BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3866391.2.1
(613 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW120674.1|CW120674 104_498_11109465_116_34649_043 Sorgh... 262 3e-068
gb|CL160836.1|CL160836 104_351_10805278_116_31825_334 Sorgh... 246 2e-063
gb|CW397543.1|CW397543 fsbb001f086i23f0 Sorghum methylation... 202 3e-050
gb|CW454185.1|CW454185 fsbb001f198i07f0 Sorghum methylation... 202 3e-050
gb|CW258305.1|CW258305 104_724_11227804_116_35165_014 Sorgh... 168 4e-040
gb|CW433110.1|CW433110 fsbb001f148d02f0 Sorghum methylation... 165 6e-039
gb|CW465043.1|CW465043 fsbb001f215j19f0 Sorghum methylation... 165 6e-039
gb|CL160835.1|CL160835 104_351_10805278_114_31824_334 Sorgh... 153 2e-035
gb|BI074435.1|BI074435 IP1_15_E01.g1_A002 Immature pannicle... 115 5e-024
gb|CW340323.1|CW340323 104_841_11485740_116_36149_042 Sorgh... 103 2e-020
gb|CW340324.1|CW340324 104_841_11485740_148_36148_042 Sorgh... 103 2e-020
gb|CW148547.1|CW148547 104_547_11142013_148_35008_059 Sorgh... 101 7e-020
gb|BZ341019.1|BZ341019 ic42e12.g1 WGS-SbicolorF (JM107 adap... 92 7e-017
gb|CW120675.1|CW120675 104_498_11109465_148_34653_043 Sorgh... 86 4e-015
gb|CW139649.1|CW139649 104_529_11135355_116_34906_002 Sorgh... 86 4e-015
gb|CW164798.1|CW164798 104_572_11152171_148_36466_066 Sorgh... 86 4e-015
gb|CW302662.1|CW302662 104_786_11464835_148_35668_034 Sorgh... 86 4e-015
gb|CW480612.1|CW480612 fsbb001f239m07k0 Sorghum methylation... 84 2e-014
gb|CW465044.1|CW465044 fsbb001f215j19k0 Sorghum methylation... 82 7e-014
gb|BM329546.1|BM329546 PIC1_39_E06.g1_A002 Pathogen-infecte... 66 4e-009
gb|BM318110.1|BM318110 PI1_78_F04.g9_A002 Pathogen induced ... 60 3e-007
gb|CL179028.1|CL179028 104_387_10895001_148_31905_297 Sorgh... 54 2e-005
gb|CW114222.1|CW114222 104_488_11105877_116_34557_081 Sorgh... 54 2e-005
gb|CW114223.1|CW114223 104_488_11105877_148_34561_081 Sorgh... 54 2e-005
gb|CW241801.1|CW241801 104_701_11218975_148_37556_030 Sorgh... 54 2e-005
gb|CW457787.1|CW457787 fsbb001f203m03f0 Sorghum methylation... 54 2e-005
gb|BE596360.1|BE596360 PI1_49_H08.b1_A002 Pathogen induced ... 54 2e-005
gb|CW148546.1|CW148546 104_547_11142013_116_35012_059 Sorgh... 50 2e-004
gb|CW300237.1|CW300237 104_783_11463546_116_36252_071 Sorgh... 48 0.001
gb|CW302661.1|CW302661 104_786_11464835_116_35664_034 Sorgh... 48 0.001
gb|CW053460.1|CW053460 104_293_10515976_114_30185 Sorghum m... 46 0.004
gb|CW182673.1|CW182673 104_598_11164205_148_36668_027 Sorgh... 46 0.004
gb|CD211688.1|CD211688 HS1_63_A09.g1_A012 Heat-shocked seed... 46 0.004
gb|CX610722.1|CX610722 ANR1_20_A07.g1_A002 Anaerobic roots ... 46 0.004
gb|CW030659.1|CW030659 104_258_10500355_114_30403 Sorghum m... 44 0.015
gb|CW119823.1|CW119823 104_497_11108979_116_34640_016 Sorgh... 44 0.015
gb|CW128537.1|CW128537 104_510_11114060_116_34759_078 Sorgh... 44 0.015
gb|CW294837.1|CW294837 104_775_11415396_116_36233_034 Sorgh... 44 0.015
gb|CW294838.1|CW294838 104_775_11415396_148_36234_034 Sorgh... 44 0.015
gb|AW565784.1|AW565784 LG1_349_C06.g1_A002 Light Grown 1 (L... 44 0.015
gb|BE366751.1|BE366751 PI1_3_F06.g1_A002 Pathogen induced 1... 44 0.015
gb|BG051890.1|BG051890 RHIZ2_6_B07.g1_A003 Rhizome2 (RHIZ2)... 44 0.015
gb|BG356554.1|BG356554 EM1_23_H05.g1_A002 Embryo 1 (EM1) So... 44 0.015
gb|BG410749.1|BG410749 EM1_25_F07.g1_A002 Embryo 1 (EM1) So... 44 0.015
gb|BG463329.1|BG463329 EM1_48_B12.g1_A002 Embryo 1 (EM1) So... 44 0.015
gb|BG556992.1|BG556992 EM1_41_C01.g1_A002 Embryo 1 (EM1) So... 44 0.015
gb|BG557149.1|BG557149 EM1_43_B10.g1_A002 Embryo 1 (EM1) So... 44 0.015
gb|BM318020.1|BM318020 PI1_36_E06.g9_A002 Pathogen induced ... 44 0.015
gb|CF427182.1|CF427182 PH1_4_G10.b1_A002 Phosphorous-defici... 44 0.015
gb|CL170464.1|CL170464 104_371_10813835_148_31790_155 Sorgh... 42 0.059
gb|CL171390.1|CL171390 104_373_10889394_148_31776_066 Sorgh... 42 0.059
gb|CL185716.1|CL185716 104_400_10899733_114_32400_063 Sorgh... 42 0.059
gb|CL185717.1|CL185717 104_400_10899733_116_32404_063 Sorgh... 42 0.059
gb|CL195525.1|CL195525 104_421_10942439_114_32308_096 Sorgh... 42 0.059
gb|CW022740.1|CW022740 104_162_10432028_5_30000 Sorghum met... 42 0.059
gb|CW037737.1|CW037737 104_269_10504516_114_30383 Sorghum m... 42 0.059
gb|CW037738.1|CW037738 104_269_10504516_115_30384 Sorghum m... 42 0.059
gb|CW042822.1|CW042822 104_276_10507297_116_30486 Sorghum m... 42 0.059
gb|CW112703.1|CW112703 104_486_11105034_148_34544_069 Sorgh... 42 0.059
gb|CW183762.1|CW183762 104_599_11164786_148_36677_035 Sorgh... 42 0.059
gb|CW235776.1|CW235776 104_691_11215198_116_37494_091 Sorgh... 42 0.059
gb|CW240714.1|CW240714 104_699_11218365_116_37549_087 Sorgh... 42 0.059
gb|CW295813.1|CW295813 104_777_11461150_148_35627_091 Sorgh... 42 0.059
gb|CW345965.1|CW345965 104_849_11488777_116_36217_011 Sorgh... 42 0.059
gb|CW345966.1|CW345966 104_849_11488777_148_36218_011 Sorgh... 42 0.059
gb|BG557014.1|BG557014 EM1_41_E05.g1_A002 Embryo 1 (EM1) So... 42 0.059
gb|CB924943.1|CB924943 ABA1_29_C07.b1_A012 Abscisic acid-tr... 42 0.059
gb|CB924997.1|CB924997 ABA1_29_C08.b1_A012 Abscisic acid-tr... 42 0.059
gb|CB925454.1|CB925454 ABA1_33_E11.b1_A012 Abscisic acid-tr... 42 0.059
gb|CB927184.1|CB927184 ABA1_14_H08.b1_A012 Abscisic acid-tr... 42 0.059
gb|CB927232.1|CB927232 ABA1_14_H09.b1_A012 Abscisic acid-tr... 42 0.059
gb|CB929259.1|CB929259 ABA1_41_D02.b1_A012 Abscisic acid-tr... 42 0.059
gb|CF433772.1|CF433772 NIT1_30_A07.b1_A002 Nitrogen-deficie... 42 0.059
gb|BZ348956.1|BZ348956 hp63d08.g1 WGS-SbicolorF (JM107 adap... 40 0.23
gb|CW022910.1|CW022910 104_162_10432129_5_30000 Sorghum met... 40 0.23
gb|CW042821.1|CW042821 104_276_10507297_114_30475 Sorghum m... 40 0.23
gb|CW048997.1|CW048997 104_288_10513760_114_30200 Sorghum m... 40 0.23
gb|CW101296.1|CW101296 104_469_11004568_148_34411_064 Sorgh... 40 0.23
gb|CW115722.1|CW115722 104_491_11106716_116_34601_080 Sorgh... 40 0.23
gb|CW221670.1|CW221670 104_656_11198034_148_37170_065 Sorgh... 40 0.23
gb|CW235777.1|CW235777 104_691_11215198_148_37495_091 Sorgh... 40 0.23
gb|CW257173.1|CW257173 104_722_11227194_116_35153_071 Sorgh... 40 0.23
gb|CW274551.1|CW274551 104_747_11404485_148_35370_087 Sorgh... 40 0.23
gb|CW372853.1|CW372853 fsbb001f048p05k0 Sorghum methylation... 40 0.23
gb|CW411724.1|CW411724 fsbb001f107a11f0 Sorghum methylation... 40 0.23
gb|CW427800.1|CW427800 fsbb001f139p16f0 Sorghum methylation... 40 0.23
gb|CW430196.1|CW430196 fsbb001f143m16k0 Sorghum methylation... 40 0.23
gb|CW438198.1|CW438198 fsbb001f155l03f0 Sorghum methylation... 40 0.23
gb|CW457788.1|CW457788 fsbb001f203m03k0 Sorghum methylation... 40 0.23
gb|BG556781.1|BG556781 EM1_38_E06.b1_A002 Embryo 1 (EM1) So... 40 0.23
gb|CF756592.1|CF756592 DSAF1_6_A10.g1_A011 Drought-stressed... 40 0.23
>gb|CW120674.1|CW120674 104_498_11109465_116_34649_043 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11109465, DNA
sequence
Length = 673
Score = 262 bits (132), Expect = 3e-068
Identities = 332/398 (83%), Gaps = 3/398 (0%)
Strand = Plus / Minus
Query: 127 ggtcatgttcgaagctggcactgacacatccttcatagtgctggaatacgccatggttca 186
||||||||| ||||||||||| || ||||| |||||||||||||||||||| |||| |||
Sbjct: 588 ggtcatgtttgaagctggcacagatacatcattcatagtgctggaatacgcgatggctca 529
Query: 187 gctgatgcgaaacccccacctgatgaccaagctacaagccgaggtgaggagcaccattat 246
||| ||||||||||||| ||| |||| ||||||||||||||||||||| ||||| |||
Sbjct: 528 gctcatgcgaaacccccgcctcatgaacaagctacaagccgaggtgagaagcac---tat 472
Query: 247 taataatggaacagagatagtcaccgaggacgagctccacagcctatcctacctcaaggc 306
|| |||| ||||||||| ||||| |||||||| |||| || ||||||| |||||
Sbjct: 471 agccaagggaaaagagatagttaccgaagacgagcttaacagtttagcctacctaaaggc 412
Query: 307 agtcgtcaaagagacgctgcggctccacatgccggctccactcctcgtgccccacctctc 366
|||| |||||||||| || || ||||| |||||||| |||||| | |||||||| |||||
Sbjct: 411 agtcatcaaagagacactccgactccatatgccggcaccactcatggtgccccatctctc 352
Query: 367 catggccgactgcaccatacaagggtacacgataccgtcgggaacacgaaccatcgtcaa 426
|||||| || |||| |||| |||| ||||||||||| || |||||||| |||| || ||
Sbjct: 351 catggctgattgcaacatagaaggatacacgataccttcaggaacacgtgccattgttaa 292
Query: 427 cagctgggctctcgcgagggaccccagctgctgggagagagccgaggagttcatgcccga 486
||||||||||| || || || || |||| ||||||| ||| || ||||||||||| ||
Sbjct: 291 tagctgggctcttgcaagagatcctagctattgggagaaagcagatgagttcatgcctga 232
Query: 487 gcgcttcatggagggcggcagtgccgcagccatggaca 524
||| |||||||| || || || |||||||| |||||||
Sbjct: 231 gcggttcatggaaggtggtagcgccgcagctatggaca 194
>gb|CL160836.1|CL160836 104_351_10805278_116_31825_334 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10805278, DNA
sequence
Length = 704
Score = 246 bits (124), Expect = 2e-063
Identities = 330/398 (82%), Gaps = 3/398 (0%)
Strand = Plus / Plus
Query: 127 ggtcatgttcgaagctggcactgacacatccttcatagtgctggaatacgccatggttca 186
||||||||| ||||||||||| || ||||| |||||||||||||||||||| |||| |||
Sbjct: 228 ggtcatgtttgaagctggcacagatacatcattcatagtgctggaatacgcgatggctca 287
Query: 187 gctgatgcgaaacccccacctgatgaccaagctacaagccgaggtgaggagcaccattat 246
||| ||||||||||||| ||| |||| ||||||||||||||||||||| ||||| |||
Sbjct: 288 gctcatgcgaaacccccgcctcatgaacaagctacaagccgaggtgagaagcac---tat 344
Query: 247 taataatggaacagagatagtcaccgaggacgagctccacagcctatcctacctcaaggc 306
|| |||| ||||||||| ||||| ||| | || |||| || ||||||| |||||
Sbjct: 345 agccaagggaaaagagatagttaccgaagactatcttaacagtttagcctacctaaaggc 404
Query: 307 agtcgtcaaagagacgctgcggctccacatgccggctccactcctcgtgccccacctctc 366
|||| |||||||||| || || ||||| |||||||| |||||| | |||||||| |||||
Sbjct: 405 agtcatcaaagagacactccgactccatatgccggcaccactcatggtgccccatctctc 464
Query: 367 catggccgactgcaccatacaagggtacacgataccgtcgggaacacgaaccatcgtcaa 426
|||||| || |||| |||| |||| ||||||||||| || |||||||| |||| || ||
Sbjct: 465 catggctgattgcaacatagaaggatacacgataccttcaggaacacgtgccattgttaa 524
Query: 427 cagctgggctctcgcgagggaccccagctgctgggagagagccgaggagttcatgcccga 486
||||||||||| || || || || |||| ||||||| ||| || ||||||||||| ||
Sbjct: 525 tagctgggctcttgcaagagatcctagctattgggagaaagcagatgagttcatgcctga 584
Query: 487 gcgcttcatggagggcggcagtgccgcagccatggaca 524
||| |||||||| || || || |||||||| |||||||
Sbjct: 585 gcggttcatggaaggtggtagcgccgcagctatggaca 622
Score = 85.7 bits (43), Expect = 4e-015
Identities = 76/87 (87%)
Strand = Plus / Plus
Query: 43 ggaggagagtgatttcatccatgtcttgctctcccttcagcaagagtacaacctgacgag 102
|||||||||||| |||||| ||||||||||||||||||| ||||| || ||||| || ||
Sbjct: 40 ggaggagagtgacttcatcgatgtcttgctctcccttcaacaagaatataacctcaccag 99
Query: 103 agatcagatcaaggcgcagctggtggt 129
|| ||| || ||||| |||||||||||
Sbjct: 100 agttcatattaaggcacagctggtggt 126
>gb|CW397543.1|CW397543 fsbb001f086i23f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f086i23, DNA
sequence
Length = 797
Score = 202 bits (102), Expect = 3e-050
Identities = 302/368 (82%), Gaps = 3/368 (0%)
Strand = Plus / Plus
Query: 129 tcatgttcgaagctggcactgacacatccttcatagtgctggaatacgccatggttcagc 188
||||||| ||||||||||| || ||||| ||||| ||||||||||| || ||| |||||
Sbjct: 47 tcatgtttgaagctggcacagatacatcattcatggtgctggaatatgcaatgactcagc 106
Query: 189 tgatgcgaaacccccacctgatgaccaagctacaagccgaggtgaggagcaccattatta 248
| ||||||||||||| | | |||| ||||||||| | ||||||||| | ||| |||
Sbjct: 107 tcatgcgaaacccccgcattatgaacaagctacatgacgaggtgagaaacac---tatag 163
Query: 249 ataatggaacagagatagtcaccgaggacgagctccacagcctatcctacctcaaggcag 308
|| |||| |||||| || || || ||||||||| | || || ||||||| |||||||
Sbjct: 164 ccaagggaaaagagatggttacagaagacgagctcgatagtttagcctacctaaaggcag 223
Query: 309 tcgtcaaagagacgctgcggctccacatgccggctccactcctcgtgccccacctctcca 368
| ||||||||||||| || ||||| |||||||| || ||||| || |||||| ||||||
Sbjct: 224 ttatcaaagagacgcttcgactccatatgccggcgccgctccttgttccccacttctcca 283
Query: 369 tggccgactgcaccatacaagggtacacgataccgtcgggaacacgaaccatcgtcaaca 428
||||||| |||| |||| |||||||||||||||| || |||||||| ||||| ||||| |
Sbjct: 284 tggccgattgcaacatagaagggtacacgataccatcaggaacacgtaccattgtcaata 343
Query: 429 gctgggctctcgcgagggaccccagctgctgggagagagccgaggagttcatgcccgagc 488
| ||||| || |||||||| || |||| ||||||| ||| |||||||||||||| ||||
Sbjct: 344 gttgggcccttgcgagggatcctagctattgggagaaagcagaggagttcatgcctgagc 403
Query: 489 gcttcatg 496
| ||||||
Sbjct: 404 ggttcatg 411
>gb|CW454185.1|CW454185 fsbb001f198i07f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f198i07, DNA
sequence
Length = 708
Score = 202 bits (102), Expect = 3e-050
Identities = 302/368 (82%), Gaps = 3/368 (0%)
Strand = Plus / Minus
Query: 129 tcatgttcgaagctggcactgacacatccttcatagtgctggaatacgccatggttcagc 188
||||||| ||||||||||| || ||||| ||||| ||||||||||| || ||| |||||
Sbjct: 400 tcatgtttgaagctggcacagatacatcattcatggtgctggaatatgcaatgactcagc 341
Query: 189 tgatgcgaaacccccacctgatgaccaagctacaagccgaggtgaggagcaccattatta 248
| ||||||||||||| | | |||| ||||||||| | ||||||||| | ||| |||
Sbjct: 340 tcatgcgaaacccccgcattatgaacaagctacatgacgaggtgagaaacac---tatag 284
Query: 249 ataatggaacagagatagtcaccgaggacgagctccacagcctatcctacctcaaggcag 308
|| |||| |||||| || || || ||||||||| | || || ||||||| |||||||
Sbjct: 283 ccaagggaaaagagatggttacagaagacgagctcgatagtttagcctacctaaaggcag 224
Query: 309 tcgtcaaagagacgctgcggctccacatgccggctccactcctcgtgccccacctctcca 368
| ||||||||||||| || ||||| |||||||| || ||||| || |||||| ||||||
Sbjct: 223 ttatcaaagagacgcttcgactccatatgccggcgccgctccttgttccccacttctcca 164
Query: 369 tggccgactgcaccatacaagggtacacgataccgtcgggaacacgaaccatcgtcaaca 428
||||||| |||| |||| |||||||||||||||| || |||||||| ||||| ||||| |
Sbjct: 163 tggccgattgcaacatagaagggtacacgataccatcaggaacacgtaccattgtcaata 104
Query: 429 gctgggctctcgcgagggaccccagctgctgggagagagccgaggagttcatgcccgagc 488
| ||||| || |||||||| || |||| ||||||| ||| |||||||||||||| ||||
Sbjct: 103 gttgggcccttgcgagggatcctagctattgggagaaagcagaggagttcatgcctgagc 44
Query: 489 gcttcatg 496
| ||||||
Sbjct: 43 ggttcatg 36
>gb|CW258305.1|CW258305 104_724_11227804_116_35165_014 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11227804, DNA
sequence
Length = 576
Score = 168 bits (85), Expect = 4e-040
Identities = 261/319 (81%), Gaps = 3/319 (0%)
Strand = Plus / Plus
Query: 129 tcatgttcgaagctggcactgacacatccttcatagtgctggaatacgccatggttcagc 188
||||||| ||||||||||| || ||||| ||||| ||||||||||| || ||| |||||
Sbjct: 251 tcatgtttgaagctggcacagatacatcattcatggtgctggaatatgcaatgactcagc 310
Query: 189 tgatgcgaaacccccacctgatgaccaagctacaagccgaggtgaggagcaccattatta 248
| ||||||||||||| | | |||| ||||||||| | ||||||||| | ||| |||
Sbjct: 311 tcatgcgaaacccccgcattatgaacaagctacatgacgaggtgagaaacac---tatag 367
Query: 249 ataatggaacagagatagtcaccgaggacgagctccacagcctatcctacctcaaggcag 308
|| |||| |||||| || || || ||||||||| | || || ||||||| |||||||
Sbjct: 368 ccaagggaaaagagatggttacagaagacgagctcgatagtttagcctacctaaaggcag 427
Query: 309 tcgtcaaagagacgctgcggctccacatgccggctccactcctcgtgccccacctctcca 368
| ||||||||||||| || ||||| |||||||| || ||||| || |||||| ||||||
Sbjct: 428 ttatcaaagagacgcttcgactccatatgccggcgccgctccttgttccccacttctcca 487
Query: 369 tggccgactgcaccatacaagggtacacgataccgtcgggaacacgaaccatcgtcaaca 428
||||||| |||| |||| |||||||||||||||| || |||||||| ||||| ||||| |
Sbjct: 488 tggccgattgcaacatagaagggtacacgataccatcaggaacacgtaccattgtcaata 547
Query: 429 gctgggctctcgcgaggga 447
| ||||| || ||||||||
Sbjct: 548 gttgggcccttgcgaggga 566
>gb|CW433110.1|CW433110 fsbb001f148d02f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f148d02, DNA
sequence
Length = 803
Score = 165 bits (83), Expect = 6e-039
Identities = 173/203 (85%)
Strand = Plus / Minus
Query: 294 cctacctcaaggcagtcgtcaaagagacgctgcggctccacatgccggctccactcctcg 353
||||||| |||||||| ||||||||||||| || ||||| |||||||| || ||||| |
Sbjct: 790 cctacctaaaggcagttatcaaagagacgcttcgactccatatgccggcgccgctccttg 731
Query: 354 tgccccacctctccatggccgactgcaccatacaagggtacacgataccgtcgggaacac 413
| |||||| ||||||||||||| |||| |||| |||||||||||||||| || |||||||
Sbjct: 730 tcccccacttctccatggccgattgcaacatagaagggtacacgataccatcaggaacac 671
Query: 414 gaaccatcgtcaacagctgggctctcgcgagggaccccagctgctgggagagagccgagg 473
| ||||| ||||| || ||||| || |||||||| || |||| ||||||| ||| ||||
Sbjct: 670 gtaccattgtcaatagttgggcccttgcgagggatcctagctattgggagaaagcagagg 611
Query: 474 agttcatgcccgagcgcttcatg 496
|||||||||| ||||| ||||||
Sbjct: 610 agttcatgcctgagcggttcatg 588
>gb|CW465043.1|CW465043 fsbb001f215j19f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f215j19, DNA
sequence
Length = 634
Score = 165 bits (83), Expect = 6e-039
Identities = 173/203 (85%)
Strand = Plus / Minus
Query: 294 cctacctcaaggcagtcgtcaaagagacgctgcggctccacatgccggctccactcctcg 353
||||||| |||||||| ||||||||||||| || ||||| |||||||| || ||||| |
Sbjct: 511 cctacctaaaggcagttatcaaagagacgcttcgactccatatgccggcgccgctccttg 452
Query: 354 tgccccacctctccatggccgactgcaccatacaagggtacacgataccgtcgggaacac 413
| |||||| ||||||||||||| |||| |||| |||||||||||||||| || |||||||
Sbjct: 451 ttccccacttctccatggccgattgcaacatagaagggtacacgataccatcaggaacac 392
Query: 414 gaaccatcgtcaacagctgggctctcgcgagggaccccagctgctgggagagagccgagg 473
| ||||| ||||| || ||||| || |||||||| || |||| ||||||| ||| ||||
Sbjct: 391 gtaccattgtcaatagttgggcccttgcgagggatcctagctattgggagaaagcagagg 332
Query: 474 agttcatgcccgagcgcttcatg 496
|||||||||| ||||| ||||||
Sbjct: 331 agttcatgcctgagcggttcatg 309
>gb|CL160835.1|CL160835 104_351_10805278_114_31824_334 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10805278, DNA
sequence
Length = 623
Score = 153 bits (77), Expect = 2e-035
Identities = 215/261 (82%)
Strand = Plus / Minus
Query: 264 tagtcaccgaggacgagctccacagcctatcctacctcaaggcagtcgtcaaagagacgc 323
|||| ||||| |||||||| |||| || ||||||| ||||||||| |||||||||| |
Sbjct: 623 tagttaccgaagacgagcttaacagtttagcctacctaaaggcagtcatcaaagagacac 564
Query: 324 tgcggctccacatgccggctccactcctcgtgccccacctctccatggccgactgcacca 383
| || ||||| |||||||| |||||| | |||||||| ||||||||||| || |||| ||
Sbjct: 563 tccgactccatatgccggcaccactcatggtgccccatctctccatggctgattgcaaca 504
Query: 384 tacaagggtacacgataccgtcgggaacacgaaccatcgtcaacagctgggctctcgcga 443
|| |||| ||||||||||| || |||||||| |||| || || ||||||||||| || |
Sbjct: 503 tagaaggatacacgataccttcaggaacacgtgccattgttaatagctgggctcttgcaa 444
Query: 444 gggaccccagctgctgggagagagccgaggagttcatgcccgagcgcttcatggagggcg 503
| || || |||| ||||||| ||| || ||||||||||| ||||| |||||||| || |
Sbjct: 443 gagatcctagctattgggagaaagcagatgagttcatgcctgagcggttcatggaaggtg 384
Query: 504 gcagtgccgcagccatggaca 524
| || |||||||| |||||||
Sbjct: 383 gtagcgccgcagctatggaca 363
>gb|BI074435.1|BI074435 IP1_15_E01.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 552
Score = 115 bits (58), Expect = 5e-024
Identities = 115/134 (85%)
Strand = Plus / Plus
Query: 363 tctccatggccgactgcaccatacaagggtacacgataccgtcgggaacacgaaccatcg 422
||||||||||||| |||| |||| |||||||||||||||| || |||||||| ||||| |
Sbjct: 3 tctccatggccgattgcaacatagaagggtacacgataccatcaggaacacgtaccattg 62
Query: 423 tcaacagctgggctctcgcgagggaccccagctgctgggagagagccgaggagttcatgc 482
|||| || ||||| || |||||||| || |||| ||||||| ||| |||||||||||||
Sbjct: 63 tcaatagttgggcccttgcgagggatcctagctattgggagaaagcagaggagttcatgc 122
Query: 483 ccgagcgcttcatg 496
| ||||| ||||||
Sbjct: 123 ctgagcggttcatg 136
>gb|CW340323.1|CW340323 104_841_11485740_116_36149_042 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11485740, DNA
sequence
Length = 699
Score = 103 bits (52), Expect = 2e-020
Identities = 94/108 (87%)
Strand = Plus / Plus
Query: 129 tcatgttcgaagctggcactgacacatccttcatagtgctggaatacgccatggttcagc 188
|||||||| ||||||||||||| ||||| ||||||||| ||||||| || ||| || |||
Sbjct: 480 tcatgttccaagctggcactgatacatcattcatagtgttggaatatgctatgattaagc 539
Query: 189 tgatgcgaaacccccacctgatgaccaagctacaagccgaggtgagga 236
| |||| ||||||| |||| |||||||||||||||| |||| ||||||
Sbjct: 540 tcatgcaaaaccccaacctcatgaccaagctacaagacgagctgagga 587
Score = 52.0 bits (26), Expect = 6e-005
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 80 cagcaagagtacaacctgacgagagatcagatcaaggcgcagctggtggt 129
||||||||||||||||| ||||| || || |||||||| || ||||||||
Sbjct: 321 cagcaagagtacaacctcacgagggaccatatcaaggcacaactggtggt 370
>gb|CW340324.1|CW340324 104_841_11485740_148_36148_042 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11485740, DNA
sequence
Length = 672
Score = 103 bits (52), Expect = 2e-020
Identities = 94/108 (87%)
Strand = Plus / Minus
Query: 129 tcatgttcgaagctggcactgacacatccttcatagtgctggaatacgccatggttcagc 188
|||||||| ||||||||||||| ||||| ||||||||| ||||||| || ||| || |||
Sbjct: 305 tcatgttccaagctggcactgatacatcattcatagtgttggaatatgctatgattaagc 246
Query: 189 tgatgcgaaacccccacctgatgaccaagctacaagccgaggtgagga 236
| |||| ||||||| |||| |||||||||||||||| |||| ||||||
Sbjct: 245 tcatgcaaaaccccaacctcatgaccaagctacaagacgagctgagga 198
Score = 65.9 bits (33), Expect = 4e-009
Identities = 93/113 (82%)
Strand = Plus / Minus
Query: 293 tcctacctcaaggcagtcgtcaaagagacgctgcggctccacatgccggctccactcctc 352
|||||||| ||||||||| |||||||||| || || ||||| || ||||| |||||
Sbjct: 147 tcctacctaaaggcagtcatcaaagagacactacgactccatggaccagctcctctcctt 88
Query: 353 gtgccccacctctccatggccgactgcaccatacaagggtacacgataccgtc 405
|||||||||||||||||||| || || |||| | || ||||||||||||||
Sbjct: 87 gtgccccacctctccatggctgaatgtgacatagagggttacacgataccgtc 35
Score = 52.0 bits (26), Expect = 6e-005
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 80 cagcaagagtacaacctgacgagagatcagatcaaggcgcagctggtggt 129
||||||||||||||||| ||||| || || |||||||| || ||||||||
Sbjct: 464 cagcaagagtacaacctcacgagggaccatatcaaggcacaactggtggt 415
>gb|CW148547.1|CW148547 104_547_11142013_148_35008_059 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11142013, DNA
sequence
Length = 614
Score = 101 bits (51), Expect = 7e-020
Identities = 93/107 (86%)
Strand = Plus / Plus
Query: 130 catgttcgaagctggcactgacacatccttcatagtgctggaatacgccatggttcagct 189
||||||| ||||||||||||| ||||| ||||||||| ||||||| || ||| || ||||
Sbjct: 1 catgttccaagctggcactgatacatcattcatagtgttggaatatgctatgattaagct 60
Query: 190 gatgcgaaacccccacctgatgaccaagctacaagccgaggtgagga 236
|||| ||||||| |||| |||||||||||||||| |||| ||||||
Sbjct: 61 catgcaaaaccccaacctcatgaccaagctacaagacgagctgagga 107
Score = 65.9 bits (33), Expect = 4e-009
Identities = 93/113 (82%)
Strand = Plus / Plus
Query: 293 tcctacctcaaggcagtcgtcaaagagacgctgcggctccacatgccggctccactcctc 352
|||||||| ||||||||| |||||||||| || || ||||| || ||||| |||||
Sbjct: 158 tcctacctaaaggcagtcatcaaagagacactacgactccatggaccagctcctctcctt 217
Query: 353 gtgccccacctctccatggccgactgcaccatacaagggtacacgataccgtc 405
|||||||||||||||||||| || || |||| | || ||||||||||||||
Sbjct: 218 gtgccccacctctccatggctgaatgtgacatagagggttacacgataccgtc 270
>gb|BZ341019.1|BZ341019 ic42e12.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone ic42e12 5', DNA sequence
Length = 720
Score = 91.7 bits (46), Expect = 7e-017
Identities = 94/110 (85%)
Strand = Plus / Plus
Query: 387 aagggtacacgataccgtcgggaacacgaaccatcgtcaacagctgggctctcgcgaggg 446
|||||||||||||||| || |||||||| ||||| ||||| || ||||| || |||||||
Sbjct: 5 aagggtacacgataccatcaggaacacgtaccattgtcaatagttgggcccttgcgaggg 64
Query: 447 accccagctgctgggagagagccgaggagttcatgcccgagcgcttcatg 496
| || |||| ||||||| ||| |||||||||||||| ||||| ||||||
Sbjct: 65 atcctagctattgggagaaagcagaggagttcatgcctgagcggttcatg 114
>gb|CW120675.1|CW120675 104_498_11109465_148_34653_043 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11109465, DNA
sequence
Length = 702
Score = 85.7 bits (43), Expect = 4e-015
Identities = 77/87 (88%), Gaps = 1/87 (1%)
Strand = Plus / Plus
Query: 43 ggaggagagtgatttcatccatgtcttgctctcccttcagcaagagtacaacctgacgag 102
|||||||||||| |||||| ||||||||||||||||||| ||||| || ||||| || ||
Sbjct: 611 ggaggagagtgacttcatcgatgtcttgctctcccttca-caagaatataacctcaccag 669
Query: 103 agatcagatcaaggcgcagctggtggt 129
|||||| || ||||| |||||||||||
Sbjct: 670 agatcatattaaggcacagctggtggt 696
>gb|CW139649.1|CW139649 104_529_11135355_116_34906_002 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11135355, DNA
sequence
Length = 304
Score = 85.7 bits (43), Expect = 4e-015
Identities = 73/83 (87%)
Strand = Plus / Minus
Query: 47 gagagtgatttcatccatgtcttgctctcccttcagcaagagtacaacctgacgagagat 106
|||||||| ||||| ||||||| ||||||||||| | ||| |||||||| |||||||||
Sbjct: 150 gagagtgacttcattgatgtcttactctcccttcaactagaatacaacctcacgagagat 91
Query: 107 cagatcaaggcgcagctggtggt 129
|| || |||||||||||||||||
Sbjct: 90 catattaaggcgcagctggtggt 68
>gb|CW164798.1|CW164798 104_572_11152171_148_36466_066 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11152171, DNA
sequence
Length = 668
Score = 85.7 bits (43), Expect = 4e-015
Identities = 73/83 (87%)
Strand = Plus / Minus
Query: 47 gagagtgatttcatccatgtcttgctctcccttcagcaagagtacaacctgacgagagat 106
|||||||| ||||| ||||||| ||||||||||| | ||| |||||||| |||||||||
Sbjct: 145 gagagtgacttcattgatgtcttactctcccttcaactagaatacaacctcacgagagat 86
Query: 107 cagatcaaggcgcagctggtggt 129
|| || |||||||||||||||||
Sbjct: 85 catattaaggcgcagctggtggt 63
>gb|CW302662.1|CW302662 104_786_11464835_148_35668_034 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11464835, DNA
sequence
Length = 631
Score = 85.7 bits (43), Expect = 4e-015
Identities = 73/83 (87%)
Strand = Plus / Plus
Query: 47 gagagtgatttcatccatgtcttgctctcccttcagcaagagtacaacctgacgagagat 106
|||||||| ||||| ||||||| ||||||||||| | ||| |||||||| |||||||||
Sbjct: 443 gagagtgacttcattgatgtcttactctcccttcaactagaatacaacctcacgagagat 502
Query: 107 cagatcaaggcgcagctggtggt 129
|| || |||||||||||||||||
Sbjct: 503 catattaaggcgcagctggtggt 525
>gb|CW480612.1|CW480612 fsbb001f239m07k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f239m07, DNA
sequence
Length = 693
Score = 83.8 bits (42), Expect = 2e-014
Identities = 90/106 (84%)
Strand = Plus / Minus
Query: 129 tcatgttcgaagctggcactgacacatccttcatagtgctggaatacgccatggttcagc 188
||||||| ||||||||||| || ||||| ||||| ||||||||||| || ||| |||||
Sbjct: 159 tcatgtttgaagctggcacagatacatcattcatggtgctggaatatgcaatgactcagc 100
Query: 189 tgatgcgaaacccccacctgatgaccaagctacaagccgaggtgag 234
| ||||||||||||| | | |||| ||||||||| | |||||||||
Sbjct: 99 tcatgcgaaacccccgcattatgaacaagctacatgacgaggtgag 54
>gb|CW465044.1|CW465044 fsbb001f215j19k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f215j19, DNA
sequence
Length = 625
Score = 81.8 bits (41), Expect = 7e-014
Identities = 89/105 (84%)
Strand = Plus / Plus
Query: 129 tcatgttcgaagctggcactgacacatccttcatagtgctggaatacgccatggttcagc 188
||||||| ||||||||||| || ||||| ||||| ||||||||||| || ||| |||||
Sbjct: 454 tcatgtttgaagctggcacagatacatcattcatggtgctggaatatgcaatgactcagc 513
Query: 189 tgatgcgaaacccccacctgatgaccaagctacaagccgaggtga 233
| ||||||||||||| | | |||| ||||||||| | ||||||||
Sbjct: 514 tcatgcgaaacccccgcattatgaacaagctacatgacgaggtga 558
>gb|BM329546.1|BM329546 PIC1_39_E06.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 527
Score = 65.9 bits (33), Expect = 4e-009
Identities = 93/113 (82%)
Strand = Plus / Plus
Query: 293 tcctacctcaaggcagtcgtcaaagagacgctgcggctccacatgccggctccactcctc 352
|||||||| ||||||||| |||||||||| || || ||||| || ||||| |||||
Sbjct: 37 tcctacctaaaggcagtcatcaaagagacactacgactccatggaccagctcctctcctt 96
Query: 353 gtgccccacctctccatggccgactgcaccatacaagggtacacgataccgtc 405
|||||||||||||||||||| || || |||| | || ||||||||||||||
Sbjct: 97 gtgccccacctctccatggctgaatgtgacatagagggttacacgataccgtc 149
>gb|BM318110.1|BM318110 PI1_78_F04.g9_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 644
Score = 60.0 bits (30), Expect = 3e-007
Identities = 92/113 (81%)
Strand = Plus / Plus
Query: 293 tcctacctcaaggcagtcgtcaaagagacgctgcggctccacatgccggctccactcctc 352
|||||| | ||||||||| |||||||||| || || ||||| || ||||| |||||
Sbjct: 65 tcctacntaaaggcagtcatcaaagagacactacgactccatggaccagctcctctcctt 124
Query: 353 gtgccccacctctccatggccgactgcaccatacaagggtacacgataccgtc 405
|||||||||||||||||||| || || |||| | || ||||||||||||||
Sbjct: 125 gtgccccacctctccatggctgaatgtgacatagagggttacacgataccgtc 177
>gb|CL179028.1|CL179028 104_387_10895001_148_31905_297 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10895001, DNA
sequence
Length = 660
Score = 54.0 bits (27), Expect = 2e-005
Identities = 45/51 (88%)
Strand = Plus / Plus
Query: 186 agctgatgcgaaacccccacctgatgaccaagctacaagccgaggtgagga 236
|||||||||| | ||| || || ||| ||||||||||||||||||||||||
Sbjct: 243 agctgatgcgcagccctcatctcatggccaagctacaagccgaggtgagga 293
>gb|CW114222.1|CW114222 104_488_11105877_116_34557_081 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11105877, DNA
sequence
Length = 516
Score = 54.0 bits (27), Expect = 2e-005
Identities = 45/51 (88%)
Strand = Plus / Plus
Query: 186 agctgatgcgaaacccccacctgatgaccaagctacaagccgaggtgagga 236
|||||||||| | ||| || || ||| ||||||||||||||||||||||||
Sbjct: 352 agctgatgcgcagccctcatctcatggccaagctacaagccgaggtgagga 402
>gb|CW114223.1|CW114223 104_488_11105877_148_34561_081 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11105877, DNA
sequence
Length = 647
Score = 54.0 bits (27), Expect = 2e-005
Identities = 45/51 (88%)
Strand = Plus / Minus
Query: 186 agctgatgcgaaacccccacctgatgaccaagctacaagccgaggtgagga 236
|||||||||| | ||| || || ||| ||||||||||||||||||||||||
Sbjct: 478 agctgatgcgcagccctcatctcatggccaagctacaagccgaggtgagga 428
>gb|CW241801.1|CW241801 104_701_11218975_148_37556_030 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11218975, DNA
sequence
Length = 716
Score = 54.0 bits (27), Expect = 2e-005
Identities = 45/51 (88%)
Strand = Plus / Minus
Query: 186 agctgatgcgaaacccccacctgatgaccaagctacaagccgaggtgagga 236
|||||||||| | ||| || || ||| ||||||||||||||||||||||||
Sbjct: 170 agctgatgcgcagccctcatctcatggccaagctacaagccgaggtgagga 120
>gb|CW457787.1|CW457787 fsbb001f203m03f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f203m03, DNA
sequence
Length = 728
Score = 54.0 bits (27), Expect = 2e-005
Identities = 45/51 (88%)
Strand = Plus / Minus
Query: 186 agctgatgcgaaacccccacctgatgaccaagctacaagccgaggtgagga 236
|||||||||| | ||| || || ||| ||||||||||||||||||||||||
Sbjct: 621 agctgatgcgcagccctcatctcatggccaagctacaagccgaggtgagga 571
>gb|BE596360.1|BE596360 PI1_49_H08.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 359
Score = 54.0 bits (27), Expect = 2e-005
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 11 gagcgtgacgctgacgctgacgctgacggggagga 45
||||||||||||||||||| || ||||||||||||
Sbjct: 265 gagcgtgacgctgacgctgtcgttgacggggagga 231
>gb|CW148546.1|CW148546 104_547_11142013_116_35012_059 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11142013, DNA
sequence
Length = 709
Score = 50.1 bits (25), Expect = 2e-004
Identities = 55/65 (84%)
Strand = Plus / Minus
Query: 341 gctccactcctcgtgccccacctctccatggccgactgcaccatacaagggtacacgata 400
||||| ||||| |||||||||||||||||||| || || |||| | || |||||||||
Sbjct: 674 gctcctctccttgtgccccacctctccatggctgaatgtgacatagagggttacacgata 615
Query: 401 ccgtc 405
|||||
Sbjct: 614 ccgtc 610
>gb|CW300237.1|CW300237 104_783_11463546_116_36252_071 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11463546, DNA
sequence
Length = 574
Score = 48.1 bits (24), Expect = 0.001
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 213 ccaagctacaagccgaggtgagga 236
||||||||||||||||||||||||
Sbjct: 188 ccaagctacaagccgaggtgagga 211
>gb|CW302661.1|CW302661 104_786_11464835_116_35664_034 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11464835, DNA
sequence
Length = 619
Score = 48.1 bits (24), Expect = 0.001
Identities = 89/110 (80%), Gaps = 3/110 (2%)
Strand = Plus / Minus
Query: 473 gagttcatgcccgagcgcttcatggagggcggcagtgccgcagccatggacagcaacaag 532
||||||||||| ||||| |||||||| || || || |||||||| ||||||| | |||
Sbjct: 610 gagttcatgccggagcgtttcatggaaggaggtagcgccgcagctatggaca---ataag 554
Query: 533 gggaacgacttccagtacataccgttcggcgcagggagaaggatgtgccc 582
|| || || ||||| ||| | || || || |||||| |||||||||||||
Sbjct: 553 ggaaatgatttccaatacttgccatttggggcagggcgaaggatgtgccc 504
>gb|CW053460.1|CW053460 104_293_10515976_114_30185 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10515976,
DNA sequence
Length = 238
Score = 46.1 bits (23), Expect = 0.004
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 16 tgacgctgacgctgacgctgacg 38
|||||||||||||||||||||||
Sbjct: 63 tgacgctgacgctgacgctgacg 85
>gb|CW182673.1|CW182673 104_598_11164205_148_36668_027 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11164205, DNA
sequence
Length = 632
Score = 46.1 bits (23), Expect = 0.004
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 16 tgacgctgacgctgacgctgacg 38
|||||||||||||||||||||||
Sbjct: 248 tgacgctgacgctgacgctgacg 270
>gb|CD211688.1|CD211688 HS1_63_A09.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_63_A09_A012 5', mRNA sequence
Length = 579
Score = 46.1 bits (23), Expect = 0.004
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 11 gagcgtgacgctgacgctgacgctgacggggagga 45
|||||||||||||| |||| || ||||||||||||
Sbjct: 301 gagcgtgacgctgatgctgtcgttgacggggagga 267
>gb|CX610722.1|CX610722 ANR1_20_A07.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_20_A07_A002 5', mRNA sequence
Length = 542
Score = 46.1 bits (23), Expect = 0.004
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 11 gagcgtgacgctgacgctgacgctgacggggagga 45
|||||||||||||| |||| || ||||||||||||
Sbjct: 285 gagcgtgacgctgatgctgtcgttgacggggagga 251
>gb|CW030659.1|CW030659 104_258_10500355_114_30403 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10500355, DNA
sequence
Length = 821
Score = 44.1 bits (22), Expect = 0.015
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 175 cgccatggttcagctgatgcgaaacccccacctgatgaccaagctacaag 224
|||||||| | |||||||||| ||||| || | |||| ||||||||||||
Sbjct: 126 cgccatggctgagctgatgcgcaacccacagcagatggccaagctacaag 175
>gb|CW119823.1|CW119823 104_497_11108979_116_34640_016 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11108979, DNA
sequence
Length = 599
Score = 44.1 bits (22), Expect = 0.015
Identities = 52/62 (83%)
Strand = Plus / Plus
Query: 533 gggaacgacttccagtacataccgttcggcgcagggagaaggatgtgccccgccatcagc 592
|||| ||||| |||| ||| ||||||||||| ||| | ||||| ||||||| |||||||
Sbjct: 474 gggaccgactaccagctcatcccgttcggcgccgggcggaggatctgccccggcatcagc 533
Query: 593 tt 594
||
Sbjct: 534 tt 535
>gb|CW128537.1|CW128537 104_510_11114060_116_34759_078 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11114060, DNA
sequence
Length = 628
Score = 44.1 bits (22), Expect = 0.015
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 175 cgccatggttcagctgatgcgaaacccccacctgatgaccaagctacaag 224
|||||||| | |||||||||| ||||| || | |||| ||||||||||||
Sbjct: 464 cgccatggctgagctgatgcgcaacccacagcagatggccaagctacaag 415
>gb|CW294837.1|CW294837 104_775_11415396_116_36233_034 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11415396, DNA
sequence
Length = 703
Score = 44.1 bits (22), Expect = 0.015
Identities = 46/54 (85%)
Strand = Plus / Minus
Query: 529 caaggggaacgacttccagtacataccgttcggcgcagggagaaggatgtgccc 582
|||||||| |||||| ||||| | |||||||| ||||| |||||||||||||
Sbjct: 297 caaggggacggacttcgagtacgtgccgttcggggcaggacgaaggatgtgccc 244
>gb|CW294838.1|CW294838 104_775_11415396_148_36234_034 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11415396, DNA
sequence
Length = 711
Score = 44.1 bits (22), Expect = 0.015
Identities = 46/54 (85%)
Strand = Plus / Plus
Query: 529 caaggggaacgacttccagtacataccgttcggcgcagggagaaggatgtgccc 582
|||||||| |||||| ||||| | |||||||| ||||| |||||||||||||
Sbjct: 440 caaggggacggacttcgagtacgtgccgttcggggcaggacgaaggatgtgccc 493
>gb|AW565784.1|AW565784 LG1_349_C06.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 651
Score = 44.1 bits (22), Expect = 0.015
Identities = 52/62 (83%)
Strand = Plus / Plus
Query: 533 gggaacgacttccagtacataccgttcggcgcagggagaaggatgtgccccgccatcagc 592
|||| ||||| |||| ||| ||||||||||| ||| | ||||| ||||||| |||||||
Sbjct: 262 gggaccgactaccagctcatcccgttcggcgccgggcggaggatctgccccggcatcagc 321
Query: 593 tt 594
||
Sbjct: 322 tt 323
>gb|BE366751.1|BE366751 PI1_3_F06.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 577
Score = 44.1 bits (22), Expect = 0.015
Identities = 46/54 (85%)
Strand = Plus / Plus
Query: 529 caaggggaacgacttccagtacataccgttcggcgcagggagaaggatgtgccc 582
|||||||| |||||| ||||| | |||||||| ||||| |||||||||||||
Sbjct: 157 caaggggacggacttcgagtacgtgccgttcggggcaggacgaaggatgtgccc 210
>gb|BG051890.1|BG051890 RHIZ2_6_B07.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 484
Score = 44.1 bits (22), Expect = 0.015
Identities = 49/58 (84%)
Strand = Plus / Plus
Query: 357 cccacctctccatggccgactgcaccatacaagggtacacgataccgtcgggaacacg 414
|||||||||||||||| || || |||| | || |||||||||||||| ||||||||
Sbjct: 1 cccacctctccatggctgaatgtgacatagagggttacacgataccgtctggaacacg 58
>gb|BG356554.1|BG356554 EM1_23_H05.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 570
Score = 44.1 bits (22), Expect = 0.015
Identities = 46/54 (85%)
Strand = Plus / Plus
Query: 529 caaggggaacgacttccagtacataccgttcggcgcagggagaaggatgtgccc 582
||||||||| |||||||||| ||| || || || || || ||||||||||||||
Sbjct: 156 caaggggaatgacttccagttcattccatttggagctggtagaaggatgtgccc 209
Score = 42.1 bits (21), Expect = 0.059
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 458 tgggagagagccgaggagttcatgcccgagcgcttcatgga 498
||||||| ||| |||||||||||||| ||| | ||||||||
Sbjct: 82 tgggagaaagcggaggagttcatgccagagaggttcatgga 122
>gb|BG410749.1|BG410749 EM1_25_F07.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 646
Score = 44.1 bits (22), Expect = 0.015
Identities = 46/54 (85%)
Strand = Plus / Plus
Query: 529 caaggggaacgacttccagtacataccgttcggcgcagggagaaggatgtgccc 582
||||||||| |||||||||| ||| || || || || || ||||||||||||||
Sbjct: 257 caaggggaatgacttccagttcattccatttggagctggtagaaggatgtgccc 310
Score = 42.1 bits (21), Expect = 0.059
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 458 tgggagagagccgaggagttcatgcccgagcgcttcatgga 498
||||||| ||| |||||||||||||| ||| | ||||||||
Sbjct: 183 tgggagaaagcggaggagttcatgccagagaggttcatgga 223
>gb|BG463329.1|BG463329 EM1_48_B12.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 528
Score = 44.1 bits (22), Expect = 0.015
Identities = 46/54 (85%)
Strand = Plus / Plus
Query: 529 caaggggaacgacttccagtacataccgttcggcgcagggagaaggatgtgccc 582
||||||||| |||||||||| ||| || || || || || ||||||||||||||
Sbjct: 231 caaggggaatgacttccagttcattccatttggagctggtagaaggatgtgccc 284
>gb|BG556992.1|BG556992 EM1_41_C01.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 446
Score = 44.1 bits (22), Expect = 0.015
Identities = 46/54 (85%)
Strand = Plus / Plus
Query: 529 caaggggaacgacttccagtacataccgttcggcgcagggagaaggatgtgccc 582
||||||||| |||||||||| ||| || || || || || ||||||||||||||
Sbjct: 34 caaggggaatgacttccagttcattccatttggagctggtagaaggatgtgccc 87
>gb|BG557149.1|BG557149 EM1_43_B10.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 579
Score = 44.1 bits (22), Expect = 0.015
Identities = 46/54 (85%)
Strand = Plus / Plus
Query: 529 caaggggaacgacttccagtacataccgttcggcgcagggagaaggatgtgccc 582
||||||||| |||||||||| ||| || || || || || ||||||||||||||
Sbjct: 184 caaggggaatgacttccagttcattccatttggagctggtagaaggatgtgccc 237
Score = 42.1 bits (21), Expect = 0.059
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 458 tgggagagagccgaggagttcatgcccgagcgcttcatgga 498
||||||| ||| |||||||||||||| ||| | ||||||||
Sbjct: 110 tgggagaaagcggaggagttcatgccagagaggttcatgga 150
>gb|BM318020.1|BM318020 PI1_36_E06.g9_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 631
Score = 44.1 bits (22), Expect = 0.015
Identities = 46/54 (85%)
Strand = Plus / Plus
Query: 529 caaggggaacgacttccagtacataccgttcggcgcagggagaaggatgtgccc 582
|||||||| |||||| ||||| | |||||||| ||||| |||||||||||||
Sbjct: 224 caaggggacggacttcgagtacgtgccgttcggggcaggacgaaggatgtgccc 277
>gb|CF427182.1|CF427182 PH1_4_G10.b1_A002 Phosphorous-deficient seedlings Sorghum bicolor
cDNA clone PH1_4_G10_A002 3', mRNA sequence
Length = 579
Score = 44.1 bits (22), Expect = 0.015
Identities = 46/54 (85%)
Strand = Plus / Plus
Query: 529 caaggggaacgacttccagtacataccgttcggcgcagggagaaggatgtgccc 582
|||||||| |||||| ||||| | |||||||| ||||| |||||||||||||
Sbjct: 161 caaggggacggacttcgagtacgtgccgttcggggcaggacgaaggatgtgccc 214
>gb|CL170464.1|CL170464 104_371_10813835_148_31790_155 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10813835, DNA
sequence
Length = 592
Score = 42.1 bits (21), Expect = 0.059
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 438 tcgcgagggaccccagctgctggga 462
|||||||||||||||||| ||||||
Sbjct: 281 tcgcgagggaccccagctcctggga 257
Score = 42.1 bits (21), Expect = 0.059
Identities = 45/53 (84%)
Strand = Plus / Minus
Query: 530 aaggggaacgacttccagtacataccgttcggcgcagggagaaggatgtgccc 582
||||||| |||||| ||||| | |||||||| ||||| |||||||||||||
Sbjct: 204 aaggggacggacttcgagtacgtgccgttcggggcaggacgaaggatgtgccc 152
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 162,206
Number of Sequences: 832831
Number of extensions: 162206
Number of successful extensions: 45451
Number of sequences better than 0.5: 91
Number of HSP's better than 0.5 without gapping: 90
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 45252
Number of HSP's gapped (non-prelim): 184
length of query: 613
length of database: 491,359,669
effective HSP length: 19
effective length of query: 594
effective length of database: 475,535,880
effective search space: 282468312720
effective search space used: 282468312720
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)