BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3848982.2.1
(697 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BG049103.1|BG049103 OV1_23_C12.g1_A002 Ovary 1 (OV1) Sor... 519 e-145
gb|BG049047.1|BG049047 OV1_22_E11.g1_A002 Ovary 1 (OV1) Sor... 464 e-129
gb|BG049025.1|BG049025 OV1_22_C07.g1_A002 Ovary 1 (OV1) Sor... 402 e-110
gb|BZ339450.1|BZ339450 ic32c10.b1 WGS-SbicolorF (JM107 adap... 381 e-104
gb|CW241492.1|CW241492 104_700_11218800_148_37543_086 Sorgh... 381 e-104
gb|BG048752.1|BG048752 OV1_22_E11.b1_A002 Ovary 1 (OV1) Sor... 377 e-103
gb|CW233768.1|CW233768 104_687_11213622_116_37380_027 Sorgh... 357 9e-097
gb|CW241491.1|CW241491 104_700_11218800_116_37544_086 Sorgh... 285 3e-075
gb|BG047628.1|BG047628 OV1_26_C01.b1_A002 Ovary 1 (OV1) Sor... 274 1e-071
gb|CW233769.1|CW233769 104_687_11213622_148_37379_027 Sorgh... 218 5e-055
gb|CW369801.1|CW369801 fsbb001f044g11f0 Sorghum methylation... 170 1e-040
gb|BG048512.1|BG048512 OV1_14_E03.g2_A002 Ovary 1 (OV1) Sor... 170 1e-040
gb|BH245862.1|BH245862 pSB1435.2 S. bicolor BTx623 PstI-dig... 143 2e-032
gb|CW377780.1|CW377780 fsbb001f056d24k0 Sorghum methylation... 143 2e-032
gb|CW445527.1|CW445527 fsbb001f170l16k0 Sorghum methylation... 143 2e-032
gb|BG048811.1|BG048811 OV1_23_C12.b1_A002 Ovary 1 (OV1) Sor... 123 2e-026
gb|CW268309.1|CW268309 104_739_11401215_148_35310_064 Sorgh... 117 1e-024
gb|BG048731.1|BG048731 OV1_22_C07.b1_A002 Ovary 1 (OV1) Sor... 117 1e-024
gb|CD219865.1|CD219865 CCC1_59_D05.g1_A007 Callus culture/c... 117 1e-024
gb|CW396909.1|CW396909 fsbb001f085j02k0 Sorghum methylation... 103 2e-020
gb|BG158255.1|BG158255 EM1_9_D12.b1_A002 Embryo 1 (EM1) Sor... 94 2e-017
gb|CD219585.1|CD219585 CCC1_57_C04.g1_A007 Callus culture/c... 92 8e-017
gb|CD226852.1|CD226852 CCC1_48_E12.g1_A007 Callus culture/c... 92 8e-017
gb|CW134146.1|CW134146 104_518_11117151_116_34820_060 Sorgh... 90 3e-016
gb|CW433265.1|CW433265 fsbb001f148g13f0 Sorghum methylation... 88 1e-015
gb|BF656823.1|BF656823 OV2_23_D07.g1_A002 Ovary 2 (OV2) Sor... 88 1e-015
gb|CX613415.1|CX613415 GABR1_8_B11.b1_A002 GA- or brassinol... 88 1e-015
gb|DN552513.1|DN552513 pSHR-RT-A-H1_H09_C105 pSHR Sorghum h... 88 1e-015
gb|CD231800.1|CD231800 SS1_30_D03.b1_A012 Salt-stressed see... 80 3e-013
gb|BZ349112.1|BZ349112 hq87c03.g1 WGS-SbicolorF (JM107 adap... 78 1e-012
gb|CL165129.1|CL165129 104_359_10808375_114_31816_359 Sorgh... 78 1e-012
gb|CW062333.1|CW062333 104_307_10521280_5_30083 Sorghum met... 78 1e-012
gb|CW204078.1|CW204078 104_631_11186348_148_37094_066 Sorgh... 78 1e-012
gb|CW402616.1|CW402616 fsbb001f093p05k0 Sorghum methylation... 78 1e-012
gb|BE357973.1|BE357973 DG1_23_H03.g1_A002 Dark Grown 1 (DG1... 78 1e-012
gb|CD230488.1|CD230488 SS1_44_B08.b1_A012 Salt-stressed see... 78 1e-012
gb|CD233638.1|CD233638 SS1_3_G02.b1_A012 Salt-stressed seed... 78 1e-012
gb|CD428756.1|CD428756 ETH1_36_H11.b1_A002 Ethylene-treated... 78 1e-012
gb|CD432496.1|CD432496 ETH1_30_C04.b1_A002 Ethylene-treated... 78 1e-012
gb|CD462510.1|CD462510 ETH1_38_D10.b1_A002 Ethylene-treated... 78 1e-012
gb|CN146372.1|CN146372 WOUND1_39_H03.g1_A002 Wounded leaves... 78 1e-012
gb|CW253166.1|CW253166 104_716_11224935_116_35104_054 Sorgh... 72 8e-011
gb|CW376698.1|CW376698 fsbb001f054l06f0 Sorghum methylation... 72 8e-011
gb|CW480555.1|CW480555 fsbb001f239k22f0 Sorghum methylation... 72 8e-011
gb|BG159238.1|BG159238 OV2_5_B04.g1_A002 Ovary 2 (OV2) Sorg... 72 8e-011
gb|CD210102.1|CD210102 HS1_57_F11.b1_A012 Heat-shocked seed... 72 8e-011
gb|CD221639.1|CD221639 CCC1_70_G11.b1_A007 Callus culture/c... 72 8e-011
gb|CD221661.1|CD221661 CCC1_70_E11.b1_A007 Callus culture/c... 72 8e-011
gb|CW133289.1|CW133289 104_517_11116679_148_34812_096 Sorgh... 70 3e-010
gb|CN125001.1|CN125001 RHOH1_8_F08.b1_A002 Acid- and alkali... 70 3e-010
gb|CW268308.1|CW268308 104_739_11401215_116_35306_064 Sorgh... 68 1e-009
gb|CN146289.1|CN146289 WOUND1_39_H03.b1_A002 Wounded leaves... 66 5e-009
gb|CW450105.1|CW450105 fsbb001f188j04f0 Sorghum methylation... 64 2e-008
gb|BE361244.1|BE361244 DG1_70_C10.g1_A002 Dark Grown 1 (DG1... 64 2e-008
gb|BG932946.1|BG932946 DG1_69_C11.g1_A002 Dark Grown 1 (DG1... 64 2e-008
gb|CD206178.1|CD206178 HS1_21_C02.b1_A012 Heat-shocked seed... 64 2e-008
gb|CD220424.1|CD220424 CCC1_67_F12.b1_A007 Callus culture/c... 64 2e-008
gb|CN131734.1|CN131734 OX1_2_B01.b1_A002 Oxidatively-stress... 64 2e-008
gb|BI099614.1|BI099614 IP1_44_E02.g1_A002 Immature pannicle... 62 7e-008
gb|CD229975.1|CD229975 SS1_40_F09.b1_A012 Salt-stressed see... 62 7e-008
gb|CF427028.1|CF427028 PH1_3_A04.b1_A002 Phosphorous-defici... 62 7e-008
gb|CN128146.1|CN128146 RHOH1_27_G06.b1_A002 Acid- and alkal... 62 7e-008
gb|CD219482.1|CD219482 CCC1_57_C04.b1_A007 Callus culture/c... 60 3e-007
gb|CD226829.1|CD226829 CCC1_48_E12.b1_A007 Callus culture/c... 60 3e-007
gb|BZ367792.1|BZ367792 id06f03.b1 WGS-SbicolorF (JM107 adap... 58 1e-006
gb|CW041615.1|CW041615 104_275_10506649_114_30284 Sorghum m... 58 1e-006
gb|CW060786.1|CW060786 104_304_10520046_114_30143 Sorghum m... 58 1e-006
gb|CW115054.1|CW115054 104_490_11106333_116_34592_095 Sorgh... 58 1e-006
gb|CW134909.1|CW134909 104_519_11117560_116_34831_060 Sorgh... 58 1e-006
gb|CW134910.1|CW134910 104_519_11117560_148_34827_060 Sorgh... 58 1e-006
gb|CW256800.1|CW256800 104_722_11226991_116_35152_032 Sorgh... 58 1e-006
gb|CW323837.1|CW323837 104_818_11476843_116_35904_078 Sorgh... 58 1e-006
gb|CW323838.1|CW323838 104_818_11476843_148_35908_078 Sorgh... 58 1e-006
gb|CW372271.1|CW372271 fsbb001f048b19k0 Sorghum methylation... 58 1e-006
gb|CW387885.1|CW387885 fsbb001f072g19f0 Sorghum methylation... 58 1e-006
gb|BE360258.1|BE360258 DG1_62_E04.b1_A002 Dark Grown 1 (DG1... 58 1e-006
gb|BE360318.1|BE360318 DG1_62_E04.g1_A002 Dark Grown 1 (DG1... 58 1e-006
gb|BG240144.1|BG240144 OV1_18_D11.b1_A002 Ovary 1 (OV1) Sor... 58 1e-006
gb|BG559467.1|BG559467 RHIZ2_55_B12.b1_A003 Rhizome2 (RHIZ2... 58 1e-006
gb|BG560106.1|BG560106 RHIZ2_69_D11.b1_A003 Rhizome2 (RHIZ2... 58 1e-006
gb|BG739602.1|BG739602 EM1_82_H04.b1_A002 Embryo 1 (EM1) So... 58 1e-006
gb|BM323374.1|BM323374 PIC1_18_E10.b1_A002 Pathogen-infecte... 58 1e-006
gb|CD219737.1|CD219737 CCC1_58_F06.g1_A007 Callus culture/c... 58 1e-006
gb|CD223869.1|CD223869 CCC1_30_D11.g1_A007 Callus culture/c... 58 1e-006
gb|CD225188.1|CD225188 CCC1_38_A02.g1_A007 Callus culture/c... 58 1e-006
gb|CD227465.1|CD227465 CCC1_51_H01.g1_A007 Callus culture/c... 58 1e-006
gb|CD229498.1|CD229498 CCC1_16_D06.g1_A007 Callus culture/c... 58 1e-006
gb|CD236070.1|CD236070 SS1_25_E11.g1_A012 Salt-stressed see... 58 1e-006
gb|BQ479087.1|BQ479087 pRC-1199 pRC Sorghum halepense cDNA ... 58 1e-006
gb|CD428079.1|CD428079 ETH1_32_E01.g1_A002 Ethylene-treated... 58 1e-006
gb|CD430094.1|CD430094 ETH1_13_H07.g1_A002 Ethylene-treated... 58 1e-006
gb|CD431281.1|CD431281 ETH1_7_B06.g1_A002 Ethylene-treated ... 58 1e-006
gb|CD432249.1|CD432249 ETH1_26_B01.g1_A002 Ethylene-treated... 58 1e-006
gb|CF427585.1|CF427585 PH1_16_B04.g1_A002 Phosphorous-defic... 58 1e-006
gb|CF489807.1|CF489807 POL1_59_F02.g1_A002 Pollen Sorghum b... 58 1e-006
gb|CN124076.1|CN124076 RHOH1_2_B05.g1_A002 Acid- and alkali... 58 1e-006
gb|CN126589.1|CN126589 RHOH1_18_C01.b1_A002 Acid- and alkal... 58 1e-006
gb|CN126677.1|CN126677 RHOH1_18_C01.g1_A002 Acid- and alkal... 58 1e-006
gb|CN128492.1|CN128492 RHOH1_29_H02.g1_A002 Acid- and alkal... 58 1e-006
gb|CN129367.1|CN129367 RHOH1_35_B11.b3_A002 Acid- and alkal... 58 1e-006
gb|CN129415.1|CN129415 RHOH1_35_G04.b3_A002 Acid- and alkal... 58 1e-006
gb|CN129456.1|CN129456 RHOH1_35_B11.g1_A002 Acid- and alkal... 58 1e-006
gb|CN129996.1|CN129996 RHOH1_38_E01.g1_A002 Acid- and alkal... 58 1e-006
gb|CN130196.1|CN130196 RHOH1_39_H10.g1_A002 Acid- and alkal... 58 1e-006
gb|CN131258.1|CN131258 RHOH1_46_G08.g1_A002 Acid- and alkal... 58 1e-006
gb|CN134421.1|CN134421 OX1_26_F05.b1_A002 Oxidatively-stres... 58 1e-006
gb|CN135165.1|CN135165 OX1_31_B04.b1_A002 Oxidatively-stres... 58 1e-006
gb|CN140959.1|CN140959 OX1_48_A09.g1_A002 Oxidatively-stres... 58 1e-006
gb|CN141913.1|CN141913 WOUND1_2_E01.g1_A002 Wounded leaves ... 58 1e-006
gb|CN144039.1|CN144039 WOUND1_19_G06.g1_A002 Wounded leaves... 58 1e-006
gb|CN146331.1|CN146331 WOUND1_39_D02.g1_A002 Wounded leaves... 58 1e-006
gb|CN150200.1|CN150200 WOUND1_67_D03.g1_A002 Wounded leaves... 58 1e-006
gb|CX606110.1|CX606110 ANR1_1_E07.b1_A002 Anaerobic roots S... 58 1e-006
gb|CX606202.1|CX606202 ANR1_1_E07.g1_A002 Anaerobic roots S... 58 1e-006
gb|CX609868.1|CX609868 ANR1_15_F01.b1_A002 Anaerobic roots ... 58 1e-006
gb|CX609949.1|CX609949 ANR1_15_F01.g1_A002 Anaerobic roots ... 58 1e-006
gb|CX610369.1|CX610369 ANR1_18_F11.b1_A002 Anaerobic roots ... 58 1e-006
gb|CX610446.1|CX610446 ANR1_18_F11.g1_A002 Anaerobic roots ... 58 1e-006
gb|CX620046.1|CX620046 GABR1_49_B08.g1_A002 GA- or brassino... 58 1e-006
gb|CX620407.1|CX620407 GABR1_51_E02.g1_A002 GA- or brassino... 58 1e-006
gb|DN551914.1|DN551914 pSPR-RT-MR-H2_C06_C282 pSPR Sorghum ... 58 1e-006
gb|CL177774.1|CL177774 104_385_10894067_116_31914_131 Sorgh... 56 4e-006
gb|CW038651.1|CW038651 104_271_10505052_115_30388 Sorghum m... 56 4e-006
gb|CW054610.1|CW054610 104_295_10516628_115_30179 Sorghum m... 56 4e-006
gb|CW067110.1|CW067110 104_314_10524068_114_30126 Sorghum m... 56 4e-006
gb|CW123167.1|CW123167 104_502_11111067_148_34685_010 Sorgh... 56 4e-006
gb|CW140343.1|CW140343 104_530_11135731_148_34916_066 Sorgh... 56 4e-006
gb|CW267419.1|CW267419 104_737_11400724_148_35294_004 Sorgh... 56 4e-006
gb|CW269038.1|CW269038 104_740_11401653_116_35318_093 Sorgh... 56 4e-006
gb|CW300424.1|CW300424 104_783_11463650_116_36248_001 Sorgh... 56 4e-006
gb|CW321645.1|CW321645 104_815_11475665_116_35947_077 Sorgh... 56 4e-006
gb|CW376699.1|CW376699 fsbb001f054l06k0 Sorghum methylation... 56 4e-006
gb|CW417495.1|CW417495 fsbb001f120i17f0 Sorghum methylation... 56 4e-006
gb|CW417496.1|CW417496 fsbb001f120i17k0 Sorghum methylation... 56 4e-006
gb|CW428522.1|CW428522 fsbb001f141e10k0 Sorghum methylation... 56 4e-006
gb|CW437579.1|CW437579 fsbb001f154m08f0 Sorghum methylation... 56 4e-006
gb|CW446822.1|CW446822 fsbb001f179k13k0 Sorghum methylation... 56 4e-006
gb|CW454420.1|CW454420 fsbb001f198n16k0 Sorghum methylation... 56 4e-006
gb|CW460183.1|CW460183 fsbb001f207e13k0 Sorghum methylation... 56 4e-006
gb|CW487412.1|CW487412 fsbb001f253e05f0 Sorghum methylation... 56 4e-006
gb|AW677546.1|AW677546 DG1_8_G07.b1_A002 Dark Grown 1 (DG1)... 56 4e-006
gb|BG048045.1|BG048045 OV1_26_H12.g1_A002 Ovary 1 (OV1) Sor... 56 4e-006
gb|BI139874.1|BI139874 IP1_46_G07.b1_A002 Immature pannicle... 56 4e-006
gb|CD220835.1|CD220835 CCC1_69_G07.g1_A007 Callus culture/c... 56 4e-006
gb|CD220954.1|CD220954 CCC1_72_B03.g1_A007 Callus culture/c... 56 4e-006
gb|CD221137.1|CD221137 CCC1_73_H10.g1_A007 Callus culture/c... 56 4e-006
gb|CD221711.1|CD221711 CCC1_70_E10.g1_A007 Callus culture/c... 56 4e-006
gb|CD223170.1|CD223170 CCC1_26_C06.g1_A007 Callus culture/c... 56 4e-006
gb|CD223182.1|CD223182 CCC1_26_F12.g1_A007 Callus culture/c... 56 4e-006
gb|CD223373.1|CD223373 CCC1_27_E07.g1_A007 Callus culture/c... 56 4e-006
gb|CD223670.1|CD223670 CCC1_29_B07.g1_A007 Callus culture/c... 56 4e-006
gb|CD224343.1|CD224343 CCC1_33_D02.g1_A007 Callus culture/c... 56 4e-006
gb|CD225200.1|CD225200 CCC1_38_F05.g1_A007 Callus culture/c... 56 4e-006
gb|CD227137.1|CD227137 CCC1_4_D07.g1_A007 Callus culture/ce... 56 4e-006
gb|CD228110.1|CD228110 CCC1_5_B06.g1_A007 Callus culture/ce... 56 4e-006
gb|CD229177.1|CD229177 CCC1_13_B09.g1_A007 Callus culture/c... 56 4e-006
gb|CD463948.1|CD463948 ETH1_47_B11.g1_A002 Ethylene-treated... 56 4e-006
gb|CN123868.1|CN123868 RHOH1_1_F04.b1_A002 Acid- and alkali... 56 4e-006
gb|CN127599.1|CN127599 RHOH1_24_A06.b1_A002 Acid- and alkal... 56 4e-006
gb|CN127679.1|CN127679 RHOH1_24_A06.g3_A002 Acid- and alkal... 56 4e-006
gb|CN136034.1|CN136034 OX1_40_H11.b1_A002 Oxidatively-stres... 56 4e-006
gb|CN136121.1|CN136121 OX1_40_H11.g1_A002 Oxidatively-stres... 56 4e-006
gb|CN149549.1|CN149549 WOUND1_63_A11.g1_A002 Wounded leaves... 56 4e-006
gb|CX607460.1|CX607460 ANR1_8_G05.g1_A002 Anaerobic roots S... 56 4e-006
gb|CX607987.1|CX607987 ANR1_32_A06.b1_A002 Anaerobic roots ... 56 4e-006
gb|CX616412.1|CX616412 GABR1_27_F04.g1_A002 GA- or brassino... 56 4e-006
gb|CW186182.1|CW186182 104_604_11166433_116_36705_013 Sorgh... 54 2e-005
gb|CW335482.1|CW335482 104_834_11483062_116_36083_089 Sorgh... 54 2e-005
gb|CW335483.1|CW335483 104_834_11483062_148_36104_089 Sorgh... 54 2e-005
gb|CW359786.1|CW359786 fsbb001f027j03k0 Sorghum methylation... 54 2e-005
gb|CD430578.1|CD430578 ETH1_19_F11.g1_A002 Ethylene-treated... 54 2e-005
gb|CF427443.1|CF427443 PH1_1_A07.g1_A002 Phosphorous-defici... 54 2e-005
gb|CX610193.1|CX610193 ANR1_17_E04.b1_A002 Anaerobic roots ... 54 2e-005
gb|CX610279.1|CX610279 ANR1_17_E04.g1_A002 Anaerobic roots ... 54 2e-005
gb|CW434092.1|CW434092 fsbb001f149j23f0 Sorghum methylation... 52 7e-005
gb|BG102852.1|BG102852 RHIZ2_34_B12.b1_A003 Rhizome2 (RHIZ2... 52 7e-005
gb|CN127847.1|CN127847 RHOH1_25_A03.g1_A002 Acid- and alkal... 52 7e-005
gb|BG558190.1|BG558190 RHIZ2_64_B11.b1_A003 Rhizome2 (RHIZ2... 50 3e-004
gb|CF427084.1|CF427084 PH1_3_D05.g1_A002 Phosphorous-defici... 50 3e-004
gb|CF429257.1|CF429257 PH1_20_E04.g1_A002 Phosphorous-defic... 50 3e-004
gb|CN125960.1|CN125960 RHOH1_14_H04.b1_A002 Acid- and alkal... 50 3e-004
gb|CN127845.1|CN127845 RHOH1_25_A01.g1_A002 Acid- and alkal... 50 3e-004
gb|CN135238.1|CN135238 OX1_31_B04.g1_A002 Oxidatively-stres... 50 3e-004
gb|CW061064.1|CW061064 104_304_10520199_114_30143 Sorghum m... 48 0.001
gb|CW189107.1|CW189107 104_610_11173790_116_37100_059 Sorgh... 48 0.001
gb|CW399257.1|CW399257 fsbb001f089a13f0 Sorghum methylation... 48 0.001
gb|CD430276.1|CD430276 ETH1_17_H06.g1_A002 Ethylene-treated... 48 0.001
gb|CD432350.1|CD432350 ETH1_29_E02.g1_A002 Ethylene-treated... 48 0.001
gb|CN133353.1|CN133353 OX1_11_E08.g1_A002 Oxidatively-stres... 48 0.001
gb|CN134237.1|CN134237 OX1_25_D04.b1_A002 Oxidatively-stres... 48 0.001
gb|CN134318.1|CN134318 OX1_25_D04.g1_A002 Oxidatively-stres... 48 0.001
gb|CN134399.1|CN134399 OX1_26_D04.b1_A002 Oxidatively-stres... 48 0.001
gb|CN134481.1|CN134481 OX1_26_D04.g1_A002 Oxidatively-stres... 48 0.001
gb|CN134577.1|CN134577 OX1_27_E09.b1_A002 Oxidatively-stres... 48 0.001
gb|CN134664.1|CN134664 OX1_27_E09.g1_A002 Oxidatively-stres... 48 0.001
gb|CX606182.1|CX606182 ANR1_1_C10.g1_A002 Anaerobic roots S... 48 0.001
gb|CX614568.1|CX614568 GABR1_14_H01.g1_A002 GA- or brassino... 48 0.001
gb|CX616580.1|CX616580 GABR1_28_F03.g1_A002 GA- or brassino... 48 0.001
gb|CW280307.1|CW280307 104_755_11407550_116_35442_055 Sorgh... 46 0.004
gb|CW280308.1|CW280308 104_755_11407550_148_35446_055 Sorgh... 46 0.004
gb|CW333675.1|CW333675 104_831_11482081_148_36044_001 Sorgh... 46 0.004
gb|BG048584.1|BG048584 OV1_14_E03.b1_A002 Ovary 1 (OV1) Sor... 46 0.004
gb|CW125506.1|CW125506 104_505_11112364_148_34712_004 Sorgh... 44 0.017
gb|CW225715.1|CW225715 104_663_11204503_148_37208_024 Sorgh... 44 0.017
gb|BE362269.1|BE362269 DG1_85_A02.b1_A002 Dark Grown 1 (DG1... 44 0.017
gb|BG556160.1|BG556160 EM1_68_E05.b1_A002 Embryo 1 (EM1) So... 44 0.017
gb|BI245810.1|BI245810 IP1_64_F11.g1_A002 Immature pannicle... 44 0.017
gb|BI245881.1|BI245881 IP1_64_F11.b1_A002 Immature pannicle... 44 0.017
gb|CD432508.1|CD432508 ETH1_30_C04.g1_A002 Ethylene-treated... 44 0.017
gb|CD462620.1|CD462620 ETH1_38_D10.g1_A002 Ethylene-treated... 44 0.017
gb|CN125086.1|CN125086 RHOH1_8_F08.g1_A002 Acid- and alkali... 44 0.017
gb|CN128214.1|CN128214 RHOH1_27_G06.g1_A002 Acid- and alkal... 44 0.017
gb|CN128815.1|CN128815 RHOH1_31_F05.g1_A002 Acid- and alkal... 44 0.017
gb|CN130578.1|CN130578 RHOH1_42_A01.g1_A002 Acid- and alkal... 44 0.017
gb|CW217959.1|CW217959 104_651_11195928_148_37066_090 Sorgh... 42 0.067
gb|CW435340.1|CW435340 fsbb001f151h04k0 Sorghum methylation... 42 0.067
gb|BG559514.1|BG559514 RHIZ2_55_F12.b1_A003 Rhizome2 (RHIZ2... 42 0.067
gb|CD219794.1|CD219794 CCC1_58_F07.g1_A007 Callus culture/c... 42 0.067
gb|CD222212.1|CD222212 CCC1_2_B01.g1_A007 Callus culture/ce... 42 0.067
gb|CL189510.1|CL189510 104_406_10902348_114_32468_034 Sorgh... 40 0.27
gb|CW155769.1|CW155769 104_558_11146316_116_36370_074 Sorgh... 40 0.27
gb|CW204077.1|CW204077 104_631_11186348_116_37095_066 Sorgh... 40 0.27
gb|CW217957.1|CW217957 104_651_11195928_116_37067_090 Sorgh... 40 0.27
gb|CW253167.1|CW253167 104_716_11224935_148_35100_054 Sorgh... 40 0.27
gb|CW314900.1|CW314900 104_805_11472073_116_35817_003 Sorgh... 40 0.27
gb|CW369802.1|CW369802 fsbb001f044g11k0 Sorghum methylation... 40 0.27
gb|CW402615.1|CW402615 fsbb001f093p05f0 Sorghum methylation... 40 0.27
gb|CW477921.1|CW477921 fsbb001f235i02k0 Sorghum methylation... 40 0.27
gb|BE357900.1|BE357900 DG1_23_H03.b1_A002 Dark Grown 1 (DG1... 40 0.27
gb|CD210199.1|CD210199 HS1_57_F11.g1_A012 Heat-shocked seed... 40 0.27
gb|CD220530.1|CD220530 CCC1_67_F12.g1_A007 Callus culture/c... 40 0.27
gb|CD233659.1|CD233659 SS1_3_G02.g1_A012 Salt-stressed seed... 40 0.27
gb|CN126050.1|CN126050 RHOH1_14_H04.g1_A002 Acid- and alkal... 40 0.27
gb|CN128978.1|CN128978 RHOH1_32_F11.g1_A002 Acid- and alkal... 40 0.27
gb|CN131820.1|CN131820 OX1_2_B01.g1_A002 Oxidatively-stress... 40 0.27
gb|CN136626.1|CN136626 OX1_44_G12.b1_A002 Oxidatively-stres... 40 0.27
gb|CN150998.1|CN150998 WOUND1_72_G04.g1_A002 Wounded leaves... 40 0.27
gb|CX613500.1|CX613500 GABR1_8_B11.g1_A002 GA- or brassinol... 40 0.27
>gb|BG049103.1|BG049103 OV1_23_C12.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 554
Score = 519 bits (262), Expect = e-145
Identities = 397/441 (90%), Gaps = 6/441 (1%)
Strand = Plus / Plus
Query: 42 gagcccgtgcactttgacctgagcgggacggcgttcggtgccatggcgaagcccggccag 101
|||||||| ||||| ||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct: 43 gagcccgtccacttcgacctcagcgggacggcgttcggtgccatggcgaaacccggccag 102
Query: 102 gccgaccagctccggaacgccggccgcctgcaagtccagtacattcgggtggcgtgcaac 161
|||||||||||||| |||| ||||||||| | ||||||||||| ||||||| ||||||||
Sbjct: 103 gccgaccagctccgaaacgtcggccgcctcccagtccagtacactcgggtgccgtgcaac 162
Query: 162 tggaacggcttggacatcgccttcagggtggacgccggctcaaacgccaactacctggcc 221
||||||||| ||||| | ||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 163 tggaacggcgtggacgtggccttcagggtggacgccggctcgaacgccaactacctggcc 222
Query: 222 atggccatcgagtacgagtccggggacggggacctgcgcgccgnggagctgaagcagagc 281
|||||||||||||||||| |||||||||||||||||||||||| |||||| |||||
Sbjct: 223 atggccatcgagtacgaggccggggacggggacctgcgcgccgtggagct---gcagaat 279
Query: 282 ggcgcggcggcgtgggcgcccatgcaacgctcctggggcgctgtgtggcagtacaagtcc 341
|||||||||||||||||||||||| | |||||||||||||| ||||||| |||| ||||
Sbjct: 280 ggcgcggcggcgtgggcgcccatggagcgctcctggggcgcggtgtggcggtaccagtcg 339
Query: 342 ggctccaccaatctgca---ggcccccctgtctgtccgcctcacctcgggctccggcagg 398
| | ||| |||||| ||||||||||||||||||||||||||| |||||||||| |
Sbjct: 340 tccggctccagtctgcaggcggcccccctgtctgtccgcctcacctccggctccggcaag 399
Query: 399 gtcctcgtcgccagcaacgtcatccccgccggatggcagcccggcagaacctaccgctcc 458
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 400 accctcgtcgccagcggcgtcatccccgccggatggcagcccggcaacacctaccgctcc 459
Query: 459 gtcgtcaacttcggaggaaac 479
|||||||||||||||||||||
Sbjct: 460 gtcgtcaacttcggaggaaac 480
>gb|BG049047.1|BG049047 OV1_22_E11.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 566
Score = 464 bits (234), Expect = e-129
Identities = 360/401 (89%), Gaps = 6/401 (1%)
Strand = Plus / Plus
Query: 82 ccatggcgaagcccggccaggccgaccagctccggaacgccggccgcctgcaagtccagt 141
|||||||||| ||||||||||||||||||||||| |||| ||||||||| | ||||||||
Sbjct: 4 ccatggcgaaacccggccaggccgaccagctccgaaacgtcggccgcctcccagtccagt 63
Query: 142 acattcgggtggcgtgcaactggaacggcttggacatcgccttcagggtggacgccggct 201
||| ||||||| ||||||||||||||||| ||||| | ||||||||||||||||||||||
Sbjct: 64 acactcgggtgccgtgcaactggaacggcgtggacgtggccttcagggtggacgccggct 123
Query: 202 caaacgccaactacctggccatggccatcgagtacgagtccggggacggggacctgcgcg 261
| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 124 cgaacgccaactacctggccatggccatcgagtacgaggccggggacggggacctgcgcg 183
Query: 262 ccgnggagctgaagcagagcggcgcggcggcgtgggcgcccatgcaacgctcctggggcg 321
||| |||||| ||||| |||||||||||||||||||||||| | |||||||||||||
Sbjct: 184 ccgtggagct---gcagaatggcgcggcggcgtgggcgcccatggagcgctcctggggcg 240
Query: 322 ctgtgtggcagtacaagtccggctccaccaatctgca---ggcccccctgtctgtccgcc 378
| ||||||| |||| |||| | | ||| |||||| ||||||||||||||||||||
Sbjct: 241 cggtgtggcggtaccagtcgtccggctccagtctgcaggcggcccccctgtctgtccgcc 300
Query: 379 tcacctcgggctccggcagggtcctcgtcgccagcaacgtcatccccgccggatggcagc 438
||||||| |||||||||| | ||||||||||||| |||||||||||||||||||||||
Sbjct: 301 tcacctccggctccggcaagaccctcgtcgccagcggcgtcatccccgccggatggcagc 360
Query: 439 ccggcagaacctaccgctccgtcgtcaacttcggaggaaac 479
|||||| |||||||||||||||||||||||||||||||||
Sbjct: 361 ccggcaacacctaccgctccgtcgtcaacttcggaggaaac 401
>gb|BG049025.1|BG049025 OV1_22_C07.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 386
Score = 402 bits (203), Expect = e-110
Identities = 337/380 (88%), Gaps = 14/380 (3%)
Strand = Plus / Plus
Query: 108 cagctccggaacgccggccgcctgcaagtccagtacattcgggtggcgtgcaactggaac 167
|||||||| |||| ||||||||| | ||||||||||| ||||||| ||||||||||||||
Sbjct: 1 cagctccgaaacgtcggccgcctcccagtccagtacactcgggtgccgtgcaactggaac 60
Query: 168 ggcttggacatcgccttcagggtggacgccggctcaaacgccaactacctggccatggcc 227
||| ||||| | ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 61 ggcgtggacgtggccttcagggtggacgccggctcgaacgccaactacctggccatggcc 120
Query: 228 atcgagtacgagtccggggacggggacctgcgcgccgnggagctgaagcagagcggcgcg 287
|||||||||||| |||||||||||||||||||||||| |||||| ||||| |||| |
Sbjct: 121 atcgagtacgaggccggggacggggacctgcgcgccgtggagct---gcagaatggcgag 177
Query: 288 gcggcgtgggcgcccatgcaacgctcctggggcgctgtgtggcagtacaa-----gtccg 342
|||||||||||||||||| | |||||||||||||| ||||||| |||| | |||||
Sbjct: 178 gcggcgtgggcgcccatggagcgctcctggggcgcggtgtggcggtaccagtagtgtccg 237
Query: 343 gctccaccaatctgca---ggcccccctgtctgtccgcctcacctcgggctccggcaggg 399
||| ||| |||||| ||||||||||||||||||||||||||| |||||||||| |
Sbjct: 238 gct---ccagtctgcaggcggcccccctgtctgtccgcctcacctccggctccggcaaga 294
Query: 400 tcctcgtcgccagcaacgtcatccccgccggatggcagcccggcagaacctaccgctccg 459
||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 295 ccctcgtcgccagcggcgtcatccccgccggatggcagcccggcaacacctaccgctccg 354
Query: 460 tcgtcaacttcggaggaaac 479
||||||||||||||||||||
Sbjct: 355 tcgtcaacttcggaggaaac 374
>gb|BZ339450.1|BZ339450 ic32c10.b1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone ic32c10 5', DNA sequence
Length = 683
Score = 381 bits (192), Expect = e-104
Identities = 300/335 (89%), Gaps = 6/335 (1%)
Strand = Plus / Plus
Query: 148 gggtggcgtgcaactggaacggcttggacatcgccttcagggtggacgccggctcaaacg 207
||||| ||||||||||||||||| ||||| | ||||||||||||||||||||||| ||||
Sbjct: 61 gggtgccgtgcaactggaacggcgtggacgtggccttcagggtggacgccggctcgaacg 120
Query: 208 ccaactacctggccatggccatcgagtacgagtccggggacggggacctgcgcgccgngg 267
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct: 121 ccaactacctggccatggccatcgagtacgaggccggggacggggacctgcgcgccgtgg 180
Query: 268 agctgaagcagagcggcgcggcggcgtgggcgcccatgcaacgctcctggggcgctgtgt 327
|||| ||||| |||||||||||||||||||||||| | |||||||||||||| ||||
Sbjct: 181 agct---gcagaatggcgcggcggcgtgggcgcccatggagcgctcctggggcgcggtgt 237
Query: 328 ggcagtacaagtccggctccaccaatctgca---ggcccccctgtctgtccgcctcacct 384
||| |||| |||| | | ||| |||||| ||||||||||||||||||||||||||
Sbjct: 238 ggcggtaccagtcgtccggctccagtctgcaggcggcccccctgtctgtccgcctcacct 297
Query: 385 cgggctccggcagggtcctcgtcgccagcaacgtcatccccgccggatggcagcccggca 444
| |||||||||| | ||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 298 ccggctccggcaagaccctcgtcgccagcggcgtcatccccgccggatggcagcccggca 357
Query: 445 gaacctaccgctccgtcgtcaacttcggaggaaac 479
|||||||||||||||||||||||||||||||||
Sbjct: 358 acacctaccgctccgtcgtcaacttcggaggaaac 392
>gb|CW241492.1|CW241492 104_700_11218800_148_37543_086 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11218800, DNA
sequence
Length = 644
Score = 381 bits (192), Expect = e-104
Identities = 300/335 (89%), Gaps = 6/335 (1%)
Strand = Plus / Minus
Query: 148 gggtggcgtgcaactggaacggcttggacatcgccttcagggtggacgccggctcaaacg 207
||||| ||||||||||||||||| ||||| | ||||||||||||||||||||||| ||||
Sbjct: 366 gggtgccgtgcaactggaacggcgtggacgtggccttcagggtggacgccggctcgaacg 307
Query: 208 ccaactacctggccatggccatcgagtacgagtccggggacggggacctgcgcgccgngg 267
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct: 306 ccaactacctggccatggccatcgagtacgaggccggggacggggacctgcgcgccgtgg 247
Query: 268 agctgaagcagagcggcgcggcggcgtgggcgcccatgcaacgctcctggggcgctgtgt 327
|||| ||||| |||||||||||||||||||||||| | |||||||||||||| ||||
Sbjct: 246 agct---gcagaatggcgcggcggcgtgggcgcccatggagcgctcctggggcgcggtgt 190
Query: 328 ggcagtacaagtccggctccaccaatctgca---ggcccccctgtctgtccgcctcacct 384
||| |||| |||| | | ||| |||||| ||||||||||||||||||||||||||
Sbjct: 189 ggcggtaccagtcgtccggctccagtctgcaggcggcccccctgtctgtccgcctcacct 130
Query: 385 cgggctccggcagggtcctcgtcgccagcaacgtcatccccgccggatggcagcccggca 444
| |||||||||| | ||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 129 ccggctccggcaagaccctcgtcgccagcggcgtcatccccgccggatggcagcccggca 70
Query: 445 gaacctaccgctccgtcgtcaacttcggaggaaac 479
|||||||||||||||||||||||||||||||||
Sbjct: 69 acacctaccgctccgtcgtcaacttcggaggaaac 35
Score = 143 bits (72), Expect = 2e-032
Identities = 99/108 (91%)
Strand = Plus / Minus
Query: 42 gagcccgtgcactttgacctgagcgggacggcgttcggtgccatggcgaagcccggccag 101
|||||||| ||||| ||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct: 588 gagcccgtccacttcgacctcagcgggacggcgttcggtgccatggcgaaacccggccag 529
Query: 102 gccgaccagctccggaacgccggccgcctgcaagtccagtacattcgg 149
|||||||||||||| |||| ||||||||| | ||||||||||| ||||
Sbjct: 528 gccgaccagctccgaaacgtcggccgcctcccagtccagtacactcgg 481
>gb|BG048752.1|BG048752 OV1_22_E11.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 405
Score = 377 bits (190), Expect = e-103
Identities = 263/287 (91%), Gaps = 3/287 (1%)
Strand = Plus / Plus
Query: 42 gagcccgtgcactttgacctgagcgggacggcgttcggtgccatggcgaagcccggccag 101
|||||||| ||||| ||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct: 122 gagcccgtccacttcgacctcagcgggacggcgttcggtgccatggcgaaacccggccag 181
Query: 102 gccgaccagctccggaacgccggccgcctgcaagtccagtacattcgggtggcgtgcaac 161
|||||||||||||| |||| ||||||||| | ||||||||||| ||||||| ||||||||
Sbjct: 182 gccgaccagctccgaaacgtcggccgcctcccagtccagtacactcgggtgccgtgcaac 241
Query: 162 tggaacggcttggacatcgccttcagggtggacgccggctcaaacgccaactacctggcc 221
||||||||| ||||| | ||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 242 tggaacggcgtggacgtggccttcagggtggacgccggctcgaacgccaactacctggcc 301
Query: 222 atggccatcgagtacgagtccggggacggggacctgcgcgccgnggagctgaagcagagc 281
|||||||||||||||||| |||||||||||||||||||||||| |||||| |||||
Sbjct: 302 atggccatcgagtacgaggccggggacggggacctgcgcgccgtggagct---gcagaat 358
Query: 282 ggcgcggcggcgtgggcgcccatgcaacgctcctggggcgctgtgtg 328
|||||||||||||||||||||||| | |||||||||||||| |||||
Sbjct: 359 ggcgcggcggcgtgggcgcccatggagcgctcctggggcgcggtgtg 405
>gb|CW233768.1|CW233768 104_687_11213622_116_37380_027 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11213622, DNA
sequence
Length = 712
Score = 357 bits (180), Expect = 9e-097
Identities = 297/335 (88%), Gaps = 6/335 (1%)
Strand = Plus / Minus
Query: 148 gggtggcgtgcaactggaacggcttggacatcgccttcagggtggacgccggctcaaacg 207
||||| ||||||||||||||||| ||||| | ||||||||||||||||||||||| ||||
Sbjct: 524 gggtgccgtgcaactggaacggcgtggacgtggccttcagggtggacgccggctcgaacg 465
Query: 208 ccaactacctggccatggccatcgagtacgagtccggggacggggacctgcgcgccgngg 267
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct: 464 ccaactacctggccatggccatcgagtacgaggccggggacggggacctgcgcgccgtgg 405
Query: 268 agctgaagcagagcggcgcggcggcgtgggcgcccatgcaacgctcctggggcgctgtgt 327
|||| ||| | |||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct: 404 agct---gcaaaatggcgcggcggcgtgggcgcccatggaacgctcctggggcgcggtgt 348
Query: 328 ggcagtacaagtccggctccaccaatctgca---ggcccccctgtctgtccgcctcacct 384
||| ||| |||| | | ||| |||||| ||||||||||||||||||||||||||
Sbjct: 347 ggcgctaccagtcgtccggctccagtctgcaggcggcccccctgtctgtccgcctcacct 288
Query: 385 cgggctccggcagggtcctcgtcgccagcaacgtcatccccgccggatggcagcccggca 444
| |||||||||| | ||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 287 ccggctccggcaagaccctcgtcgccagcggcgtcatccccgccggatggcagcccggca 228
Query: 445 gaacctaccgctccgtcgtcaacttcggaggaaac 479
|||||||||| |||||||||||||||| |||||
Sbjct: 227 acacctaccgctgcgtcgtcaacttcggacgaaac 193
Score = 75.8 bits (38), Expect = 5e-012
Identities = 67/74 (90%), Gaps = 2/74 (2%)
Strand = Plus / Minus
Query: 72 gcgttcggtgccatggcgaagcccggccaggccgacc-agctccggaacgccggccgcct 130
|||||||||||||||||||| ||||||||| |||||| ||||||| |||| |||||||||
Sbjct: 712 gcgttcggtgccatggcgaaacccggccag-ccgacccagctccgaaacgtcggccgcct 654
Query: 131 gcaagtccagtaca 144
| |||||||||||
Sbjct: 653 cccagtccagtaca 640
>gb|CW241491.1|CW241491 104_700_11218800_116_37544_086 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11218800, DNA
sequence
Length = 641
Score = 285 bits (144), Expect = 3e-075
Identities = 246/279 (88%), Gaps = 6/279 (2%)
Strand = Plus / Plus
Query: 148 gggtggcgtgcaactggaacggcttggacatcgccttcagggtggacgccggctcaaacg 207
||||| ||||||||||||||||| ||||| | ||||||||||||||||||||||| ||||
Sbjct: 366 gggtgccgtgcaactggaacggcgtggacgtggccttcagggtggacgccggctcgaacg 425
Query: 208 ccaactacctggccatggccatcgagtacgagtccggggacggggacctgcgcgccgngg 267
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct: 426 ccaactacctggccatggccatcgagtacgaggccggggacggggacctgcgcgccgtgg 485
Query: 268 agctgaagcagagcggcgcggcggcgtgggcgcccatgcaacgctcctggggcgctgtgt 327
|||| ||||| |||||||||||||||||||||||| | |||||||||||||| ||||
Sbjct: 486 agct---gcagaatggcgcggcggcgtgggcgcccatggagcgctcctggggcgcggtgt 542
Query: 328 ggcagtacaagtccggctccaccaatctgca---ggcccccctgtctgtccgcctcacct 384
||| |||| |||| | | ||| |||||| ||||||||||||||||||||||||||
Sbjct: 543 ggcggtaccagtcgtccggctccagtctgcaggcggcccccctgtctgtccgcctcacct 602
Query: 385 cgggctccggcagggtcctcgtcgccagcaacgtcatcc 423
| |||||||||| | ||||||||||||| ||||||||
Sbjct: 603 ccggctccggcaagaccctcgtcgccagcggcgtcatcc 641
Score = 143 bits (72), Expect = 2e-032
Identities = 99/108 (91%)
Strand = Plus / Plus
Query: 42 gagcccgtgcactttgacctgagcgggacggcgttcggtgccatggcgaagcccggccag 101
|||||||| ||||| ||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct: 144 gagcccgtccacttcgacctcagcgggacggcgttcggtgccatggcgaaacccggccag 203
Query: 102 gccgaccagctccggaacgccggccgcctgcaagtccagtacattcgg 149
|||||||||||||| |||| ||||||||| | ||||||||||| ||||
Sbjct: 204 gccgaccagctccgaaacgtcggccgcctcccagtccagtacactcgg 251
>gb|BG047628.1|BG047628 OV1_26_C01.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 436
Score = 274 bits (138), Expect = 1e-071
Identities = 234/265 (88%), Gaps = 6/265 (2%)
Strand = Plus / Plus
Query: 218 ggccatggccatcgagtacgagtccggggacggggacctgcgcgccgnggagctgaagca 277
|||||||||||||||||||||| |||||||||||||||||||||||| ||||||| ||
Sbjct: 8 ggccatggccatcgagtacgaggccggggacggggacctgcgcgccgtggagctg---ca 64
Query: 278 gagcggcgcggcggcgtgggcgcccatgcaacgctcctggggcgctgtgtggcagtacaa 337
|| |||||||||||||||||||||||| | |||||||||||||| ||||||| |||| |
Sbjct: 65 gaatggcgcggcggcgtgggcgcccatggagcgctcctggggcgcggtgtggcggtacca 124
Query: 338 gtccggctccaccaatctgcaggc---ccccctgtctgtccgcctcacctcgggctccgg 394
||| | | ||| ||||||||| |||||||||||||||||||| ||| ||||||||
Sbjct: 125 gtcgtccggctccagtctgcaggcggcccccctgtctgtccgcctcaactccggctccgg 184
Query: 395 cagggtcctcgtcgccagcaacgtcatccccgccggatggcagcccggcagaacctaccg 454
|| | ||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct: 185 caagaccctcgtcgccagcggcgtcatccccgccggatggcagcccggcaacacctaccg 244
Query: 455 ctccgtcgtcaacttcggaggaaac 479
|||||||||||||||||||||||||
Sbjct: 245 ctccgtcgtcaacttcggaggaaac 269
>gb|CW233769.1|CW233769 104_687_11213622_148_37379_027 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11213622, DNA
sequence
Length = 710
Score = 218 bits (110), Expect = 5e-055
Identities = 156/171 (91%), Gaps = 3/171 (1%)
Strand = Plus / Plus
Query: 148 gggtggcgtgcaactggaacggcttggacatcgccttcagggtggacgccggctcaaacg 207
||||| ||||||||||||||||| ||||| | ||||||||||||||||||||||| ||||
Sbjct: 543 gggtgccgtgcaactggaacggcgtggacgtggccttcagggtggacgccggctcgaacg 602
Query: 208 ccaactacctggccatggccatcgagtacgagtccggggacggggacctgcgcgccgngg 267
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct: 603 ccaactacctggccatggccatcgagtacgaggccggggacggggacctgcgcgccgtga 662
Query: 268 agctgaagcagagcggcgcggcggcgtgggcgcccatgcaacgctcctggg 318
|||| ||| | |||||||||||||||||||||||| ||||||||||||
Sbjct: 663 agct---gcaaaatggcgcggcggcgtgggcgcccatggaacgctcctggg 710
Score = 141 bits (71), Expect = 1e-031
Identities = 95/103 (92%)
Strand = Plus / Plus
Query: 42 gagcccgtgcactttgacctgagcgggacggcgttcggtgccatggcgaagcccggccag 101
|||||||| ||||| ||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct: 325 gagcccgtccacttcgacctcagcgggacggcgttcggtgccatggcgaaacccggccag 384
Query: 102 gccgaccagctccggaacgccggccgcctgcaagtccagtaca 144
|||||||||||||| |||| ||||||||| | |||||||||||
Sbjct: 385 gccgaccagctccgaaacgtcggccgcctcccagtccagtaca 427
>gb|CW369801.1|CW369801 fsbb001f044g11f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f044g11, DNA
sequence
Length = 743
Score = 170 bits (86), Expect = 1e-040
Identities = 110/118 (93%)
Strand = Plus / Plus
Query: 362 ccccctgtctgtccgcctcacctcgggctccggcagggtcctcgtcgccagcaacgtcat 421
|||||||||||||||||||||||| |||||||||| | ||||||||||||| ||||||
Sbjct: 1 ccccctgtctgtccgcctcacctccggctccggcaagaccctcgtcgccagcggcgtcat 60
Query: 422 ccccgccggatggcagcccggcagaacctaccgctccgtcgtcaacttcggaggaaac 479
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 61 ccccgccggatggcagcccggcaacacctaccgctccgtcgtcaacttcggaggaaac 118
>gb|BG048512.1|BG048512 OV1_14_E03.g2_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 547
Score = 170 bits (86), Expect = 1e-040
Identities = 273/335 (81%), Gaps = 3/335 (0%)
Strand = Plus / Plus
Query: 136 tccagtacattcgggtggcgtgcaactggaacggcttggacatcgccttcagggtggacg 195
||||||||| ||||||| |||||||||||||||| |||||||||| |||| ||||||||
Sbjct: 20 tccagtacactcgggtgccgtgcaactggaacgggatggacatcgcgttcaaggtggacg 79
Query: 196 ccggctcaaacgccaactacctggccatggccatcgagtacgagtccggggacggggacc 255
||| || ||||| |||||| || | || ||||||||||||||||| ||||| || |
Sbjct: 80 gcgggtcgaacgcgaactacttgccggtgctgatcgagtacgagtccggcgacggcgagc 139
Query: 256 tgcgcgccgnggagctgaagcagagcggcgcggcggcgtgggcgcccatgcaacgctcct 315
|| | ||| |||||| | |||| |||||| |||||||||||||| ||||| || || |
Sbjct: 140 tgaggtccgtggagctcatgcagcgcggcggcgcggcgtgggcgccgatgcagcggtcgt 199
Query: 316 ggggcgctgtgtggcagtacaagtccggctccaccaatctgcaggcccccctgtctgtcc 375
||||||| |||||| |||||| |||||| || || |||||||| ||| | || ||||
Sbjct: 200 ggggcgccgtgtggaggtacaactccggcgccgcc---ctgcaggcgcccttctccgtcc 256
Query: 376 gcctcacctcgggctccggcagggtcctcgtcgccagcaacgtcatccccgccggatggc 435
|||||||||| |||||||||||| |||| |||| ||||||||||||||| || |||
Sbjct: 257 gcctcacctccggctccggcaggacggtcgtggccaccaacgtcatccccgcggggtggt 316
Query: 436 agcccggcagaacctaccgctccgtcgtcaacttc 470
||||||| || |||||||| ||||||||||||
Sbjct: 317 cgcccggcgccacgtaccgctcggtcgtcaacttc 351
>gb|BH245862.1|BH245862 pSB1435.2 S. bicolor BTx623 PstI-digested total genomic DNA library
Sorghum bicolor genomic clone pSB1435 similar to
putative beta-expansin (pollen allergen) (AAD32826), DNA
sequence
Length = 384
Score = 143 bits (72), Expect = 2e-032
Identities = 99/108 (91%)
Strand = Plus / Minus
Query: 42 gagcccgtgcactttgacctgagcgggacggcgttcggtgccatggcgaagcccggccag 101
|||||||| ||||| ||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct: 223 gagcccgtccacttcgacctcagcgggacggcgttcggtgccatggcgaaacccggccag 164
Query: 102 gccgaccagctccggaacgccggccgcctgcaagtccagtacattcgg 149
|||||||||||||| |||| ||||||||| | ||||||||||| ||||
Sbjct: 163 gccgaccagctccgaaacgtcggccgcctcccagtccagtacactcgg 116
>gb|CW377780.1|CW377780 fsbb001f056d24k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f056d24, DNA
sequence
Length = 751
Score = 143 bits (72), Expect = 2e-032
Identities = 99/108 (91%)
Strand = Plus / Minus
Query: 42 gagcccgtgcactttgacctgagcgggacggcgttcggtgccatggcgaagcccggccag 101
|||||||| ||||| ||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct: 124 gagcccgtccacttcgacctcagcgggacggcgttcggtgccatggcgaaacccggccag 65
Query: 102 gccgaccagctccggaacgccggccgcctgcaagtccagtacattcgg 149
|||||||||||||| |||| ||||||||| | ||||||||||| ||||
Sbjct: 64 gccgaccagctccgaaacgtcggccgcctcccagtccagtacactcgg 17
>gb|CW445527.1|CW445527 fsbb001f170l16k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f170l16, DNA
sequence
Length = 663
Score = 143 bits (72), Expect = 2e-032
Identities = 99/108 (91%)
Strand = Plus / Minus
Query: 42 gagcccgtgcactttgacctgagcgggacggcgttcggtgccatggcgaagcccggccag 101
|||||||| ||||| ||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct: 169 gagcccgtccacttcgacctcagcgggacggcgttcggtgccatggcgaaacccggccag 110
Query: 102 gccgaccagctccggaacgccggccgcctgcaagtccagtacattcgg 149
|||||||||||||| |||| ||||||||| | ||||||||||| ||||
Sbjct: 109 gccgaccagctccgaaacgtcggccgcctcccagtccagtacactcgg 62
>gb|BG048811.1|BG048811 OV1_23_C12.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 483
Score = 123 bits (62), Expect = 2e-026
Identities = 80/86 (93%)
Strand = Plus / Plus
Query: 42 gagcccgtgcactttgacctgagcgggacggcgttcggtgccatggcgaagcccggccag 101
|||||||| ||||| ||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct: 398 gagcccgtccacttcgacctcagcgggacggcgttcggtgccatggcgaaacccggccag 457
Query: 102 gccgaccagctccggaacgccggccg 127
|||||||||||||| |||| ||||||
Sbjct: 458 gccgaccagctccgaaacgtcggccg 483
>gb|CW268309.1|CW268309 104_739_11401215_148_35310_064 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11401215, DNA
sequence
Length = 713
Score = 117 bits (59), Expect = 1e-024
Identities = 77/83 (92%)
Strand = Plus / Plus
Query: 42 gagcccgtgcactttgacctgagcgggacggcgttcggtgccatggcgaagcccggccag 101
|||||||||||||| ||||||||||| ||||||||||| ||| |||||||||||||||||
Sbjct: 351 gagcccgtgcacttcgacctgagcggcacggcgttcggagccctggcgaagcccggccag 410
Query: 102 gccgaccagctccggaacgccgg 124
|||||||||||||| | ||||||
Sbjct: 411 gccgaccagctccgcagcgccgg 433
>gb|BG048731.1|BG048731 OV1_22_C07.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 329
Score = 117 bits (59), Expect = 1e-024
Identities = 74/79 (93%)
Strand = Plus / Plus
Query: 42 gagcccgtgcactttgacctgagcgggacggcgttcggtgccatggcgaagcccggccag 101
|||||||| ||||| ||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct: 251 gagcccgtccacttcgacctcagcgggacggcgttcggtgccatggcgaaacccggccag 310
Query: 102 gccgaccagctccggaacg 120
|||||||||||||| ||||
Sbjct: 311 gccgaccagctccgaaacg 329
>gb|CD219865.1|CD219865 CCC1_59_D05.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_59_D05_A007 5', mRNA sequence
Length = 596
Score = 117 bits (59), Expect = 1e-024
Identities = 77/83 (92%)
Strand = Plus / Plus
Query: 42 gagcccgtgcactttgacctgagcgggacggcgttcggtgccatggcgaagcccggccag 101
|||||||||||||| ||||||||||| ||||||||||| ||| |||||||||||||||||
Sbjct: 426 gagcccgtgcacttcgacctgagcggcacggcgttcggagccctggcgaagcccggccag 485
Query: 102 gccgaccagctccggaacgccgg 124
|||||||||||||| | ||||||
Sbjct: 486 gccgaccagctccgcagcgccgg 508
>gb|CW396909.1|CW396909 fsbb001f085j02k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f085j02, DNA
sequence
Length = 598
Score = 103 bits (52), Expect = 2e-020
Identities = 170/209 (81%), Gaps = 3/209 (1%)
Strand = Plus / Plus
Query: 262 ccgnggagctgaagcagagcggcgcggcggcgtgggcgcccatgcaacgctcctggggcg 321
||| |||||| | |||| |||||| |||||||||||||| ||||| || || |||||||
Sbjct: 15 ccgtggagctcatgcagcgcggcggcgcggcgtgggcgccgatgcagcggtcgtggggcg 74
Query: 322 ctgtgtggcagtacaagtccggctccaccaatctgcaggcccccctgtctgtccgcctca 381
| |||||| |||||| |||||| || || |||||||| ||| | || ||||||||||
Sbjct: 75 ccgtgtggaggtacaactccggcgccgcc---ctgcaggcgcccttctccgtccgcctca 131
Query: 382 cctcgggctccggcagggtcctcgtcgccagcaacgtcatccccgccggatggcagcccg 441
|||| |||||||||||| |||| |||| ||||||||||||||| || ||| |||||
Sbjct: 132 cctccggctccggcaggacggtcgtggccaccaacgtcatccccgcggggtggtcgcccg 191
Query: 442 gcagaacctaccgctccgtcgtcaacttc 470
|| || |||||||| ||||||||||||
Sbjct: 192 gcgccacgtaccgctcggtcgtcaacttc 220
>gb|BG158255.1|BG158255 EM1_9_D12.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 486
Score = 93.7 bits (47), Expect = 2e-017
Identities = 59/63 (93%)
Strand = Plus / Plus
Query: 42 gagcccgtgcactttgacctgagcgggacggcgttcggtgccatggcgaagcccggccag 101
|||||||||||||| ||||||||||| ||||||||||| ||| |||||||||||||||||
Sbjct: 424 gagcccgtgcacttcgacctgagcggcacggcgttcggagccctggcgaagcccggccag 483
Query: 102 gcc 104
|||
Sbjct: 484 gcc 486
>gb|CD219585.1|CD219585 CCC1_57_C04.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_57_C04_A007 5', mRNA sequence
Length = 660
Score = 91.7 bits (46), Expect = 8e-017
Identities = 97/114 (85%)
Strand = Plus / Plus
Query: 51 cactttgacctgagcgggacggcgttcggtgccatggcgaagcccggccaggccgaccag 110
||||| ||| ||||||| ||||| ||||| ||||||||||| ||||||||||||||| ||
Sbjct: 480 cacttcgacatgagcggaacggcattcggcgccatggcgaaccccggccaggccgacaag 539
Query: 111 ctccggaacgccggccgcctgcaagtccagtacattcgggtggcgtgcaactgg 164
|| || ||||||||| ||| ||| ||||||||| || ||| |||||||||||
Sbjct: 540 ctgcgcaacgccggcgtcctccaaatccagtacacccgcgtgccgtgcaactgg 593
>gb|CD226852.1|CD226852 CCC1_48_E12.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_48_E12_A007 5', mRNA sequence
Length = 627
Score = 91.7 bits (46), Expect = 8e-017
Identities = 97/114 (85%)
Strand = Plus / Plus
Query: 51 cactttgacctgagcgggacggcgttcggtgccatggcgaagcccggccaggccgaccag 110
||||| ||| ||||||| ||||| ||||| ||||||||||| ||||||||||||||| ||
Sbjct: 482 cacttcgacatgagcggaacggcattcggcgccatggcgaaccccggccaggccgacaag 541
Query: 111 ctccggaacgccggccgcctgcaagtccagtacattcgggtggcgtgcaactgg 164
|| || ||||||||| ||| ||| ||||||||| || ||| |||||||||||
Sbjct: 542 ctgcgcaacgccggcgtcctccaaatccagtacacccgcgtgccgtgcaactgg 595
>gb|CW134146.1|CW134146 104_518_11117151_116_34820_060 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11117151, DNA
sequence
Length = 437
Score = 89.7 bits (45), Expect = 3e-016
Identities = 131/160 (81%)
Strand = Plus / Plus
Query: 148 gggtggcgtgcaactggaacggcttggacatcgccttcagggtggacgccggctcaaacg 207
||||| |||||||||||||||| |||||||||| |||| |||||||| ||| || ||||
Sbjct: 264 gggtgccgtgcaactggaacgggatggacatcgcgttcaaggtggacggcgggtcgaacg 323
Query: 208 ccaactacctggccatggccatcgagtacgagtccggggacggggacctgcgcgccgngg 267
| |||||| |||| || ||||||||||||||||| ||| | || ||| | ||| ||
Sbjct: 324 cgaactacttggcggtgctgatcgagtacgagtccggcgacagcgagctgaggtccgtgg 383
Query: 268 agctgaagcagagcggcgcggcggcgtgggcgcccatgca 307
|||| | |||| |||||| |||||||||||||| |||||
Sbjct: 384 agctcatgcagcgcggcggcgcggcgtgggcgccgatgca 423
>gb|CW433265.1|CW433265 fsbb001f148g13f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f148g13, DNA
sequence
Length = 768
Score = 87.7 bits (44), Expect = 1e-015
Identities = 83/96 (86%)
Strand = Plus / Minus
Query: 373 tccgcctcacctcgggctccggcagggtcctcgtcgccagcaacgtcatccccgccggat 432
||||||||||||| | |||||||| ||| |||||||||| |||||||||||||||||| |
Sbjct: 139 tccgcctcacctccgactccggcaaggtgctcgtcgccaacaacgtcatccccgccggct 80
Query: 433 ggcagcccggcagaacctaccgctccgtcgtcaact 468
|| | |||||| ||| ||||||||| | |||||||
Sbjct: 79 ggaaccccggcgcaacgtaccgctccctggtcaact 44
Score = 40.1 bits (20), Expect = 0.27
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 175 acatcgccttcagggtggac 194
||||||||||||||||||||
Sbjct: 340 acatcgccttcagggtggac 321
>gb|BF656823.1|BF656823 OV2_23_D07.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 552
Score = 87.7 bits (44), Expect = 1e-015
Identities = 83/96 (86%)
Strand = Plus / Plus
Query: 373 tccgcctcacctcgggctccggcagggtcctcgtcgccagcaacgtcatccccgccggat 432
||||||||||||| | |||||||| ||| |||||||||| |||||||||||||||||| |
Sbjct: 78 tccgcctcacctccgactccggcaaggtgctcgtcgccaacaacgtcatccccgccggct 137
Query: 433 ggcagcccggcagaacctaccgctccgtcgtcaact 468
|| | |||||| ||| ||||||||| | |||||||
Sbjct: 138 ggaaccccggcgcaacgtaccgctccctggtcaact 173
>gb|CX613415.1|CX613415 GABR1_8_B11.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_8_B11_A002 3', mRNA sequence
Length = 779
Score = 87.7 bits (44), Expect = 1e-015
Identities = 83/96 (86%)
Strand = Plus / Plus
Query: 373 tccgcctcacctcgggctccggcagggtcctcgtcgccagcaacgtcatccccgccggat 432
||||||||||||| | |||||||| ||| |||||||||| |||||||||||||||||| |
Sbjct: 247 tccgcctcacctccgactccggcaaggtgctcgtcgccaacaacgtcatccccgccggct 306
Query: 433 ggcagcccggcagaacctaccgctccgtcgtcaact 468
|| | |||||| ||| ||||||||| | |||||||
Sbjct: 307 ggaaccccggcgcaacgtaccgctccctggtcaact 342
Score = 40.1 bits (20), Expect = 0.27
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 175 acatcgccttcagggtggac 194
||||||||||||||||||||
Sbjct: 46 acatcgccttcagggtggac 65
>gb|DN552513.1|DN552513 pSHR-RT-A-H1_H09_C105 pSHR Sorghum halepense cDNA, mRNA sequence
Length = 1256
Score = 87.7 bits (44), Expect = 1e-015
Identities = 83/96 (86%)
Strand = Plus / Minus
Query: 373 tccgcctcacctcgggctccggcagggtcctcgtcgccagcaacgtcatccccgccggat 432
||||||||||||| | |||||||| ||| |||||||||| |||||||||||||||||| |
Sbjct: 431 tccgcctcacctccgactccggcaaggtgctcgtcgccaacaacgtcatccccgccggct 372
Query: 433 ggcagcccggcagaacctaccgctccgtcgtcaact 468
|| | |||||| ||| ||||||||| | |||||||
Sbjct: 371 ggaaccccggcgcaacgtaccgctccctggtcaact 336
>gb|CD231800.1|CD231800 SS1_30_D03.b1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_30_D03_A012 3', mRNA sequence
Length = 604
Score = 79.8 bits (40), Expect = 3e-013
Identities = 82/96 (85%)
Strand = Plus / Plus
Query: 373 tccgcctcacctcgggctccggcagggtcctcgtcgccagcaacgtcatccccgccggat 432
||||||||||||| | |||||||| ||| |||||||||| |||||||||||||||||| |
Sbjct: 76 tccgcctcacctccgactccggcaaggtgctcgtcgccaacaacgtcatccccgccggct 135
Query: 433 ggcagcccggcagaacctaccgctccgtcgtcaact 468
|| | |||||| || ||||||||| | |||||||
Sbjct: 136 ggaaccccggcgccacgtaccgctccttggtcaact 171
>gb|BZ349112.1|BZ349112 hq87c03.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone hq87c03 5', DNA sequence
Length = 436
Score = 77.8 bits (39), Expect = 1e-012
Identities = 63/71 (88%)
Strand = Plus / Plus
Query: 373 tccgcctcacctcgggctccggcagggtcctcgtcgccagcaacgtcatccccgccggat 432
||||||||||||| | |||||||| ||| |||||||||| |||||||||||||||||| |
Sbjct: 322 tccgcctcacctccgactccggcaaggtgctcgtcgccaacaacgtcatccccgccggct 381
Query: 433 ggcagcccggc 443
|| | ||||||
Sbjct: 382 ggaaccccggc 392
Score = 40.1 bits (20), Expect = 0.27
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 175 acatcgccttcagggtggac 194
||||||||||||||||||||
Sbjct: 121 acatcgccttcagggtggac 140
>gb|CL165129.1|CL165129 104_359_10808375_114_31816_359 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10808375, DNA
sequence
Length = 758
Score = 77.8 bits (39), Expect = 1e-012
Identities = 63/71 (88%)
Strand = Plus / Plus
Query: 373 tccgcctcacctcgggctccggcagggtcctcgtcgccagcaacgtcatccccgccggat 432
||||||||||||| | |||||||| ||| |||||||||| |||||||||||||||||| |
Sbjct: 512 tccgcctcacctccgactccggcaaggtgctcgtcgccaacaacgtcatccccgccggct 571
Query: 433 ggcagcccggc 443
|| | ||||||
Sbjct: 572 ggaaccccggc 582
Score = 40.1 bits (20), Expect = 0.27
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 175 acatcgccttcagggtggac 194
||||||||||||||||||||
Sbjct: 311 acatcgccttcagggtggac 330
Score = 40.1 bits (20), Expect = 0.27
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 81 gccatggcgaagcccggccaggccgaccagct 112
|||||||||||||||||| ||||||| ||||
Sbjct: 139 gccatggcgaagcccggcatggccgacaagct 170
>gb|CW062333.1|CW062333 104_307_10521280_5_30083 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10521280, DNA
sequence
Length = 399
Score = 77.8 bits (39), Expect = 1e-012
Identities = 87/103 (84%)
Strand = Plus / Plus
Query: 148 gggtggcgtgcaactggaacggcttggacatcgccttcagggtggacgccggctcaaacg 207
||||| |||||||||||||||| |||||||||| |||| |||||||| ||| || ||||
Sbjct: 271 gggtgccgtgcaactggaacgggatggacatcgcgttcaaggtggacggcgggtcgaacg 330
Query: 208 ccaactacctggccatggccatcgagtacgagtccggggacgg 250
| |||||| |||| || ||||||||||||||||| |||||
Sbjct: 331 cgaactacttggcggtgctgatcgagtacgagtccggcgacgg 373
>gb|CW204078.1|CW204078 104_631_11186348_148_37094_066 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11186348, DNA
sequence
Length = 736
Score = 77.8 bits (39), Expect = 1e-012
Identities = 63/71 (88%)
Strand = Plus / Minus
Query: 373 tccgcctcacctcgggctccggcagggtcctcgtcgccagcaacgtcatccccgccggat 432
||||||||||||| | |||||||| ||| |||||||||| |||||||||||||||||| |
Sbjct: 416 tccgcctcacctccgactccggcaaggtgctcgtcgccaacaacgtcatccccgccggct 357
Query: 433 ggcagcccggc 443
|| | ||||||
Sbjct: 356 ggaaccccggc 346
Score = 40.1 bits (20), Expect = 0.27
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 175 acatcgccttcagggtggac 194
||||||||||||||||||||
Sbjct: 617 acatcgccttcagggtggac 598
>gb|CW402616.1|CW402616 fsbb001f093p05k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f093p05, DNA
sequence
Length = 658
Score = 77.8 bits (39), Expect = 1e-012
Identities = 63/71 (88%)
Strand = Plus / Minus
Query: 373 tccgcctcacctcgggctccggcagggtcctcgtcgccagcaacgtcatccccgccggat 432
||||||||||||| | |||||||| ||| |||||||||| |||||||||||||||||| |
Sbjct: 391 tccgcctcacctccgactccggcaaggtgctcgtcgccaacaacgtcatccccgccggct 332
Query: 433 ggcagcccggc 443
|| | ||||||
Sbjct: 331 ggaaccccggc 321
Score = 40.1 bits (20), Expect = 0.27
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 175 acatcgccttcagggtggac 194
||||||||||||||||||||
Sbjct: 592 acatcgccttcagggtggac 573
>gb|BE357973.1|BE357973 DG1_23_H03.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 582
Score = 77.8 bits (39), Expect = 1e-012
Identities = 63/71 (88%)
Strand = Plus / Plus
Query: 373 tccgcctcacctcgggctccggcagggtcctcgtcgccagcaacgtcatccccgccggat 432
||||||||||||| | |||||||| ||| |||||||||| |||||||||||||||||| |
Sbjct: 190 tccgcctcacctccgactccggcaaggtgctcgtcgccaacaacgtcatccccgccggct 249
Query: 433 ggcagcccggc 443
|| | ||||||
Sbjct: 250 ggaaccccggc 260
>gb|CD230488.1|CD230488 SS1_44_B08.b1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_44_B08_A012 3', mRNA sequence
Length = 503
Score = 77.8 bits (39), Expect = 1e-012
Identities = 63/71 (88%)
Strand = Plus / Plus
Query: 373 tccgcctcacctcgggctccggcagggtcctcgtcgccagcaacgtcatccccgccggat 432
||||||||||||| | |||||||| ||| |||||||||| |||||||||||||||||| |
Sbjct: 104 tccgcctcacctccgactccggcaaggtgctcgtcgccaacaacgtcatccccgccggct 163
Query: 433 ggcagcccggc 443
|| | ||||||
Sbjct: 164 ggaaccccggc 174
>gb|CD233638.1|CD233638 SS1_3_G02.b1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_3_G02_A012 3', mRNA sequence
Length = 542
Score = 77.8 bits (39), Expect = 1e-012
Identities = 63/71 (88%)
Strand = Plus / Plus
Query: 373 tccgcctcacctcgggctccggcagggtcctcgtcgccagcaacgtcatccccgccggat 432
||||||||||||| | |||||||| ||| |||||||||| |||||||||||||||||| |
Sbjct: 139 tccgcctcacctccgactccggcaaggtgctcgtcgccaacaacgtcatccccgccggct 198
Query: 433 ggcagcccggc 443
|| | ||||||
Sbjct: 199 ggaaccccggc 209
>gb|CD428756.1|CD428756 ETH1_36_H11.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_36_H11_A002 3', mRNA sequence
Length = 531
Score = 77.8 bits (39), Expect = 1e-012
Identities = 63/71 (88%)
Strand = Plus / Plus
Query: 373 tccgcctcacctcgggctccggcagggtcctcgtcgccagcaacgtcatccccgccggat 432
||||||||||||| | |||||||| ||| |||||||||| |||||||||||||||||| |
Sbjct: 148 tccgcctcacctccgactccggcaaggtgctcgtcgccaacaacgtcatccccgccggct 207
Query: 433 ggcagcccggc 443
|| | ||||||
Sbjct: 208 ggaaccccggc 218
>gb|CD432496.1|CD432496 ETH1_30_C04.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_30_C04_A002 3', mRNA sequence
Length = 657
Score = 77.8 bits (39), Expect = 1e-012
Identities = 63/71 (88%)
Strand = Plus / Plus
Query: 373 tccgcctcacctcgggctccggcagggtcctcgtcgccagcaacgtcatccccgccggat 432
||||||||||||| | |||||||| ||| |||||||||| |||||||||||||||||| |
Sbjct: 245 tccgcctcacctccgactccggcaaggtgctcgtcgccaacaacgtcatccccgccggct 304
Query: 433 ggcagcccggc 443
|| | ||||||
Sbjct: 305 ggaaccccggc 315
Score = 40.1 bits (20), Expect = 0.27
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 175 acatcgccttcagggtggac 194
||||||||||||||||||||
Sbjct: 44 acatcgccttcagggtggac 63
>gb|CD462510.1|CD462510 ETH1_38_D10.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_38_D10_A002 3', mRNA sequence
Length = 669
Score = 77.8 bits (39), Expect = 1e-012
Identities = 63/71 (88%)
Strand = Plus / Plus
Query: 373 tccgcctcacctcgggctccggcagggtcctcgtcgccagcaacgtcatccccgccggat 432
||||||||||||| | |||||||| ||| |||||||||| |||||||||||||||||| |
Sbjct: 244 tccgcctcacctccgactccggcaaggtgctcgtcgccaacaacgtcatccccgccggct 303
Query: 433 ggcagcccggc 443
|| | ||||||
Sbjct: 304 ggaaccccggc 314
Score = 40.1 bits (20), Expect = 0.27
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 175 acatcgccttcagggtggac 194
||||||||||||||||||||
Sbjct: 43 acatcgccttcagggtggac 62
>gb|CN146372.1|CN146372 WOUND1_39_H03.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_39_H03_A002 5', mRNA sequence
Length = 666
Score = 77.8 bits (39), Expect = 1e-012
Identities = 66/75 (88%)
Strand = Plus / Plus
Query: 51 cactttgacctgagcgggacggcgttcggtgccatggcgaagcccggccaggccgaccag 110
||||| ||| ||||||| ||||| ||||| ||||||||||| ||||||||||||||| ||
Sbjct: 469 cacttcgacatgagcggaacggcattcggcgccatggcgaaccccggccaggccgacaag 528
Query: 111 ctccggaacgccggc 125
|| || |||||||||
Sbjct: 529 ctgcgcaacgccggc 543
>gb|CW253166.1|CW253166 104_716_11224935_116_35104_054 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11224935, DNA
sequence
Length = 674
Score = 71.9 bits (36), Expect = 8e-011
Identities = 81/96 (84%)
Strand = Plus / Minus
Query: 373 tccgcctcacctcgggctccggcagggtcctcgtcgccagcaacgtcatccccgccggat 432
|||| |||||||| | |||||||||||| |||||||||||||||| |||||| |||| |
Sbjct: 374 tccggctcacctccgactccggcagggtgctcgtcgccagcaacgccatcccggccgcgt 315
Query: 433 ggcagcccggcagaacctaccgctccgtcgtcaact 468
|| |||||||| |||||||| ||| | |||||||
Sbjct: 314 ggacgcccggcaagacctaccgttccttggtcaact 279
>gb|CW376698.1|CW376698 fsbb001f054l06f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f054l06, DNA
sequence
Length = 588
Score = 71.9 bits (36), Expect = 8e-011
Identities = 81/96 (84%)
Strand = Plus / Plus
Query: 373 tccgcctcacctcgggctccggcagggtcctcgtcgccagcaacgtcatccccgccggat 432
|||| |||||||| | |||||||||||| |||||||||||||||| |||||| |||| |
Sbjct: 420 tccggctcacctccgactccggcagggtgctcgtcgccagcaacgccatcccggccgcgt 479
Query: 433 ggcagcccggcagaacctaccgctccgtcgtcaact 468
|| |||||||| |||||||| ||| | |||||||
Sbjct: 480 ggacgcccggcaagacctaccgttccttggtcaact 515
Score = 40.1 bits (20), Expect = 0.27
Identities = 41/48 (85%)
Strand = Plus / Plus
Query: 50 gcactttgacctgagcgggacggcgttcggtgccatggcgaagcccgg 97
|||||| ||| ||||||| ||||| | || |||||||||||||||||
Sbjct: 94 gcacttcgacatgagcggcacggccatgggcgccatggcgaagcccgg 141
>gb|CW480555.1|CW480555 fsbb001f239k22f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f239k22, DNA
sequence
Length = 361
Score = 71.9 bits (36), Expect = 8e-011
Identities = 81/96 (84%)
Strand = Plus / Plus
Query: 373 tccgcctcacctcgggctccggcagggtcctcgtcgccagcaacgtcatccccgccggat 432
|||| |||||||| | |||||||||||| |||||||||||||||| |||||| |||| |
Sbjct: 187 tccggctcacctccgactccggcagggtgctcgtcgccagcaacgccatcccggccgcgt 246
Query: 433 ggcagcccggcagaacctaccgctccgtcgtcaact 468
|| |||||||| |||||||| ||| | |||||||
Sbjct: 247 ggacgcccggcaagacctaccgttccttggtcaact 282
>gb|BG159238.1|BG159238 OV2_5_B04.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA sequence
Length = 445
Score = 71.9 bits (36), Expect = 8e-011
Identities = 69/80 (86%)
Strand = Plus / Plus
Query: 389 ctccggcagggtcctcgtcgccagcaacgtcatccccgccggatggcagcccggcagaac 448
|||||||| ||| |||||||||| |||||||||||||||||| ||| | |||||| |||
Sbjct: 6 ctccggcaaggtgctcgtcgccaacaacgtcatccccgccggctggaaccccggcgcaac 65
Query: 449 ctaccgctccgtcgtcaact 468
||||||||| | |||||||
Sbjct: 66 gtaccgctccctggtcaact 85
>gb|CD210102.1|CD210102 HS1_57_F11.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_57_F11_A012 3', mRNA sequence
Length = 692
Score = 71.9 bits (36), Expect = 8e-011
Identities = 81/96 (84%)
Strand = Plus / Plus
Query: 373 tccgcctcacctcgggctccggcagggtcctcgtcgccagcaacgtcatccccgccggat 432
|||| |||||||| | |||||||||||| |||||||||||||||| |||||| |||| |
Sbjct: 252 tccggctcacctccgactccggcagggtgctcgtcgccagcaacgccatcccggccgcgt 311
Query: 433 ggcagcccggcagaacctaccgctccgtcgtcaact 468
|| |||||||| |||||||| ||| | |||||||
Sbjct: 312 ggacgcccggcaagacctaccgttccttggtcaact 347
>gb|CD221639.1|CD221639 CCC1_70_G11.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_70_G11_A007 3', mRNA sequence
Length = 550
Score = 71.9 bits (36), Expect = 8e-011
Identities = 81/96 (84%)
Strand = Plus / Plus
Query: 373 tccgcctcacctcgggctccggcagggtcctcgtcgccagcaacgtcatccccgccggat 432
|||| |||||||| | |||||||||||| |||||||||||||||| |||||| |||| |
Sbjct: 90 tccggctcacctccgactccggcagggtgctcgtcgccagcaacgccatcccggccgcgt 149
Query: 433 ggcagcccggcagaacctaccgctccgtcgtcaact 468
|| |||||||| |||||||| ||| | |||||||
Sbjct: 150 ggacgcccggcaagacctaccgttccttggtcaact 185
>gb|CD221661.1|CD221661 CCC1_70_E11.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_70_E11_A007 3', mRNA sequence
Length = 561
Score = 71.9 bits (36), Expect = 8e-011
Identities = 81/96 (84%)
Strand = Plus / Plus
Query: 373 tccgcctcacctcgggctccggcagggtcctcgtcgccagcaacgtcatccccgccggat 432
|||| |||||||| | |||||||||||| |||||||||||||||| |||||| |||| |
Sbjct: 157 tccggctcacctccgactccggcagggtgctcgtcgccagcaacgccatcccggccgcgt 216
Query: 433 ggcagcccggcagaacctaccgctccgtcgtcaact 468
|| |||||||| |||||||| ||| | |||||||
Sbjct: 217 ggacgcccggcaagacctaccgttccttggtcaact 252
>gb|CW133289.1|CW133289 104_517_11116679_148_34812_096 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11116679, DNA
sequence
Length = 439
Score = 69.9 bits (35), Expect = 3e-010
Identities = 77/91 (84%)
Strand = Plus / Minus
Query: 378 ctcacctcgggctccggcagggtcctcgtcgccagcaacgtcatccccgccggatggcag 437
|||||||| | |||||||||||| |||||||||||||||| |||||| |||| ||| |
Sbjct: 438 ctcacctccgactccggcagggtgctcgtcgccagcaacgccatcccggccgtgtggacg 379
Query: 438 cccggcagaacctaccgctccgtcgtcaact 468
||||||| |||||||| ||| | |||||||
Sbjct: 378 cccggcaagacctaccgttccttggtcaact 348
>gb|CN125001.1|CN125001 RHOH1_8_F08.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_8_F08_A002 3', mRNA sequence
Length = 730
Score = 69.9 bits (35), Expect = 3e-010
Identities = 62/71 (87%)
Strand = Plus / Plus
Query: 373 tccgcctcacctcgggctccggcagggtcctcgtcgccagcaacgtcatccccgccggat 432
|||||||||| || | |||||||| ||| |||||||||| |||||||||||||||||| |
Sbjct: 319 tccgcctcacttccgactccggcaaggtgctcgtcgccaacaacgtcatccccgccggct 378
Query: 433 ggcagcccggc 443
|| | ||||||
Sbjct: 379 ggaaccccggc 389
Score = 40.1 bits (20), Expect = 0.27
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 81 gccatggcgaagcccggccaggccgaccagct 112
|||||||||||||||||| ||||||| ||||
Sbjct: 24 gccatggcgaagcccggcatggccgacaagct 55
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 235,427
Number of Sequences: 832831
Number of extensions: 235427
Number of successful extensions: 72036
Number of sequences better than 0.5: 238
Number of HSP's better than 0.5 without gapping: 238
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 71649
Number of HSP's gapped (non-prelim): 370
length of query: 697
length of database: 491,359,669
effective HSP length: 20
effective length of query: 677
effective length of database: 474,703,049
effective search space: 321373964173
effective search space used: 321373964173
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)