BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3866402.2.1
(406 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW225022.1|CW225022 104_662_11204129_116_37199_071 Sorgh... 377 e-103
gb|BZ334804.1|BZ334804 hx93f03.b1 WGS-SbicolorF (JM107 adap... 337 5e-091
gb|CW225023.1|CW225023 104_662_11204129_148_37200_071 Sorgh... 46 0.002
gb|CL175625.1|CL175625 104_381_10892573_148_31764_173 Sorgh... 40 0.15
gb|CW047497.1|CW047497 104_285_10512756_115_30217 Sorghum m... 40 0.15
gb|CW148277.1|CW148277 104_542_11140330_148_35005_033 Sorgh... 40 0.15
gb|CW168326.1|CW168326 104_577_11154083_148_36496_034 Sorgh... 40 0.15
gb|CW190177.1|CW190177 104_611_11174363_148_36746_036 Sorgh... 40 0.15
gb|CW311756.1|CW311756 104_801_11470397_116_36281_025 Sorgh... 40 0.15
gb|BM328497.1|BM328497 PIC1_29_H10.g1_A002 Pathogen-infecte... 40 0.15
gb|BM329477.1|BM329477 PIC1_38_E07.g1_A002 Pathogen-infecte... 40 0.15
gb|CD425420.1|CD425420 SA1_12_E03.b1_A002 Salicylic acid-tr... 40 0.15
gb|CF073421.1|CF073421 FE1_10_A03.b1_A002 Iron-deficient se... 40 0.15
gb|CN137452.1|CN137452 OX1_57_H05.b1_A002 Oxidatively-stres... 40 0.15
>gb|CW225022.1|CW225022 104_662_11204129_116_37199_071 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11204129, DNA
sequence
Length = 682
Score = 377 bits (190), Expect = e-103
Identities = 278/307 (90%), Gaps = 3/307 (0%)
Strand = Plus / Plus
Query: 80 acccatgtacaacaatcatcctggagctaatcccttgcctaacccgtgtgtacgaatgtt 139
||||||||||||||||| ||||||||||||||||| |||||| ||| ||||||||||
Sbjct: 258 acccatgtacaacaatc---ctggagctaatcccttgtctaacctgtgattacgaatgtt 314
Query: 140 tcctgaattaacattatctttgcttcttgccgccagccaagatccgagagatttgaaggc 199
||||| | |||||| | ||||| ||||||||||||||||||||||||||||||||||| |
Sbjct: 315 tcctgtactaacatcaactttgtttcttgccgccagccaagatccgagagatttgaagcc 374
Query: 200 ctcggctaaatgcctgattaaaaagcaatctcgcctggaactccgagacaaatgggaacc 259
|||||||||||||||||||||| |||||||||| ||||||||| |||||||| |||||||
Sbjct: 375 ctcggctaaatgcctgattaaagagcaatctcgtctggaactcggagacaaacgggaacc 434
Query: 260 atgccagcacagccaccggnacgaagatgacaatccccatcaggtactcataccccctag 319
|||||||||| ||||| || ||||||||||| |||||||||||||| || |||||||| |
Sbjct: 435 atgccagcaccgccactgggacgaagatgacgatccccatcaggtattcgtaccccctcg 494
Query: 320 agagggccttcacggatccccagagcccaaacgccttgatgaccggtttacttgcttgag 379
||||||||||||| |||||||| |||||| | |||||||| |||||||||||||||||||
Sbjct: 495 agagggccttcacagatccccacagcccacatgccttgatcaccggtttacttgcttgag 554
Query: 380 atatctg 386
|||||||
Sbjct: 555 atatctg 561
Score = 97.6 bits (49), Expect = 8e-019
Identities = 64/69 (92%)
Strand = Plus / Plus
Query: 1 aagaaaaaccagccttgtgtatacagccaagactctgaaagcatcagcagccttacaatt 60
||||||||||||||||||||||||| | | ||||||||||||||||||||||||| |||
Sbjct: 190 aagaaaaaccagccttgtgtatacaacgagaactctgaaagcatcagcagccttactatt 249
Query: 61 cctccaaca 69
|||||||||
Sbjct: 250 cctccaaca 258
>gb|BZ334804.1|BZ334804 hx93f03.b1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone hx93f03 5', DNA sequence
Length = 633
Score = 337 bits (170), Expect = 5e-091
Identities = 235/257 (91%)
Strand = Plus / Plus
Query: 130 tacgaatgtttcctgaattaacattatctttgcttcttgccgccagccaagatccgagag 189
||||||||||||||| | |||||| | ||||| |||||||||||||||||||||||||||
Sbjct: 9 tacgaatgtttcctgtactaacatcaactttgtttcttgccgccagccaagatccgagag 68
Query: 190 atttgaaggcctcggctaaatgcctgattaaaaagcaatctcgcctggaactccgagaca 249
|||||||| ||||||||||||||||||||||| |||||||||| ||||||||| ||||||
Sbjct: 69 atttgaagccctcggctaaatgcctgattaaagagcaatctcgtctggaactcggagaca 128
Query: 250 aatgggaaccatgccagcacagccaccggnacgaagatgacaatccccatcaggtactca 309
|| ||||||||||||||||| ||||| || ||||||||||| |||||||||||||| ||
Sbjct: 129 aacgggaaccatgccagcaccgccactgggacgaagatgacgatccccatcaggtattcg 188
Query: 310 taccccctagagagggccttcacggatccccagagcccaaacgccttgatgaccggttta 369
|||||||| |||||||||||||| |||||||| |||||| | |||||||| |||||||||
Sbjct: 189 taccccctcgagagggccttcacagatccccacagcccacatgccttgatcaccggttta 248
Query: 370 cttgcttgagatatctg 386
|||||||||||||||||
Sbjct: 249 cttgcttgagatatctg 265
Score = 46.1 bits (23), Expect = 0.002
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 384 ctgcagaatggcccatcctgtgg 406
|||||||||||||||||||||||
Sbjct: 475 ctgcagaatggcccatcctgtgg 497
>gb|CW225023.1|CW225023 104_662_11204129_148_37200_071 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11204129, DNA
sequence
Length = 671
Score = 46.1 bits (23), Expect = 0.002
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 384 ctgcagaatggcccatcctgtgg 406
|||||||||||||||||||||||
Sbjct: 575 ctgcagaatggcccatcctgtgg 553
>gb|CL175625.1|CL175625 104_381_10892573_148_31764_173 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10892573, DNA
sequence
Length = 745
Score = 40.1 bits (20), Expect = 0.15
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 234 ctggaactccgagacaaatgggaaccatgcca 265
||||||||| || ||||| |||||||||||||
Sbjct: 488 ctggaactcggacacaaaggggaaccatgcca 457
>gb|CW047497.1|CW047497 104_285_10512756_115_30217 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10512756, DNA
sequence
Length = 421
Score = 40.1 bits (20), Expect = 0.15
Identities = 35/40 (87%)
Strand = Plus / Minus
Query: 187 gagatttgaaggcctcggctaaatgcctgattaaaaagca 226
||||| || ||||| |||||||||||||| ||||| ||||
Sbjct: 190 gagatctggaggccccggctaaatgcctggttaaacagca 151
>gb|CW148277.1|CW148277 104_542_11140330_148_35005_033 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11140330, DNA
sequence
Length = 721
Score = 40.1 bits (20), Expect = 0.15
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 234 ctggaactccgagacaaatgggaaccatgcca 265
||||||||| || ||||| |||||||||||||
Sbjct: 279 ctggaactcggacacaaaggggaaccatgcca 248
>gb|CW168326.1|CW168326 104_577_11154083_148_36496_034 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11154083, DNA
sequence
Length = 690
Score = 40.1 bits (20), Expect = 0.15
Identities = 35/40 (87%)
Strand = Plus / Plus
Query: 187 gagatttgaaggcctcggctaaatgcctgattaaaaagca 226
||||| || ||||| |||||||||||||| ||||| ||||
Sbjct: 301 gagatctggaggccccggctaaatgcctggttaaacagca 340
>gb|CW190177.1|CW190177 104_611_11174363_148_36746_036 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11174363, DNA
sequence
Length = 703
Score = 40.1 bits (20), Expect = 0.15
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 234 ctggaactccgagacaaatgggaaccatgcca 265
||||||||| || ||||| |||||||||||||
Sbjct: 570 ctggaactcggacacaaaggggaaccatgcca 539
>gb|CW311756.1|CW311756 104_801_11470397_116_36281_025 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11470397, DNA
sequence
Length = 730
Score = 40.1 bits (20), Expect = 0.15
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 234 ctggaactccgagacaaatgggaaccatgcca 265
||||||||| || ||||| |||||||||||||
Sbjct: 219 ctggaactcggacacaaaggggaaccatgcca 188
>gb|BM328497.1|BM328497 PIC1_29_H10.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 437
Score = 40.1 bits (20), Expect = 0.15
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 234 ctggaactccgagacaaatgggaaccatgcca 265
||||||||| || ||||| |||||||||||||
Sbjct: 123 ctggaactcggacacaaaggggaaccatgcca 92
>gb|BM329477.1|BM329477 PIC1_38_E07.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 511
Score = 40.1 bits (20), Expect = 0.15
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 234 ctggaactccgagacaaatgggaaccatgcca 265
||||||||| || ||||| |||||||||||||
Sbjct: 192 ctggaactcggacacaaaggggaaccatgcca 161
>gb|CD425420.1|CD425420 SA1_12_E03.b1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_12_E03_A002 3', mRNA sequence
Length = 555
Score = 40.1 bits (20), Expect = 0.15
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 234 ctggaactccgagacaaatgggaaccatgcca 265
||||||||| || ||||| |||||||||||||
Sbjct: 266 ctggaactcggacacaaaggggaaccatgcca 235
>gb|CF073421.1|CF073421 FE1_10_A03.b1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
clone FE1_10_A03_A002 3', mRNA sequence
Length = 417
Score = 40.1 bits (20), Expect = 0.15
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 234 ctggaactccgagacaaatgggaaccatgcca 265
||||||||| || ||||| |||||||||||||
Sbjct: 127 ctggaactcggacacaaaggggaaccatgcca 96
>gb|CN137452.1|CN137452 OX1_57_H05.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_57_H05_A002 3', mRNA sequence
Length = 732
Score = 40.1 bits (20), Expect = 0.15
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 234 ctggaactccgagacaaatgggaaccatgcca 265
||||||||| || ||||| |||||||||||||
Sbjct: 526 ctggaactcggacacaaaggggaaccatgcca 495
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 87,156
Number of Sequences: 832831
Number of extensions: 87156
Number of successful extensions: 21970
Number of sequences better than 0.5: 14
Number of HSP's better than 0.5 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 21947
Number of HSP's gapped (non-prelim): 22
length of query: 406
length of database: 491,359,669
effective HSP length: 19
effective length of query: 387
effective length of database: 475,535,880
effective search space: 184032385560
effective search space used: 184032385560
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)