BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3838122.2.1
(1865 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BE361676.1|BE361676 DG1_81_H04.g1_A002 Dark Grown 1 (DG1... 809 0.0
gb|CW294614.1|CW294614 104_775_11415280_148_35609_054 Sorgh... 615 e-174
gb|BZ349897.1|BZ349897 hr47a12.g1 WGS-SbicolorF (JM107 adap... 589 e-166
gb|CW492384.1|CW492384 fsbb001f282k08f0 Sorghum methylation... 561 e-158
gb|CW384798.1|CW384798 fsbb001f067p17f0 Sorghum methylation... 478 e-132
gb|BE361549.1|BE361549 DG1_81_H04.b1_A002 Dark Grown 1 (DG1... 476 e-132
gb|BG558451.1|BG558451 RHIZ2_67_F11.b1_A003 Rhizome2 (RHIZ2... 460 e-127
gb|CW099054.1|CW099054 104_465_11003344_148_34369_050 Sorgh... 450 e-124
gb|CW294613.1|CW294613 104_775_11415280_116_35605_054 Sorgh... 339 6e-091
gb|BF422253.1|BF422253 FM1_13_B02.b1_A003 Floral-Induced Me... 278 2e-072
gb|CW492385.1|CW492385 fsbb001f282k08k0 Sorghum methylation... 206 5e-051
gb|BG558157.1|BG558157 RHIZ2_67_F11.g1_A003 Rhizome2 (RHIZ2... 196 5e-048
gb|AW922406.1|AW922406 DG1_18_E05.g1_A002 Dark Grown 1 (DG1... 168 1e-039
gb|BF422199.1|BF422199 FM1_13_B02.g1_A003 Floral-Induced Me... 159 1e-036
gb|BE125476.1|BE125476 DG1_26_E05.b1_A002 Dark Grown 1 (DG1... 155 2e-035
gb|BZ348381.1|BZ348381 hp57a05.g1 WGS-SbicolorF (JM107 adap... 117 4e-024
gb|CW169907.1|CW169907 104_580_11154918_148_36511_029 Sorgh... 92 2e-016
gb|CW200492.1|CW200492 104_626_11184087_148_36870_064 Sorgh... 92 2e-016
gb|CW257599.1|CW257599 104_723_11227424_116_35161_030 Sorgh... 92 2e-016
gb|CW453451.1|CW453451 fsbb001f197h09f0 Sorghum methylation... 92 2e-016
gb|CW265997.1|CW265997 104_735_11232189_116_35271_087 Sorgh... 84 5e-014
gb|CF484409.1|CF484409 POL1_25_D08.b1_A002 Pollen Sorghum b... 84 5e-014
gb|CL159656.1|CL159656 104_349_10804417_116_31382_241 Sorgh... 82 2e-013
gb|CW033209.1|CW033209 104_262_10501822_115_30362 Sorghum m... 82 2e-013
gb|CW276976.1|CW276976 104_750_11405776_148_35399_050 Sorgh... 82 2e-013
gb|CW439175.1|CW439175 fsbb001f157d01k0 Sorghum methylation... 82 2e-013
gb|CW050896.1|CW050896 104_291_10514924_114_30192 Sorghum m... 80 8e-013
gb|CW257600.1|CW257600 104_723_11227424_148_35157_030 Sorgh... 70 8e-010
gb|BE125263.1|BE125263 DG1_18_E05.b1_A002 Dark Grown 1 (DG1... 68 3e-009
gb|CW200491.1|CW200491 104_626_11184087_116_36869_064 Sorgh... 66 1e-008
gb|CF483263.1|CF483263 POL1_21_B02.b1_A002 Pollen Sorghum b... 66 1e-008
gb|CW100262.1|CW100262 104_467_11004005_116_34388_021 Sorgh... 62 2e-007
gb|CW199054.1|CW199054 104_624_11183306_116_36856_015 Sorgh... 58 3e-006
gb|BE595814.1|BE595814 PI1_54_D08.b1_A002 Pathogen induced ... 58 3e-006
gb|CN135740.1|CN135740 OX1_38_E07.g1_A002 Oxidatively-stres... 58 3e-006
gb|CW400046.1|CW400046 fsbb001f090c21f0 Sorghum methylation... 56 1e-005
gb|CW070613.1|CW070613 104_321_10526871_1_30090 Sorghum met... 52 2e-004
gb|CW298321.1|CW298321 104_780_11462518_116_35647_081 Sorgh... 48 0.003
gb|CW394782.1|CW394782 fsbb001f082i17f0 Sorghum methylation... 48 0.003
gb|CW130478.1|CW130478 104_513_11115136_116_34781_064 Sorgh... 46 0.012
gb|CL151746.1|CL151746 104_334_10779469_114_31361_253 Sorgh... 44 0.046
gb|CL151747.1|CL151747 104_334_10779469_116_31362_253 Sorgh... 44 0.046
gb|CW042089.1|CW042089 104_275_10506931_115_30285 Sorghum m... 44 0.046
gb|CW473333.1|CW473333 fsbb001f228k15k0 Sorghum methylation... 44 0.046
gb|BZ330645.1|BZ330645 hv94c11.b1 WGS-SbicolorF (JM107 adap... 42 0.18
gb|BZ330718.1|BZ330718 hv95c11.b1 WGS-SbicolorF (JM107 adap... 42 0.18
gb|BZ330733.1|BZ330733 hv95d11.b1 WGS-SbicolorF (JM107 adap... 42 0.18
gb|BZ330742.1|BZ330742 hv95e11.b1 WGS-SbicolorF (JM107 adap... 42 0.18
gb|BZ346752.1|BZ346752 hv83h09.b1 WGS-SbicolorF (JM107 adap... 42 0.18
gb|CW133234.1|CW133234 104_516_11116649_148_34802_065 Sorgh... 42 0.18
gb|CW331356.1|CW331356 104_828_11480860_116_36026_006 Sorgh... 42 0.18
gb|CW354807.1|CW354807 fsbb001f019c20f0 Sorghum methylation... 42 0.18
gb|CW372707.1|CW372707 fsbb001f048l19f0 Sorghum methylation... 42 0.18
gb|CW441491.1|CW441491 fsbb001f160k16f0 Sorghum methylation... 42 0.18
gb|AW564409.1|AW564409 LG1_292_D07.b1_A002 Light Grown 1 (L... 42 0.18
gb|CF489835.1|CF489835 POL1_59_H07.g1_A002 Pollen Sorghum b... 42 0.18
gb|CN145661.1|CN145661 WOUND1_34_A04.g1_A002 Wounded leaves... 42 0.18
gb|CN149900.1|CN149900 WOUND1_65_C12.g1_A002 Wounded leaves... 42 0.18
>gb|BE361676.1|BE361676 DG1_81_H04.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 664
Score = 809 bits (408), Expect = 0.0
Identities = 536/578 (92%), Gaps = 3/578 (0%)
Strand = Plus / Minus
Query: 356 ccatgtagtcgtggttgtatgacgagtccatctcgtggacgacgagcttcgtggccgtga 415
||||||||||||||||||| || ||||||||||||||||||||||||||| |||| ||||
Sbjct: 575 ccatgtagtcgtggttgtaggatgagtccatctcgtggacgacgagcttcttggcggtga 516
Query: 416 cccgcgcggcggtggcgttgttgaagaggaagacgccggcgttggcgtagatggcctcgg 475
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 515 cgcgcgcggcggtggcgttgttgaagaggaacacgccggcgttggcgtagatggcctcgg 456
Query: 476 tggggtagacgcgcgatgtggcggtggacctcccgccctgcgcgaagctctcgacgatgg 535
|||||||||||||||| || || || ||||| ||||||||||||||||||||||||||||
Sbjct: 455 tggggtagacgcgcgaggttgccgtcgaccttccgccctgcgcgaagctctcgacgatgg 396
Query: 536 agtggtcgacgagcacccggagcgagagcgtggcctcgtcctccagcacggggacggcgc 595
|||||||||||||||| |||||||||||||||| |||||| |||||||||||||||| ||
Sbjct: 395 agtggtcgacgagcacgcggagcgagagcgtggtctcgtcgtccagcacggggacggagc 336
Query: 596 tgccgacgacgcgcttgacgatgtcggtggcgctggaggagcgggactcgtcctggcaga 655
|||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct: 335 tgccgacgacgcgcttgacgatgtcgttggcgctggaggaccgggactcgtcctggcaga 276
Query: 656 agtgcgtggcgagggagccgtccaggcccttggccacgtagaagtagacggccgtctgct 715
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 agtgcgtggtgagggagccgtccaggcccttggccacgtagaagtagacggccgtctgct 216
Query: 716 cgcggcggaggcggcggtcggcgaggacgaacaggccgaagggccccagcgcgccgcggc 775
| ||| ||| | |||||||||||||| |||||||||||| || || || ||||||
Sbjct: 215 c---gcgcaggtgcttgtcggcgaggacgagcaggccgaaggggccgagggcaccgcggg 159
Query: 776 cggcggcgcccccgctggtgctgcagttgtagcccacgtccgcctcgttgagcgacatga 835
| |||||||| ||||| |||||||||||||| |||||||| |||||||||||||||||||
Sbjct: 158 ccgcggcgccaccgctcgtgctgcagttgtaccccacgtcggcctcgttgagcgacatga 99
Query: 836 cggcgcggcggtccagctggaactccgcctcgatgtccagctgggtggcgcggcggaggt 895
||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct: 98 cggcgcggcggtcgagctggaactccgcctcgatgtccagctgcgtggcgcgccggaggt 39
Query: 896 tgagcgggaacacggagccgtagtcgatggtgatgccg 933
||||||||||| | ||||||||||||||||||||||||
Sbjct: 38 tgagcgggaacgccgagccgtagtcgatggtgatgccg 1
>gb|CW294614.1|CW294614 104_775_11415280_148_35609_054 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11415280, DNA
sequence
Length = 605
Score = 615 bits (310), Expect = e-174
Identities = 531/605 (87%), Gaps = 6/605 (0%)
Strand = Plus / Plus
Query: 1200 gtcgatcggcgtccaggcgttggcggccgcgtcgtacctccccagcgcgtagtagtcgtg 1259
||||| ||||||||| |||||| |||||| ||||||||||| |||||||||||||| ||
Sbjct: 1 gtcgagcggcgtccactcgttggtggccgcatcgtacctcccgagcgcgtagtagtcatg 60
Query: 1260 gcggtcgtcgtccatgctggccttcatgacgtgcaggacgtccccggcgacggctccgtt 1319
||||||||||||||||||||||||||| ||||||| ||||||||| | | ||| |||||
Sbjct: 61 gcggtcgtcgtccatgctggccttcataacgtgcacgacgtccccaacaatggcgccgtt 120
Query: 1320 gctggcgatggcgtcggacatgtcgacgccgttggccgacgccctgcctcgtgtggcgac 1379
|| ||| |||||||||||||||||||||||| | |||||| |||| || ||||||||
Sbjct: 121 cttgccgaaggcgtcggacatgtcgacgccgttcccggacgccttgccgcgggtggcgac 180
Query: 1380 ggggtagaagtcgatgcactcccacatgccggtgccgtcgacgcggtgcagcaggcccgg 1439
||||||||||||||||||||||||||| || || | |||||||||| || ||||| ||
Sbjct: 181 ggggtagaagtcgatgcactcccacatccccgtcctcgcgacgcggtggaggaggccggg 240
Query: 1440 gaggagctcgaagtgcaccaggtccgtggtgcggtagacgacggcgatgcccgcgtggcc 1499
||||||||||||| || | |||| |||| |||||||||||||||||||| |||||| |
Sbjct: 241 gaggagctcgaagctgacgaagtccttggtccggtagacgacggcgatgccggcgtggtc 300
Query: 1500 gtc------gtcgtccttggagccgatgacgacgcgccatgcgccgtccgaggggtcgat 1553
| | |||||||||||| |||||||||| |||||| | | |||||| |||||||
Sbjct: 301 gccctcggcgtcgtccttggacccgatgacgatgcgccaggtgttgtccgacgggtcgaa 360
Query: 1554 ccagaccgtggtggggtcgcggaagtccttgggcccgatgcccgggggcgggtacagcac 1613
||| ||||||||||||| |||||||||||||||||||| ||||| ||||||||||| ||
Sbjct: 361 ccacgccgtggtggggtcacggaagtccttgggcccgatccccggcggcgggtacaggac 420
Query: 1614 cgggttgccctcgtacttggtccagttggtgagcagcgggtcggcgtcgtcggcgggcac 1673
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct: 421 cgggttgccctcgtacttggtccagttggtgagcagcgggtcggcgtcatcggcggggac 480
Query: 1674 ggccaggcactgcacctggacggaggcgttggtggagcccctgtagagcattgcgaggcg 1733
||| |||||||||||||| |||||||||||||||||||| |||||||||| ||||||||
Sbjct: 481 ggcgaggcactgcacctgcacggaggcgttggtggagccggtgtagagcatggcgaggcg 540
Query: 1734 gccgtcggggagcgtggtggcggaccccgtccacacgccgttggtgtcgtaccactggtc 1793
|||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||
Sbjct: 541 gccgtcggggagcgtggtggcggagcctgtccagacgccgttggtgtcgtaccactggtc 600
Query: 1794 gggca 1798
||||
Sbjct: 601 cggca 605
>gb|BZ349897.1|BZ349897 hr47a12.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone hr47a12 5', DNA sequence
Length = 600
Score = 589 bits (297), Expect = e-166
Identities = 473/532 (88%), Gaps = 6/532 (1%)
Strand = Plus / Plus
Query: 1329 ggcgtcggacatgtcgacgccgttggccgacgccctgcctcgtgtggcgacggggtagaa 1388
|||||||||||||||||||||||| | |||||| |||| || |||||||||||||||||
Sbjct: 22 ggcgtcggacatgtcgacgccgttcccggacgccttgccgcgggtggcgacggggtagaa 81
Query: 1389 gtcgatgcactcccacatgccggtgccgtcgacgcggtgcagcaggcccgggaggagctc 1448
|||||||||||||||||| || || | |||||||||| || ||||| |||||||||||
Sbjct: 82 gtcgatgcactcccacatccccgtcctcgcgacgcggtggaggaggccggggaggagctc 141
Query: 1449 gaagtgcaccaggtccgtggtgcggtagacgacggcgatgcccgcgtggccgtc------ 1502
|||| || | |||| |||| |||||||||||||||||||| |||||| || |
Sbjct: 142 gaagctgacgaagtccttggtccggtagacgacggcgatgccggcgtggtcgccctcggc 201
Query: 1503 gtcgtccttggagccgatgacgacgcgccatgcgccgtccgaggggtcgatccagaccgt 1562
|||||||||||| |||||||||| |||||| | | |||||| ||||||| ||| ||||
Sbjct: 202 gtcgtccttggacccgatgacgatgcgccaggtgttgtccgacgggtcgaaccacgccgt 261
Query: 1563 ggtggggtcgcggaagtccttgggcccgatgcccgggggcgggtacagcaccgggttgcc 1622
||||||||| |||||||||||||||||||| ||||| ||||||||||| |||||||||||
Sbjct: 262 ggtggggtcacggaagtccttgggcccgatccccggcggcgggtacaggaccgggttgcc 321
Query: 1623 ctcgtacttggtccagttggtgagcagcgggtcggcgtcgtcggcgggcacggccaggca 1682
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 322 ctcgtacttggtccagttggtgagcagcgggtcggcgtcgtcggcggggacggcgaggca 381
Query: 1683 ctgcacctggacggaggcgttggtggagcccctgtagagcattgcgaggcggccgtcggg 1742
||||||||| |||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct: 382 ctgcacctgcacggaggcgttggtggagccggtgtagagcatggcgaggcggccgtcggg 441
Query: 1743 gagcgtggtggcggaccccgtccacacgccgttggtgtcgtaccactggtcgggcaccat 1802
||||||||||||||| || ||||| |||||||||||||||||||||||||| ||||||||
Sbjct: 442 gagcgtggtggcggagcctgtccagacgccgttggtgtcgtaccactggtccggcaccat 501
Query: 1803 ggccagcgggaggcggcgccagcggatcaggtcgcgggacacggcgtggccc 1854
||| ||||||||| |||||||| |||||||||||||||| ||||||||||||
Sbjct: 502 ggctagcgggaggtggcgccagtggatcaggtcgcgggagacggcgtggccc 553
>gb|CW492384.1|CW492384 fsbb001f282k08f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f282k08, DNA
sequence
Length = 632
Score = 561 bits (283), Expect = e-158
Identities = 522/602 (86%), Gaps = 6/602 (0%)
Strand = Plus / Plus
Query: 1037 cctgcagcgacgcccatcccttggacacgtccgcgcgctccgagtctgtctcgccgaccc 1096
|||||| ||| |||||||||||||| ||||| |||||||||||||| |||||||||||||
Sbjct: 31 cctgcaacgatgcccatcccttggagacgtcagcgcgctccgagtcggtctcgccgaccc 90
Query: 1097 atccccacagcacgcggcggcgcttggccgggtcgtagaacgtcttggacgcgtagaact 1156
||||||| |||||||||||||||||||| ||||| ||||| |||||||||||||| ||||
Sbjct: 91 atccccagagcacgcggcggcgcttggcggggtcatagaaggtcttggacgcgtaaaact 150
Query: 1157 tgccccagtcgtagcgcaggccgatgccgacgtccctgccggcgtcgatcggcgtccagg 1216
|||||||||| || || || ||||||||||||||| | ||||||||| |||||||||
Sbjct: 151 tgccccagtcataccggagcccgatgccgacgtccttctcggcgtcgagcggcgtccact 210
Query: 1217 cgttggcggccgcgtcgtacctccccagcgcgtagtagtcgtggcggtcgtcgtccatgc 1276
|||||| |||||| ||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct: 211 cgttggtggccgcatcgtacctcccgagcgcgtagtagtcatggcggtcgtcgtccatgc 270
Query: 1277 tggccttcatgacgtgcaggacgtccccggcgacggctccgttgctggcgatggcgtcgg 1336
|||||||||| ||||||| ||||||||| | | ||| ||||| || ||| ||||||||
Sbjct: 271 tggccttcataacgtgcacgacgtccccaacaatggcgccgttcttgccgaaggcgtcgg 330
Query: 1337 acatgtcgacgccgttggccgacgccctgcctcgtgtggcgacggggtagaagtcgatgc 1396
|||||||||||||||| | |||||| |||| || |||||||||||||||||||||||||
Sbjct: 331 acatgtcgacgccgttcccggacgccttgccgcgggtggcgacggggtagaagtcgatgc 390
Query: 1397 actcccacatgccggtgccgtcgacgcggtgcagcaggcccgggaggagctcgaagtgca 1456
|||||||||| || || | |||||||||| || ||||| ||||||||||||||| |
Sbjct: 391 actcccacatccccgtcctcgcgacgcggtggaggaggccggggaggagctcgaagctga 450
Query: 1457 ccaggtccgtggtgcggtagacgacggcgatgcccgcgtgg------ccgtcgtcgtcct 1510
| | |||| |||| |||||||||||||||||||| |||||| || |||||||||
Sbjct: 451 cgaagtccttggtccggtagacgacggcgatgccggcgtggtcgccctcggcgtcgtcct 510
Query: 1511 tggagccgatgacgacgcgccatgcgccgtccgaggggtcgatccagaccgtggtggggt 1570
|||| |||||||||| |||||| | | |||||| ||||||| ||| ||||||||||||
Sbjct: 511 tggacccgatgacgatgcgccaggtgttgtccgacgggtcgaaccacgccgtggtggggt 570
Query: 1571 cgcggaagtccttgggcccgatgcccgggggcgggtacagcaccgggttgccctcgtact 1630
| |||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||
Sbjct: 571 cacggaagtccttgggcccgatccccggcggcgggtacaggaccgggttgccctcgtact 630
Query: 1631 tg 1632
||
Sbjct: 631 tg 632
>gb|CW384798.1|CW384798 fsbb001f067p17f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f067p17, DNA
sequence
Length = 599
Score = 478 bits (241), Expect = e-132
Identities = 325/353 (92%)
Strand = Plus / Minus
Query: 1502 cgtcgtccttggagccgatgacgacgcgccatgcgccgtccgaggggtcgatccagaccg 1561
||||||||||||| |||||||||| |||||| | | |||||| ||||||| ||| |||
Sbjct: 573 cgtcgtccttggacccgatgacgatgcgccaggtgttgtccgacgggtcgaaccacgccg 514
Query: 1562 tggtggggtcgcggaagtccttgggcccgatgcccgggggcgggtacagcaccgggttgc 1621
|||||||||| |||||||||||||||||||| ||||| ||||||||||| ||||||||||
Sbjct: 513 tggtggggtcacggaagtccttgggcccgatccccggcggcgggtacaggaccgggttgc 454
Query: 1622 cctcgtacttggtccagttggtgagcagcgggtcggcgtcgtcggcgggcacggccaggc 1681
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct: 453 cctcgtacttggtccagttggtgagcagcgggtcggcgtcgtcggcggggacggcgaggc 394
Query: 1682 actgcacctggacggaggcgttggtggagcccctgtagagcattgcgaggcggccgtcgg 1741
|||||||||| |||||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct: 393 actgcacctgcacggaggcgttggtggagccggtgtagagcatggcgaggcggccgtcgg 334
Query: 1742 ggagcgtggtggcggaccccgtccacacgccgttggtgtcgtaccactggtcgggcacca 1801
|||||||||||||||| || ||||| |||||||||||||||||||||||||| |||||||
Sbjct: 333 ggagcgtggtggcggagcctgtccagacgccgttggtgtcgtaccactggtccggcacca 274
Query: 1802 tggccagcgggaggcggcgccagcggatcaggtcgcgggacacggcgtggccc 1854
|||| ||||||||| |||||||| |||||||||||||||| ||||||||||||
Sbjct: 273 tggctagcgggaggtggcgccagtggatcaggtcgcgggagacggcgtggccc 221
>gb|BE361549.1|BE361549 DG1_81_H04.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 551
Score = 476 bits (240), Expect = e-132
Identities = 467/543 (86%), Gaps = 6/543 (1%)
Strand = Plus / Minus
Query: 1032 gataccctgcagcgacgcccatcccttggacacgtccgcgcgctccgagtctgtctcgcc 1091
||||||||||| ||| |||||||||||||| ||||| |||||||||||||| ||||||||
Sbjct: 551 gataccctgcaacgatgcccatcccttggagacgtcagcgcgctccgagtcggtctcgcc 492
Query: 1092 gacccatccccacagcacgcggcggcgcttggccgggtcgtagaacgtcttggacgcgta 1151
|||||||||||| |||||||||||||||||||| ||||| ||||| ||||||||||||||
Sbjct: 491 gacccatccccagagcacgcggcggcgcttggcggggtcatagaaggtcttggacgcgta 432
Query: 1152 gaacttgccccagtcgtagcgcaggccgatgccgacgtccctgccggcgtcgatcggcgt 1211
|||||||||||||| || || || ||||||||||||||| | ||||||||| ||||||
Sbjct: 431 aaacttgccccagtcataccggagcccgatgccgacgtccttctcggcgtcgagcggcgt 372
Query: 1212 ccaggcgttggcggccgcgtcgtacctccccagcgcgtagtagtcgtggcggtcgtcgtc 1271
||| |||||| |||||| ||||||||||| |||||||||||||| ||||||||||||||
Sbjct: 371 ccactcgttggtggccgcatcgtacctcccgagcgcgtagtagtcatggcggtcgtcgtc 312
Query: 1272 catgctggccttcatgacgtgcaggacgtccccggcgacggctccgttgctggcgatggc 1331
||||||||||||||| ||||||| ||||||||| | | ||| ||||| || ||| |||
Sbjct: 311 catgctggccttcataacgtgcacgacgtccccaacaatggcgccgttcttgccgaaggc 252
Query: 1332 gtcggacatgtcgacgccgttggccgacgccctgcctcgtgtggcgacggggtagaagtc 1391
||||||||||||||||||||| | |||||| |||| || ||||||||||||||||||||
Sbjct: 251 gtcggacatgtcgacgccgttcccggacgccttgccgcgggtggcgacggggtagaagtc 192
Query: 1392 gatgcactcccacatgccggtgccgtcgacgcggtgcagcaggcccgggaggagctcgaa 1451
||||||||||||||| || || | |||||||||| || ||||| ||||||||||||||
Sbjct: 191 gatgcactcccacatccccgtcctcgcgacgcggtggaggaggccggggaggagctcgaa 132
Query: 1452 gtgcaccaggtccgtggtgcggtagacgacggcgatgcccgcgtgg------ccgtcgtc 1505
| || | |||| |||| |||||||||||||||||||| |||||| || ||||
Sbjct: 131 gctgacgaagtccttggtccggtagacgacggcgatgccggcgtggtcgccctcggcgtc 72
Query: 1506 gtccttggagccgatgacgacgcgccatgcgccgtccgaggggtcgatccagaccgtggt 1565
||||||||| |||||||||| |||||| | | |||||| ||||||| ||| |||||||
Sbjct: 71 gtccttggacccgatgacgatgcgccaggtgttgtccgacgggtcgaaccacgccgtggt 12
Query: 1566 ggg 1568
|||
Sbjct: 11 ggg 9
>gb|BG558451.1|BG558451 RHIZ2_67_F11.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 459
Score = 460 bits (232), Expect = e-127
Identities = 384/435 (88%), Gaps = 6/435 (1%)
Strand = Plus / Minus
Query: 1329 ggcgtcggacatgtcgacgccgttggccgacgccctgcctcgtgtggcgacggggtagaa 1388
|||||||||||||||||||||||| | |||||| |||| || |||||||||||||||||
Sbjct: 446 ggcgtcggacatgtcgacgccgttcccggacgccttgccgcgggtggcgacggggtagaa 387
Query: 1389 gtcgatgcactcccacatgccggtgccgtcgacgcggtgcagcaggcccgggaggagctc 1448
|||||||||||||||||| || || | |||||||||| |||| ||| |||||||||||
Sbjct: 386 gtcgatgcactcccacatccccgtcctcgcgacgcggtggagcatgccagggaggagctc 327
Query: 1449 gaagtgcaccaggtccgtggtgcggtagacgacggcgatgcccgcgtggccgtc------ 1502
|||| || | |||| |||| |||||||||||||||||||| |||||| || |
Sbjct: 326 gaagctgacgaagtccttggtccggtagacgacggcgatgccggcgtggtcgccctcggc 267
Query: 1503 gtcgtccttggagccgatgacgacgcgccatgcgccgtccgaggggtcgatccagaccgt 1562
|||||||||||| |||||||||| |||||| | | |||||| ||||||| ||| ||||
Sbjct: 266 gtcgtccttggacccgatgacgatgcgccaggtgttgtccgacgggtcgaaccacgccgt 207
Query: 1563 ggtggggtcgcggaagtccttgggcccgatgcccgggggcgggtacagcaccgggttgcc 1622
||||||||| |||||||||||||||||||| ||||| ||||||||||| |||||||||||
Sbjct: 206 ggtggggtcacggaagtccttgggcccgatccccggcggcgggtacaggaccgggttgcc 147
Query: 1623 ctcgtacttggtccagttggtgagcagcgggtcggcgtcgtcggcgggcacggccaggca 1682
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 146 ctcgtacttggtccagttggtgagcagcgggtcggcgtcgtcggcggggacggcgaggca 87
Query: 1683 ctgcacctggacggaggcgttggtggagcccctgtagagcattgcgaggcggccgtcggg 1742
||||||||| |||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct: 86 ctgcacctgcacggaggcgttggtggagccggtgtagagcatggcgaggcggccgtcggg 27
Query: 1743 gagcgtggtggcgga 1757
|||||||||||||||
Sbjct: 26 gagcgtggtggcgga 12
>gb|CW099054.1|CW099054 104_465_11003344_148_34369_050 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11003344, DNA
sequence
Length = 359
Score = 450 bits (227), Expect = e-124
Identities = 290/311 (93%)
Strand = Plus / Plus
Query: 732 gtcggcgaggacgaacaggccgaagggccccagcgcgccgcggccggcggcgcccccgct 791
|||||||||||||| |||||||||||| || || || |||||| | |||||||| |||||
Sbjct: 3 gtcggcgaggacgagcaggccgaaggggccgagggcaccgcgggccgcggcgccaccgct 62
Query: 792 ggtgctgcagttgtagcccacgtccgcctcgttgagcgacatgacggcgcggcggtccag 851
|||||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||
Sbjct: 63 cgtgctgcagttgtaccccacgtcggcctcgttgagcgacatgacggcgcggcggtcgag 122
Query: 852 ctggaactccgcctcgatgtccagctgggtggcgcggcggaggttgagcgggaacacgga 911
||||||||||||||||||||||||||| |||||||| |||||||||||||||||| | ||
Sbjct: 123 ctggaactccgcctcgatgtccagctgcgtggcgcgccggaggttgagcgggaacgccga 182
Query: 912 gccgtagtcgatggtgatgccgctgaggtcggtggagttggtgcgcagcgtctccacctc 971
|||||||||||||||||||||||||||||| |||||||||||||||||||||||| | ||
Sbjct: 183 gccgtagtcgatggtgatgccgctgaggtccgtggagttggtgcgcagcgtctccgcttc 242
Query: 972 ctccacgggccactgaagcaggttgctgcccgtcttggtgtccaggagcaccgtccgggg 1031
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 243 ctccacgggccactgcagcaggttgctgcccgtcttggtgtccagcagcaccgtccgggg 302
Query: 1032 gataccctgca 1042
|||||||||||
Sbjct: 303 gataccctgca 313
>gb|CW294613.1|CW294613 104_775_11415280_116_35605_054 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11415280, DNA
sequence
Length = 701
Score = 339 bits (171), Expect = 6e-091
Identities = 227/243 (93%), Gaps = 2/243 (0%)
Strand = Plus / Minus
Query: 1612 accgggttgccctcgtacttggtccagttggtgagcagcgggtcggcgtcgtcggcgggc 1671
||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct: 694 accgggttgccctcgtacttg-tccagt-ggtgagcagcgggtcggcgtcgtcggcgggg 637
Query: 1672 acggccaggcactgcacctggacggaggcgttggtggagcccctgtagagcattgcgagg 1731
||||| |||||||||||||| |||||||||||||||||||| |||||||||| ||||||
Sbjct: 636 acggcgaggcactgcacctgcacggaggcgttggtggagccggtgtagagcatggcgagg 577
Query: 1732 cggccgtcggggagcgtggtggcggaccccgtccacacgccgttggtgtcgtaccactgg 1791
|||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||
Sbjct: 576 cggccgtcggggagcgtggtggcggagcctgtccagacgccgttggtgtcgtaccactgg 517
Query: 1792 tcgggcaccatggccagcgggaggcggcgccagcggatcaggtcgcgggacacggcgtgg 1851
|| ||||||||||| ||||||||| |||||||| |||||||||||||||| |||||||||
Sbjct: 516 tccggcaccatggctagcgggaggtggcgccagtggatcaggtcgcgggagacggcgtgg 457
Query: 1852 ccc 1854
|||
Sbjct: 456 ccc 454
>gb|BF422253.1|BF422253 FM1_13_B02.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum propinquum
cDNA, mRNA sequence
Length = 377
Score = 278 bits (140), Expect = 2e-072
Identities = 292/343 (85%), Gaps = 6/343 (1%)
Strand = Plus / Minus
Query: 1196 cggcgtcgatcggcgtccaggcgttggcggccgcgtcgtacctccccagcgcgtagtagt 1255
||||||||| ||||||||| |||||| |||||||||||||||||| |||||||||||||
Sbjct: 368 cggcgtcgagcggcgtccactcgttggtggccgcgtcgtacctcccgagcgcgtagtagt 309
Query: 1256 cgtggcggtcgtcgtccatgctggccttcatgacgtgcaggacgtccccggcgacggctc 1315
| || |||||||||||||||||||||||||| ||||||| ||||||||| | | ||| |
Sbjct: 308 catgtcggtcgtcgtccatgctggccttcataacgtgcacgacgtccccaacaatggcgc 249
Query: 1316 cgttgctggcgatggcgtcggacatgtcgacgccgttggccgacgccctgcctcgtgtgg 1375
|||| || ||| |||||||||||||||||||||||| | |||||| |||| || ||||
Sbjct: 248 cgttcttgccgaaggcgtcggacatgtcgacgccgttcccggacgccttgccgcgggtgg 189
Query: 1376 cgacggggtagaagtcgatgcactcccacatgccggtgccgtcgacgcggtgcagcaggc 1435
||||||||||||||||||||||||||||||| || || | |||||||||| |||| ||
Sbjct: 188 cgacggggtagaagtcgatgcactcccacatccccgtcctcgcgacgcggtggagcatgc 129
Query: 1436 ccgggaggagctcgaagtgcaccaggtccgtggtgcggtagacgacggcgatgcccgcgt 1495
| ||||||||||||||| || | |||| |||| |||||||||||||||||||| ||||
Sbjct: 128 cagggaggagctcgaagctgacgaagtccttggtccggtagacgacggcgatgccggcgt 69
Query: 1496 gg------ccgtcgtcgtccttggagccgatgacgacgcgcca 1532
|| || ||||||||||||| |||||||||| ||||||
Sbjct: 68 ggtcgccctcggcgtcgtccttggacccgatgacgatgcgcca 26
>gb|CW492385.1|CW492385 fsbb001f282k08k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f282k08, DNA
sequence
Length = 730
Score = 206 bits (104), Expect = 5e-051
Identities = 131/140 (93%)
Strand = Plus / Minus
Query: 1715 tgtagagcattgcgaggcggccgtcggggagcgtggtggcggaccccgtccacacgccgt 1774
|||||||||| |||||||||||||||||||||||||||||||| || ||||| |||||||
Sbjct: 725 tgtagagcatggcgaggcggccgtcggggagcgtggtggcggagcctgtccagacgccgt 666
Query: 1775 tggtgtcgtaccactggtcgggcaccatggccagcgggaggcggcgccagcggatcaggt 1834
||||||||||||||||||| ||||||||||| ||||||||| |||||||| |||||||||
Sbjct: 665 tggtgtcgtaccactggtccggcaccatggctagcgggaggtggcgccagtggatcaggt 606
Query: 1835 cgcgggacacggcgtggccc 1854
||||||| ||||||||||||
Sbjct: 605 cgcgggagacggcgtggccc 586
>gb|BG558157.1|BG558157 RHIZ2_67_F11.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 492
Score = 196 bits (99), Expect = 5e-048
Identities = 120/127 (94%)
Strand = Plus / Minus
Query: 356 ccatgtagtcgtggttgtatgacgagtccatctcgtggacgacgagcttcgtggccgtga 415
||||||||||||||||||| || ||||||||||||||||||||||||||| |||||||||
Sbjct: 127 ccatgtagtcgtggttgtaggatgagtccatctcgtggacgacgagcttcttggccgtga 68
Query: 416 cccgcgcggcggtggcgttgttgaagaggaagacgccggcgttggcgtagatggcctcgg 475
| || |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct: 67 cgcgtgcggcggtggcgttgttgaagaggaacacgccggcgttggcgtaaatggcctcgg 8
Query: 476 tggggta 482
|||||||
Sbjct: 7 tggggta 1
>gb|AW922406.1|AW922406 DG1_18_E05.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 443
Score = 168 bits (85), Expect = 1e-039
Identities = 103/109 (94%)
Strand = Plus / Minus
Query: 356 ccatgtagtcgtggttgtatgacgagtccatctcgtggacgacgagcttcgtggccgtga 415
||||||||||||||||||| || ||||||||||||||||||||||||||| |||| ||||
Sbjct: 110 ccatgtagtcgtggttgtaggatgagtccatctcgtggacgacgagcttcttggcggtga 51
Query: 416 cccgcgcggcggtggcgttgttgaagaggaagacgccggcgttggcgta 464
| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 50 cgcgcgcggcggtggcgttgttgaagaggaacacgccggcgttggcgta 2
Score = 44.1 bits (22), Expect = 0.046
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 224 ccaaaatcatggcagggaaataagaaaatt 253
||||||| ||||||||||||||| ||||||
Sbjct: 267 ccaaaattatggcagggaaataacaaaatt 238
>gb|BF422199.1|BF422199 FM1_13_B02.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 403
Score = 159 bits (80), Expect = 1e-036
Identities = 98/104 (94%)
Strand = Plus / Minus
Query: 356 ccatgtagtcgtggttgtatgacgagtccatctcgtggacgacgagcttcgtggccgtga 415
||||||||||||||||||| || ||||||||||||||||||||||||||| |||||||||
Sbjct: 104 ccatgtagtcgtggttgtaggatgagtccatctcgtggacgacgagcttcttggccgtga 45
Query: 416 cccgcgcggcggtggcgttgttgaagaggaagacgccggcgttg 459
| || |||||||||||||||||||||||||| ||||||||||||
Sbjct: 44 cgcgtgcggcggtggcgttgttgaagaggaacacgccggcgttg 1
Score = 50.1 bits (25), Expect = 8e-004
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 224 ccaaaatcatggcagggaaataagaaaatttga 256
||||||| ||||||||||||||| |||||||||
Sbjct: 261 ccaaaattatggcagggaaataacaaaatttga 229
>gb|BE125476.1|BE125476 DG1_26_E05.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 204
Score = 155 bits (78), Expect = 2e-035
Identities = 107/117 (91%)
Strand = Plus / Minus
Query: 1738 tcggggagcgtggtggcggaccccgtccacacgccgttggtgtcgtaccactggtcgggc 1797
||||||||||||||| |||| || ||||| | |||||||||||||||||||||||| |||
Sbjct: 204 tcggggagcgtggtgccggagcctgtccagangccgttggtgtcgtaccactggtccggc 145
Query: 1798 accatggccagcgggaggcggcgccagcggatcaggtcgcgggacacggcgtggccc 1854
|||||||| ||||||||| |||||||| |||||||||||||||| ||||||||||||
Sbjct: 144 accatggctagcgggaggtggcgccagtggatcaggtcgcgggagacggcgtggccc 88
>gb|BZ348381.1|BZ348381 hp57a05.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone hp57a05 5', DNA sequence
Length = 532
Score = 117 bits (59), Expect = 4e-024
Identities = 74/79 (93%)
Strand = Plus / Minus
Query: 356 ccatgtagtcgtggttgtatgacgagtccatctcgtggacgacgagcttcgtggccgtga 415
||||||||||||||||||| || ||||||||||||||||||||||||||| |||| ||||
Sbjct: 81 ccatgtagtcgtggttgtaggatgagtccatctcgtggacgacgagcttcttggcggtga 22
Query: 416 cccgcgcggcggtggcgtt 434
| |||||||||||||||||
Sbjct: 21 cgcgcgcggcggtggcgtt 3
Score = 44.1 bits (22), Expect = 0.046
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 224 ccaaaatcatggcagggaaataagaaaatt 253
||||||| ||||||||||||||| ||||||
Sbjct: 238 ccaaaattatggcagggaaataacaaaatt 209
>gb|CW169907.1|CW169907 104_580_11154918_148_36511_029 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11154918, DNA
sequence
Length = 578
Score = 91.7 bits (46), Expect = 2e-016
Identities = 124/150 (82%)
Strand = Plus / Plus
Query: 1705 gtggagcccctgtagagcattgcgaggcggccgtcggggagcgtggtggcggaccccgtc 1764
||||||||| |||||||||| ||| |||||||| |||||| |||||||| |||| |
Sbjct: 373 gtggagcccgtgtagagcatgacgatccggccgtccgggagccgcgtggcggatcccgac 432
Query: 1765 cacacgccgttggtgtcgtaccactggtcgggcaccatggccagcgggaggcggcgccag 1824
|| |||||||||| ||||||| || || ||||||||||||||||| ||| | |||||
Sbjct: 433 cagacgccgttggcgtcgtacgggtgatccggcaccatggccagcggtaggtgcagccag 492
Query: 1825 cggatcaggtcgcgggacacggcgtggccc 1854
||| |||||||| |||||||||||||||
Sbjct: 493 tggaggaggtcgcgcgacacggcgtggccc 522
Score = 63.9 bits (32), Expect = 5e-008
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 1381 gggtagaagtcgatgcactcccacatgccggtgccg 1416
||||||||||||| ||||||||||||||||||||||
Sbjct: 37 gggtagaagtcgacgcactcccacatgccggtgccg 72
Score = 52.0 bits (26), Expect = 2e-004
Identities = 47/54 (87%)
Strand = Plus / Plus
Query: 1567 gggtcgcggaagtccttgggcccgatgcccgggggcgggtacagcaccgggttg 1620
||||||||||||||| | | |||||||||||| ||||| |||||||||||||
Sbjct: 235 gggtcgcggaagtccgtcgccccgatgcccggcggcggcaccagcaccgggttg 288
>gb|CW200492.1|CW200492 104_626_11184087_148_36870_064 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11184087, DNA
sequence
Length = 704
Score = 91.7 bits (46), Expect = 2e-016
Identities = 124/150 (82%)
Strand = Plus / Minus
Query: 1705 gtggagcccctgtagagcattgcgaggcggccgtcggggagcgtggtggcggaccccgtc 1764
||||||||| |||||||||| ||| |||||||| |||||| |||||||| |||| |
Sbjct: 278 gtggagcccgtgtagagcatgacgatccggccgtccgggagccgcgtggcggatcccgac 219
Query: 1765 cacacgccgttggtgtcgtaccactggtcgggcaccatggccagcgggaggcggcgccag 1824
|| |||||||||| ||||||| || || ||||||||||||||||| ||| | |||||
Sbjct: 218 cagacgccgttggcgtcgtacgggtgatccggcaccatggccagcggtaggtgcagccag 159
Query: 1825 cggatcaggtcgcgggacacggcgtggccc 1854
||| |||||||| |||||||||||||||
Sbjct: 158 tggaggaggtcgcgcgacacggcgtggccc 129
Score = 63.9 bits (32), Expect = 5e-008
Identities = 35/36 (97%)
Strand = Plus / Minus
Query: 1381 gggtagaagtcgatgcactcccacatgccggtgccg 1416
||||||||||||| ||||||||||||||||||||||
Sbjct: 614 gggtagaagtcgacgcactcccacatgccggtgccg 579
Score = 52.0 bits (26), Expect = 2e-004
Identities = 47/54 (87%)
Strand = Plus / Minus
Query: 1567 gggtcgcggaagtccttgggcccgatgcccgggggcgggtacagcaccgggttg 1620
||||||||||||||| | | |||||||||||| ||||| |||||||||||||
Sbjct: 416 gggtcgcggaagtccgtcgccccgatgcccggcggcggcaccagcaccgggttg 363
>gb|CW257599.1|CW257599 104_723_11227424_116_35161_030 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11227424, DNA
sequence
Length = 603
Score = 91.7 bits (46), Expect = 2e-016
Identities = 124/150 (82%)
Strand = Plus / Minus
Query: 1705 gtggagcccctgtagagcattgcgaggcggccgtcggggagcgtggtggcggaccccgtc 1764
||||||||| |||||||||| ||| |||||||| |||||| |||||||| |||| |
Sbjct: 290 gtggagcccgtgtagagcatgacgatccggccgtccgggagccgcgtggcggatcccgac 231
Query: 1765 cacacgccgttggtgtcgtaccactggtcgggcaccatggccagcgggaggcggcgccag 1824
|| |||||||||| ||||||| || || ||||||||||||||||| ||| | |||||
Sbjct: 230 cagacgccgttggcgtcgtacgggtgatccggcaccatggccagcggtaggtgcagccag 171
Query: 1825 cggatcaggtcgcgggacacggcgtggccc 1854
||| |||||||| |||||||||||||||
Sbjct: 170 tggaggaggtcgcgcgacacggcgtggccc 141
Score = 52.0 bits (26), Expect = 2e-004
Identities = 47/54 (87%)
Strand = Plus / Minus
Query: 1567 gggtcgcggaagtccttgggcccgatgcccgggggcgggtacagcaccgggttg 1620
||||||||||||||| | | |||||||||||| ||||| |||||||||||||
Sbjct: 428 gggtcgcggaagtccgtcgccccgatgcccggcggcggcaccagcaccgggttg 375
>gb|CW453451.1|CW453451 fsbb001f197h09f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f197h09, DNA
sequence
Length = 538
Score = 91.7 bits (46), Expect = 2e-016
Identities = 124/150 (82%)
Strand = Plus / Minus
Query: 1705 gtggagcccctgtagagcattgcgaggcggccgtcggggagcgtggtggcggaccccgtc 1764
||||||||| |||||||||| ||| |||||||| |||||| |||||||| |||| |
Sbjct: 350 gtggagcccgtgtagagcatgacgatccggccgtccgggagccgcgtggcggatcccgac 291
Query: 1765 cacacgccgttggtgtcgtaccactggtcgggcaccatggccagcgggaggcggcgccag 1824
|| |||||||||| ||||||| || || ||||||||||||||||| ||| | |||||
Sbjct: 290 cagacgccgttggcgtcgtacgggtgatccggcaccatggccagcggtaggtgcagccag 231
Query: 1825 cggatcaggtcgcgggacacggcgtggccc 1854
||| |||||||| |||||||||||||||
Sbjct: 230 tggaggaggtcgcgcgacacggcgtggccc 201
Score = 52.0 bits (26), Expect = 2e-004
Identities = 47/54 (87%)
Strand = Plus / Minus
Query: 1567 gggtcgcggaagtccttgggcccgatgcccgggggcgggtacagcaccgggttg 1620
||||||||||||||| | | |||||||||||| ||||| |||||||||||||
Sbjct: 488 gggtcgcggaagtccgtcgccccgatgcccggcggcggcaccagcaccgggttg 435
>gb|CW265997.1|CW265997 104_735_11232189_116_35271_087 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11232189, DNA
sequence
Length = 674
Score = 83.8 bits (42), Expect = 5e-014
Identities = 63/70 (90%)
Strand = Plus / Plus
Query: 1110 gcggcggcgcttggccgggtcgtagaacgtcttggacgcgtagaacttgccccagtcgta 1169
|||||||||||||||||| |||||||||| ||||||||||||||| | ||| |||||||
Sbjct: 223 gcggcggcgcttggccggatcgtagaacgacttggacgcgtagaagtcgccgtagtcgta 282
Query: 1170 gcgcaggccg 1179
||| ||||||
Sbjct: 283 gcggaggccg 292
>gb|CF484409.1|CF484409 POL1_25_D08.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_25_D08_A002 3', mRNA sequence
Length = 610
Score = 83.8 bits (42), Expect = 5e-014
Identities = 63/70 (90%)
Strand = Plus / Minus
Query: 1110 gcggcggcgcttggccgggtcgtagaacgtcttggacgcgtagaacttgccccagtcgta 1169
|||||||||||||||||| |||||||||| ||||||||||||||| | ||| |||||||
Sbjct: 196 gcggcggcgcttggccggatcgtagaacgacttggacgcgtagaagtcgccgtagtcgta 137
Query: 1170 gcgcaggccg 1179
||| ||||||
Sbjct: 136 gcggaggccg 127
>gb|CL159656.1|CL159656 104_349_10804417_116_31382_241 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10804417, DNA
sequence
Length = 659
Score = 81.8 bits (41), Expect = 2e-013
Identities = 56/61 (91%)
Strand = Plus / Plus
Query: 1117 cgcttggccgggtcgtagaacgtcttggacgcgtagaacttgccccagtcgtagcgcagg 1176
||||| |||||||||||||||||||||||||||||||| ||||| ||||||| ||||||
Sbjct: 317 cgcttcgccgggtcgtagaacgtcttggacgcgtagaagttgccgtagtcgtaccgcagg 376
Query: 1177 c 1177
|
Sbjct: 377 c 377
>gb|CW033209.1|CW033209 104_262_10501822_115_30362 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10501822, DNA
sequence
Length = 424
Score = 81.8 bits (41), Expect = 2e-013
Identities = 56/61 (91%)
Strand = Plus / Minus
Query: 1117 cgcttggccgggtcgtagaacgtcttggacgcgtagaacttgccccagtcgtagcgcagg 1176
||||| |||||||||||||||||||||||||||||||| ||||| ||||||| ||||||
Sbjct: 319 cgcttcgccgggtcgtagaacgtcttggacgcgtagaagttgccgtagtcgtaccgcagg 260
Query: 1177 c 1177
|
Sbjct: 259 c 259
>gb|CW276976.1|CW276976 104_750_11405776_148_35399_050 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11405776, DNA
sequence
Length = 530
Score = 81.8 bits (41), Expect = 2e-013
Identities = 56/61 (91%)
Strand = Plus / Plus
Query: 1117 cgcttggccgggtcgtagaacgtcttggacgcgtagaacttgccccagtcgtagcgcagg 1176
||||| |||||||||||||||||||||||||||||||| ||||| ||||||| ||||||
Sbjct: 253 cgcttcgccgggtcgtagaacgtcttggacgcgtagaagttgccgtagtcgtaccgcagg 312
Query: 1177 c 1177
|
Sbjct: 313 c 313
>gb|CW439175.1|CW439175 fsbb001f157d01k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f157d01, DNA
sequence
Length = 456
Score = 81.8 bits (41), Expect = 2e-013
Identities = 56/61 (91%)
Strand = Plus / Plus
Query: 1117 cgcttggccgggtcgtagaacgtcttggacgcgtagaacttgccccagtcgtagcgcagg 1176
||||| |||||||||||||||||||||||||||||||| ||||| ||||||| ||||||
Sbjct: 317 cgcttcgccgggtcgtagaacgtcttggacgcgtagaagttgccgtagtcgtaccgcagg 376
Query: 1177 c 1177
|
Sbjct: 377 c 377
>gb|CW050896.1|CW050896 104_291_10514924_114_30192 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10514924, DNA
sequence
Length = 308
Score = 79.8 bits (40), Expect = 8e-013
Identities = 55/60 (91%)
Strand = Plus / Minus
Query: 1117 cgcttggccgggtcgtagaacgtcttggacgcgtagaacttgccccagtcgtagcgcagg 1176
||||| |||||||||||||||||||||||||||||||| ||||| ||||||| ||||||
Sbjct: 291 cgcttcgccgggtcgtagaacgtcttggacgcgtagaagttgccgtagtcgtaccgcagg 232
>gb|CW257600.1|CW257600 104_723_11227424_148_35157_030 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11227424, DNA
sequence
Length = 678
Score = 69.9 bits (35), Expect = 8e-010
Identities = 89/107 (83%)
Strand = Plus / Plus
Query: 1084 gtctcgccgacccatccccacagcacgcggcggcgcttggccgggtcgtagaacgtcttg 1143
|||||||||||||| ||||| ||||| || ||||| | ||||||||||| ||||||
Sbjct: 177 gtctcgccgacccacccccagagcacccgccggcgaagcacggggtcgtagaaggtcttg 236
Query: 1144 gacgcgtagaacttgccccagtcgtagcgcaggccgatgccgacgtc 1190
||||||||| ||||||| ||||||| || || ||||| ||||||||
Sbjct: 237 gacgcgtagtacttgccgtagtcgtaccggagtccgatcccgacgtc 283
Score = 63.9 bits (32), Expect = 5e-008
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 1381 gggtagaagtcgatgcactcccacatgccggtgccg 1416
||||||||||||| ||||||||||||||||||||||
Sbjct: 453 gggtagaagtcgacgcactcccacatgccggtgccg 488
>gb|BE125263.1|BE125263 DG1_18_E05.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 151
Score = 67.9 bits (34), Expect = 3e-009
Identities = 53/60 (88%)
Strand = Plus / Minus
Query: 1795 ggcaccatggccagcgggaggcggcgccagcggatcaggtcgcgggacacggcgtggccc 1854
||||||||| | ||||||||| |||| ||| ||||||||| |||||| ||||||||||||
Sbjct: 147 ggcaccatgnctagcgggaggtggcgncagtggatcaggttgcgggagacggcgtggccc 88
>gb|CW200491.1|CW200491 104_626_11184087_116_36869_064 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11184087, DNA
sequence
Length = 705
Score = 65.9 bits (33), Expect = 1e-008
Identities = 57/65 (87%)
Strand = Plus / Plus
Query: 1126 gggtcgtagaacgtcttggacgcgtagaacttgccccagtcgtagcgcaggccgatgccg 1185
||||||||||| ||||||||||||||| ||||||| ||||||| || || ||||| |||
Sbjct: 40 gggtcgtagaaggtcttggacgcgtagtacttgccgtagtcgtaccggagtccgatcccg 99
Query: 1186 acgtc 1190
|||||
Sbjct: 100 acgtc 104
Score = 63.9 bits (32), Expect = 5e-008
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 1381 gggtagaagtcgatgcactcccacatgccggtgccg 1416
||||||||||||| ||||||||||||||||||||||
Sbjct: 274 gggtagaagtcgacgcactcccacatgccggtgccg 309
Score = 52.0 bits (26), Expect = 2e-004
Identities = 47/54 (87%)
Strand = Plus / Plus
Query: 1567 gggtcgcggaagtccttgggcccgatgcccgggggcgggtacagcaccgggttg 1620
||||||||||||||| | | |||||||||||| ||||| |||||||||||||
Sbjct: 472 gggtcgcggaagtccgtcgccccgatgcccggcggcggcaccagcaccgggttg 525
>gb|CF483263.1|CF483263 POL1_21_B02.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_21_B02_A002 3', mRNA sequence
Length = 533
Score = 65.9 bits (33), Expect = 1e-008
Identities = 42/45 (93%)
Strand = Plus / Minus
Query: 1110 gcggcggcgcttggccgggtcgtagaacgtcttggacgcgtagaa 1154
|||||||||||||||||| ||||| |||| |||||||||||||||
Sbjct: 228 gcggcggcgcttggccggatcgtaaaacgacttggacgcgtagaa 184
>gb|CW100262.1|CW100262 104_467_11004005_116_34388_021 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11004005, DNA
sequence
Length = 481
Score = 61.9 bits (31), Expect = 2e-007
Identities = 46/51 (90%)
Strand = Plus / Plus
Query: 1094 cccatccccacagcacgcggcggcgcttggccgggtcgtagaacgtcttgg 1144
|||| |||||||| | |||||||||||||||||| |||||||||| |||||
Sbjct: 431 cccagccccacaggatgcggcggcgcttggccggatcgtagaacgacttgg 481
>gb|CW199054.1|CW199054 104_624_11183306_116_36856_015 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11183306, DNA
sequence
Length = 642
Score = 58.0 bits (29), Expect = 3e-006
Identities = 47/53 (88%)
Strand = Plus / Plus
Query: 1117 cgcttggccgggtcgtagaacgtcttggacgcgtagaacttgccccagtcgta 1169
||||| ||||| || ||||||||||||||||||||||| ||||| |||||||
Sbjct: 289 cgcttcgccggatcatagaacgtcttggacgcgtagaagttgccgtagtcgta 341
>gb|BE595814.1|BE595814 PI1_54_D08.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 474
Score = 58.0 bits (29), Expect = 3e-006
Identities = 47/53 (88%)
Strand = Plus / Minus
Query: 1117 cgcttggccgggtcgtagaacgtcttggacgcgtagaacttgccccagtcgta 1169
||||| ||||| || ||||||||||||||||||||||| ||||| |||||||
Sbjct: 152 cgcttcgccggatcatagaacgtcttggacgcgtagaagttgccgtagtcgta 100
>gb|CN135740.1|CN135740 OX1_38_E07.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_38_E07_A002 5', mRNA sequence
Length = 759
Score = 58.0 bits (29), Expect = 3e-006
Identities = 47/53 (88%)
Strand = Plus / Minus
Query: 1117 cgcttggccgggtcgtagaacgtcttggacgcgtagaacttgccccagtcgta 1169
||||| ||||| || ||||||||||||||||||||||| ||||| |||||||
Sbjct: 540 cgcttcgccggatcatagaacgtcttggacgcgtagaagttgccgtagtcgta 488
>gb|CW400046.1|CW400046 fsbb001f090c21f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f090c21, DNA
sequence
Length = 539
Score = 56.0 bits (28), Expect = 1e-005
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 991 aggttgctgcccgtcttggtgtccaggagcaccgtc 1026
||||||||||||||||| ||||||||||| ||||||
Sbjct: 535 aggttgctgcccgtcttcgtgtccaggaggaccgtc 500
>gb|CW070613.1|CW070613 104_321_10526871_1_30090 Sorghum methylation filtered library (LibID:
104) Sorghum bicolor genomic clone 10526871, DNA sequence
Length = 593
Score = 52.0 bits (26), Expect = 2e-004
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 1132 tagaacgtcttggacgcgtagaacttgccccagtcgta 1169
||||||||||||||||||||||| ||||| |||||||
Sbjct: 590 tagaacgtcttggacgcgtagaagttgccgtagtcgta 553
>gb|CW298321.1|CW298321 104_780_11462518_116_35647_081 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11462518, DNA
sequence
Length = 646
Score = 48.1 bits (24), Expect = 0.003
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 1134 gaacgtcttggacgcgtagaacttgccccagtcgta 1169
||||||||||||||||||||| ||||| |||||||
Sbjct: 375 gaacgtcttggacgcgtagaagttgccgtagtcgta 410
>gb|CW394782.1|CW394782 fsbb001f082i17f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f082i17, DNA
sequence
Length = 763
Score = 48.1 bits (24), Expect = 0.003
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 1134 gaacgtcttggacgcgtagaacttgccccagtcgta 1169
||||||||||||||||||||| ||||| |||||||
Sbjct: 291 gaacgtcttggacgcgtagaagttgccgtagtcgta 256
>gb|CW130478.1|CW130478 104_513_11115136_116_34781_064 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11115136, DNA
sequence
Length = 611
Score = 46.1 bits (23), Expect = 0.012
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 1117 cgcttggccgggtcgtagaacgtcttggacgcgta 1151
||||| ||||| || ||||||||||||||||||||
Sbjct: 35 cgcttcgccggatcatagaacgtcttggacgcgta 1
>gb|CL151746.1|CL151746 104_334_10779469_114_31361_253 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10779469, DNA
sequence
Length = 749
Score = 44.1 bits (22), Expect = 0.046
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 957 cagcgtctccacctcctccacgggccactg 986
||||||||| | ||||||||||||||||||
Sbjct: 376 cagcgtctcgatctcctccacgggccactg 347
>gb|CL151747.1|CL151747 104_334_10779469_116_31362_253 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10779469, DNA
sequence
Length = 723
Score = 44.1 bits (22), Expect = 0.046
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 957 cagcgtctccacctcctccacgggccactg 986
||||||||| | ||||||||||||||||||
Sbjct: 551 cagcgtctcgatctcctccacgggccactg 580
>gb|CW042089.1|CW042089 104_275_10506931_115_30285 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10506931, DNA
sequence
Length = 613
Score = 44.1 bits (22), Expect = 0.046
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 957 cagcgtctccacctcctccacgggccactg 986
||||||||| | ||||||||||||||||||
Sbjct: 577 cagcgtctcgatctcctccacgggccactg 606
>gb|CW473333.1|CW473333 fsbb001f228k15k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f228k15, DNA
sequence
Length = 511
Score = 44.1 bits (22), Expect = 0.046
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 957 cagcgtctccacctcctccacgggccactg 986
||||||||| | ||||||||||||||||||
Sbjct: 415 cagcgtctcgatctcctccacgggccactg 444
>gb|BZ330645.1|BZ330645 hv94c11.b1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone hv94c11 5', DNA sequence
Length = 443
Score = 42.1 bits (21), Expect = 0.18
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 713 gctcgcggcggaggcggcggt 733
|||||||||||||||||||||
Sbjct: 108 gctcgcggcggaggcggcggt 128
>gb|BZ330718.1|BZ330718 hv95c11.b1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone hv95c11 5', DNA sequence
Length = 492
Score = 42.1 bits (21), Expect = 0.18
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 713 gctcgcggcggaggcggcggt 733
|||||||||||||||||||||
Sbjct: 107 gctcgcggcggaggcggcggt 127
>gb|BZ330733.1|BZ330733 hv95d11.b1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone hv95d11 5', DNA sequence
Length = 493
Score = 42.1 bits (21), Expect = 0.18
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 713 gctcgcggcggaggcggcggt 733
|||||||||||||||||||||
Sbjct: 108 gctcgcggcggaggcggcggt 128
>gb|BZ330742.1|BZ330742 hv95e11.b1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone hv95e11 5', DNA sequence
Length = 460
Score = 42.1 bits (21), Expect = 0.18
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 713 gctcgcggcggaggcggcggt 733
|||||||||||||||||||||
Sbjct: 109 gctcgcggcggaggcggcggt 129
>gb|BZ346752.1|BZ346752 hv83h09.b1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone hv83h09 5', DNA sequence
Length = 543
Score = 42.1 bits (21), Expect = 0.18
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 713 gctcgcggcggaggcggcggt 733
|||||||||||||||||||||
Sbjct: 91 gctcgcggcggaggcggcggt 111
>gb|CW133234.1|CW133234 104_516_11116649_148_34802_065 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11116649, DNA
sequence
Length = 668
Score = 42.1 bits (21), Expect = 0.18
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 716 cgcggcggaggcggcggtcgg 736
|||||||||||||||||||||
Sbjct: 179 cgcggcggaggcggcggtcgg 159
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 699,011
Number of Sequences: 832831
Number of extensions: 699011
Number of successful extensions: 215700
Number of sequences better than 0.5: 58
Number of HSP's better than 0.5 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 215536
Number of HSP's gapped (non-prelim): 147
length of query: 1865
length of database: 491,359,669
effective HSP length: 20
effective length of query: 1845
effective length of database: 474,703,049
effective search space: 875827125405
effective search space used: 875827125405
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)