... 121 1e-025
gb|CX623284.1|CX623284 GABR1_68_F11.g1_A002 GA- or brassino... 121 1e-025
gb|CW045200.1|CW045200 104_281_10509415_115_30234 Sorghum m... 115 8e-024
gb|CF489127.1|CF489127 POL1_54_E06.g1_A002 Pollen Sorghum b... 113 3e-023
gb|CW399876.1|CW399876 fsbb001f089o08k0 Sorghum methylation... 109 5e-022
gb|CD222221.1|CD222221 CCC1_2_E05.g1_A007 Callus culture/ce... 107 2e-021
gb|CW251425.1|CW251425 104_714_11223922_148_35073_047 Sorgh... 103 3e-020
gb|CW252977.1|CW252977 104_716_11224822_148_35099_089 Sorgh... 101 1e-019
gb|BG050791.1|BG050791 FM1_70_F06.b1_A003 Floral-Induced Me... 100 5e-019
gb|BI098408.1|BI098408 IP1_32_A01.b1_A002 Immature pannicle... 100 5e-019
gb|CD231000.1|CD231000 SS1_7_A08.g1_A012 Salt-stressed seed... 100 5e-019
gb|CD231740.1|CD231740 SS1_23_B08.g1_A012 Salt-stressed see... 100 5e-019
gb|CD231767.1|CD231767 SS1_23_F08.g1_A012 Salt-stressed see... 100 5e-019
gb|CF427742.1|CF427742 PH1_10_E03.g1_A002 Phosphorous-defic... 100 5e-019
gb|CF430354.1|CF430354 PH1_27_G09.g1_A002 Phosphorous-defic... 100 5e-019
gb|CF430487.1|CF430487 PH1_28_A03.g1_A002 Phosphorous-defic... 100 5e-019
gb|CF432706.1|CF432706 NIT1_18_B01.g1_A002 Nitrogen-deficie... 100 5e-019
gb|CF433668.1|CF433668 NIT1_28_C11.g1_A002 Nitrogen-deficie... 100 5e-019
gb|CF433901.1|CF433901 NIT1_30_D07.g1_A002 Nitrogen-deficie... 100 5e-019
gb|CF434004.1|CF434004 NIT1_31_D06.g1_A002 Nitrogen-deficie... 100 5e-019
gb|CN125876.1|CN125876 RHOH1_13_H02.g1_A002 Acid- and alkal... 100 5e-019
gb|CN128624.1|CN128624 RHOH1_30_D09.g1_A002 Acid- and alkal... 100 5e-019
gb|CN141132.1|CN141132 OX1_49_B06.g1_A002 Oxidatively-stres... 100 5e-019
gb|CX611949.1|CX611949 ANR1_27_D08.g1_A002 Anaerobic roots ... 100 5e-019
gb|CX615535.1|CX615535 GABR1_20_E09.g1_A002 GA- or brassino... 100 5e-019
gb|CX618964.1|CX618964 GABR1_42_E12.g1_A002 GA- or brassino... 100 5e-019
gb|CX622038.1|CX622038 GABR1_61_D10.g2_A002 GA- or brassino... 100 5e-019
gb|CX615385.1|CX615385 GABR1_19_G09.g1_A002 GA- or brassino... 98 2e-018
gb|CW404394.1|CW404394 fsbb001f096i08f0 Sorghum methylation... 96 7e-018
gb|CD212312.1|CD212312 HS1_30_E07.g1_A012 Heat-shocked seed... 94 3e-017
gb|CD225279.1|CD225279 CCC1_39_H04.g1_A007 Callus culture/c... 94 3e-017
gb|BG322453.1|BG322453 EM1_28_B08.b1_A002 Embryo 1 (EM1) So... 92 1e-016
gb|CF430476.1|CF430476 PH1_28_D01.g1_A002 Phosphorous-defic... 92 1e-016
gb|CX606371.1|CX606371 ANR1_2_D11.g1_A002 Anaerobic roots S... 92 1e-016
gb|CX607777.1|CX607777 ANR1_30_E03.g1_A002 Anaerobic roots ... 92 1e-016
gb|CL176063.1|CL176063 104_382_10892872_116_31763_088 Sorgh... 90 4e-016
gb|CW141685.1|CW141685 104_532_11136444_116_34933_036 Sorgh... 90 4e-016
gb|CW141686.1|CW141686 104_532_11136444_148_34929_036 Sorgh... 90 4e-016
gb|CW251424.1|CW251424 104_714_11223922_116_35069_047 Sorgh... 90 4e-016
gb|AW672136.1|AW672136 LG1_357_D04.b1_A002 Light Grown 1 (L... 90 4e-016
gb|CD429478.1|CD429478 ETH1_4_B06.g1_A002 Ethylene-treated ... 90 4e-016
gb|CF426874.1|CF426874 PH1_2_E09.b1_A002 Phosphorous-defici... 90 4e-016
gb|CD232602.1|CD232602 SS1_46_E09.g1_A012 Salt-stressed see... 84 3e-014
gb|CW049344.1|CW049344 104_288_10513970_115_30199 Sorghum m... 82 1e-013
gb|CW158077.1|CW158077 104_561_11147863_148_36388_020 Sorgh... 82 1e-013
gb|CN128193.1|CN128193 RHOH1_27_E03.g1_A002 Acid- and alkal... 82 1e-013
gb|CW172923.1|CW172923 104_584_11156559_148_36542_058 Sorgh... 68 2e-009
gb|BG560593.1|BG560593 RHIZ2_59_C12.b1_A003 Rhizome2 (RHIZ2... 68 2e-009
gb|BI140682.1|BI140682 IP1_52_D08.b1_A002 Immature pannicle... 64 3e-008
gb|CD224543.1|CD224543 CCC1_34_A05.g1_A007 Callus culture/c... 64 3e-008
gb|CF427085.1|CF427085 PH1_3_C03.g1_A002 Phosphorous-defici... 64 3e-008
gb|BG051084.1|BG051084 FM1_56_B03.b1_A003 Floral-Induced Me... 62 1e-007
gb|BI076040.1|BI076040 IP1_24_F02.b1_A002 Immature pannicle... 62 1e-007
gb|BI351401.1|BI351401 IP1_71_B06.b1_A002 Immature pannicle... 62 1e-007
gb|BE360531.1|BE360531 DG1_64_F10.b1_A002 Dark Grown 1 (DG1... 58 2e-006
gb|BG047632.1|BG047632 OV1_26_C08.b1_A002 Ovary 1 (OV1) Sor... 56 6e-006
gb|CD235302.1|CD235302 SS1_28_C05.g1_A012 Salt-stressed see... 56 6e-006
gb|CF755793.1|CF755793 DSAF1_1_H08.b1_A011 Drought-stressed... 56 6e-006
gb|CN128125.1|CN128125 RHOH1_27_E03.b1_A002 Acid- and alkal... 56 6e-006
gb|CX623197.1|CX623197 GABR1_68_F11.b1_A002 GA- or brassino... 56 6e-006
gb|CW150127.1|CW150127 104_549_11142863_148_36304_090 Sorgh... 54 2e-005
gb|CN125323.1|CN125323 RHOH1_10_H10.b1_A002 Acid- and alkal... 54 2e-005
gb|CW259329.1|CW259329 104_725_11228364_148_35179_038 Sorgh... 52 1e-004
gb|CW295434.1|CW295434 104_776_11460927_116_35616_052 Sorgh... 50 4e-004
gb|BG560459.1|BG560459 RHIZ2_74_F04.b1_A003 Rhizome2 (RHIZ2... 50 4e-004
gb|CL154088.1|CL154088 104_339_10781149_114_31371_013 Sorgh... 46 0.006
gb|CW167536.1|CW167536 104_576_11153655_148_37468_052 Sorgh... 46 0.006
gb|CW307395.1|CW307395 104_795_11468119_116_35727_024 Sorgh... 46 0.006
gb|CW307396.1|CW307396 104_795_11468119_148_35735_024 Sorgh... 46 0.006
gb|CW454087.1|CW454087 fsbb001f198f24k0 Sorghum methylation... 46 0.006
gb|AW284054.2|AW284054 LG1_267_C03.g1_A002 Light Grown 1 (L... 46 0.006
gb|BG048375.1|BG048375 OV1_13_D12.b1_A002 Ovary 1 (OV1) Sor... 46 0.006
gb|BG103380.1|BG103380 RHIZ2_19_E05.b1_A003 Rhizome2 (RHIZ2... 46 0.006
gb|BG487645.1|BG487645 EM1_65_E10.g1_A002 Embryo 1 (EM1) So... 46 0.006
gb|CD219514.1|CD219514 CCC1_57_H09.b1_A007 Callus culture/c... 46 0.006
gb|CD225397.1|CD225397 CCC1_3_H06.b1_A007 Callus culture/ce... 46 0.006
gb|BG559407.1|BG559407 RHIZ2_54_D11.b1_A003 Rhizome2 (RHIZ2... 44 0.023
gb|CD462516.1|CD462516 ETH1_38_E11.b1_A002 Ethylene-treated... 44 0.023
gb|CD462642.1|CD462642 ETH1_38_E11.g1_A002 Ethylene-treated... 44 0.023
gb|CX611045.1|CX611045 ANR1_22_G07.b1_A002 Anaerobic roots ... 44 0.023
gb|CW193010.1|CW193010 104_615_11179334_116_36776_053 Sorgh... 42 0.092
gb|CW475519.1|CW475519 fsbb001f231o15f0 Sorghum methylation... 42 0.092
gb|CW043015.1|CW043015 104_277_10507511_114_30252 Sorghum m... 40 0.36
gb|CW210270.1|CW210270 104_640_11189705_148_36998_069 Sorgh... 40 0.36
gb|CW452611.1|CW452611 fsbb001f193e01f0 Sorghum methylation... 40 0.36
gb|AW671513.1|AW671513 LG1_347_G07.b1_A002 Light Grown 1 (L... 40 0.36
gb|BG050054.1|BG050054 FM1_65_H11.b1_A003 Floral-Induced Me... 40 0.36
gb|BG355522.1|BG355522 EM1_17_E01.b1_A002 Embryo 1 (EM1) So... 40 0.36
gb|CB928832.1|CB928832 ABA1_24_F09.g1_A012 Abscisic acid-tr... 40 0.36
>gb|CF427897.1|CF427897 PH1_11_C10.g1_A002 Phosphorous-deficient seedlings Sorghum bicolor
cDNA clone PH1_11_C10_A002 5', mRNA sequence
Length = 663
Score = 753 bits (380), Expect = 0.0
Identities = 467/496 (94%)
Strand = Plus / Minus
Query: 288 ttgcaccaactcgctttgccagacccaacatattcaaagttcccatgacatttgtcttga 347
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 ttgcaccaattcgctttgccagacccaacatattcaaagttcccatgacatttgtcttga 604
Query: 348 tcgtcttgattgggttatacttgtaatgaacgggcgacgcggggcatgcgaggtggtaga 407
||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||
Sbjct: 603 tcgtcttgattgggttatacttgtagtgcacgggcgacgcggggcacgcgaggtggtaga 544
Query: 408 tccggtcgacataaaagaggattggttcgactacatcgtggcggagcagctcgaaccggg 467
|||||||||| | | ||||||||| ||||| ||||||||||||||||||||||||| ||
Sbjct: 543 tccggtcgacctcgaggaggattggctcgaccacatcgtggcggagcagctcgaacctgg 484
Query: 468 ggttccggaggtggtgcgcgacgttctccttcctgccggtgaagaagttgtcgaccacga 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 ggttccggaggtggtgcgcgacgttctccttcctgccggtgaagaagttgtcgaccacga 424
Query: 528 tcacgctgtccccctgctctaggagccggtcgacgaggtggctgccgacgaaccctgccc 587
||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||
Sbjct: 423 tcacgctgtccccctgctccaggagccggtccacgaggtggctcccgacgaaccctgccc 364
Query: 588 cgcctgtgacgacgacgcggcgctgcggcgggcggaagccggcgggaacaccggagcggg 647
|||| || ||||||||||||||| |||||||||||||||| ||||| |||||||||||||
Sbjct: 363 cgccggtaacgacgacgcggcgcggcggcgggcggaagccagcggggacaccggagcggg 304
Query: 648 tggcgaaggagaagagcgggcgggcgtcggggaggtgggaagacggggagagcgagaggt 707
|||||||||||||||||||||||| || || |||||||| |||||||||||||||||||
Sbjct: 303 cggcgaaggagaagagcgggcgggcatctggcaggtgggaggacggggagagcgagaggt 244
Query: 708 agggccggaggaggaagaaggtggaggcgatgagcgcaccgagcaggacgcacagcaggc 767
||||||||||||||||||||||||||||||||||||| ||||| |||||| | || ||||
Sbjct: 243 agggccggaggaggaagaaggtggaggcgatgagcgcgccgaggaggacgaagaggaggc 184
Query: 768 gctgctcgcggaggac 783
||||||||||||||||
Sbjct: 183 gctgctcgcggaggac 168
Score = 149 bits (75), Expect = 6e-034
Identities = 94/99 (94%), Gaps = 1/99 (1%)
Strand = Plus / Minus
Query: 809 gggcgcgccggcttggcggccttgggagccggtggcgtgcgccggcgatggcgcgtgggt 868
|||||||||||||||||||||||||||||||| | ||||||||| |||||||||||||||
Sbjct: 142 gggcgcgccggcttggcggccttgggagccggcg-cgtgcgccgacgatggcgcgtgggt 84
Query: 869 aggggaagacttgtggagctgcttcatggcgggagagcg 907
||||| ||||||||||||||||||||||||||||||||
Sbjct: 83 gggggaggacttgtggagctgcttcatggcgggagagcg 45
>gb|CD204431.1|CD204431 HS1_7_D05.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA clone
HS1_7_D05_A012 5', mRNA sequence
Length = 653
Score = 737 bits (372), Expect = 0.0
Identities = 466/496 (93%), Gaps = 1/496 (0%)
Strand = Plus / Minus
Query: 289 tgcaccaactcgctttgccagacccaa-catattcaaagttcccatgacatttgtcttga 347
|||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 653 tgcaccaattcgctttgccagacccaaacatattcaaagttcccatgacatttgtcttga 594
Query: 348 tcgtcttgattgggttatacttgtaatgaacgggcgacgcggggcatgcgaggtggtaga 407
||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||
Sbjct: 593 tcgtcttgattgggttatacttgtagtgcacgggcgacgcggggcacgcgaggtggtaga 534
Query: 408 tccggtcgacataaaagaggattggttcgactacatcgtggcggagcagctcgaaccggg 467
|||||||||| | | ||||||||| ||||| ||||||||||||||||||||||||| ||
Sbjct: 533 tccggtcgacctcgaggaggattggctcgaccacatcgtggcggagcagctcgaacctgg 474
Query: 468 ggttccggaggtggtgcgcgacgttctccttcctgccggtgaagaagttgtcgaccacga 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 ggttccggaggtggtgcgcgacgttctccttcctgccggtgaagaagttgtcgaccacga 414
Query: 528 tcacgctgtccccctgctctaggagccggtcgacgaggtggctgccgacgaaccctgccc 587
||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||
Sbjct: 413 tcacgctgtccccctgctccaggagccggtccacgaggtggctcccgacgaaccctgccc 354
Query: 588 cgcctgtgacgacgacgcggcgctgcggcgggcggaagccggcgggaacaccggagcggg 647
|||| || ||||||||||||||| |||||||||||||||| ||||| |||||||||||||
Sbjct: 353 cgccggtaacgacgacgcggcgcggcggcgggcggaagccagcggggacaccggagcggg 294
Query: 648 tggcgaaggagaagagcgggcgggcgtcggggaggtgggaagacggggagagcgagaggt 707
|||||||||||||||||||||||| || || |||||||| |||||||||||||||||||
Sbjct: 293 cggcgaaggagaagagcgggcgggcatctggcaggtgggaggacggggagagcgagaggt 234
Query: 708 agggccggaggaggaagaaggtggaggcgatgagcgcaccgagcaggacgcacagcaggc 767
||||||||||||||||||||||||||||||||||||| ||||| |||||| | || ||||
Sbjct: 233 agggccggaggaggaagaaggtggaggcgatgagcgcgccgaggaggacgaagaggaggc 174
Query: 768 gctgctcgcggaggac 783
||||||||||||||||
Sbjct: 173 gctgctcgcggaggac 158
Score = 149 bits (75), Expect = 6e-034
Identities = 94/99 (94%), Gaps = 1/99 (1%)
Strand = Plus / Minus
Query: 809 gggcgcgccggcttggcggccttgggagccggtggcgtgcgccggcgatggcgcgtgggt 868
|||||||||||||||||||||||||||||||| | ||||||||| |||||||||||||||
Sbjct: 132 gggcgcgccggcttggcggccttgggagccggcg-cgtgcgccgacgatggcgcgtgggt 74
Query: 869 aggggaagacttgtggagctgcttcatggcgggagagcg 907
||||| ||||||||||||||||||||||||||||||||
Sbjct: 73 gggggaggacttgtggagctgcttcatggcgggagagcg 35
>gb|CW049343.1|CW049343 104_288_10513970_114_30200 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10513970, DNA
sequence
Length = 572
Score = 420 bits (212), Expect = e-115
Identities = 268/287 (93%)
Strand = Plus / Minus
Query: 497 ttcctgccggtgaagaagttgtcgaccacgatcacgctgtccccctgctctaggagccgg 556
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 572 ttcctgccggtgaagaagttgtcgaccacgatcacgctgtccccctgctccaggagccgg 513
Query: 557 tcgacgaggtggctgccgacgaaccctgccccgcctgtgacgacgacgcggcgctgcggc 616
|| ||||||||||| | |||||||||||||||||| || ||||||||||||||| |||||
Sbjct: 512 tccacgaggtggctccngacgaaccctgccccgccggtaacgacgacgcggcgcggcggc 453
Query: 617 gggcggaagccggcgggaacaccggagcgggtggcgaaggagaagagcgggcgggcgtcg 676
||||||||||| ||||| ||||||||||||| |||||||||||||||||||||||| ||
Sbjct: 452 gggcggaagccagcggggacaccggagcgggcggcgaaggagaagagcgggcgggcatct 393
Query: 677 gggaggtgggaagacggggagagcgagaggtagggccggaggaggaagaaggtggaggcg 736
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 ggcaggtgggaggacggggagagcgagaggtagggccggaggaggaagaaggtggaggcg 333
Query: 737 atgagcgcaccgagcaggacgcacagcaggcgctgctcgcggaggac 783
|||||||| ||||| |||||| | || ||||||||||||||||||||
Sbjct: 332 atgagcgcgccgaggaggacgaagaggaggcgctgctcgcggaggac 286
Score = 149 bits (75), Expect = 6e-034
Identities = 94/99 (94%), Gaps = 1/99 (1%)
Strand = Plus / Minus
Query: 809 gggcgcgccggcttggcggccttgggagccggtggcgtgcgccggcgatggcgcgtgggt 868
|||||||||||||||||||||||||||||||| | ||||||||| |||||||||||||||
Sbjct: 260 gggcgcgccggcttggcggccttgggagccggcg-cgtgcgccgacgatggcgcgtgggt 202
Query: 869 aggggaagacttgtggagctgcttcatggcgggagagcg 907
||||| ||||||||||||||||||||||||||||||||
Sbjct: 201 gggggaggacttgtggagctgcttcatggcgggagagcg 163
>gb|CX622942.1|CX622942 GABR1_66_G10.g1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_66_G10_A002 5', mRNA sequence
Length = 265
Score = 176 bits (89), Expect = 2e-042
Identities = 116/125 (92%)
Strand = Plus / Minus
Query: 659 aagagcgggcgggcgtcggggaggtgggaagacggggagagcgagaggtagggccggagg 718
|||||||||||||| || || |||||||| ||||||||||||||||||||||||||||||
Sbjct: 265 aagagcgggcgggcatctggcaggtgggaggacggggagagcgagaggtagggccggagg 206
Query: 719 aggaagaaggtggaggcgatgagcgcaccgagcaggacgcacagcaggcgctgctcgcgg 778
|||||||||||||||||||||||||| ||||| |||||| | || |||||||||||||||
Sbjct: 205 aggaagaaggtggaggcgatgagcgcgccgaggaggacgaagaggaggcgctgctcgcgg 146
Query: 779 aggac 783
|||||
Sbjct: 145 aggac 141
Score = 149 bits (75), Expect = 6e-034
Identities = 94/99 (94%), Gaps = 1/99 (1%)
Strand = Plus / Minus
Query: 809 gggcgcgccggcttggcggccttgggagccggtggcgtgcgccggcgatggcgcgtgggt 868
|||||||||||||||||||||||||||||||| | ||||||||| |||||||||||||||
Sbjct: 115 gggcgcgccggcttggcggccttgggagccggcg-cgtgcgccgacgatggcgcgtgggt 57
Query: 869 aggggaagacttgtggagctgcttcatggcgggagagcg 907
||||| ||||||||||||||||||||||||||||||||
Sbjct: 56 gggggaggacttgtggagctgcttcatggcgggagagcg 18
>gb|BI245833.1|BI245833 IP1_64_A10.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 481
Score = 170 bits (86), Expect = 2e-040
Identities = 98/102 (96%)
Strand = Plus / Minus
Query: 18 gttgtcttcgtagtgcctgtgcaacaaaattgctgaccacgcggccatcatcgagacaca 77
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct: 481 gttgtcttcgcagtgcctgtgcaacaaaattgctgacgacgcggccatcatcgaggcaca 422
Query: 78 tacgaggaccatatgtattgaaaatgcgggcaatacgcacct 119
|||||||||||||||||||||||||||| |||||||||||||
Sbjct: 421 tacgaggaccatatgtattgaaaatgcgtgcaatacgcacct 380
>gb|BI211916.1|BI211916 IP1_62_A09.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 480
Score = 165 bits (83), Expect = 9e-039
Identities = 95/99 (95%)
Strand = Plus / Minus
Query: 21 gtcttcgtagtgcctgtgcaacaaaattgctgaccacgcggccatcatcgagacacatac 80
||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct: 478 gtcttcgcagtgcctgtgcaacaaaattgctgacgacgcggccatcatcgaggcacatac 419
Query: 81 gaggaccatatgtattgaaaatgcgggcaatacgcacct 119
||||||||||||||||||||||||| |||||||||||||
Sbjct: 418 gaggaccatatgtattgaaaatgcgtgcaatacgcacct 380
>gb|CW259328.1|CW259328 104_725_11228364_116_35183_038 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11228364, DNA
sequence
Length = 609
Score = 155 bits (78), Expect = 9e-036
Identities = 216/262 (82%)
Strand = Plus / Plus
Query: 345 tgatcgtcttgattgggttatacttgtaatgaacgggcgacgcggggcatgcgaggtggt 404
|||| |||||||| ||||| | ||||| || ||||| ||||||||||| ||||||||||
Sbjct: 331 tgatggtcttgatggggttgaatttgtagtgcacgggggacgcggggcaggcgaggtggt 390
Query: 405 agatccggtcgacataaaagaggattggttcgactacatcgtggcggagcagctcgaacc 464
||||| ||||||| | | ||| || |||||||| || |||||||||| |||||||| |
Sbjct: 391 agatctggtcgacctctaggagaatgggttcgacgacgtcgtggcggatgagctcgaatc 450
Query: 465 gggggttccggaggtggtgcgcgacgttctccttcctgccggtgaagaagttgtcgacca 524
| ||||| |||||||||||||| ||| ||||| | ||| ||||||||||||||||| |
Sbjct: 451 gcgggttgtcgaggtggtgcgcgaggttgtccttgcggcccgtgaagaagttgtcgacga 510
Query: 525 cgatcacgctgtccccctgctctaggagccggtcgacgaggtggctgccgacgaaccctg 584
|||| ||||||||||| | | |||||| ||||||||||||||||| || || || |
Sbjct: 511 cgatgacgctgtccccgcgggcaaggagcttatcgacgaggtggctgccaacaaaacccg 570
Query: 585 ccccgcctgtgacgacgacgcg 606
| ||||| ||||||||||||||
Sbjct: 571 cgccgccggtgacgacgacgcg 592
>gb|CW295435.1|CW295435 104_776_11460927_148_37441_052 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11460927, DNA
sequence
Length = 623
Score = 155 bits (78), Expect = 9e-036
Identities = 216/262 (82%)
Strand = Plus / Plus
Query: 345 tgatcgtcttgattgggttatacttgtaatgaacgggcgacgcggggcatgcgaggtggt 404
|||| |||||||| ||||| | ||||| || ||||| ||||||||||| ||||||||||
Sbjct: 322 tgatggtcttgatggggttgaatttgtagtgcacgggggacgcggggcaggcgaggtggt 381
Query: 405 agatccggtcgacataaaagaggattggttcgactacatcgtggcggagcagctcgaacc 464
||||| ||||||| | | ||| || |||||||| || |||||||||| |||||||| |
Sbjct: 382 agatctggtcgacctctaggagaatgggttcgacgacgtcgtggcggatgagctcgaatc 441
Query: 465 gggggttccggaggtggtgcgcgacgttctccttcctgccggtgaagaagttgtcgacca 524
| ||||| |||||||||||||| ||| ||||| | ||| ||||||||||||||||| |
Sbjct: 442 gcgggttgtcgaggtggtgcgcgaggttgtccttgcggcccgtgaagaagttgtcgacga 501
Query: 525 cgatcacgctgtccccctgctctaggagccggtcgacgaggtggctgccgacgaaccctg 584
|||| ||||||||||| | | |||||| ||||||||||||||||| || || || |
Sbjct: 502 cgatgacgctgtccccgcgggcaaggagcttatcgacgaggtggctgccaacaaaacccg 561
Query: 585 ccccgcctgtgacgacgacgcg 606
| ||||| ||||||||||||||
Sbjct: 562 cgccgccggtgacgacgacgcg 583
>gb|BG948032.1|BG948032 IP1_8_E06.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 596
Score = 145 bits (73), Expect = 9e-033
Identities = 223/273 (81%)
Strand = Plus / Minus
Query: 335 acatttgtcttgatcgtcttgattgggttatacttgtaatgaacgggcgacgcggggcat 394
||||| |||||||| |||||||| ||||| || ||||| || ||||| ||||| |||||
Sbjct: 397 acattggtcttgattgtcttgatggggttgtatttgtagtggacgggggacgccgggcag 338
Query: 395 gcgaggtggtagatccggtcgacataaaagaggattggttcgactacatcgtggcggagc 454
||||||||||||||| ||||||| | | ||||| || ||||| || ||||| |||| |
Sbjct: 337 gcgaggtggtagatctggtcgacctcgagcaggatgggctcgacgacgtcgtgccggatc 278
Query: 455 agctcgaaccgggggttccggaggtggtgcgcgacgttctccttcctgccggtgaagaag 514
| |||||| |||| |||||||||| |||||| ||||| | |||||||||||||
Sbjct: 277 atctcgaagttcgggtcgttgaggtggtgcaggacgttgtccttgcggccggtgaagaag 218
Query: 515 ttgtcgaccacgatcacgctgtccccctgctctaggagccggtcgacgaggtggctgccg 574
|||||||| ||||| |||||||| || |||| ||||| ||||| || ||||||||||||
Sbjct: 217 ttgtcgacgacgatgacgctgtcgccgcgctcgaggaggcggtccaccaggtggctgccg 158
Query: 575 acgaaccctgccccgcctgtgacgacgacgcgg 607
||||| || || ||||| ||||||| |||||||
Sbjct: 157 acgaagccggcgccgccggtgacgaggacgcgg 125
>gb|BM322440.1|BM322440 PIC1_4_G12.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 588
Score = 145 bits (73), Expect = 9e-033
Identities = 223/273 (81%)
Strand = Plus / Minus
Query: 335 acatttgtcttgatcgtcttgattgggttatacttgtaatgaacgggcgacgcggggcat 394
||||| |||||||| |||||||| ||||| || ||||| || ||||| ||||| |||||
Sbjct: 444 acattggtcttgattgtcttgatggggttgtatttgtagtggacgggggacgccgggcag 385
Query: 395 gcgaggtggtagatccggtcgacataaaagaggattggttcgactacatcgtggcggagc 454
||||||||||||||| ||||||| | | ||||| || ||||| || ||||| |||| |
Sbjct: 384 gcgaggtggtagatctggtcgacctcgagcaggatgggctcgacgacgtcgtgccggatc 325
Query: 455 agctcgaaccgggggttccggaggtggtgcgcgacgttctccttcctgccggtgaagaag 514
| |||||| |||| |||||||||| |||||| ||||| | |||||||||||||
Sbjct: 324 atctcgaagttcgggtcgttgaggtggtgcaggacgttgtccttgcggccggtgaagaag 265
Query: 515 ttgtcgaccacgatcacgctgtccccctgctctaggagccggtcgacgaggtggctgccg 574
|||||||| ||||| |||||||| || |||| ||||| ||||| || ||||||||||||
Sbjct: 264 ttgtcgacgacgatgacgctgtcgccgcgctcgaggaggcggtccaccaggtggctgccg 205
Query: 575 acgaaccctgccccgcctgtgacgacgacgcgg 607
||||| || || ||||| ||||||| |||||||
Sbjct: 204 acgaagccggcgccgccggtgacgaggacgcgg 172
>gb|BM324178.1|BM324178 PIC1_25_A12.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 575
Score = 145 bits (73), Expect = 9e-033
Identities = 223/273 (81%)
Strand = Plus / Minus
Query: 335 acatttgtcttgatcgtcttgattgggttatacttgtaatgaacgggcgacgcggggcat 394
||||| |||||||| |||||||| ||||| || ||||| || ||||| ||||| |||||
Sbjct: 516 acattggtcttgattgtcttgatggggttgtatttgtagtggacgggggacgccgggcag 457
Query: 395 gcgaggtggtagatccggtcgacataaaagaggattggttcgactacatcgtggcggagc 454
||||||||||||||| ||||||| | | ||||| || ||||| || ||||| |||| |
Sbjct: 456 gcgaggtggtagatctggtcgacctcgagcaggatgggctcgacgacgtcgtgccggatc 397
Query: 455 agctcgaaccgggggttccggaggtggtgcgcgacgttctccttcctgccggtgaagaag 514
| |||||| |||| |||||||||| |||||| ||||| | |||||||||||||
Sbjct: 396 atctcgaagttcgggtcgttgaggtggtgcaggacgttgtccttgcggccggtgaagaag 337
Query: 515 ttgtcgaccacgatcacgctgtccccctgctctaggagccggtcgacgaggtggctgccg 574
|||||||| ||||| |||||||| || |||| ||||| ||||| || ||||||||||||
Sbjct: 336 ttgtcgacgacgatgacgctgtcgccgcgctcgaggaggcggtccaccaggtggctgccg 277
Query: 575 acgaaccctgccccgcctgtgacgacgacgcgg 607
||||| || || ||||| ||||||| |||||||
Sbjct: 276 acgaagccggcgccgccggtgacgaggacgcgg 244
>gb|CX612323.1|CX612323 GABR1_1_F11.g1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_1_F11_A002 5', mRNA sequence
Length = 777
Score = 145 bits (73), Expect = 9e-033
Identities = 223/273 (81%)
Strand = Plus / Minus
Query: 335 acatttgtcttgatcgtcttgattgggttatacttgtaatgaacgggcgacgcggggcat 394
||||| |||||||| |||||||| ||||| || ||||| || ||||| ||||| |||||
Sbjct: 377 acattggtcttgattgtcttgatggggttgtatttgtagtggacgggggacgccgggcag 318
Query: 395 gcgaggtggtagatccggtcgacataaaagaggattggttcgactacatcgtggcggagc 454
||||||||||||||| ||||||| | | ||||| || ||||| || ||||| |||| |
Sbjct: 317 gcgaggtggtagatctggtcgacctcgagcaggatgggctcgacgacgtcgtgccggatc 258
Query: 455 agctcgaaccgggggttccggaggtggtgcgcgacgttctccttcctgccggtgaagaag 514
| |||||| |||| |||||||||| |||||| ||||| | |||||||||||||
Sbjct: 257 atctcgaagttcgggtcgttgaggtggtgcaggacgttgtccttgcggccggtgaagaag 198
Query: 515 ttgtcgaccacgatcacgctgtccccctgctctaggagccggtcgacgaggtggctgccg 574
|||||||| ||||| |||||||| || |||| ||||| ||||| || ||||||||||||
Sbjct: 197 ttgtcgacgacgatgacgctgtcgccgcgctcgaggaggcggtccaccaggtggctgccg 138
Query: 575 acgaaccctgccccgcctgtgacgacgacgcgg 607
||||| || || ||||| ||||||| |||||||
Sbjct: 137 acgaagccggcgccgccggtgacgaggacgcgg 105
>gb|CW065182.1|CW065182 104_311_10522997_114_30122 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10522997, DNA
sequence
Length = 294
Score = 133 bits (67), Expect = 3e-029
Identities = 214/263 (81%)
Strand = Plus / Minus
Query: 345 tgatcgtcttgattgggttatacttgtaatgaacgggcgacgcggggcatgcgaggtggt 404
|||| |||||||| ||||| || ||||| || ||||| ||||| ||||| ||||||||||
Sbjct: 283 tgattgtcttgatggggttgtatttgtagtggacgggggacgccgggcaggcgaggtggt 224
Query: 405 agatccggtcgacataaaagaggattggttcgactacatcgtggcggagcagctcgaacc 464
||||| ||||||| | | ||||| || ||||| || ||||| |||| || ||||||
Sbjct: 223 agatctggtcgacctcgagcaggatgggctcgacgacgtcgtgccggatcatctcgaagt 164
Query: 465 gggggttccggaggtggtgcgcgacgttctccttcctgccggtgaagaagttgtcgacca 524
|||| |||||||||| |||||| ||||| | ||||||||||||||||||||| |
Sbjct: 163 tcgggtcgttgaggtggtgcaggacgttgtccttgcggccggtgaagaagttgtcgacga 104
Query: 525 cgatcacgctgtccccctgctctaggagccggtcgacgaggtggctgccgacgaaccctg 584
|||| |||||||| || |||| ||||| ||||| || ||||||||||||||||| || |
Sbjct: 103 cgatgacgctgtcgccgcgctcgaggaggcggtccaccaggtggctgccgacgaagccgg 44
Query: 585 ccccgcctgtgacgacgacgcgg 607
| ||||| ||||||| |||||||
Sbjct: 43 cgccgccggtgacgaggacgcgg 21
>gb|BM324158.1|BM324158 PIC1_25_B12.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 505
Score = 131 bits (66), Expect = 1e-028
Identities = 210/258 (81%)
Strand = Plus / Minus
Query: 350 gtcttgattgggttatacttgtaatgaacgggcgacgcggggcatgcgaggtggtagatc 409
|||||||| ||||| || ||||| || ||||| ||||| ||||| |||||||||||||||
Sbjct: 501 gtcttgatggggttgtatttgtagtggacgggggacgccgggcaggcgaggtggtagatc 442
Query: 410 cggtcgacataaaagaggattggttcgactacatcgtggcggagcagctcgaaccggggg 469
||||||| | | ||||| || ||||| || ||||| |||| || |||||| |||
Sbjct: 441 tggtcgacctcgagcaggatgggctcgacgacgtcgtgccggatcatctcgaagttcggg 382
Query: 470 ttccggaggtggtgcgcgacgttctccttcctgccggtgaagaagttgtcgaccacgatc 529
| |||||||||| |||||| ||||| | ||||||||||||||||||||| |||||
Sbjct: 381 tcgttgaggtggtgcaggacgttgtccttgcggccggtgaagaagttgtcgacgacgatg 322
Query: 530 acgctgtccccctgctctaggagccggtcgacgaggtggctgccgacgaaccctgccccg 589
|||||||| || |||| ||||| ||||| || ||||||||||||||||| || || |||
Sbjct: 321 acgctgtcgccgcgctcgaggaggcggtccaccaggtggctgccgacgaagccggcgccg 262
Query: 590 cctgtgacgacgacgcgg 607
|| ||||||| |||||||
Sbjct: 261 ccggtgacgaggacgcgg 244
>gb|CW077532.1|CW077532 104_382_10892872_148_31762_088 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10892872, DNA
sequence
Length = 712
Score = 125 bits (63), Expect = 8e-027
Identities = 195/239 (81%)
Strand = Plus / Minus
Query: 368 ttgtaatgaacgggcgacgcggggcatgcgaggtggtagatccggtcgacataaaagagg 427
||||| || ||||| ||||||||||| ||||||||||||||| ||||||| | | |||
Sbjct: 662 ttgtagtgcacgggggacgcggggcaggcgaggtggtagatctggtcgacctctaggaga 603
Query: 428 attggttcgactacatcgtggcggagcagctcgaaccgggggttccggaggtggtgcgcg 487
| |||||||| || |||||||||| |||||||| || ||||| |||||||||||||
Sbjct: 602 acgggttcgacgacgtcgtggcggatgagctcgaatcgcgggttgtcgaggtggtgcgcg 543
Query: 488 acgttctccttcctgccggtgaagaagttgtcgaccacgatcacgctgtccccctgctct 547
| ||| ||||| | ||| ||||||||||||||| | ||||| ||||||||||| | |
Sbjct: 542 aggttgtccttgcggcccgtgaagaagttgtcgccgacgatgacgctgtccccgcgggca 483
Query: 548 aggagccggtcgacgaggtggctgccgacgaaccctgccccgcctgtgacgacgacgcg 606
|||||| ||||||||||||||||| | || || || ||||| ||||||||||||||
Sbjct: 482 aggagcttatcgacgaggtggctgccatcaaaacccgcgccgccggtgacgacgacgcg 424
Score = 42.1 bits (21), Expect = 0.092
Identities = 60/73 (82%)
Strand = Plus / Minus
Query: 715 gaggaggaagaaggtggaggcgatgagcgcaccgagcaggacgcacagcaggcgctgctc 774
||||| |||||||| |||||||| ||| ||||| ||||| | || |||||||||||
Sbjct: 267 gaggaagaagaaggaggaggcgaggaggaagccgaggcggacgaagaggaggcgctgctc 208
Query: 775 gcggaggacgtag 787
|||||||| ||||
Sbjct: 207 gcggaggaggtag 195
>gb|CN125411.1|CN125411 RHOH1_10_H10.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_10_H10_A002 5', mRNA sequence
Length = 754
Score = 121 bits (61), Expect = 1e-025
Identities = 208/257 (80%)
Strand = Plus / Minus
Query: 335 acatttgtcttgatcgtcttgattgggttatacttgtaatgaacgggcgacgcggggcat 394
||||| |||||||| |||||||| ||||| |||||||| || ||||| || |||||
Sbjct: 646 acattcgtcttgatggtcttgatggggttgtacttgtagtgcacggggctggctgggcag 587
Query: 395 gcgaggtggtagatccggtcgacataaaagaggattggttcgactacatcgtggcggagc 454
|| |||||||||||| ||||||| | | || || || ||||| || |||||||||| |
Sbjct: 586 gcaaggtggtagatctggtcgacctcgagcagtatgggctcgacgacgtcgtggcggatc 527
Query: 455 agctcgaaccgggggttccggaggtggtgcgcgacgttctccttcctgccggtgaagaag 514
| |||||||| ||||||| |||| |||||||| ||||| |||| | || |||||||||
Sbjct: 526 acctcgaacctggggttctggagatggtgcgccacgttgcccttgcgccccgtgaagaag 467
Query: 515 ttgtcgaccacgatcacgctgtccccctgctctaggagccggtcgacgaggtggctgccg 574
||||| ||||||||||||||||| || |||| | |||||||| || |||||||| ||
Sbjct: 466 ttgtccaccacgatcacgctgtcgccgcgctccaccagccggtccaccaggtggctcccc 407
Query: 575 acgaaccctgccccgcc 591
|||||||| || |||||
Sbjct: 406 acgaacccagcgccgcc 390
>gb|CX622936.1|CX622936 GABR1_66_G03.g1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_66_G03_A002 5', mRNA sequence
Length = 685
Score = 121 bits (61), Expect = 1e-025
Identities = 208/257 (80%)
Strand = Plus / Minus
Query: 335 acatttgtcttgatcgtcttgattgggttatacttgtaatgaacgggcgacgcggggcat 394
||||| |||||||| |||||||| ||||| |||||||| || ||||| || |||||
Sbjct: 654 acattcgtcttgatggtcttgatggggttgtacttgtagtgcacggggctggctgggcag 595
Query: 395 gcgaggtggtagatccggtcgacataaaagaggattggttcgactacatcgtggcggagc 454
|| |||||||||||| ||||||| | | || || || ||||| || |||||||||| |
Sbjct: 594 gcaaggtggtagatctggtcgacctcgagcagtatgggctcgacgacgtcgtggcggatc 535
Query: 455 agctcgaaccgggggttccggaggtggtgcgcgacgttctccttcctgccggtgaagaag 514
| |||||||| ||||||| |||| |||||||| ||||| |||| | || |||||||||
Sbjct: 534 acctcgaacctggggttctggagatggtgcgccacgttgcccttgcgccccgtgaagaag 475
Query: 515 ttgtcgaccacgatcacgctgtccccctgctctaggagccggtcgacgaggtggctgccg 574
||||| ||||||||||||||||| || |||| | |||||||| || |||||||| ||
Sbjct: 474 ttgtccaccacgatcacgctgtcgccgcgctccaccagccggtccaccaggtggctcccc 415
Query: 575 acgaaccctgccccgcc 591
|||||||| || |||||
Sbjct: 414 acgaacccagcgccgcc 398
>gb|CX623284.1|CX623284 GABR1_68_F11.g1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_68_F11_A002 5', mRNA sequence
Length = 690
Score = 121 bits (61), Expect = 1e-025
Identities = 208/257 (80%)
Strand = Plus / Minus
Query: 335 acatttgtcttgatcgtcttgattgggttatacttgtaatgaacgggcgacgcggggcat 394
||||| |||||||| |||||||| ||||| |||||||| || ||||| || |||||
Sbjct: 646 acattcgtcttgatggtcttgatggggttgtacttgtagtgcacggggctggctgggcag 587
Query: 395 gcgaggtggtagatccggtcgacataaaagaggattggttcgactacatcgtggcggagc 454
|| |||||||||||| ||||||| | | || || || ||||| || |||||||||| |
Sbjct: 586 gcaaggtggtagatctggtcgacctcgagcagtatgggctcgacgacgtcgtggcggatc 527
Query: 455 agctcgaaccgggggttccggaggtggtgcgcgacgttctccttcctgccggtgaagaag 514
| |||||||| ||||||| |||| |||||||| ||||| |||| | || |||||||||
Sbjct: 526 acctcgaacctggggttctggagatggtgcgccacgttgcccttgcgccccgtgaagaag 467
Query: 515 ttgtcgaccacgatcacgctgtccccctgctctaggagccggtcgacgaggtggctgccg 574
||||| ||||||||||||||||| || |||| | |||||||| || |||||||| ||
Sbjct: 466 ttgtccaccacgatcacgctgtcgccgcgctccaccagccggtccaccaggtggctcccc 407
Query: 575 acgaaccctgccccgcc 591
|||||||| || |||||
Sbjct: 406 acgaacccagcgccgcc 390
>gb|CW045200.1|CW045200 104_281_10509415_115_30234 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10509415, DNA
sequence
Length = 519
Score = 115 bits (58), Expect = 8e-024
Identities = 190/234 (81%)
Strand = Plus / Minus
Query: 345 tgatcgtcttgattgggttatacttgtaatgaacgggcgacgcggggcatgcgaggtggt 404
|||| |||||||| ||||| || ||||| || ||||| ||||| ||||| ||||||||||
Sbjct: 234 tgattgtcttgatggggttgtatttgtagtggacgggggacgccgggcaggcgaggtggt 175
Query: 405 agatccggtcgacataaaagaggattggttcgactacatcgtggcggagcagctcgaacc 464
||||| ||||||| | | ||||| || ||||| || ||||| |||| || ||||||
Sbjct: 174 agatctggtcgacctcgagcaggatgggctcgacgacgtcgtgccggatcatctcgaagt 115
Query: 465 gggggttccggaggtggtgcgcgacgttctccttcctgccggtgaagaagttgtcgacca 524
|||| |||||||||| |||||| ||||| | ||||||||||||||||||||| |
Sbjct: 114 tcgggtcgttgaggtggtgcaggacgttgtccttgcggccggtgaagaagttgtcgacga 55
Query: 525 cgatcacgctgtccccctgctctaggagccggtcgacgaggtggctgccgacga 578
|||| |||||||| || |||| ||||| ||||| || ||||||||||||||||
Sbjct: 54 cgatgacgctgtcgccgcgctcgaggaggcggtccaccaggtggctgccgacga 1
>gb|CF489127.1|CF489127 POL1_54_E06.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_54_E06_A002 5', mRNA sequence
Length = 591
Score = 113 bits (57), Expect = 3e-023
Identities = 114/133 (85%)
Strand = Plus / Minus
Query: 475 gaggtggtgcgcgacgttctccttcctgccggtgaagaagttgtcgaccacgatcacgct 534
|||||||||| |||||| ||||| | ||||||||||||||||||||| ||||| |||||
Sbjct: 566 gaggtggtgcaggacgttgtccttgcggccggtgaagaagttgtcgacgacgatgacgct 507
Query: 535 gtccccctgctctaggagccggtcgacgaggtggctgccgacgaaccctgccccgcctgt 594
||| || |||| ||||| ||||| || ||||||||||||||||| || || ||||| ||
Sbjct: 506 gtcgccgcgctcgaggaggcggtccaccaggtggctgccgacgaagccggcgccgccggt 447
Query: 595 gacgacgacgcgg 607
||||| |||||||
Sbjct: 446 gacgaggacgcgg 434
>gb|CW399876.1|CW399876 fsbb001f089o08k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f089o08, DNA
sequence
Length = 408
Score = 109 bits (55), Expect = 5e-022
Identities = 199/247 (80%)
Strand = Plus / Plus
Query: 345 tgatcgtcttgattgggttatacttgtaatgaacgggcgacgcggggcatgcgaggtggt 404
|||| |||||||| ||||| |||||||| || ||||| || ||||| || |||||||
Sbjct: 15 tgatggtcttgatggggttgtacttgtagtgcacggggctggctgggcaggcaaggtggt 74
Query: 405 agatccggtcgacataaaagaggattggttcgactacatcgtggcggagcagctcgaacc 464
||||| ||||||| | | || || || ||||| || |||||||||| || ||||||||
Sbjct: 75 agatctggtcgacctcgagcagtatgggctcgacgacgtcgtggcggatcacctcgaacc 134
Query: 465 gggggttccggaggtggtgcgcgacgttctccttcctgccggtgaagaagttgtcgacca 524
||||||| |||| |||||||| ||||| |||| | || |||||||||||||| ||||
Sbjct: 135 tggggttctggagatggtgcgccacgttgcccttgcgccccgtgaagaagttgtccacca 194
Query: 525 cgatcacgctgtccccctgctctaggagccggtcgacgaggtggctgccgacgaaccctg 584
||||||||||||| || |||| | |||||||| || |||||||| || |||||||| |
Sbjct: 195 cgatcacgctgtcgccgcgctccaccagccggtccaccaggtggctccccacgaacccag 254
Query: 585 ccccgcc 591
| |||||
Sbjct: 255 cgccgcc 261
>gb|CD222221.1|CD222221 CCC1_2_E05.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_2_E05_A007 5', mRNA sequence
Length = 652
Score = 107 bits (54), Expect = 2e-021
Identities = 150/182 (82%)
Strand = Plus / Minus
Query: 173 ccctcatcataacagctcctaacaccaataggattaacgtgcccccagtatgactccttc 232
|||||||||||||||||||| |||||||| || ||||||| |||||||||| ||| |
Sbjct: 596 ccctcatcataacagctcctgacaccaattgggttaacgttgccccagtatgcctcggtt 537
Query: 233 tgtggatgctcaagtggatcaccataaacttcacttgtgctagtcaacaaaaaccttgca 292
|| ||||||||||| |||||||||||||||||| ||| |||||||||| ||| ||
Sbjct: 536 tgaggatgctcaagcggatcaccataaacttcagaggtggatgtcaacaaaatcctagct 477
Query: 293 ccaactcgctttgccagacccaacatattcaaagttcccatgacatttgtcttgatcgtc 352
||||||| |||||| || |||| ||| || | || || |||||||| |||||||| |||
Sbjct: 476 ccaactctctttgcaagtcccagcatgttgagggtaccaatgacattggtcttgatggtc 417
Query: 353 tt 354
||
Sbjct: 416 tt 415
>gb|CW251425.1|CW251425 104_714_11223922_148_35073_047 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11223922, DNA
sequence
Length = 719
Score = 103 bits (52), Expect = 3e-020
Identities = 145/176 (82%)
Strand = Plus / Minus
Query: 431 ggttcgactacatcgtggcggagcagctcgaaccgggggttccggaggtggtgcgcgacg 490
|||||||| || |||||||||| |||||||| || ||||| ||||||||||||||
Sbjct: 719 ggttcgacgacgtcgtggcggatgagctcgaatcgcgggttgtcgaggtggtgcgcgagt 660
Query: 491 ttctccttcctgccggtgaagaagttgtcgaccacgatcacgctgtccccctgctctagg 550
|| ||||| | ||| ||||||||||||||||| ||||| ||||||||||| | | |||
Sbjct: 659 ttgtccttgcggcccgtgaagaagttgtcgacgacgatgacgctgtccccgcgggcaagg 600
Query: 551 agccggtcgacgaggtggctgccgacgaaccctgccccgcctgtgacgacgacgcg 606
||| ||||||||||||||||| || || || || ||||| ||||||||||||||
Sbjct: 599 agcttatcgacgaggtggctgccaacaaaacccgcgccgccggtgacgacgacgcg 544
Score = 50.1 bits (25), Expect = 4e-004
Identities = 61/73 (83%)
Strand = Plus / Minus
Query: 715 gaggaggaagaaggtggaggcgatgagcgcaccgagcaggacgcacagcaggcgctgctc 774
||||| |||||||| |||||||| ||| ||||| |||||| | || |||||||||||
Sbjct: 387 gaggaagaagaaggaggaggcgaggaggaagccgaggaggacgaagaggaggcgctgctc 328
Query: 775 gcggaggacgtag 787
|||||||| ||||
Sbjct: 327 gcggaggaggtag 315
>gb|CW252977.1|CW252977 104_716_11224822_148_35099_089 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11224822, DNA
sequence
Length = 630
Score = 101 bits (51), Expect = 1e-019
Identities = 165/203 (81%)
Strand = Plus / Minus
Query: 389 gggcatgcgaggtggtagatccggtcgacataaaagaggattggttcgactacatcgtgg 448
||||| || |||||||||||| ||||||| | | || || || ||||| || ||||||
Sbjct: 614 gggcaggcaaggtggtagatctggtcgacctcgagcagtatgggctcgacgacgtcgtgg 555
Query: 449 cggagcagctcgaaccgggggttccggaggtggtgcgcgacgttctccttcctgccggtg 508
|||| || |||||||| ||||||| |||| |||||||| ||||| |||| | || |||
Sbjct: 554 cggatcacctcgaacctggggttctggagatggtgcgccacgttgcccttgcgccccgtg 495
Query: 509 aagaagttgtcgaccacgatcacgctgtccccctgctctaggagccggtcgacgaggtgg 568
||||||||||| ||||||||||||||||| || |||| | |||||||| || ||||||
Sbjct: 494 aagaagttgtccaccacgatcacgctgtcgccgcgctccaccagccggtccaccaggtgg 435
Query: 569 ctgccgacgaaccctgccccgcc 591
|| || |||||||| || |||||
Sbjct: 434 ctccccacgaacccagcgccgcc 412
>gb|BG050791.1|BG050791 FM1_70_F06.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 464
Score = 99.6 bits (50), Expect = 5e-019
Identities = 149/182 (81%)
Strand = Plus / Minus
Query: 173 ccctcatcataacagctcctaacaccaataggattaacgtgcccccagtatgactccttc 232
|||||||||||||||||||| |||||||| || ||||| | |||||||||| ||| |
Sbjct: 339 ccctcatcataacagctcctgacaccaattgggttaacattgccccagtatgcctcggtt 280
Query: 233 tgtggatgctcaagtggatcaccataaacttcacttgtgctagtcaacaaaaaccttgca 292
|| ||||||||||| |||||||||||||||||| ||| |||||||||| ||| ||
Sbjct: 279 tgaggatgctcaagcggatcaccataaacttcagaggtggatgtcaacaaaatcctagct 220
Query: 293 ccaactcgctttgccagacccaacatattcaaagttcccatgacatttgtcttgatcgtc 352
||||||| |||||| || |||| ||| || | || || |||||||| |||||||| |||
Sbjct: 219 ccaactctctttgcaagtcccagcatgttgagggtaccaatgacattggtcttgatggtc 160
Query: 353 tt 354
||
Sbjct: 159 tt 158
>gb|BI098408.1|BI098408 IP1_32_A01.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 468
Score = 99.6 bits (50), Expect = 5e-019
Identities = 149/182 (81%)
Strand = Plus / Minus
Query: 173 ccctcatcataacagctcctaacaccaataggattaacgtgcccccagtatgactccttc 232
|||||||||||||||||||| |||||||| || ||||| | |||||||||| ||| |
Sbjct: 309 ccctcatcataacagctcctgacaccaattgggttaacattgccccagtatgcctcggtt 250
Query: 233 tgtggatgctcaagtggatcaccataaacttcacttgtgctagtcaacaaaaaccttgca 292
|| ||||||||||| |||||||||||||||||| ||| |||||||||| ||| ||
Sbjct: 249 tgaggatgctcaagcggatcaccataaacttcagaggtggatgtcaacaaaatcctagct 190
Query: 293 ccaactcgctttgccagacccaacatattcaaagttcccatgacatttgtcttgatcgtc 352
||||||| |||||| || |||| ||| || | || || |||||||| |||||||| |||
Sbjct: 189 ccaactctctttgcaagtcccagcatgttgagggtaccaatgacattggtcttgatggtc 130
Query: 353 tt 354
||
Sbjct: 129 tt 128
>gb|CD231000.1|CD231000 SS1_7_A08.g1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_7_A08_A012 5', mRNA sequence
Length = 718
Score = 99.6 bits (50), Expect = 5e-019
Identities = 149/182 (81%)
Strand = Plus / Minus
Query: 173 ccctcatcataacagctcctaacaccaataggattaacgtgcccccagtatgactccttc 232
|||||||||||||||||||| |||||||| || ||||| | |||||||||| ||| |
Sbjct: 632 ccctcatcataacagctcctgacaccaattgggttaacattgccccagtatgcctcggtt 573
Query: 233 tgtggatgctcaagtggatcaccataaacttcacttgtgctagtcaacaaaaaccttgca 292
|| ||||||||||| |||||||||||||||||| ||| |||||||||| ||| ||
Sbjct: 572 tgaggatgctcaagcggatcaccataaacttcagaggtggatgtcaacaaaatcctagct 513
Query: 293 ccaactcgctttgccagacccaacatattcaaagttcccatgacatttgtcttgatcgtc 352
||||||| |||||| || |||| ||| || | || || |||||||| |||||||| |||
Sbjct: 512 ccaactctctttgcaagtcccagcatgttgagggtaccaatgacattggtcttgatggtc 453
Query: 353 tt 354
||
Sbjct: 452 tt 451
>gb|CD231740.1|CD231740 SS1_23_B08.g1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_23_B08_A012 5', mRNA sequence
Length = 649
Score = 99.6 bits (50), Expect = 5e-019
Identities = 149/182 (81%)
Strand = Plus / Minus
Query: 173 ccctcatcataacagctcctaacaccaataggattaacgtgcccccagtatgactccttc 232
|||||||||||||||||||| |||||||| || ||||| | |||||||||| ||| |
Sbjct: 639 ccctcatcataacagctcctgacaccaattgggttaacattgccccagtatgcctcggtt 580
Query: 233 tgtggatgctcaagtggatcaccataaacttcacttgtgctagtcaacaaaaaccttgca 292
|| ||||||||||| |||||||||||||||||| ||| |||||||||| ||| ||
Sbjct: 579 tgaggatgctcaagcggatcaccataaacttcagaggtggatgtcaacaaaatcctagct 520
Query: 293 ccaactcgctttgccagacccaacatattcaaagttcccatgacatttgtcttgatcgtc 352
||||||| |||||| || |||| ||| || | || || |||||||| |||||||| |||
Sbjct: 519 ccaactctctttgcaagtcccagcatgttgagggtaccaatgacattggtcttgatggtc 460
Query: 353 tt 354
||
Sbjct: 459 tt 458
>gb|CD231767.1|CD231767 SS1_23_F08.g1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_23_F08_A012 5', mRNA sequence
Length = 720
Score = 99.6 bits (50), Expect = 5e-019
Identities = 149/182 (81%)
Strand = Plus / Minus
Query: 173 ccctcatcataacagctcctaacaccaataggattaacgtgcccccagtatgactccttc 232
|||||||||||||||||||| |||||||| || ||||| | |||||||||| ||| |
Sbjct: 642 ccctcatcataacagctcctgacaccaattgggttaacattgccccagtatgcctcggtt 583
Query: 233 tgtggatgctcaagtggatcaccataaacttcacttgtgctagtcaacaaaaaccttgca 292
|| ||||||||||| |||||||||||||||||| ||| |||||||||| ||| ||
Sbjct: 582 tgaggatgctcaagcggatcaccataaacttcagaggtggatgtcaacaaaatcctagct 523
Query: 293 ccaactcgctttgccagacccaacatattcaaagttcccatgacatttgtcttgatcgtc 352
||||||| |||||| || |||| ||| || | || || |||||||| |||||||| |||
Sbjct: 522 ccaactctctttgcaagtcccagcatgttgagggtaccaatgacattggtcttgatggtc 463
Query: 353 tt 354
||
Sbjct: 462 tt 461
>gb|CF427742.1|CF427742 PH1_10_E03.g1_A002 Phosphorous-deficient seedlings Sorghum bicolor
cDNA clone PH1_10_E03_A002 5', mRNA sequence
Length = 756
Score = 99.6 bits (50), Expect = 5e-019
Identities = 149/182 (81%)
Strand = Plus / Minus
Query: 173 ccctcatcataacagctcctaacaccaataggattaacgtgcccccagtatgactccttc 232
|||||||||||||||||||| |||||||| || ||||| | |||||||||| ||| |
Sbjct: 645 ccctcatcataacagctcctgacaccaattgggttaacattgccccagtatgcctcggtt 586
Query: 233 tgtggatgctcaagtggatcaccataaacttcacttgtgctagtcaacaaaaaccttgca 292
|| ||||||||||| |||||||||||||||||| ||| |||||||||| ||| ||
Sbjct: 585 tgaggatgctcaagcggatcaccataaacttcagaggtggatgtcaacaaaatcctagct 526
Query: 293 ccaactcgctttgccagacccaacatattcaaagttcccatgacatttgtcttgatcgtc 352
||||||| |||||| || |||| ||| || | || || |||||||| |||||||| |||
Sbjct: 525 ccaactctctttgcaagtcccagcatgttgagggtaccaatgacattggtcttgatggtc 466
Query: 353 tt 354
||
Sbjct: 465 tt 464
>gb|CF430354.1|CF430354 PH1_27_G09.g1_A002 Phosphorous-deficient seedlings Sorghum bicolor
cDNA clone PH1_27_G09_A002 5', mRNA sequence
Length = 794
Score = 99.6 bits (50), Expect = 5e-019
Identities = 149/182 (81%)
Strand = Plus / Minus
Query: 173 ccctcatcataacagctcctaacaccaataggattaacgtgcccccagtatgactccttc 232
|||||||||||||||||||| |||||||| || ||||| | |||||||||| ||| |
Sbjct: 658 ccctcatcataacagctcctgacaccaattgggttaacattgccccagtatgcctcggtt 599
Query: 233 tgtggatgctcaagtggatcaccataaacttcacttgtgctagtcaacaaaaaccttgca 292
|| ||||||||||| |||||||||||||||||| ||| |||||||||| ||| ||
Sbjct: 598 tgaggatgctcaagcggatcaccataaacttcagaggtggatgtcaacaaaatcctagct 539
Query: 293 ccaactcgctttgccagacccaacatattcaaagttcccatgacatttgtcttgatcgtc 352
||||||| |||||| || |||| ||| || | || || |||||||| |||||||| |||
Sbjct: 538 ccaactctctttgcaagtcccagcatgttgagggtaccaatgacattggtcttgatggtc 479
Query: 353 tt 354
||
Sbjct: 478 tt 477
>gb|CF430487.1|CF430487 PH1_28_A03.g1_A002 Phosphorous-deficient seedlings Sorghum bicolor
cDNA clone PH1_28_A03_A002 5', mRNA sequence
Length = 785
Score = 99.6 bits (50), Expect = 5e-019
Identities = 149/182 (81%)
Strand = Plus / Minus
Query: 173 ccctcatcataacagctcctaacaccaataggattaacgtgcccccagtatgactccttc 232
|||||||||||||||||||| |||||||| || ||||| | |||||||||| ||| |
Sbjct: 649 ccctcatcataacagctcctgacaccaattgggttaacattgccccagtatgcctcggtt 590
Query: 233 tgtggatgctcaagtggatcaccataaacttcacttgtgctagtcaacaaaaaccttgca 292
|| ||||||||||| |||||||||||||||||| ||| |||||||||| ||| ||
Sbjct: 589 tgaggatgctcaagcggatcaccataaacttcagaggtggatgtcaacaaaatcctagct 530
Query: 293 ccaactcgctttgccagacccaacatattcaaagttcccatgacatttgtcttgatcgtc 352
||||||| |||||| || |||| ||| || | || || |||||||| |||||||| |||
Sbjct: 529 ccaactctctttgcaagtcccagcatgttgagggtaccaatgacattggtcttgatggtc 470
Query: 353 tt 354
||
Sbjct: 469 tt 468
>gb|CF432706.1|CF432706 NIT1_18_B01.g1_A002 Nitrogen-deficient seedlings Sorghum bicolor
cDNA clone NIT1_18_B01_A002 5', mRNA sequence
Length = 554
Score = 99.6 bits (50), Expect = 5e-019
Identities = 149/182 (81%)
Strand = Plus / Minus
Query: 173 ccctcatcataacagctcctaacaccaataggattaacgtgcccccagtatgactccttc 232
|||||||||||||||||||| |||||||| || ||||| | |||||||||| ||| |
Sbjct: 545 ccctcatcataacagctcctgacaccaattgggttaacattgccccagtatgcctcggtt 486
Query: 233 tgtggatgctcaagtggatcaccataaacttcacttgtgctagtcaacaaaaaccttgca 292
|| ||||||||||| |||||||||||||||||| ||| |||||||||| ||| ||
Sbjct: 485 tgaggatgctcaagcggatcaccataaacttcagaggtggatgtcaacaaaatcctagct 426
Query: 293 ccaactcgctttgccagacccaacatattcaaagttcccatgacatttgtcttgatcgtc 352
||||||| |||||| || |||| ||| || | || || |||||||| |||||||| |||
Sbjct: 425 ccaactctctttgcaagtcccagcatgttgagggtaccaatgacattggtcttgatggtc 366
Query: 353 tt 354
||
Sbjct: 365 tt 364
>gb|CF433668.1|CF433668 NIT1_28_C11.g1_A002 Nitrogen-deficient seedlings Sorghum bicolor
cDNA clone NIT1_28_C11_A002 5', mRNA sequence
Length = 774
Score = 99.6 bits (50), Expect = 5e-019
Identities = 149/182 (81%)
Strand = Plus / Minus
Query: 173 ccctcatcataacagctcctaacaccaataggattaacgtgcccccagtatgactccttc 232
|||||||||||||||||||| |||||||| || ||||| | |||||||||| ||| |
Sbjct: 635 ccctcatcataacagctcctgacaccaattgggttaacattgccccagtatgcctcggtt 576
Query: 233 tgtggatgctcaagtggatcaccataaacttcacttgtgctagtcaacaaaaaccttgca 292
|| ||||||||||| |||||||||||||||||| ||| |||||||||| ||| ||
Sbjct: 575 tgaggatgctcaagcggatcaccataaacttcagaggtggatgtcaacaaaatcctagct 516
Query: 293 ccaactcgctttgccagacccaacatattcaaagttcccatgacatttgtcttgatcgtc 352
||||||| |||||| || |||| ||| || | || || |||||||| |||||||| |||
Sbjct: 515 ccaactctctttgcaagtcccagcatgttgagggtaccaatgacattggtcttgatggtc 456
Query: 353 tt 354
||
Sbjct: 455 tt 454
>gb|CF433901.1|CF433901 NIT1_30_D07.g1_A002 Nitrogen-deficient seedlings Sorghum bicolor
cDNA clone NIT1_30_D07_A002 5', mRNA sequence
Length = 655
Score = 99.6 bits (50), Expect = 5e-019
Identities = 149/182 (81%)
Strand = Plus / Minus
Query: 173 ccctcatcataacagctcctaacaccaataggattaacgtgcccccagtatgactccttc 232
|||||||||||||||||||| |||||||| || ||||| | |||||||||| ||| |
Sbjct: 590 ccctcatcataacagctcctgacaccaattgggttaacattgccccagtatgcctcggtt 531
Query: 233 tgtggatgctcaagtggatcaccataaacttcacttgtgctagtcaacaaaaaccttgca 292
|| ||||||||||| |||||||||||||||||| ||| |||||||||| ||| ||
Sbjct: 530 tgaggatgctcaagcggatcaccataaacttcagaggtggatgtcaacaaaatcctagct 471
Query: 293 ccaactcgctttgccagacccaacatattcaaagttcccatgacatttgtcttgatcgtc 352
||||||| |||||| || |||| ||| || | || || |||||||| |||||||| |||
Sbjct: 470 ccaactctctttgcaagtcccagcatgttgagggtaccaatgacattggtcttgatggtc 411
Query: 353 tt 354
||
Sbjct: 410 tt 409
>gb|CF434004.1|CF434004 NIT1_31_D06.g1_A002 Nitrogen-deficient seedlings Sorghum bicolor
cDNA clone NIT1_31_D06_A002 5', mRNA sequence
Length = 757
Score = 99.6 bits (50), Expect = 5e-019
Identities = 149/182 (81%)
Strand = Plus / Minus
Query: 173 ccctcatcataacagctcctaacaccaataggattaacgtgcccccagtatgactccttc 232
|||||||||||||||||||| |||||||| || ||||| | |||||||||| ||| |
Sbjct: 650 ccctcatcataacagctcctgacaccaattgggttaacattgccccagtatgcctcggtt 591
Query: 233 tgtggatgctcaagtggatcaccataaacttcacttgtgctagtcaacaaaaaccttgca 292
|| ||||||||||| |||||||||||||||||| ||| |||||||||| ||| ||
Sbjct: 590 tgaggatgctcaagcggatcaccataaacttcagaggtggatgtcaacaaaatcctagct 531
Query: 293 ccaactcgctttgccagacccaacatattcaaagttcccatgacatttgtcttgatcgtc 352
||||||| |||||| || |||| ||| || | || || |||||||| |||||||| |||
Sbjct: 530 ccaactctctttgcaagtcccagcatgttgagggtaccaatgacattggtcttgatggtc 471
Query: 353 tt 354
||
Sbjct: 470 tt 469
>gb|CN125876.1|CN125876 RHOH1_13_H02.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_13_H02_A002 5', mRNA sequence
Length = 798
Score = 99.6 bits (50), Expect = 5e-019
Identities = 149/182 (81%)
Strand = Plus / Minus
Query: 173 ccctcatcataacagctcctaacaccaataggattaacgtgcccccagtatgactccttc 232
|||||||||||||||||||| |||||||| || ||||| | |||||||||| ||| |
Sbjct: 615 ccctcatcataacagctcctgacaccaattgggttaacattgccccagtatgcctcggtt 556
Query: 233 tgtggatgctcaagtggatcaccataaacttcacttgtgctagtcaacaaaaaccttgca 292
|| ||||||||||| |||||||||||||||||| ||| |||||||||| ||| ||
Sbjct: 555 tgaggatgctcaagcggatcaccataaacttcagaggtggatgtcaacaaaatcctagct 496
Query: 293 ccaactcgctttgccagacccaacatattcaaagttcccatgacatttgtcttgatcgtc 352
||||||| |||||| || |||| ||| || | || || |||||||| |||||||| |||
Sbjct: 495 ccaactctctttgcaagtcccagcatgttgagggtaccaatgacattggtcttgatggtc 436
Query: 353 tt 354
||
Sbjct: 435 tt 434
>gb|CN128624.1|CN128624 RHOH1_30_D09.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_30_D09_A002 5', mRNA sequence
Length = 883
Score = 99.6 bits (50), Expect = 5e-019
Identities = 149/182 (81%)
Strand = Plus / Minus
Query: 173 ccctcatcataacagctcctaacaccaataggattaacgtgcccccagtatgactccttc 232
|||||||||||||||||||| |||||||| || ||||| | |||||||||| ||| |
Sbjct: 626 ccctcatcataacagctcctgacaccaattgggttaacattgccccagtatgcctcggtt 567
Query: 233 tgtggatgctcaagtggatcaccataaacttcacttgtgctagtcaacaaaaaccttgca 292
|| ||||||||||| |||||||||||||||||| ||| |||||||||| ||| ||
Sbjct: 566 tgaggatgctcaagcggatcaccataaacttcagaggtgggtgtcaacaaaatcctagct 507
Query: 293 ccaactcgctttgccagacccaacatattcaaagttcccatgacatttgtcttgatcgtc 352
||||||| |||||| || |||| ||| || | || || |||||||| |||||||| |||
Sbjct: 506 ccaactctctttgcaagtcccagcatgttgagggtaccaatgacattggtcttgatggtc 447
Query: 353 tt 354
||
Sbjct: 446 tt 445
>gb|CN141132.1|CN141132 OX1_49_B06.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_49_B06_A002 5', mRNA sequence
Length = 767
Score = 99.6 bits (50), Expect = 5e-019
Identities = 149/182 (81%)
Strand = Plus / Minus
Query: 173 ccctcatcataacagctcctaacaccaataggattaacgtgcccccagtatgactccttc 232
|||||||||||||||||||| |||||||| || ||||| | |||||||||| ||| |
Sbjct: 626 ccctcatcataacagctcctgacaccaattgggttaacattgccccagtatgcctcggtt 567
Query: 233 tgtggatgctcaagtggatcaccataaacttcacttgtgctagtcaacaaaaaccttgca 292
|| ||||||||||| |||||||||||||||||| ||| |||||||||| ||| ||
Sbjct: 566 tgaggatgctcaagcggatcaccataaacttcagaggtggatgtcaacaaaatcctagct 507
Query: 293 ccaactcgctttgccagacccaacatattcaaagttcccatgacatttgtcttgatcgtc 352
||||||| |||||| || |||| ||| || | || || |||||||| |||||||| |||
Sbjct: 506 ccaactctctttgcaagtcccagcatgttgagggtaccaatgacattggtcttgatggtc 447
Query: 353 tt 354
||
Sbjct: 446 tt 445
>gb|CX611949.1|CX611949 ANR1_27_D08.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_27_D08_A002 5', mRNA sequence
Length = 792
Score = 99.6 bits (50), Expect = 5e-019
Identities = 149/182 (81%)
Strand = Plus / Minus
Query: 173 ccctcatcataacagctcctaacaccaataggattaacgtgcccccagtatgactccttc 232
|||||||||||||||||||| |||||||| || ||||| | |||||||||| ||| |
Sbjct: 625 ccctcatcataacagctcctgacaccaattgggttaacattgccccagtatgcctcggtt 566
Query: 233 tgtggatgctcaagtggatcaccataaacttcacttgtgctagtcaacaaaaaccttgca 292
|| ||||||||||| |||||||||||||||||| ||| |||||||||| ||| ||
Sbjct: 565 tgaggatgctcaagcggatcaccataaacttcagaggtggatgtcaacaaaatcctagct 506
Query: 293 ccaactcgctttgccagacccaacatattcaaagttcccatgacatttgtcttgatcgtc 352
||||||| |||||| || |||| ||| || | || || |||||||| |||||||| |||
Sbjct: 505 ccaactctctttgcaagtcccagcatgttgagggtaccaatgacattggtcttgatggtc 446
Query: 353 tt 354
||
Sbjct: 445 tt 444
>gb|CX615535.1|CX615535 GABR1_20_E09.g1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_20_E09_A002 5', mRNA sequence
Length = 805
Score = 99.6 bits (50), Expect = 5e-019
Identities = 149/182 (81%)
Strand = Plus / Minus
Query: 173 ccctcatcataacagctcctaacaccaataggattaacgtgcccccagtatgactccttc 232
|||||||||||||||||||| |||||||| || ||||| | |||||||||| ||| |
Sbjct: 625 ccctcatcataacagctcctgacaccaattgggttaacattgccccagtatgcctcggtt 566
Query: 233 tgtggatgctcaagtggatcaccataaacttcacttgtgctagtcaacaaaaaccttgca 292
|| ||||||||||| |||||||||||||||||| ||| |||||||||| ||| ||
Sbjct: 565 tgaggatgctcaagcggatcaccataaacttcagaggtggatgtcaacaaaatcctagct 506
Query: 293 ccaactcgctttgccagacccaacatattcaaagttcccatgacatttgtcttgatcgtc 352
||||||| |||||| || |||| ||| || | || || |||||||| |||||||| |||
Sbjct: 505 ccaactctctttgcaagtcccagcatgttgagggtaccaatgacattggtcttgatggtc 446
Query: 353 tt 354
||
Sbjct: 445 tt 444
>gb|CX618964.1|CX618964 GABR1_42_E12.g1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_42_E12_A002 5', mRNA sequence
Length = 626
Score = 99.6 bits (50), Expect = 5e-019
Identities = 149/182 (81%)
Strand = Plus / Minus
Query: 173 ccctcatcataacagctcctaacaccaataggattaacgtgcccccagtatgactccttc 232
|||||||||||||||||||| |||||||| || ||||| | |||||||||| ||| |
Sbjct: 616 ccctcatcataacagctcctgacaccaattgggttaacattgccccagtatgcctcggtt 557
Query: 233 tgtggatgctcaagtggatcaccataaacttcacttgtgctagtcaacaaaaaccttgca 292
|| ||||||||||| |||||||||||||||||| ||| |||||||||| ||| ||
Sbjct: 556 tgaggatgctcaagcggatcaccataaacttcagaggtggatgtcaacaaaatcctagct 497
Query: 293 ccaactcgctttgccagacccaacatattcaaagttcccatgacatttgtcttgatcgtc 352
||||||| |||||| || |||| ||| || | || || |||||||| |||||||| |||
Sbjct: 496 ccaactctctttgcaagtcccagcatgttgagggtaccaatgacattggtcttgatggtc 437
Query: 353 tt 354
||
Sbjct: 436 tt 435
>gb|CX622038.1|CX622038 GABR1_61_D10.g2_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_61_D10_A002 5', mRNA sequence
Length = 786
Score = 99.6 bits (50), Expect = 5e-019
Identities = 149/182 (81%)
Strand = Plus / Minus
Query: 173 ccctcatcataacagctcctaacaccaataggattaacgtgcccccagtatgactccttc 232
|||||||||||||||||||| |||||||| || ||||| | |||||||||| ||| |
Sbjct: 625 ccctcatcataacagctcctgacaccaattgggttaacattgccccagtatgcctcggtt 566
Query: 233 tgtggatgctcaagtggatcaccataaacttcacttgtgctagtcaacaaaaaccttgca 292
|| ||||||||||| |||||||||||||||||| ||| |||||||||| ||| ||
Sbjct: 565 tgaggatgctcaagcggatcaccataaacttcagaggtggatgtcaacaaaatcctagct 506
Query: 293 ccaactcgctttgccagacccaacatattcaaagttcccatgacatttgtcttgatcgtc 352
||||||| |||||| || |||| ||| || | || || |||||||| |||||||| |||
Sbjct: 505 ccaactctctttgcaagtcccagcatgttgagggtaccaatgacattggtcttgatggtc 446
Query: 353 tt 354
||
Sbjct: 445 tt 444
>gb|CX615385.1|CX615385 GABR1_19_G09.g1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_19_G09_A002 5', mRNA sequence
Length = 699
Score = 97.6 bits (49), Expect = 2e-018
Identities = 148/181 (81%)
Strand = Plus / Minus
Query: 173 ccctcatcataacagctcctaacaccaataggattaacgtgcccccagtatgactccttc 232
|||||||||||||||||||| |||||||| || ||||| | |||||||||| ||| |
Sbjct: 639 ccctcatcataacagctcctgacaccaattgggttaacattgccccagtatgcctcggtt 580
Query: 233 tgtggatgctcaagtggatcaccataaacttcacttgtgctagtcaacaaaaaccttgca 292
|| ||||||||||| |||||||||||||||||| ||| |||||||||| ||| ||
Sbjct: 579 tgaggatgctcaagcggatcaccataaacttcagaggtggatgtcaacaaaatcctagct 520
Query: 293 ccaactcgctttgccagacccaacatattcaaagttcccatgacatttgtcttgatcgtc 352
||||||| |||||| || |||| ||| || | || || |||||||| |||||||| |||
Sbjct: 519 ccaactctctttgcaagtcccagcatgttgagggtaccaatgacattggtcttgatggtc 460
Query: 353 t 353
|
Sbjct: 459 t 459
>gb|CW404394.1|CW404394 fsbb001f096i08f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f096i08, DNA
sequence
Length = 546
Score = 95.6 bits (48), Expect = 7e-018
Identities = 123/148 (83%)
Strand = Plus / Plus
Query: 444 cgtggcggagcagctcgaaccgggggttccggaggtggtgcgcgacgttctccttcctgc 503
||||||||| || |||||||| ||||||| |||| |||||||| ||||| |||| | |
Sbjct: 1 cgtggcggatcacctcgaacctggggttctggagatggtgcgccacgttgcccttgcgcc 60
Query: 504 cggtgaagaagttgtcgaccacgatcacgctgtccccctgctctaggagccggtcgacga 563
| |||||||||||||| ||||||||||||||||| || |||| | |||||||| || |
Sbjct: 61 ccgtgaagaagttgtccaccacgatcacgctgtcgccgcgctccaccagccggtccacca 120
Query: 564 ggtggctgccgacgaaccctgccccgcc 591
||||||| || |||||||| || |||||
Sbjct: 121 ggtggctccccacgaacccagcgccgcc 148
>gb|CD212312.1|CD212312 HS1_30_E07.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_30_E07_A012 5', mRNA sequence
Length = 535
Score = 93.7 bits (47), Expect = 3e-017
Identities = 164/203 (80%)
Strand = Plus / Minus
Query: 389 gggcatgcgaggtggtagatccggtcgacataaaagaggattggttcgactacatcgtgg 448
||||| || |||||||||||| ||||||| | | || || || ||||| || ||||||
Sbjct: 535 gggcaggcaaggtggtagatctggtcgacctcgagcagtatgggctcgacgacgtcgtgg 476
Query: 449 cggagcagctcgaaccgggggttccggaggtggtgcgcgacgttctccttcctgccggtg 508
|||| || |||||||| ||||||| |||| |||||||| ||||| |||| | || |||
Sbjct: 475 cggatcacctcgaacctggggttctggagatggtgcgccacgttgcccttgcgccccgtg 416
Query: 509 aagaagttgtcgaccacgatcacgctgtccccctgctctaggagccggtcgacgaggtgg 568
||||||||||| ||||||||||||||||| || |||| | || ||||| || ||||||
Sbjct: 415 aagaagttgtccaccacgatcacgctgtcgccgcgctccaccaggcggtccaccaggtgg 356
Query: 569 ctgccgacgaaccctgccccgcc 591
|| || |||||||| || |||||
Sbjct: 355 ctccccacgaacccagcgccgcc 333
>gb|CD225279.1|CD225279 CCC1_39_H04.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_39_H04_A007 5', mRNA sequence
Length = 687
Score = 93.7 bits (47), Expect = 3e-017
Identities = 164/203 (80%)
Strand = Plus / Minus
Query: 389 gggcatgcgaggtggtagatccggtcgacataaaagaggattggttcgactacatcgtgg 448
||||| || |||||||||||| ||||||| | | || || || ||||| || ||||||
Sbjct: 653 gggcaggcaaggtggtagatctggtcgacctcgagcagtatgggctcgacgacgtcgtgg 594
Query: 449 cggagcagctcgaaccgggggttccggaggtggtgcgcgacgttctccttcctgccggtg 508
|||| || |||||||| ||||||| |||| |||||||| ||||| |||| | || |||
Sbjct: 593 cggatcacctcgaacctggggttctggagatggtgcgccacgttgcccttgcgccccgtg 534
Query: 509 aagaagttgtcgaccacgatcacgctgtccccctgctctaggagccggtcgacgaggtgg 568
||||||||||| ||||||||||||||||| || |||| | || ||||| || ||||||
Sbjct: 533 aagaagttgtccaccacgatcacgctgtcgccgcgctccaccaggcggtccaccaggtgg 474
Query: 569 ctgccgacgaaccctgccccgcc 591
|| || |||||||| || |||||
Sbjct: 473 ctccccacgaacccagcgccgcc 451
>gb|BG322453.1|BG322453 EM1_28_B08.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 588
Score = 91.7 bits (46), Expect = 1e-016
Identities = 112/134 (83%)
Strand = Plus / Minus
Query: 173 ccctcatcataacagctcctaacaccaataggattaacgtgcccccagtatgactccttc 232
|||||||||||||||||||| |||||||| || ||||| | |||||||||| ||| |
Sbjct: 161 ccctcatcataacagctcctgacaccaattgggttaacattgccccagtatgcctcggtt 102
Query: 233 tgtggatgctcaagtggatcaccataaacttcacttgtgctagtcaacaaaaaccttgca 292
|| ||||||||||| |||||||||||||||||| ||| |||||||||| ||| ||
Sbjct: 101 tgaggatgctcaagcggatcaccataaacttcagaggtggatgtcaacaaaatcctagct 42
Query: 293 ccaactcgctttgc 306
||||||| ||||||
Sbjct: 41 ccaactctctttgc 28
>gb|CF430476.1|CF430476 PH1_28_D01.g1_A002 Phosphorous-deficient seedlings Sorghum bicolor
cDNA clone PH1_28_D01_A002 5', mRNA sequence
Length = 751
Score = 91.7 bits (46), Expect = 1e-016
Identities = 148/182 (81%)
Strand = Plus / Minus
Query: 173 ccctcatcataacagctcctaacaccaataggattaacgtgcccccagtatgactccttc 232
||||||||||| |||||||| |||||||| || ||||| | |||||||||| ||| |
Sbjct: 616 ccctcatcatagcagctcctgacaccaattgggttaacattgccccagtatgcctcggtt 557
Query: 233 tgtggatgctcaagtggatcaccataaacttcacttgtgctagtcaacaaaaaccttgca 292
|| ||||||||||| |||||||||||||||||| ||| |||||||||| ||| ||
Sbjct: 556 tgaggatgctcaagcggatcaccataaacttcagaggtggatgtcaacaaaatcctagct 497
Query: 293 ccaactcgctttgccagacccaacatattcaaagttcccatgacatttgtcttgatcgtc 352
||||||| |||||| || |||| ||| || | || || |||||||| |||||||| |||
Sbjct: 496 ccaactctctttgcaagtcccagcatgttgagggtaccaatgacattggtcttgatggtc 437
Query: 353 tt 354
||
Sbjct: 436 tt 435
>gb|CX606371.1|CX606371 ANR1_2_D11.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_2_D11_A002 5', mRNA sequence
Length = 806
Score = 91.7 bits (46), Expect = 1e-016
Identities = 148/182 (81%)
Strand = Plus / Minus
Query: 173 ccctcatcataacagctcctaacaccaataggattaacgtgcccccagtatgactccttc 232
|||||||||||||||||||| |||||||| || ||||| | ||||| |||| ||| |
Sbjct: 625 ccctcatcataacagctcctgacaccaattgggttaacattgccccaatatgcctcggtt 566
Query: 233 tgtggatgctcaagtggatcaccataaacttcacttgtgctagtcaacaaaaaccttgca 292
|| ||||||||||| |||||||||||||||||| ||| |||||||||| ||| ||
Sbjct: 565 tgaggatgctcaagcggatcaccataaacttcagaggtggatgtcaacaaaatcctagct 506
Query: 293 ccaactcgctttgccagacccaacatattcaaagttcccatgacatttgtcttgatcgtc 352
||||||| |||||| || |||| ||| || | || || |||||||| |||||||| |||
Sbjct: 505 ccaactctctttgcaagtcccagcatgttgagggtaccaatgacattggtcttgatggtc 446
Query: 353 tt 354
||
Sbjct: 445 tt 444
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 297,709
Number of Sequences: 832831
Number of extensions: 297709
Number of successful extensions: 85335
Number of sequences better than 0.5: 105
Number of HSP's better than 0.5 without gapping: 99
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 85114
Number of HSP's gapped (non-prelim): 222
length of query: 950
length of database: 491,359,669
effective HSP length: 20
effective length of query: 930
effective length of database: 474,703,049
effective search space: 441473835570
effective search space used: 441473835570
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)