BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3829501.2.1
(1141 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW307372.1|CW307372 104_795_11468105_148_35736_073 Sorgh... 835 0.0
gb|CW388025.1|CW388025 fsbb001f072j20k0 Sorghum methylation... 789 0.0
gb|CW206617.1|CW206617 104_635_11187687_116_36961_058 Sorgh... 728 0.0
gb|BE598085.1|BE598085 PI1_65_E11.b1_A002 Pathogen induced ... 708 0.0
gb|BE597800.1|BE597800 PI1_65_E11.g1_A002 Pathogen induced ... 662 0.0
gb|BZ338038.1|BZ338038 ia92e12.b1 WGS-SbicolorF (JM107 adap... 636 e-180
gb|CW488277.1|CW488277 fsbb001f254j12f0 Sorghum methylation... 609 e-172
gb|CW388024.1|CW388024 fsbb001f072j20f0 Sorghum methylation... 553 e-155
gb|BE367523.1|BE367523 PI1_8_E06.g1_A002 Pathogen induced 1... 492 e-137
gb|CW276618.1|CW276618 104_750_11405587_148_35398_074 Sorgh... 482 e-134
gb|CW470070.1|CW470070 fsbb001f223b16f0 Sorghum methylation... 458 e-127
gb|CF760116.1|CF760116 DSAF1_55_F11.b1_A011 Drought-stresse... 444 e-123
gb|CW206618.1|CW206618 104_635_11187687_148_36965_058 Sorgh... 438 e-121
gb|BE366378.1|BE366378 PI1_32_H10.g1_A002 Pathogen induced ... 367 2e-099
gb|CW307371.1|CW307371 104_795_11468105_116_35728_073 Sorgh... 299 3e-079
gb|BE594394.1|BE594394 PI1_32_H10.b2_A002 Pathogen induced ... 291 7e-077
gb|CL186365.1|CL186365 104_401_10900160_116_32413_030 Sorgh... 256 4e-066
gb|BZ338039.1|BZ338039 ia92e12.g1 WGS-SbicolorF (JM107 adap... 163 4e-038
gb|CW438619.1|CW438619 fsbb001f156f15f0 Sorghum methylation... 155 1e-035
gb|CW487999.1|CW487999 fsbb001f254c13k0 Sorghum methylation... 151 2e-034
gb|CN129927.1|CN129927 RHOH1_38_F07.b1_A002 Acid- and alkal... 121 1e-025
gb|CN130014.1|CN130014 RHOH1_38_F07.g1_A002 Acid- and alkal... 121 1e-025
gb|CW266083.1|CW266083 104_735_11232237_148_35267_085 Sorgh... 117 2e-024
gb|BE358858.1|BE358858 DG1_32_F07.g1_A002 Dark Grown 1 (DG1... 117 2e-024
gb|CD429983.1|CD429983 ETH1_16_A10.g1_A002 Ethylene-treated... 115 9e-024
gb|CW282926.1|CW282926 104_759_11408975_148_35475_094 Sorgh... 107 2e-021
gb|CW402098.1|CW402098 fsbb001f093d20k0 Sorghum methylation... 96 9e-018
gb|BE597906.1|BE597906 PI1_66_H02.g1_A002 Pathogen induced ... 88 2e-015
gb|BG102665.1|BG102665 RHIZ2_35_G08.g1_A003 Rhizome2 (RHIZ2... 80 5e-013
gb|CW470071.1|CW470071 fsbb001f223b16k0 Sorghum methylation... 78 2e-012
gb|CW088904.1|CW088904 104_434_10948392_114_32602_096 Sorgh... 72 1e-010
gb|CW098317.1|CW098317 104_464_11002941_148_34366_083 Sorgh... 72 1e-010
gb|CW231901.1|CW231901 104_681_11211372_148_37350_042 Sorgh... 72 1e-010
gb|CW285685.1|CW285685 104_763_11410466_148_35506_013 Sorgh... 72 1e-010
gb|CW489486.1|CW489486 fsbb001f274h04f0 Sorghum methylation... 72 1e-010
gb|AW680953.1|AW680953 WS1_9_A06.b1_A002 Water-stressed 1 (... 72 1e-010
gb|AW746695.1|AW746695 WS1_54_E02.g1_A002 Water-stressed 1 ... 72 1e-010
gb|AW922735.1|AW922735 DG1_45_B06.g1_A002 Dark Grown 1 (DG1... 72 1e-010
gb|AW924422.1|AW924422 WS1_69_C06.b1_A002 Water-stressed 1 ... 72 1e-010
gb|BE357811.1|BE357811 DG1_22_D10.g1_A002 Dark Grown 1 (DG1... 72 1e-010
gb|BE363714.1|BE363714 WS1_69_C06.g2_A002 Water-stressed 1 ... 72 1e-010
gb|BG049497.1|BG049497 OV1_20_G04.g1_A002 Ovary 1 (OV1) Sor... 72 1e-010
gb|BG101749.1|BG101749 EM1_5_G10.b1_A002 Embryo 1 (EM1) Sor... 72 1e-010
gb|BG556500.1|BG556500 EM1_37_H12.g1_A002 Embryo 1 (EM1) So... 72 1e-010
gb|CD220455.1|CD220455 CCC1_67_F06.b1_A007 Callus culture/c... 72 1e-010
gb|CD221392.1|CD221392 CCC1_54_C04.b1_A007 Callus culture/c... 72 1e-010
gb|CD221556.1|CD221556 CCC1_55_F09.g1_A007 Callus culture/c... 72 1e-010
gb|CD221995.1|CD221995 CCC1_1_C09.b1_A007 Callus culture/ce... 72 1e-010
gb|CD222353.1|CD222353 CCC1_21_F09.b1_A007 Callus culture/c... 72 1e-010
gb|CD222883.1|CD222883 CCC1_24_C04.g1_A007 Callus culture/c... 72 1e-010
gb|CD222930.1|CD222930 CCC1_25_F06.b1_A007 Callus culture/c... 72 1e-010
gb|CD223041.1|CD223041 CCC1_25_F06.g1_A007 Callus culture/c... 72 1e-010
gb|CD223234.1|CD223234 CCC1_26_D09.g1_A007 Callus culture/c... 72 1e-010
gb|CD223269.1|CD223269 CCC1_27_E04.b1_A007 Callus culture/c... 72 1e-010
gb|CD223379.1|CD223379 CCC1_27_E04.g1_A007 Callus culture/c... 72 1e-010
gb|CD223848.1|CD223848 CCC1_30_F03.g1_A007 Callus culture/c... 72 1e-010
gb|CD224145.1|CD224145 CCC1_32_A09.b1_A007 Callus culture/c... 72 1e-010
gb|CD225586.1|CD225586 CCC1_40_H10.b1_A007 Callus culture/c... 72 1e-010
gb|CD225895.1|CD225895 CCC1_42_B03.b1_A007 Callus culture/c... 72 1e-010
gb|CD226496.1|CD226496 CCC1_46_E08.b1_A007 Callus culture/c... 72 1e-010
gb|CD226602.1|CD226602 CCC1_46_E08.g1_A007 Callus culture/c... 72 1e-010
gb|CD226631.1|CD226631 CCC1_47_H05.b1_A007 Callus culture/c... 72 1e-010
gb|CD226725.1|CD226725 CCC1_47_H05.g1_A007 Callus culture/c... 72 1e-010
gb|CD227859.1|CD227859 CCC1_56_F04.b1_A007 Callus culture/c... 72 1e-010
gb|CD228687.1|CD228687 CCC1_9_D03.b1_A007 Callus culture/ce... 72 1e-010
gb|CD229697.1|CD229697 CCC1_18_D08.g1_A007 Callus culture/c... 72 1e-010
gb|CD464022.1|CD464022 ETH1_48_G10.b1_A002 Ethylene-treated... 72 1e-010
gb|CD464127.1|CD464127 ETH1_48_G10.g1_A002 Ethylene-treated... 72 1e-010
gb|AF402938.1|AF402938 Sorghum arundinaceum chitinase-B gen... 72 1e-010
gb|AY047607.1| Sorghum bicolor chitinase-B mRNA, partial cds 72 1e-010
gb|AY047608.1| Sorghum bicolor chitinase-B1 mRNA, complete cds 72 1e-010
gb|CW263590.1|CW263590 104_731_11230799_148_35217_082 Sorgh... 70 5e-010
gb|BG049053.1|BG049053 OV1_22_F09.g1_A002 Ovary 1 (OV1) Sor... 68 2e-009
gb|CW150339.1|CW150339 104_549_11142974_116_36302_051 Sorgh... 66 8e-009
gb|CW150340.1|CW150340 104_549_11142974_148_36301_051 Sorgh... 66 8e-009
gb|CW318996.1|CW318996 104_811_11474252_116_35881_074 Sorgh... 66 8e-009
gb|CW357974.1|CW357974 fsbb001f024n22k0 Sorghum methylation... 66 8e-009
gb|AW922776.1|AW922776 DG1_46_C01.g1_A002 Dark Grown 1 (DG1... 66 8e-009
gb|AW924229.1|AW924229 WS1_51_H04.b1_A002 Water-stressed 1 ... 66 8e-009
gb|BE359997.1|BE359997 DG1_60_H07.g2_A002 Dark Grown 1 (DG1... 66 8e-009
gb|CD226002.1|CD226002 CCC1_42_B03.g1_A007 Callus culture/c... 66 8e-009
gb|CD423411.1|CD423411 SA1_23_C09.b1_A002 Salicylic acid-tr... 66 8e-009
gb|CD423525.1|CD423525 SA1_23_C09.g1_A002 Salicylic acid-tr... 66 8e-009
gb|CN134927.1|CN134927 OX1_29_A09.g1_A002 Oxidatively-stres... 66 8e-009
gb|CN134928.1|CN134928 OX1_29_A10.g1_A002 Oxidatively-stres... 66 8e-009
gb|CN151360.1|CN151360 WOUND1_75_B02.b1_A002 Wounded leaves... 66 8e-009
gb|CN151443.1|CN151443 WOUND1_75_B02.g1_A002 Wounded leaves... 66 8e-009
gb|CX610007.1|CX610007 ANR1_16_C10.b1_A002 Anaerobic roots ... 66 8e-009
gb|CX610094.1|CX610094 ANR1_16_C10.g1_A002 Anaerobic roots ... 66 8e-009
gb|CX613448.1|CX613448 GABR1_8_E12.b1_A002 GA- or brassinol... 66 8e-009
gb|CX613534.1|CX613534 GABR1_8_E12.g1_A002 GA- or brassinol... 66 8e-009
gb|CX616381.1|CX616381 GABR1_27_C09.g1_A002 GA- or brassino... 66 8e-009
gb|CW117036.1|CW117036 104_493_11107443_148_34610_016 Sorgh... 64 3e-008
gb|CW275250.1|CW275250 104_748_11404861_148_35382_055 Sorgh... 64 3e-008
gb|CW448428.1|CW448428 fsbb001f182a11k0 Sorghum methylation... 64 3e-008
gb|CW493211.1|CW493211 fsbb001f283n22k0 Sorghum methylation... 64 3e-008
gb|CD228140.1|CD228140 CCC1_6_E03.b1_A007 Callus culture/ce... 64 3e-008
gb|CD229365.1|CD229365 CCC1_14_D09.g1_A007 Callus culture/c... 64 3e-008
gb|CD229477.1|CD229477 CCC1_16_C07.b1_A007 Callus culture/c... 64 3e-008
gb|CD229563.1|CD229563 CCC1_16_C07.g1_A007 Callus culture/c... 64 3e-008
gb|CL161206.1|CL161206 104_352_10805558_116_31827_230 Sorgh... 62 1e-007
gb|CW430429.1|CW430429 fsbb001f144c05k0 Sorghum methylation... 62 1e-007
gb|AW745790.1|AW745790 WS1_37_H11.b1_A002 Water-stressed 1 ... 62 1e-007
gb|AW922596.1|AW922596 DG1_46_C01.b1_A002 Dark Grown 1 (DG1... 62 1e-007
gb|BE358239.1|BE358239 DG1_26_D03.b2_A002 Dark Grown 1 (DG1... 62 1e-007
gb|BG464063.1|BG464063 EM1_69_B11.b1_A002 Embryo 1 (EM1) So... 62 1e-007
gb|CD220480.1|CD220480 CCC1_67_F06.g1_A007 Callus culture/c... 62 1e-007
gb|CD220708.1|CD220708 CCC1_68_C10.g1_A007 Callus culture/c... 62 1e-007
gb|CD222029.1|CD222029 CCC1_1_C09.g1_A007 Callus culture/ce... 62 1e-007
gb|CD226858.1|CD226858 CCC1_48_E04.g1_A007 Callus culture/c... 62 1e-007
gb|CD227763.1|CD227763 CCC1_53_C09.g1_A007 Callus culture/c... 62 1e-007
gb|CF486513.1|CF486513 POL1_38_D07.b1_A002 Pollen Sorghum b... 62 1e-007
gb|CN130235.1|CN130235 RHOH1_40_D04.b1_A002 Acid- and alkal... 62 1e-007
gb|CN130309.1|CN130309 RHOH1_40_D04.g1_A002 Acid- and alkal... 62 1e-007
gb|CN137269.1|CN137269 OX1_56_F03.b1_A002 Oxidatively-stres... 62 1e-007
gb|CN137353.1|CN137353 OX1_56_F03.g1_A002 Oxidatively-stres... 62 1e-007
gb|AF402939.1|AF402939 Sorghum halepense chitinase-B gene, ... 62 1e-007
gb|DQ190422.1| Sorghum halepense isolate hal3 chitinase-B (... 62 1e-007
gb|BE357733.1|BE357733 DG1_22_D10.b1_A002 Dark Grown 1 (DG1... 60 5e-007
gb|CW039394.1|CW039394 104_272_10505475_115_30390 Sorghum m... 58 2e-006
gb|CW110423.1|CW110423 104_483_11103696_148_34524_094 Sorgh... 58 2e-006
gb|CW159280.1|CW159280 104_565_11149276_148_36409_010 Sorgh... 58 2e-006
gb|CW204755.1|CW204755 104_632_11186715_116_37060_002 Sorgh... 58 2e-006
gb|CW204756.1|CW204756 104_632_11186715_148_36922_002 Sorgh... 58 2e-006
gb|CW265113.1|CW265113 104_734_11231683_116_35257_076 Sorgh... 58 2e-006
gb|CW265114.1|CW265114 104_734_11231683_148_35261_076 Sorgh... 58 2e-006
gb|AW746206.1|AW746206 WS1_40_B10.b1_A002 Water-stressed 1 ... 58 2e-006
gb|BG649146.1|BG649146 EM1_56_F01.b1_A002 Embryo 1 (EM1) So... 58 2e-006
gb|BE362915.2|BE362915 DG1_90_E12.g1_A002 Dark Grown 1 (DG1... 58 2e-006
gb|CD220677.1|CD220677 CCC1_68_C11.g1_A007 Callus culture/c... 58 2e-006
gb|CD223669.1|CD223669 CCC1_29_G02.g1_A007 Callus culture/c... 58 2e-006
gb|CD224981.1|CD224981 CCC1_37_D02.g1_A007 Callus culture/c... 58 2e-006
gb|CD225687.1|CD225687 CCC1_40_B05.g1_A007 Callus culture/c... 58 2e-006
gb|CD228252.1|CD228252 CCC1_6_E03.g1_A007 Callus culture/ce... 58 2e-006
gb|CD228767.1|CD228767 CCC1_9_D11.g1_A007 Callus culture/ce... 58 2e-006
gb|CD229825.1|CD229825 CCC1_19_F11.g1_A007 Callus culture/c... 58 2e-006
gb|CD462568.1|CD462568 ETH1_38_G06.g1_A002 Ethylene-treated... 58 2e-006
gb|AY048375.1| Sorghum bicolor chitinase-B gene, partial cds 58 2e-006
gb|CW430428.1|CW430428 fsbb001f144c05f0 Sorghum methylation... 56 7e-006
gb|BE598196.1|BE598196 PI1_66_H02.b1_A002 Pathogen induced ... 56 7e-006
gb|CD220272.1|CD220272 CCC1_66_G11.b1_A007 Callus culture/c... 56 7e-006
gb|CF480059.1|CF480059 POL1_63_B05.g1_A002 Pollen Sorghum b... 56 7e-006
gb|CF486597.1|CF486597 POL1_38_D07.g1_A002 Pollen Sorghum b... 56 7e-006
gb|CN130255.1|CN130255 RHOH1_40_F08.b1_A002 Acid- and alkal... 56 7e-006
gb|CN130329.1|CN130329 RHOH1_40_F08.g1_A002 Acid- and alkal... 56 7e-006
gb|CL160722.1|CL160722 104_351_10805186_116_31825_242 Sorgh... 54 3e-005
gb|CL161205.1|CL161205 104_352_10805558_114_31826_230 Sorgh... 54 3e-005
gb|CW302450.1|CW302450 104_786_11464725_116_35662_085 Sorgh... 54 3e-005
gb|CW365833.1|CW365833 fsbb001f038i18k0 Sorghum methylation... 54 3e-005
gb|CW437319.1|CW437319 fsbb001f154g03k0 Sorghum methylation... 54 3e-005
gb|AW746018.1|AW746018 WS1_38_H11.g1_A002 Water-stressed 1 ... 54 3e-005
gb|BE363379.1|BE363379 WS1_62_C05.g1_A002 Water-stressed 1 ... 54 3e-005
gb|BE918012.1|BE918012 OV1_8_G11.g1_A002 Ovary 1 (OV1) Sorg... 54 3e-005
gb|BE918591.1|BE918591 OV1_8_G11.b1_A002 Ovary 1 (OV1) Sorg... 54 3e-005
gb|CD222193.1|CD222193 CCC1_2_C04.g1_A007 Callus culture/ce... 54 3e-005
gb|CD222724.1|CD222724 CCC1_23_G10.g1_A007 Callus culture/c... 54 3e-005
gb|CD223183.1|CD223183 CCC1_26_G01.g1_A007 Callus culture/c... 54 3e-005
gb|CD224094.1|CD224094 CCC1_32_C12.b1_A007 Callus culture/c... 54 3e-005
gb|CD226332.1|CD226332 CCC1_45_F08.b1_A007 Callus culture/c... 54 3e-005
gb|CD226424.1|CD226424 CCC1_45_F08.g1_A007 Callus culture/c... 54 3e-005
gb|CD226807.1|CD226807 CCC1_48_C11.b1_A007 Callus culture/c... 54 3e-005
gb|CD227445.1|CD227445 CCC1_51_E06.g1_A007 Callus culture/c... 54 3e-005
gb|CD228493.1|CD228493 CCC1_8_E11.b1_A007 Callus culture/ce... 54 3e-005
gb|CD228603.1|CD228603 CCC1_8_E11.g1_A007 Callus culture/ce... 54 3e-005
gb|CD229356.1|CD229356 CCC1_14_A10.g1_A007 Callus culture/c... 54 3e-005
gb|CD229358.1|CD229358 CCC1_14_E11.g1_A007 Callus culture/c... 54 3e-005
gb|CD432114.1|CD432114 ETH1_26_H07.b1_A002 Ethylene-treated... 54 3e-005
gb|CD432211.1|CD432211 ETH1_26_H07.g1_A002 Ethylene-treated... 54 3e-005
gb|CN125314.1|CN125314 RHOH1_10_G12.b1_A002 Acid- and alkal... 54 3e-005
gb|CN132942.1|CN132942 OX1_9_D11.b1_A002 Oxidatively-stress... 54 3e-005
gb|CN133023.1|CN133023 OX1_9_D11.g1_A002 Oxidatively-stress... 54 3e-005
gb|DQ190423.1| Sorghum halepense isolate hal4 chitinase-B (... 54 3e-005
gb|DQ190424.1| Sorghum halepense isolate hal6 chitinase-B (... 54 3e-005
gb|BG464391.1|BG464391 EM1_69_B11.g1_A002 Embryo 1 (EM1) So... 52 1e-004
gb|CD222692.1|CD222692 CCC1_23_G09.g1_A007 Callus culture/c... 52 1e-004
gb|CD229903.1|CD229903 CCC1_20_C03.g1_A007 Callus culture/c... 52 1e-004
gb|CW069060.1|CW069060 104_318_10525580_1_30095 Sorghum met... 50 5e-004
gb|CD220381.1|CD220381 CCC1_66_G11.g1_A007 Callus culture/c... 50 5e-004
gb|CD220668.1|CD220668 CCC1_68_B04.g1_A007 Callus culture/c... 50 5e-004
gb|CD228270.1|CD228270 CCC1_6_F02.g1_A007 Callus culture/ce... 50 5e-004
gb|BE366298.1|BE366298 PI1_32_H10.b1_A002 Pathogen induced ... 48 0.002
gb|BG463695.1|BG463695 EM1_50_H02.g1_A002 Embryo 1 (EM1) So... 48 0.002
gb|CN135214.1|CN135214 OX1_31_G02.b1_A002 Oxidatively-stres... 48 0.002
gb|CN135290.1|CN135290 OX1_31_G02.g1_A002 Oxidatively-stres... 48 0.002
gb|CF675624.1|CF675624 CHTN3 Subtractive cDNA library from ... 48 0.002
gb|CW030154.1|CW030154 104_258_10500091_114_30403 Sorghum m... 46 0.007
gb|CW065719.1|CW065719 104_312_10523301_114_30129 Sorghum m... 46 0.007
gb|CW066077.1|CW066077 104_313_10523499_114_30148 Sorghum m... 46 0.007
gb|AW745819.1|AW745819 WS1_37_H11.g1_A002 Water-stressed 1 ... 46 0.007
gb|CD432032.1|CD432032 ETH1_12_F04.g1_A002 Ethylene-treated... 46 0.007
gb|CW454488.1|CW454488 fsbb001f198p08f0 Sorghum methylation... 44 0.028
gb|AW672289.1|AW672289 LG1_358_A05.b1_A002 Light Grown 1 (L... 44 0.028
gb|CD229267.1|CD229267 CCC1_14_D09.b1_A007 Callus culture/c... 44 0.028
gb|CW402097.1|CW402097 fsbb001f093d20f0 Sorghum methylation... 42 0.11
gb|CW162496.1|CW162496 104_569_11150972_116_36437_068 Sorgh... 40 0.44
gb|CW346889.1|CW346889 fsbb001f006j06f0 Sorghum methylation... 40 0.44
gb|CW346890.1|CW346890 fsbb001f006j06k0 Sorghum methylation... 40 0.44
gb|CW356592.1|CW356592 fsbb001f021m03k0 Sorghum methylation... 40 0.44
gb|CW362042.1|CW362042 fsbb001f030o20k0 Sorghum methylation... 40 0.44
gb|CW495540.1|CW495540 fsbb001f287f17k0 Sorghum methylation... 40 0.44
gb|CD228772.1|CD228772 CCC1_9_D03.g1_A007 Callus culture/ce... 40 0.44
>gb|CW307372.1|CW307372 104_795_11468105_148_35736_073 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11468105, DNA
sequence
Length = 603
Score = 835 bits (421), Expect = 0.0
Identities = 558/603 (92%), Gaps = 3/603 (0%)
Strand = Plus / Minus
Query: 160 gggcgtctggttggcgcagtccaagttgtcgccgtagctgaccccaagcaagtcacagta 219
|||| |||||| ||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct: 603 gggcatctggtgggcgcagtccaagttgtcgccatagctgaccccaagcaagtcgcagta 544
Query: 220 tcgtttgtagaagccgatccggtcggcgacgcggctgtcagcgccatggccgcactcgag 279
|| |||||||| ||||||| ||| ||||||||| | || ||||||||||||||||||||
Sbjct: 543 gcgcttgtagaacccgatcctgtccgcgacgcgggtatcggcgccatggccgcactcgag 484
Query: 280 gccgccgttgatgatgttggtgacgacgccgtagcccggcagcctgccggcggccgtgtc 339
|||||||||||||||||||||||||||||| || ||||||| ||| || ||||| ||||
Sbjct: 483 gccgccgttgatgatgttggtgacgacgccataccccggcaacctccccgcggcgatgtc 424
Query: 340 agccgcggagggcgtccactgccccgtcatgacgtcgtggcacgacggcttgggcgactg 399
||| || || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 agctgccgacggcgtccactgccccgtcatgacgtcgtggcacgacggcttgggcgactg 364
Query: 400 cggcgtcatccagaaccagacggcggtctcgaacgacacggtggggtcggtggccaccag 459
|||||||||||||||||| || |||||||||||||| ||||||| ||||| ||| || ||
Sbjct: 363 cggcgtcatccagaaccacaccgcggtctcgaacgagacggtggcgtcggcggcgacaag 304
Query: 460 gtccgggttggcgaggatgccggcgccgatggcctggccggcgggcccgtagttgtagtt 519
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 303 gtccgggttggcgaggatgccggcgccgatggcctggccggcggggccgtagttgtagtt 244
Query: 520 gtaggatatctggatgggcccgcggccgtagtacttcttccccgcggcgcacggccactg 579
|||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct: 243 gtaggagatctggatgggtccgcggccgtagtacttcttcccggcggcgcacggccactg 184
Query: 580 ggcgctgggctcgcagtagtccggccccgacgcgccgccctgctcctccttgaagcagta 639
| |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct: 183 tgtgctgggctcgcagtagtccggccccgacgcgccgtccttctcctccttgaagcagta 124
Query: 640 gccccaggcgtagggcccgtcgggcgccgtcgcccacccgcccgtcgtctcgtgggacgt 699
|||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 123 gccccaggcgtaggcgccgtcgggcgccgtcgcccacccgcccgtcgtctcgtgcgacgt 64
Query: 700 ctgcgccaggaacgccgccagctcgcgcttctgcacgtcggg---cgcccccgtggtgcc 756
||||||||||||||||||||||||||||||||| |||||||| ||||||||| |||||
Sbjct: 63 ctgcgccaggaacgccgccagctcgcgcttctggacgtcggggctcgcccccgtcgtgcc 4
Query: 757 gaa 759
|||
Sbjct: 3 gaa 1
>gb|CW388025.1|CW388025 fsbb001f072j20k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f072j20, DNA
sequence
Length = 740
Score = 789 bits (398), Expect = 0.0
Identities = 613/681 (90%), Gaps = 9/681 (1%)
Strand = Plus / Plus
Query: 154 gttgaagggcgtctggttggcgcagtccaagttgtcgccgtagctgaccccaagcaagtc 213
|||||| ||| |||||||||||||||||| ||||| ||||||||| ||||||||||||||
Sbjct: 48 gttgaatggcctctggttggcgcagtccacgttgttgccgtagctaaccccaagcaagtc 107
Query: 214 acagtatcgtttgtagaagccgatccggtcggcgacgcggctgtcagcgccatggccgca 273
||||| || |||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct: 108 gcagtagcgcttgtagaagccgatccggtcggcgacgcggctatcggcgccatggccgca 167
Query: 274 ctcgaggccgccgttgatgatgttggtgacgacgccgtagcccggcagcctgccggcggc 333
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct: 168 ctcgaggccgccgttgatgatgttggtgacgacgccataccccggcagcctgccggcggc 227
Query: 334 cgtgtcagccgcggagggcgtccactgccccgtcatgacgtcgtggcacgacggcttggg 393
||||| || | || |||| |||||||||||| | |||| |||||||||||||||||||
Sbjct: 228 ggtgtcggcaggcgacggcgcccactgccccgtgacgacggcgtggcacgacggcttggg 287
Query: 394 cgactgcggcgtcatccagaaccagacggcggtctcgaacgacacggtggggtcggtggc 453
|| ||||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||
Sbjct: 288 cggctgcggcgtcatccagaaccagacggcggtctcgaacgagacggtggcgtctgtggc 347
Query: 454 caccaggtccgggttggcgaggat---gccggcgccgatggcctggccggcgggcccgta 510
||||||||||||| | ||||||| | ||||||||||||||| ||||||||||||||
Sbjct: 348 gaccaggtccgggtcgtcgaggatcccggcggcgccgatggcctccccggcgggcccgta 407
Query: 511 gttgtagttgtaggatatctggatgggcccgcggccgtagtacttcttccccgcggcgca 570
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 408 gttgtagttgtaggagatctggatgggcccgcggccgtagtacttcttcccggcggcgca 467
Query: 571 cggccactgggcgctgggctcgcagtag---tccggccccgacg-cgccgc--cctgctc 624
||||||| | ||||| ||| ||||||| |||||| |||||| |||||| ||| |||
Sbjct: 468 cggccacagcgcgctcggcctgcagtaggcctccggcgccgacgccgccgcgtccttctc 527
Query: 625 ctccttgaagcagtagccccaggcgtagggcccgtcgggcgccgtcgcccacccgcccgt 684
||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 528 ctccttgtagcagtagccccaggcgtagggcccgtcgggcgccgacgcccacccgcccgt 587
Query: 685 cgtctcgtgggacgtctgcgccaggaacgccgccagctcgcgcttctgcacgtcgggcgc 744
||||||||| || |||||||||||||||||||||| ||||||||| || |||||||
Sbjct: 588 cgtctcgtgcgatgtctgcgccaggaacgccgccacctcgcgcttttgggcgtcggggct 647
Query: 745 ccccgtggtgccgaagcccgggaacgcgttggccgccgcgatgaagcccgcgtaggtgta 804
|||||||||||||||||||||||||| |||||| ||||||| |||| ||| |||||||||
Sbjct: 648 ccccgtggtgccgaagcccgggaacgagttggctgccgcgacgaaggccgagtaggtgta 707
Query: 805 gaagccgttggcggggcacgc 825
||||||| |||| ||||||||
Sbjct: 708 gaagccgctggcagggcacgc 728
>gb|CW206617.1|CW206617 104_635_11187687_116_36961_058 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11187687, DNA
sequence
Length = 639
Score = 728 bits (367), Expect = 0.0
Identities = 526/579 (90%)
Strand = Plus / Plus
Query: 154 gttgaagggcgtctggttggcgcagtccaagttgtcgccgtagctgaccccaagcaagtc 213
|||||||||| |||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct: 55 gttgaagggcttctggttggcgcagtccaagttatcgccgtagctgacaccaagcaagtc 114
Query: 214 acagtatcgtttgtagaagccgatccggtcggcgacgcggctgtcagcgccatggccgca 273
||||| || |||||||||||||||||||| ||||||||||| |||||||| | ||||||
Sbjct: 115 gcagtagcgcttgtagaagccgatccggtcagcgacgcggctatcagcgcctttgccgca 174
Query: 274 ctcgaggccgccgttgatgatgttggtgacgacgccgtagcccggcagcctgccggcggc 333
||||||||| || ||||||||||| ||||| || || || ||||||| ||| || |||||
Sbjct: 175 ctcgaggccaccattgatgatgttagtgacaacaccataccccggcaacctccccgcggc 234
Query: 334 cgtgtcagccgcggagggcgtccactgccccgtcatgacgtcgtggcacgacggcttggg 393
|||||||| | || ||||||||||| || ||||||||| |||||||||||||||||||
Sbjct: 235 ggtgtcagctcccgacggcgtccactggccggtcatgacggcgtggcacgacggcttggg 294
Query: 394 cgactgcggcgtcatccagaaccagacggcggtctcgaacgacacggtggggtcggtggc 453
|||||||||||||||||||||||| || || ||||||||||||||||| ||||| | ||
Sbjct: 295 cgactgcggcgtcatccagaaccacaccgccgtctcgaacgacacggtcgggtccgacgc 354
Query: 454 caccaggtccgggttggcgaggatgccggcgccgatggcctggccggcgggcccgtagtt 513
|||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct: 355 caccaggtccgggttggcgaggatgccggcgccgatggcctgcccggcggcgccgtagtt 414
Query: 514 gtagttgtaggatatctggatgggcccgcggccgtagtacttcttccccgcggcgcacgg 573
|||||||||||| ||||||||||| || |||||||||||||||||||| |||||||||||
Sbjct: 415 gtagttgtaggagatctggatgggtccacggccgtagtacttcttcccggcggcgcacgg 474
Query: 574 ccactgggcgctgggctcgcagtagtccggccccgacgcgccgccctgctcctccttgaa 633
|||||| | ||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 475 ccactgtgtgctgggctcgcagtagtccggccccgacgcggcgccctgctcctccttgaa 534
Query: 634 gcagtagccccaggcgtagggcccgtcgggcgccgtcgcccacccgcccgtcgtctcgtg 693
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 535 gcagtagccccaggcgtaggcgccgtcgggcgccgtcgcccacccgcccgtcgtctcgtg 594
Query: 694 ggacgtctgcgccaggaacgccgccagctcgcgcttctg 732
|| || || || |||||||||||||||||||| |||||
Sbjct: 595 cgaggtttgggcgaggaacgccgccagctcgcgtttctg 633
>gb|BE598085.1|BE598085 PI1_65_E11.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 632
Score = 708 bits (357), Expect = 0.0
Identities = 513/565 (90%)
Strand = Plus / Minus
Query: 154 gttgaagggcgtctggttggcgcagtccaagttgtcgccgtagctgaccccaagcaagtc 213
|||||||||| |||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct: 571 gttgaagggcttctggttggcgcagtccaagttatcgccgtagctgacaccaagcaagtc 512
Query: 214 acagtatcgtttgtagaagccgatccggtcggcgacgcggctgtcagcgccatggccgca 273
||||| || |||||||||||||||||||| ||||||||||| |||||||| | ||||||
Sbjct: 511 gcagtagcgcttgtagaagccgatccggtcagcgacgcggctatcagcgcctttgccgca 452
Query: 274 ctcgaggccgccgttgatgatgttggtgacgacgccgtagcccggcagcctgccggcggc 333
||||||||| || ||||||||||| ||||| || || || ||||||| ||| || |||||
Sbjct: 451 ctcgaggccaccattgatgatgttagtgacaacaccataccccggcaacctccccgcggc 392
Query: 334 cgtgtcagccgcggagggcgtccactgccccgtcatgacgtcgtggcacgacggcttggg 393
|||||||| | || ||||||||||| || ||||||||| |||||||||||||||||||
Sbjct: 391 ggtgtcagctcccgacggcgtccactggccggtcatgacggcgtggcacgacggcttggg 332
Query: 394 cgactgcggcgtcatccagaaccagacggcggtctcgaacgacacggtggggtcggtggc 453
|||||||||||||||||||||||| || || ||||||||||||||||| ||||| | ||
Sbjct: 331 cgactgcggcgtcatccagaaccacaccgccgtctcgaacgacacggtcgggtccgacgc 272
Query: 454 caccaggtccgggttggcgaggatgccggcgccgatggcctggccggcgggcccgtagtt 513
|||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct: 271 caccaggtccgggttggcgaggatgccggcgccgatggcctgcccggcggcgccgtagtt 212
Query: 514 gtagttgtaggatatctggatgggcccgcggccgtagtacttcttccccgcggcgcacgg 573
|||||||||||| ||||||||||| || |||||||||||||||||||| |||||||||||
Sbjct: 211 gtagttgtaggagatctggatgggtccacggccgtagtacttcttcccggcggcgcacgg 152
Query: 574 ccactgggcgctgggctcgcagtagtccggccccgacgcgccgccctgctcctccttgaa 633
|||||| | ||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 151 ccactgtgtgctgggctcgcagtagtccggccccgacgcggcgccctgctcctccttgaa 92
Query: 634 gcagtagccccaggcgtagggcccgtcgggcgccgtcgcccacccgcccgtcgtctcgtg 693
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 91 gcagtagccccaggcgtaggcgccgtcgggcgccgtcgcccacccgcccgtcgtctcgtg 32
Query: 694 ggacgtctgcgccaggaacgccgcc 718
|| || || || ||||||||||||
Sbjct: 31 cgaggtttgggcgaggaacgccgcc 7
>gb|BE597800.1|BE597800 PI1_65_E11.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 600
Score = 662 bits (334), Expect = 0.0
Identities = 483/533 (90%)
Strand = Plus / Minus
Query: 154 gttgaagggcgtctggttggcgcagtccaagttgtcgccgtagctgaccccaagcaagtc 213
|||||||||| |||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct: 533 gttgaagggcttctggttggcgcagtccaagttatcgccgtagctgacaccaagcaagtc 474
Query: 214 acagtatcgtttgtagaagccgatccggtcggcgacgcggctgtcagcgccatggccgca 273
||||| || |||||||||||||||||||| ||||||||||| |||||||| | ||||||
Sbjct: 473 gcagtagcgcttgtagaagccgatccggtcagcgacgcggctatcagcgcctttgccgca 414
Query: 274 ctcgaggccgccgttgatgatgttggtgacgacgccgtagcccggcagcctgccggcggc 333
||||||||| || ||||||||||| ||||| || || || ||||||| ||| || |||||
Sbjct: 413 ctcgaggccaccattgatgatgttagtgacaacaccataccccggcaacctccccgcggc 354
Query: 334 cgtgtcagccgcggagggcgtccactgccccgtcatgacgtcgtggcacgacggcttggg 393
|||||||| | || ||||||||||| || ||||||||| |||||||||||||||||||
Sbjct: 353 ggtgtcagctcccgacggcgtccactggccggtcatgacggcgtggcacgacggcttggg 294
Query: 394 cgactgcggcgtcatccagaaccagacggcggtctcgaacgacacggtggggtcggtggc 453
|||||||||||||||||||||||| || || ||||||||||||||||| ||||| | ||
Sbjct: 293 cgactgcggcgtcatccagaaccacaccgccgtctcgaacgacacggtcgggtccgacgc 234
Query: 454 caccaggtccgggttggcgaggatgccggcgccgatggcctggccggcgggcccgtagtt 513
|||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct: 233 caccaggtccgggttggcgaggatgccggcgccgatggcctgcccggcggcgccgtagtt 174
Query: 514 gtagttgtaggatatctggatgggcccgcggccgtagtacttcttccccgcggcgcacgg 573
|||||||||||| ||||||||||| || |||||||||||||||||||| |||||||||||
Sbjct: 173 gtagttgtaggagatctggatgggtccacggccgtagtacttcttcccggcggcgcacgg 114
Query: 574 ccactgggcgctgggctcgcagtagtccggccccgacgcgccgccctgctcctccttgaa 633
|||||| | ||||||||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct: 113 ccactgtgtgctgggctcgcagtantccggccccgacgcggcgccctgctcctccttgaa 54
Query: 634 gcagtagccccaggcgtagggcccgtcgggcgccgtcgcccacccgcccgtcg 686
||||||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct: 53 gcagtagcccccagcgtaggcgccgtcgggcgccgtcgcccacccgcccgtcg 1
>gb|BZ338038.1|BZ338038 ia92e12.b1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone ia92e12 5', DNA sequence
Length = 608
Score = 636 bits (321), Expect = e-180
Identities = 511/570 (89%), Gaps = 11/570 (1%)
Strand = Plus / Plus
Query: 154 gttgaagggcgtctggttggcgcagtccaagttgtcgccgtagctgaccccaagcaagtc 213
|||||| ||| |||||||||||||||||| ||||| ||||||||| ||||||||||||||
Sbjct: 39 gttgaatggcctctggttggcgcagtccacgttgttgccgtagctaaccccaagcaagtc 98
Query: 214 acagtatcgtttgtagaagccgatccggtcggcgacgcggctgtcagcgccatggccgca 273
||||| || |||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct: 99 gcagtagcgcttgtagaagccgatccggtcggcgacgcggctatcggcgccatggccgca 158
Query: 274 ctcgaggccgccgttgatgatgttggtgacgacgccgtagcccggcagcctgccggcggc 333
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct: 159 ctcgaggccgccgttgatgatgttggtgacgacgccataccccggcagcctgccggcggc 218
Query: 334 cgtgtcagccgcggagggcgtccactgccccgtcatgacgtcgtggcacgacggcttggg 393
||||| || | || |||| |||||||||||| | |||| |||||||||||||||||||
Sbjct: 219 ggtgtcggcaggcgacggcgcccactgccccgtgacgacggcgtggcacgacggcttggg 278
Query: 394 cgactgcggcgtcatccagaaccagacggcggtctcgaacgacacggtggggtcggtggc 453
|| ||||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||
Sbjct: 279 cggctgcggcgtcatccagaaccagacggcggtctcgaacgagacggtggcgtctgtggc 338
Query: 454 caccaggtccgggttggcgaggat---gccggcgccgatggcctggccggcgggcccgta 510
||||||||||||| | ||||||| | ||||||||||||||| ||||||||||||||
Sbjct: 339 gaccaggtccgggtcgtcgaggatcccggcggcgccgatggcctccccggcgggcccgta 398
Query: 511 gttgtagttgtaggatatctggatgggcccgcggccgtagtacttcttccccgcggcgca 570
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 399 gttgtagttgtaggagatctggatgggcccgcggccgtagtacttcttcccggcggcgca 458
Query: 571 cggccactgggcgctgggctcgcagtag---tccggccccgacg-cgccgc--cctgctc 624
||||||| | ||||| ||| |||||| |||||| |||||| |||||| ||| |||
Sbjct: 459 cggccacagcgcgctcggcctgcagtangcctccggcgccgacgccgccgcgtccttctc 518
Query: 625 ctccttgaagcagtagccccaggcgtagggcccgtcgggcgccgtcgccc--acccgccc 682
||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct: 519 ctccttgtagcagtagccccaggcgtagggcccgtcgggcgccgacgccccaccccgccc 578
Query: 683 gtcgtctcgtgggacgtctgcgccaggaac 712
||||||||| | || |||||||||||||||
Sbjct: 579 gtcgtctcgcgcgatgtctgcgccaggaac 608
>gb|CW488277.1|CW488277 fsbb001f254j12f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f254j12, DNA
sequence
Length = 507
Score = 609 bits (307), Expect = e-172
Identities = 457/503 (90%), Gaps = 3/503 (0%)
Strand = Plus / Plus
Query: 287 ttgatgatgttggtgacgacgccgtagcccggcagcctgccggcggccgtgtcagccgcg 346
||||||||||| ||||| || || || ||||||| ||| || ||||| |||||||| |
Sbjct: 7 ttgatgatgttagtgac-acaccataccccggcaacctccccgcggcggtgtcagctccc 65
Query: 347 gagggcgtccactgccccgtcatgacgtcgtggcacgacggcttgggcgactgcggcgtc 406
|| ||||||||||| || ||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 66 gacggcgtccactggccggtcatgacggcgtggcacgacggcttgggcgactgcggcgtc 125
Query: 407 atccagaaccagacggcggtctcgaacgacacggtggggtcggtggccaccaggtccggg 466
||||||||||| || || ||||||||||||||||| ||||| | |||||||||||||||
Sbjct: 126 atccagaaccacaccgccgtctcgaacgacacggtcgggtccgacgccaccaggtccggg 185
Query: 467 ttggcgaggatgccggcgccgatggcctggccggcgggcccgtagttgtagttgtaggat 526
||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct: 186 ttggcgaggatgccggcgccgatggcctgcccggcggcgccgtagttgtagttgtaggag 245
Query: 527 atctggatgggcccgcggccgtagtacttcttccccgcggcgcacggccactgggcgctg 586
||||||||||| || |||||||||||||||||||| ||||||||||||||||| | ||||
Sbjct: 246 atctggatgggtccacggccgtagtacttcttcccggcggcgcacggccactgtgtgctg 305
Query: 587 ggctcgcagtagtccggccccgacgcgccgccctgctcctccttgaagcagtagccccag 646
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 306 ggctcgcagtagtccggccccgacgcggcgccctgctcctccttgaagcagtagccccag 365
Query: 647 gcgtagggcccgtcgggcgccgtcgcccacccgcccgtcgtctcgtgggacgtctgcgcc 706
||||||| |||||||||||||||||||||||||||||||||||||| || || || ||
Sbjct: 366 gcgtaggcgccgtcgggcgccgtcgcccacccgcccgtcgtctcgtgcgaggtttgggcg 425
Query: 707 aggaacgccgccagctcgcgcttctgcacgtcgggcgcc-cccgtggtgccgaagcccgg 765
|||||||||||||||||||| ||||| ||| |||||| ||||||||||||||||||||
Sbjct: 426 aggaacgccgccagctcgcgtttctgggtgtc-ggcgccgcccgtggtgccgaagcccgg 484
Query: 766 gaacgcgttggccgccgcgatga 788
|||||||||||||||||||||||
Sbjct: 485 gaacgcgttggccgccgcgatga 507
>gb|CW388024.1|CW388024 fsbb001f072j20f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f072j20, DNA
sequence
Length = 694
Score = 553 bits (279), Expect = e-155
Identities = 446/498 (89%), Gaps = 9/498 (1%)
Strand = Plus / Minus
Query: 405 tcatccagaaccagacggcggtctcgaacgacacggtggggtcggtggccaccaggtccg 464
||||||||||||||||||||||||||||||| ||||||| ||| ||||| ||||||||||
Sbjct: 694 tcatccagaaccagacggcggtctcgaacgagacggtggcgtctgtggcgaccaggtccg 635
Query: 465 ggttggcgaggatgccggcg---ccgatggcctggccggcgggcccgtagttgtagttgt 521
||| | ||||||| |||||| |||||||||| |||||||||||||||||||||||||
Sbjct: 634 ggtcgtcgaggatcccggcggcgccgatggcctccccggcgggcccgtagttgtagttgt 575
Query: 522 aggatatctggatgggcccgcggccgtagtacttcttccccgcggcgcacggccactggg 581
|||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| | |
Sbjct: 574 aggagatctggatgggcccgcggccgtagtacttcttcccggcggcgcacggccacagcg 515
Query: 582 cgctgggctcgcagtag---tccggccccgacgc-gccgc--cctgctcctccttgaagc 635
|||| ||| ||||||| |||||| ||||||| ||||| ||| |||||||||| |||
Sbjct: 514 cgctcggcctgcagtaggcctccggcgccgacgccgccgcgtccttctcctccttgtagc 455
Query: 636 agtagccccaggcgtagggcccgtcgggcgccgtcgcccacccgcccgtcgtctcgtggg 695
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct: 454 agtagccccaggcgtagggcccgtcgggcgccgacgcccacccgcccgtcgtctcgtgcg 395
Query: 696 acgtctgcgccaggaacgccgccagctcgcgcttctgcacgtcgggcgcccccgtggtgc 755
| |||||||||||||||||||||| ||||||||| || ||||||| |||||||||||
Sbjct: 394 atgtctgcgccaggaacgccgccacctcgcgcttttgggcgtcggggctccccgtggtgc 335
Query: 756 cgaagcccgggaacgcgttggccgccgcgatgaagcccgcgtaggtgtagaagccgttgg 815
||||||||||||||| |||||| ||||||| |||| ||| |||||||||||||||| |||
Sbjct: 334 cgaagcccgggaacgagttggctgccgcgacgaaggccgagtaggtgtagaagccgctgg 275
Query: 816 cggggcacgccgcgtcgttgcggtgcagcagcatctggttgaagagcgactcggggatga 875
| |||||||| | | |||||||||||||||||||||||||||||| ||||||| |||||
Sbjct: 274 cagggcacgcgggcttgttgcggtgcagcagcatctggttgaagagagactcggagatga 215
Query: 876 tggacgccacgccgccgc 893
|||||||||||| |||||
Sbjct: 214 tggacgccacgctgccgc 197
>gb|BE367523.1|BE367523 PI1_8_E06.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 520
Score = 492 bits (248), Expect = e-137
Identities = 374/416 (89%)
Strand = Plus / Minus
Query: 154 gttgaagggcgtctggttggcgcagtccaagttgtcgccgtagctgaccccaagcaagtc 213
|||||||||| |||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct: 416 gttgaagggcttctggttggcgcagtccaagttatcgccgtagctgacaccaagcaagtc 357
Query: 214 acagtatcgtttgtagaagccgatccggtcggcgacgcggctgtcagcgccatggccgca 273
||||| || |||||||||||||||||||| ||||||||||| |||||||| | ||||||
Sbjct: 356 gcagtagcgcttgtagaagccgatccggtcagcgacgcggctatcagcgcctttgccgca 297
Query: 274 ctcgaggccgccgttgatgatgttggtgacgacgccgtagcccggcagcctgccggcggc 333
||||||||| || ||||||||||| ||||| || || || ||||||| ||| || |||||
Sbjct: 296 ctcgaggccaccattgatgatgttagtgacaacaccataccccggcaacctccccgcggc 237
Query: 334 cgtgtcagccgcggagggcgtccactgccccgtcatgacgtcgtggcacgacggcttggg 393
|||||||| | || ||||||||||| || ||||||||| |||||||||||||||||||
Sbjct: 236 ggtgtcagctcccgacggcgtccactggccggtcatgacggcgtggcacgacggcttggg 177
Query: 394 cgactgcggcgtcatccagaaccagacggcggtctcgaacgacacggtggggtcggtggc 453
|||||||||||||||||||||||| || || ||||||||||||||||| ||||| | ||
Sbjct: 176 cgactgcggcgtcatccagaaccacaccgccgtctcgaacgacacggtcgggtccgacgc 117
Query: 454 caccaggtccgggttggcgaggatgccggcgccgatggcctggccggcgggcccgtagtt 513
|||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct: 116 caccaggtccgggttggcgaggatgccggcgccgatggcctgcccggcggcgccgtagtt 57
Query: 514 gtagttgtaggatatctggatgggcccgcggccgtagtacttcttccccgcggcgc 569
|||||||||||| ||||||||||| || |||||||||||||||||||| |||||||
Sbjct: 56 gtagttgtaggagatctggatgggtccacggccgtagtacttcttcccggcggcgc 1
>gb|CW276618.1|CW276618 104_750_11405587_148_35398_074 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11405587, DNA
sequence
Length = 582
Score = 482 bits (243), Expect = e-134
Identities = 378/420 (90%), Gaps = 6/420 (1%)
Strand = Plus / Plus
Query: 480 cggcgccgatggcctggccggcgggcccgtagttgtagttgtaggatatctggatgggcc 539
||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 20 cggcgccgatggcctccccggcgggcccgtagttgtagttgtaggagatctggatgggcc 79
Query: 540 cgcggccgtagtacttcttccccgcggcgcacggccactgggcgctgggctcgcagtag- 598
|||||||||||||||||||||| ||||||||||||||| | ||||| ||| |||||||
Sbjct: 80 cgcggccgtagtacttcttcccggcggcgcacggccacagcgcgctcggcctgcagtagg 139
Query: 599 --tccggccccgacgc-gccgc--cctgctcctccttgaagcagtagccccaggcgtagg 653
|||||| ||||||| ||||| ||| |||||||||| |||||||||||||||||||||
Sbjct: 140 cctccggcgccgacgccgccgcgtccttctcctccttgtagcagtagccccaggcgtagg 199
Query: 654 gcccgtcgggcgccgtcgcccacccgcccgtcgtctcgtgggacgtctgcgccaggaacg 713
||||||||||||||| |||||||||||||||||||||||| || ||||||||||||||||
Sbjct: 200 gcccgtcgggcgccgacgcccacccgcccgtcgtctcgtgcgatgtctgcgccaggaacg 259
Query: 714 ccgccagctcgcgcttctgcacgtcgggcgcccccgtggtgccgaagcccgggaacgcgt 773
|||||| ||||||||| || ||||||| |||||||||||||||||||||||||| ||
Sbjct: 260 ccgccacctcgcgcttttgggcgtcggggctccccgtggtgccgaagcccgggaacgagt 319
Query: 774 tggccgccgcgatgaagcccgcgtaggtgtagaagccgttggcggggcacgccgcgtcgt 833
|||| ||||||| |||| ||| |||||||||||||||| |||| |||||||| | | ||
Sbjct: 320 tggctgccgcgacgaaggccgagtaggtgtagaagccgctggcagggcacgcgggcttgt 379
Query: 834 tgcggtgcagcagcatctggttgaagagcgactcggggatgatggacgccacgccgccgc 893
|||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |||||
Sbjct: 380 tgcggtgcagcagcatctggttgaagagagactcggagatgatggacgccacgctgccgc 439
>gb|CW470070.1|CW470070 fsbb001f223b16f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f223b16, DNA
sequence
Length = 452
Score = 458 bits (231), Expect = e-127
Identities = 318/347 (91%)
Strand = Plus / Plus
Query: 154 gttgaagggcgtctggttggcgcagtccaagttgtcgccgtagctgaccccaagcaagtc 213
|||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 102 gttgaagggcatctggttggcgcagtccaagttgtcgccatagctgaccccaagcaagtc 161
Query: 214 acagtatcgtttgtagaagccgatccggtcggcgacgcggctgtcagcgccatggccgca 273
||||| || |||||||| ||||||| ||| ||||||||| | || ||||||||||||||
Sbjct: 162 gcagtagcgcttgtagaacccgatcctgtccgcgacgcgggtatcggcgccatggccgca 221
Query: 274 ctcgaggccgccgttgatgatgttggtgacgacgccgtagcccggcagcctgccggcggc 333
|||||||||||||||||||||||||||||||||||| || ||||||| ||| || |||||
Sbjct: 222 ctcgaggccgccgttgatgatgttggtgacgacgccataccccggcaacctccccgcggc 281
Query: 334 cgtgtcagccgcggagggcgtccactgccccgtcatgacgtcgtggcacgacggcttggg 393
||||||| || || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 gatgtcagctgccgacggcgtccactgccccgtcatgacgtcgtggcacgacggcttggg 341
Query: 394 cgactgcggcgtcatccagaaccagacggcggtctcgaacgacacggtggggtcggtggc 453
|||||||||||||||||||||||| || |||||||| ||||| ||||||| ||||| |||
Sbjct: 342 cgactgcggcgtcatccagaaccacaccgcggtctccaacgagacggtggcgtcggcggc 401
Query: 454 caccaggtccgggttggcgaggatgccggcgccgatggcctggccgg 500
|| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 gacaaggtccgggttggcgaggatgccggcgccgatggcctggccgg 448
>gb|CF760116.1|CF760116 DSAF1_55_F11.b1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_55_F11_A011 5', mRNA sequence
Length = 527
Score = 444 bits (224), Expect = e-123
Identities = 341/380 (89%)
Strand = Plus / Minus
Query: 154 gttgaagggcgtctggttggcgcagtccaagttgtcgccgtagctgaccccaagcaagtc 213
|||||||||| |||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct: 380 gttgaagggcttctggttggcgcagtccaagttatcgccgtagctgacaccaagcaagtc 321
Query: 214 acagtatcgtttgtagaagccgatccggtcggcgacgcggctgtcagcgccatggccgca 273
||||| || |||||||||||||||||||| ||||||||||| |||||||| | ||||||
Sbjct: 320 gcagtagcgcttgtagaagccgatccggtcagcgacgcggctatcagcgcctttgccgca 261
Query: 274 ctcgaggccgccgttgatgatgttggtgacgacgccgtagcccggcagcctgccggcggc 333
||||||||| || ||||||||||| ||||| || || || ||||||| ||| || |||||
Sbjct: 260 ctcgaggccaccattgatgatgttagtgacaacaccataccccggcaacctccccgcggc 201
Query: 334 cgtgtcagccgcggagggcgtccactgccccgtcatgacgtcgtggcacgacggcttggg 393
|||||||| | || ||||||||||| || ||||||||| |||||||||||||||||||
Sbjct: 200 ggtgtcagctcccgacggcgtccactggccggtcatgacggcgtggcacgacggcttggg 141
Query: 394 cgactgcggcgtcatccagaaccagacggcggtctcgaacgacacggtggggtcggtggc 453
|||||||||||||||||||||||| || || ||||||||||||||||| ||||| | ||
Sbjct: 140 cgactgcggcgtcatccagaaccacaccgccgtctcgaacgacacggtcgggtccgacgc 81
Query: 454 caccaggtccgggttggcgaggatgccggcgccgatggcctggccggcgggcccgtagtt 513
|||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct: 80 caccaggtccgggttggcgaggatgccggcgccgatggcctgcccggcggcgccgtagtt 21
Query: 514 gtagttgtaggatatctgga 533
|||||||||||| |||||||
Sbjct: 20 gtagttgtaggagatctgga 1
>gb|CW206618.1|CW206618 104_635_11187687_148_36965_058 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11187687, DNA
sequence
Length = 587
Score = 438 bits (221), Expect = e-121
Identities = 310/337 (91%), Gaps = 2/337 (0%)
Strand = Plus / Minus
Query: 558 tccccgcggcgcacggccactgggcgctgggctcgcagtagtccggccccgacgcgccgc 617
|||| ||||||||||||||||| | ||||||||||||||||||||||||||||||| |||
Sbjct: 587 tcccggcggcgcacggccactgtgtgctgggctcgcagtagtccggccccgacgcggcgc 528
Query: 618 cctgctcctccttgaagcagtagccccaggcgtagggcccgtcgggcgccgtcgcccacc 677
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 527 cctgctcctccttgaagcagtagccccaggcgtaggcgccgtcgggcgccgtcgcccacc 468
Query: 678 cgcccgtcgtctcgtgggacgtctgcgccaggaacgccgccagctcgcgcttctgcacgt 737
|||||||||||||||| || || || || |||||||||||||||||||| ||||| ||
Sbjct: 467 cgcccgtcgtctcgtgcgaggtttgggcgaggaacgccgccagctcgcgtttctgggtgt 408
Query: 738 cgggcgcc-cccgtggtgccgaagcccgggaacgcgttggccgccgcgatgaagcccgcg 796
| |||||| ||||||||||||||||||||||||||||||||||||||||||||| | | |
Sbjct: 407 c-ggcgccgcccgtggtgccgaagcccgggaacgcgttggccgccgcgatgaaggcggag 349
Query: 797 taggtgtagaagccgttggcggggcacgccgcgtcgttgcggtgcagcagcatctggttg 856
|||||||||||||| |||||||||||||| |||||||||||||| || ||||||||||||
Sbjct: 348 taggtgtagaagccattggcggggcacgcggcgtcgttgcggtggaggagcatctggttg 289
Query: 857 aagagcgactcggggatgatggacgccacgccgccgc 893
||||| ||||||| ||||||||||||||||| |||||
Sbjct: 288 aagagggactcggagatgatggacgccacgctgccgc 252
Score = 172 bits (87), Expect = 5e-041
Identities = 137/151 (90%), Gaps = 2/151 (1%)
Strand = Plus / Minus
Query: 908 ggggtgctgccgc-gctgccgctgcactggctctggcacccgctgccgcagtagtcggaa 966
||||||||||||| ||||||| |||||||||||||||| |||||||||||||| |||||
Sbjct: 216 ggggtgctgccgcagctgccggtgcactggctctggcagccgctgccgcagtaatcggag 157
Query: 967 g-gctgccgcaccacccgaactggctgcagcacaggcagttggggcacagcgcgccgccg 1025
| | ||||||||||||||||| ||||||||| |||||||||||||| ||||||||||||
Sbjct: 156 gtggagccgcaccacccgaacttgctgcagcagaggcagttggggcagagcgcgccgccg 97
Query: 1026 gcctgcgacccgcactgctcggcgcgagcgg 1056
||||||| ||||||||||||||||| ||||
Sbjct: 96 gcctgcgtgccgcactgctcggcgcgtgcgg 66
>gb|BE366378.1|BE366378 PI1_32_H10.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 454
Score = 367 bits (185), Expect = 2e-099
Identities = 341/393 (86%)
Strand = Plus / Minus
Query: 154 gttgaagggcgtctggttggcgcagtccaagttgtcgccgtagctgaccccaagcaagtc 213
|||||||||| |||||||||||||||||||||| |||||||| ||||| |||||||||||
Sbjct: 393 gttgaagggcttctggttggcgcagtccaagttatcgccgtatctgacaccaagcaagtc 334
Query: 214 acagtatcgtttgtagaagccgatccggtcggcgacgcggctgtcagcgccatggccgca 273
||||| || ||||| || ||||||||||| | ||||||||| |||||||| | ||||||
Sbjct: 333 gcagtagcgcttgtaaaacccgatccggtcagagacgcggctatcagcgcctttgccgca 274
Query: 274 ctcgaggccgccgttgatgatgttggtgacgacgccgtagcccggcagcctgccggcggc 333
||||||||| || ||||||||||| ||||| || || || ||||||| ||| || ||||
Sbjct: 273 ctcgaggccaccattgatgatgttagtgacaacaccataccccggcaacctccccgcggg 214
Query: 334 cgtgtcagccgcggagggcgtccactgccccgtcatgacgtcgtggcacgacggcttggg 393
|||||||| | || ||||| ||||| || ||||||||| |||||||||||||||||||
Sbjct: 213 ggtgtcagctcccgacggcgtacactggccggtcatgacggcgtggcacgacggcttggg 154
Query: 394 cgactgcggcgtcatccagaaccagacggcggtctcgaacgacacggtggggtcggtggc 453
|||||||||||| ||||| ||||| || || ||||||||||||||||| ||||| | ||
Sbjct: 153 cgactgcggcgttatccaaaaccacaccgccgtctcgaacgacacggtcgggtccgacgc 94
Query: 454 caccaggtccgggttggcgaggatgccggcgccgatggcctggccggcgggcccgtagtt 513
||||||||||||||||||||||||||||||||| |||||||| ||||||| ||||| ||
Sbjct: 93 caccaggtccgggttggcgaggatgccggcgcctatggcctgcccggcggcgccgtattt 34
Query: 514 gtagttgtaggatatctggatgggcccgcggcc 546
||||||||| || ||||||||||| || |||||
Sbjct: 33 gtagttgtaagagatctggatgggtccacggcc 1
>gb|CW307371.1|CW307371 104_795_11468105_116_35728_073 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11468105, DNA
sequence
Length = 642
Score = 299 bits (151), Expect = 3e-079
Identities = 214/235 (91%)
Strand = Plus / Plus
Query: 154 gttgaagggcgtctggttggcgcagtccaagttgtcgccgtagctgaccccaagcaagtc 213
|||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 408 gttgaagggcatctggttggcgcagtccaagttgtcgccatagctgaccccaagcaagtc 467
Query: 214 acagtatcgtttgtagaagccgatccggtcggcgacgcggctgtcagcgccatggccgca 273
||||| || |||||||| ||||||| ||| ||||||||| | || ||||||||||||||
Sbjct: 468 gcagtagcgcttgtagaacccgatcctgtccgcgacgcgggtatcggcgccatggccgca 527
Query: 274 ctcgaggccgccgttgatgatgttggtgacgacgccgtagcccggcagcctgccggcggc 333
|||||||||||||||||||||||||||||||||||| || ||||||| ||| || |||||
Sbjct: 528 ctcgaggccgccgttgatgatgttggtgacgacgccataccccggcaacctccccgcggc 587
Query: 334 cgtgtcagccgcggagggcgtccactgccccgtcatgacgtcgtggcacgacggc 388
||||||| || || |||||||||||||||||||||||||||||||||||||||
Sbjct: 588 gatgtcagctgccgacggcgtccactgccccgtcatgacgtcgtggcacgacggc 642
>gb|BE594394.1|BE594394 PI1_32_H10.b2_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 574
Score = 291 bits (147), Expect = 7e-077
Identities = 218/239 (91%), Gaps = 2/239 (0%)
Strand = Plus / Minus
Query: 656 ccgtcgggcgccgtcgcccacccgcccgtcgtctcgtgggacgtctgcgccaggaacgcc 715
|||||||||||||||||||||||||||||||||||||| || || || || |||||||||
Sbjct: 570 ccgtcgggcgccgtcgcccacccgcccgtcgtctcgtgcgaggtttgggcgaggaacgcc 511
Query: 716 gccagctcgcgcttctgcacgtcgggcgcc-cccgtggtgccgaagcccgggaacgcgtt 774
||||||||||| ||||| ||||| |||| |||||||||||||||||||||||||||||
Sbjct: 510 gccagctcgcgtttctgggtgtcgg-cgccgcccgtggtgccgaagcccgggaacgcgtt 452
Query: 775 ggccgccgcgatgaagcccgcgtaggtgtagaagccgttggcggggcacgccgcgtcgtt 834
|||||||||||||||| | | ||||||||||||||| |||||||||||||| ||||||||
Sbjct: 451 ggccgccgcgatgaaggcggagtaggtgtagaagccattggcggggcacgcggcgtcgtt 392
Query: 835 gcggtgcagcagcatctggttgaagagcgactcggggatgatggacgccacgccgccgc 893
|||||| || ||||||||||||||||| ||||||| ||||||||||||||||| |||||
Sbjct: 391 gcggtggaggagcatctggttgaagagggactcggagatgatggacgccacgctgccgc 333
Score = 172 bits (87), Expect = 5e-041
Identities = 137/151 (90%), Gaps = 2/151 (1%)
Strand = Plus / Minus
Query: 908 ggggtgctgccgc-gctgccgctgcactggctctggcacccgctgccgcagtagtcggaa 966
||||||||||||| ||||||| |||||||||||||||| |||||||||||||| |||||
Sbjct: 297 ggggtgctgccgcagctgccggtgcactggctctggcagccgctgccgcagtaatcggag 238
Query: 967 g-gctgccgcaccacccgaactggctgcagcacaggcagttggggcacagcgcgccgccg 1025
| | ||||||||||||||||| ||||||||| |||||||||||||| ||||||||||||
Sbjct: 237 gtggagccgcaccacccgaacttgctgcagcagaggcagttggggcagagcgcgccgccg 178
Query: 1026 gcctgcgacccgcactgctcggcgcgagcgg 1056
||||||| ||||||||||||||||| ||||
Sbjct: 177 gcctgcgtgccgcactgctcggcgcgtgcgg 147
>gb|CL186365.1|CL186365 104_401_10900160_116_32413_030 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10900160, DNA
sequence
Length = 695
Score = 256 bits (129), Expect = 4e-066
Identities = 179/195 (91%), Gaps = 3/195 (1%)
Strand = Plus / Minus
Query: 702 gcgccaggaacgccgccagctcgcgcttctgcacgtcgggc---gcccccgtggtgccga 758
||||||||||||||||||||||||||||||| ||||||||| |||||||| |||||||
Sbjct: 695 gcgccaggaacgccgccagctcgcgcttctggacgtcgggcttcgcccccgtcgtgccga 636
Query: 759 agcccgggaacgcgttggccgccgcgatgaagcccgcgtaggtgtagaagccgttggcgg 818
|||||||||| | ||||||||||||||||||| | ||||||||||||||||||||||| |
Sbjct: 635 agcccgggaaggagttggccgccgcgatgaaggcggcgtaggtgtagaagccgttggcag 576
Query: 819 ggcacgccgcgtcgttgcggtgcagcagcatctggttgaagagcgactcggggatgatgg 878
|||| | |||||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct: 575 ggcagccggcgtcgttgcggtgcagcagcatctggttgaagacggactcggagatgatgg 516
Query: 879 acgccacgccgccgc 893
|||||||||||||||
Sbjct: 515 acgccacgccgccgc 501
Score = 151 bits (76), Expect = 2e-034
Identities = 116/128 (90%), Gaps = 1/128 (0%)
Strand = Plus / Minus
Query: 923 tgccgctgcactggctctggcacccgctgccgcagtagtcggaag-gctgccgcaccacc 981
||||| |||||||||||||||| |||||||||||||||||||| | ||||||||||||||
Sbjct: 491 tgccggtgcactggctctggcagccgctgccgcagtagtcggaggtgctgccgcaccacc 432
Query: 982 cgaactggctgcagcacaggcagttggggcacagcgcgccgccggcctgcgacccgcact 1041
|| || |||||||||| ||||||||||||||||||||||| ||||||||| |||||||
Sbjct: 431 cgtacatgctgcagcactggcagttggggcacagcgcgccggcggcctgcgtgccgcact 372
Query: 1042 gctcggcg 1049
||| ||||
Sbjct: 371 gctgggcg 364
>gb|BZ338039.1|BZ338039 ia92e12.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone ia92e12 5', DNA sequence
Length = 726
Score = 163 bits (82), Expect = 4e-038
Identities = 124/138 (89%)
Strand = Plus / Minus
Query: 756 cgaagcccgggaacgcgttggccgccgcgatgaagcccgcgtaggtgtagaagccgttgg 815
||||||||||||||| |||||| ||||||| |||| ||| |||||||||||||||| |||
Sbjct: 726 cgaagcccgggaacgagttggctgccgcgacgaaggccgagtaggtgtagaagccgctgg 667
Query: 816 cggggcacgccgcgtcgttgcggtgcagcagcatctggttgaagagcgactcggggatga 875
| |||||||| | | |||||||||||||||||||||||||||||| ||||||| |||||
Sbjct: 666 cagggcacgcgggcttgttgcggtgcagcagcatctggttgaagagagactcggagatga 607
Query: 876 tggacgccacgccgccgc 893
|||||||||||| |||||
Sbjct: 606 tggacgccacgctgccgc 589
>gb|CW438619.1|CW438619 fsbb001f156f15f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f156f15, DNA
sequence
Length = 430
Score = 155 bits (78), Expect = 1e-035
Identities = 111/122 (90%)
Strand = Plus / Plus
Query: 154 gttgaagggcgtctggttggcgcagtccaagttgtcgccgtagctgaccccaagcaagtc 213
|||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 309 gttgaagggcatctggttggcgcagtccaagttgtcgccatagctgaccccaagcaagtc 368
Query: 214 acagtatcgtttgtagaagccgatccggtcggcgacgcggctgtcagcgccatggccgca 273
||||| || |||||||| ||||||| ||| ||||||||| | || ||||||||||||||
Sbjct: 369 gcagtagcgcttgtagaacccgatcctgtccgcgacgcgggtatcggcgccatggccgca 428
Query: 274 ct 275
||
Sbjct: 429 ct 430
>gb|CW487999.1|CW487999 fsbb001f254c13k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f254c13, DNA
sequence
Length = 591
Score = 151 bits (76), Expect = 2e-034
Identities = 116/128 (90%), Gaps = 1/128 (0%)
Strand = Plus / Plus
Query: 923 tgccgctgcactggctctggcacccgctgccgcagtagtcggaag-gctgccgcaccacc 981
||||| |||||||||||||||| |||||||||||||||||||| | ||||||||||||||
Sbjct: 106 tgccggtgcactggctctggcagccgctgccgcagtagtcggaggtgctgccgcaccacc 165
Query: 982 cgaactggctgcagcacaggcagttggggcacagcgcgccgccggcctgcgacccgcact 1041
|| || |||||||||| ||||||||||||||||||||||| ||||||||| |||||||
Sbjct: 166 cgtacatgctgcagcactggcagttggggcacagcgcgccggcggcctgcgtgccgcact 225
Query: 1042 gctcggcg 1049
||| ||||
Sbjct: 226 gctgggcg 233
Score = 135 bits (68), Expect = 1e-029
Identities = 89/96 (92%)
Strand = Plus / Plus
Query: 798 aggtgtagaagccgttggcggggcacgccgcgtcgttgcggtgcagcagcatctggttga 857
||||||||||||||||||| ||||| | |||||||||||||||||||||||||||||||
Sbjct: 1 aggtgtagaagccgttggcagggcagccggcgtcgttgcggtgcagcagcatctggttga 60
Query: 858 agagcgactcggggatgatggacgccacgccgccgc 893
||| ||||||| |||||||||||||||||||||||
Sbjct: 61 agacggactcggagatgatggacgccacgccgccgc 96
>gb|CN129927.1|CN129927 RHOH1_38_F07.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_38_F07_A002 3', mRNA sequence
Length = 809
Score = 121 bits (61), Expect = 1e-025
Identities = 97/109 (88%)
Strand = Plus / Minus
Query: 622 ctcctccttgaagcagtagccccaggcgtagggcccgtcgggcgccgtcgcccacccgcc 681
|||||||||||||||| ||||| |||||||| |||||||| |||||||||||||||||
Sbjct: 240 ctcctccttgaagcagagcccccacgcgtagggaccgtcgggtgccgtcgcccacccgcc 181
Query: 682 cgtcgtctcgtgggacgtctgcgccaggaacgccgccagctcgcgcttc 730
|| |||||||| || ||||||||||||||||||||| ||||||||||
Sbjct: 180 ggtggtctcgtgcgagatctgcgccaggaacgccgccacctcgcgcttc 132
Score = 77.8 bits (39), Expect = 2e-012
Identities = 48/51 (94%)
Strand = Plus / Minus
Query: 367 catgacgtcgtggcacgacggcttgggcgactgcggcgtcatccagaacca 417
||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct: 492 catgacgtcgtggcacgacggcttgggcgacctcggggtcatccagaacca 442
>gb|CN130014.1|CN130014 RHOH1_38_F07.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_38_F07_A002 5', mRNA sequence
Length = 723
Score = 121 bits (61), Expect = 1e-025
Identities = 97/109 (88%)
Strand = Plus / Minus
Query: 622 ctcctccttgaagcagtagccccaggcgtagggcccgtcgggcgccgtcgcccacccgcc 681
|||||||||||||||| ||||| |||||||| |||||||| |||||||||||||||||
Sbjct: 431 ctcctccttgaagcagagcccccacgcgtagggaccgtcgggtgccgtcgcccacccgcc 372
Query: 682 cgtcgtctcgtgggacgtctgcgccaggaacgccgccagctcgcgcttc 730
|| |||||||| || ||||||||||||||||||||| ||||||||||
Sbjct: 371 ggtggtctcgtgcgagatctgcgccaggaacgccgccacctcgcgcttc 323
Score = 77.8 bits (39), Expect = 2e-012
Identities = 48/51 (94%)
Strand = Plus / Minus
Query: 367 catgacgtcgtggcacgacggcttgggcgactgcggcgtcatccagaacca 417
||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct: 683 catgacgtcgtggcacgacggcttgggcgacctcggggtcatccagaacca 633
>gb|CW266083.1|CW266083 104_735_11232237_148_35267_085 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11232237, DNA
sequence
Length = 662
Score = 117 bits (59), Expect = 2e-024
Identities = 169/203 (83%), Gaps = 2/203 (0%)
Strand = Plus / Minus
Query: 268 gccgcactcgaggccgccgttgatgatgttggtgacgacgccgtagcccggcagcctgcc 327
||||||||| | ||||||||||||||||||||| ||||| || || || ||||| ||
Sbjct: 487 gccgcactccatcccgccgttgatgatgttggtggtcacgccatacccggggagcctccc 428
Query: 328 ggcggccgtgtcagccgcggagggcgtcca-ctgccccgtcatgacgtcgtggcacgacg 386
||||| ||| | |||||||||||||| ||||| ||||||||| ||||||||||||
Sbjct: 427 cgcggcgcggtcgtcggcggagggcgtccagctgccg-gtcatgacggcgtggcacgacg 369
Query: 387 gcttgggcgactgcggcgtcatccagaaccagacggcggtctcgaacgacacggtggggt 446
|||| |||||||||||||||||||||||||||| ||| |||| ||| | ||| |||||
Sbjct: 368 gcttcggcgactgcggcgtcatccagaaccagatggccgtcttgaaggccaccacggggt 309
Query: 447 cggtggccaccaggtccgggttg 469
|| | | ||||||||||||||||
Sbjct: 308 cgctcgacaccaggtccgggttg 286
>gb|BE358858.1|BE358858 DG1_32_F07.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 655
Score = 117 bits (59), Expect = 2e-024
Identities = 169/203 (83%), Gaps = 2/203 (0%)
Strand = Plus / Minus
Query: 268 gccgcactcgaggccgccgttgatgatgttggtgacgacgccgtagcccggcagcctgcc 327
||||||||| | ||||||||||||||||||||| ||||| || || || ||||| ||
Sbjct: 323 gccgcactccatcccgccgttgatgatgttggtggtcacgccatacccggggagcctccc 264
Query: 328 ggcggccgtgtcagccgcggagggcgtcca-ctgccccgtcatgacgtcgtggcacgacg 386
||||| ||| | |||||||||||||| ||||| ||||||||| ||||||||||||
Sbjct: 263 cgcggcgcggtcgtcggcggagggcgtccagctgccg-gtcatgacggcgtggcacgacg 205
Query: 387 gcttgggcgactgcggcgtcatccagaaccagacggcggtctcgaacgacacggtggggt 446
|||| |||||||||||||||||||||||||||| ||| |||| ||| | ||| |||||
Sbjct: 204 gcttcggcgactgcggcgtcatccagaaccagatggccgtcttgaaggccaccacggggt 145
Query: 447 cggtggccaccaggtccgggttg 469
|| | | ||||||||||||||||
Sbjct: 144 cgctcgacaccaggtccgggttg 122
>gb|CD429983.1|CD429983 ETH1_16_A10.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_16_A10_A002 5', mRNA sequence
Length = 693
Score = 115 bits (58), Expect = 9e-024
Identities = 159/190 (83%), Gaps = 2/190 (1%)
Strand = Plus / Minus
Query: 281 ccgccgttgatgatgttggtgacgacgccgtagcccggcagcctgccggcggccgtgtca 340
||||||||||||||||||||| ||||| || || || ||||| || ||||| |||
Sbjct: 691 ccgccgttgatgatgttggtggtcacgccatacccggggagcctccccgcggcgcggtcg 632
Query: 341 gccgcggagggcgtcca-ctgccccgtcatgacgtcgtggcacgacggcttgggcgactg 399
| |||||||||||||| ||||| ||||||||| |||||||||||||||| ||||||||
Sbjct: 631 tcggcggagggcgtccagctgccg-gtcatgacggcgtggcacgacggcttcggcgactg 573
Query: 400 cggcgtcatccagaaccagacggcggtctcgaacgacacggtggggtcggtggccaccag 459
|||||||||||||||||||| ||| |||| ||| | ||| ||||||| | | ||||||
Sbjct: 572 cggcgtcatccagaaccagatggccgtcttgaaggccaccacggggtcgctcgacaccag 513
Query: 460 gtccgggttg 469
||||||||||
Sbjct: 512 gtccgggttg 503
>gb|CW282926.1|CW282926 104_759_11408975_148_35475_094 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11408975, DNA
sequence
Length = 426
Score = 107 bits (54), Expect = 2e-021
Identities = 81/90 (90%)
Strand = Plus / Minus
Query: 641 ccccaggcgtagggcccgtcgggcgccgtcgcccacccgcccgtcgtctcgtgggacgtc 700
||||| |||||||| |||||||| ||||||||||||||||| || |||||||| || ||
Sbjct: 419 ccccacgcgtagggaccgtcgggtgccgtcgcccacccgccggtggtctcgtgcgagatc 360
Query: 701 tgcgccaggaacgccgccagctcgcgcttc 730
||||||||||||||||||| ||||||||||
Sbjct: 359 tgcgccaggaacgccgccacctcgcgcttc 330
>gb|CW402098.1|CW402098 fsbb001f093d20k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f093d20, DNA
sequence
Length = 275
Score = 95.6 bits (48), Expect = 9e-018
Identities = 69/76 (90%)
Strand = Plus / Plus
Query: 621 gctcctccttgaagcagtagccccaggcgtagggcccgtcgggcgccgtcgcccacccgc 680
|||||| |||||||||||||||||||| | ||||||||||||| || |||| ||||||||
Sbjct: 160 gctcctgcttgaagcagtagccccaggagaagggcccgtcgggggcggtcggccacccgc 219
Query: 681 ccgtcgtctcgtggga 696
|||| |||||||||||
Sbjct: 220 ccgtggtctcgtggga 235
Score = 50.1 bits (25), Expect = 5e-004
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 522 aggatatctggatgggcccgcggccgtagtacttctt 558
|||| ||||||||||| ||||||||| ||||||||||
Sbjct: 67 aggagatctggatggggccgcggccgaagtacttctt 103
>gb|BE597906.1|BE597906 PI1_66_H02.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 708
Score = 87.7 bits (44), Expect = 2e-015
Identities = 205/258 (79%), Gaps = 3/258 (1%)
Strand = Plus / Minus
Query: 215 cagtatcgtttgtagaagccgatccggtcggcgacgcggctgtcagcgccatggccgcac 274
||||| || |||||||| ||||||||||| | || ||| ||| || || || ||||||
Sbjct: 408 cagtagcgcttgtagaacccgatccggtccgtcacccgggggtcggccccgtgcccgcac 349
Query: 275 tcgaggccgccgttgatgatgttggtgacgacgccgtagcccggc---agcctgccggcg 331
|||| |||||||||||||||||||||| |||||||| |||||| || ||||||
Sbjct: 348 tcgatcccgccgttgatgatgttggtgatcacgccgtaccccggcgcgccccggccggcc 289
Query: 332 gccgtgtcagccgcggagggcgtccactgccccgtcatgacgtcgtggcacgacggcttg 391
||| |||| ||||| | ||||||||||||||||| || || |||||||||||||||||
Sbjct: 288 gccctgtccgccgccgtcggcgtccactgccccgtgatcaccgcgtggcacgacggcttg 229
Query: 392 ggcgactgcggcgtcatccagaaccagacggcggtctcgaacgacacggtggggtcggtg 451
| || ||||||||||||||| | || |||| ||| || || |||||||||
Sbjct: 228 ttgtccctcgccgtcatccagaaccacagcgccgtcttgaaggataccacggggtcggtc 169
Query: 452 gccaccaggtccgggttg 469
||||||||||||||||||
Sbjct: 168 gccaccaggtccgggttg 151
>gb|BG102665.1|BG102665 RHIZ2_35_G08.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 382
Score = 79.8 bits (40), Expect = 5e-013
Identities = 82/96 (85%)
Strand = Plus / Minus
Query: 484 gccgatggcctggccggcgggcccgtagttgtagttgtaggatatctggatgggcccgcg 543
||||||||||| ||||| ||||||||||||||||| | || ||||| | || |||||
Sbjct: 192 gccgatggcctttccggcaggcccgtagttgtagttccacgagatctgcagcgggccgcg 133
Query: 544 gccgtagtacttcttccccgcggcgcacggccactg 579
||||||||||||||||||| |||||| ||||||||
Sbjct: 132 cccgtagtacttcttccccggggcgcatggccactg 97
>gb|CW470071.1|CW470071 fsbb001f223b16k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f223b16, DNA
sequence
Length = 430
Score = 77.8 bits (39), Expect = 2e-012
Identities = 54/59 (91%)
Strand = Plus / Minus
Query: 991 tgcagcacaggcagttggggcacagcgcgccgccggcctgcgacccgcactgctcggcg 1049
|||||||| ||||||||||||||||||||||| ||||||||| |||||||||| ||||
Sbjct: 415 tgcagcactggcagttggggcacagcgcgccggcggcctgcgtgccgcactgctgggcg 357
>gb|CW088904.1|CW088904 104_434_10948392_114_32602_096 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10948392, DNA
sequence
Length = 617
Score = 71.9 bits (36), Expect = 1e-010
Identities = 81/96 (84%)
Strand = Plus / Minus
Query: 484 gccgatggcctggccggcgggcccgtagttgtagttgtaggatatctggatgggcccgcg 543
||||||||||| ||||| ||||||||||||||||| | || || || | || |||||
Sbjct: 464 gccgatggccttcccggcaggcccgtagttgtagttccacgagatttgcagcgggccgcg 405
Query: 544 gccgtagtacttcttccccgcggcgcacggccactg 579
||||||||||||| ||||||||||||||||||||
Sbjct: 404 cccgtagtacttctgtcccgcggcgcacggccactg 369
>gb|CW098317.1|CW098317 104_464_11002941_148_34366_083 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11002941, DNA
sequence
Length = 422
Score = 71.9 bits (36), Expect = 1e-010
Identities = 81/96 (84%)
Strand = Plus / Plus
Query: 484 gccgatggcctggccggcgggcccgtagttgtagttgtaggatatctggatgggcccgcg 543
||||||||||| ||||| ||||||||||||||||| | || || || | || |||||
Sbjct: 326 gccgatggccttcccggcaggcccgtagttgtagttccacgagatttgcagcgggccgcg 385
Query: 544 gccgtagtacttcttccccgcggcgcacggccactg 579
||||||||||||| ||||||||||||||||||||
Sbjct: 386 cccgtagtacttctgtcccgcggcgcacggccactg 421
>gb|CW231901.1|CW231901 104_681_11211372_148_37350_042 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11211372, DNA
sequence
Length = 510
Score = 71.9 bits (36), Expect = 1e-010
Identities = 81/96 (84%)
Strand = Plus / Plus
Query: 484 gccgatggcctggccggcgggcccgtagttgtagttgtaggatatctggatgggcccgcg 543
||||||||||| ||||| || |||||||||||||| | || ||||| | || |||||
Sbjct: 51 gccgatggcctttccggcaggaccgtagttgtagttccacgagatctgcagcgggccgcg 110
Query: 544 gccgtagtacttcttccccgcggcgcacggccactg 579
||||||||||||||||||| |||||| ||||||||
Sbjct: 111 cccgtagtacttcttccccggggcgcatggccactg 146
>gb|CW285685.1|CW285685 104_763_11410466_148_35506_013 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11410466, DNA
sequence
Length = 285
Score = 71.9 bits (36), Expect = 1e-010
Identities = 81/96 (84%)
Strand = Plus / Plus
Query: 484 gccgatggcctggccggcgggcccgtagttgtagttgtaggatatctggatgggcccgcg 543
||||||||||| ||||| || |||||||||||||| | || ||||| | || |||||
Sbjct: 52 gccgatggcctttccggcaggaccgtagttgtagttccacgagatctgcagcgggccgcg 111
Query: 544 gccgtagtacttcttccccgcggcgcacggccactg 579
||||||||||||||||||| |||||| ||||||||
Sbjct: 112 cccgtagtacttcttccccggggcgcatggccactg 147
>gb|CW489486.1|CW489486 fsbb001f274h04f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f274h04, DNA
sequence
Length = 597
Score = 71.9 bits (36), Expect = 1e-010
Identities = 81/96 (84%)
Strand = Plus / Minus
Query: 484 gccgatggcctggccggcgggcccgtagttgtagttgtaggatatctggatgggcccgcg 543
||||||||||| ||||| || |||||||||||||| | || ||||| | || |||||
Sbjct: 159 gccgatggcctttccggcaggaccgtagttgtagttccacgagatctgcagcgggccgcg 100
Query: 544 gccgtagtacttcttccccgcggcgcacggccactg 579
||||||||||||||||||| |||||| ||||||||
Sbjct: 99 cccgtagtacttcttccccggggcgcatggccactg 64
>gb|AW680953.1|AW680953 WS1_9_A06.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA, mRNA
sequence
Length = 536
Score = 71.9 bits (36), Expect = 1e-010
Identities = 81/96 (84%)
Strand = Plus / Minus
Query: 484 gccgatggcctggccggcgggcccgtagttgtagttgtaggatatctggatgggcccgcg 543
||||||||||| ||||| ||||||||||||||||| | || || || | || |||||
Sbjct: 217 gccgatggccttcccggcaggcccgtagttgtagttccacgagatttgcagcgggccgcg 158
Query: 544 gccgtagtacttcttccccgcggcgcacggccactg 579
||||||||||||| ||||||||||||||||||||
Sbjct: 157 cccgtagtacttctgtcccgcggcgcacggccactg 122
>gb|AW746695.1|AW746695 WS1_54_E02.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 575
Score = 71.9 bits (36), Expect = 1e-010
Identities = 81/96 (84%)
Strand = Plus / Minus
Query: 484 gccgatggcctggccggcgggcccgtagttgtagttgtaggatatctggatgggcccgcg 543
||||||||||| ||||| ||||||||||||||||| | || || || | || |||||
Sbjct: 119 gccgatggccttcccggcaggcccgtagttgtagttccacgagatttgcagcgggccgcg 60
Query: 544 gccgtagtacttcttccccgcggcgcacggccactg 579
||||||||||||| ||||||||||||||||||||
Sbjct: 59 cccgtagtacttctgtcccgcggcgcacggccactg 24
>gb|AW922735.1|AW922735 DG1_45_B06.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 645
Score = 71.9 bits (36), Expect = 1e-010
Identities = 81/96 (84%)
Strand = Plus / Minus
Query: 484 gccgatggcctggccggcgggcccgtagttgtagttgtaggatatctggatgggcccgcg 543
||||||||||| ||||| ||||||||||||||||| | || || || | || |||||
Sbjct: 149 gccgatggccttcccggcaggcccgtagttgtagttccacgagatttgcagcgggccgcg 90
Query: 544 gccgtagtacttcttccccgcggcgcacggccactg 579
||||||||||||| ||||||||||||||||||||
Sbjct: 89 cccgtagtacttctgtcccgcggcgcacggccactg 54
>gb|AW924422.1|AW924422 WS1_69_C06.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 511
Score = 71.9 bits (36), Expect = 1e-010
Identities = 81/96 (84%)
Strand = Plus / Minus
Query: 484 gccgatggcctggccggcgggcccgtagttgtagttgtaggatatctggatgggcccgcg 543
||||||||||| ||||| ||||||||||||||||| | || || || | || |||||
Sbjct: 347 gccgatggccttcccggcaggcccgtagttgtagttccacgagatttgcagcgggccgcg 288
Query: 544 gccgtagtacttcttccccgcggcgcacggccactg 579
||||||||||||| ||||||||||||||||||||
Sbjct: 287 cccgtagtacttctgtcccgcggcgcacggccactg 252
>gb|BE357811.1|BE357811 DG1_22_D10.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 624
Score = 71.9 bits (36), Expect = 1e-010
Identities = 81/96 (84%)
Strand = Plus / Minus
Query: 484 gccgatggcctggccggcgggcccgtagttgtagttgtaggatatctggatgggcccgcg 543
||||||||||| ||||| || |||||||||||||| | || ||||| | || |||||
Sbjct: 139 gccgatggcctttccggcaggaccgtagttgtagttccacgagatctgcagcgggccgcg 80
Query: 544 gccgtagtacttcttccccgcggcgcacggccactg 579
||||||||||||||||||| |||||| ||||||||
Sbjct: 79 cccgtagtacttcttccccggggcgcatggccactg 44
>gb|BE363714.1|BE363714 WS1_69_C06.g2_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 705
Score = 71.9 bits (36), Expect = 1e-010
Identities = 81/96 (84%)
Strand = Plus / Minus
Query: 484 gccgatggcctggccggcgggcccgtagttgtagttgtaggatatctggatgggcccgcg 543
||||||||||| ||||| ||||||||||||||||| | || || || | || |||||
Sbjct: 219 gccgatggccttcccggcaggcccgtagttgtagttccacgagatttgcagcgggccgcg 160
Query: 544 gccgtagtacttcttccccgcggcgcacggccactg 579
||||||||||||| ||||||||||||||||||||
Sbjct: 159 cccgtagtacttctgtcccgcggcgcacggccactg 124
>gb|BG049497.1|BG049497 OV1_20_G04.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 561
Score = 71.9 bits (36), Expect = 1e-010
Identities = 81/96 (84%)
Strand = Plus / Minus
Query: 484 gccgatggcctggccggcgggcccgtagttgtagttgtaggatatctggatgggcccgcg 543
||||||||||| ||||| || |||||||||||||| | || ||||| | || |||||
Sbjct: 156 gccgatggcctttccggcaggaccgtagttgtagttccacgagatctgcagcgggccgcg 97
Query: 544 gccgtagtacttcttccccgcggcgcacggccactg 579
||||||||||||||||||| |||||| ||||||||
Sbjct: 96 cccgtagtacttcttccccggggcgcatggccactg 61
>gb|BG101749.1|BG101749 EM1_5_G10.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 519
Score = 71.9 bits (36), Expect = 1e-010
Identities = 81/96 (84%)
Strand = Plus / Minus
Query: 484 gccgatggcctggccggcgggcccgtagttgtagttgtaggatatctggatgggcccgcg 543
||||||||||| ||||| ||||||||||||||||| | || || || | || |||||
Sbjct: 311 gccgatggccttcccggcaggcccgtagttgtagttccacgagatttgcagcgggccgcg 252
Query: 544 gccgtagtacttcttccccgcggcgcacggccactg 579
||||||||||||| ||||||||||||||||||||
Sbjct: 251 cccgtagtacttctgtcccgcggcgcacggccactg 216
>gb|BG556500.1|BG556500 EM1_37_H12.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 441
Score = 71.9 bits (36), Expect = 1e-010
Identities = 81/96 (84%)
Strand = Plus / Minus
Query: 484 gccgatggcctggccggcgggcccgtagttgtagttgtaggatatctggatgggcccgcg 543
||||||||||| ||||| ||||||||||||||||| | || || || | || |||||
Sbjct: 106 gccgatggccttcccggcaggcccgtagttgtagttccacgagatttgcagcgggccgcg 47
Query: 544 gccgtagtacttcttccccgcggcgcacggccactg 579
||||||||||||| ||||||||||||||||||||
Sbjct: 46 cccgtagtacttctgtcccgcggcgcacggccactg 11
>gb|CD220455.1|CD220455 CCC1_67_F06.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_67_F06_A007 3', mRNA sequence
Length = 594
Score = 71.9 bits (36), Expect = 1e-010
Identities = 81/96 (84%)
Strand = Plus / Minus
Query: 484 gccgatggcctggccggcgggcccgtagttgtagttgtaggatatctggatgggcccgcg 543
||||||||||| ||||| ||||||||||||||||| | || || || | || |||||
Sbjct: 112 gccgatggccttcccggcaggcccgtagttgtagttccacgagatttgcagcgggccgcg 53
Query: 544 gccgtagtacttcttccccgcggcgcacggccactg 579
||||||||||||| ||||||||||||||||||||
Sbjct: 52 cccgtagtacttctgtcccgcggcgcacggccactg 17
>gb|CD221392.1|CD221392 CCC1_54_C04.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_54_C04_A007 3', mRNA sequence
Length = 622
Score = 71.9 bits (36), Expect = 1e-010
Identities = 81/96 (84%)
Strand = Plus / Minus
Query: 484 gccgatggcctggccggcgggcccgtagttgtagttgtaggatatctggatgggcccgcg 543
||||||||||| ||||| ||||||||||||||||| | || || || | || |||||
Sbjct: 105 gccgatggccttcccggcaggcccgtagttgtagttccacgagatttgcagcgggccgcg 46
Query: 544 gccgtagtacttcttccccgcggcgcacggccactg 579
||||||||||||| ||||||||||||||||||||
Sbjct: 45 cccgtagtacttctgtcccgcggcgcacggccactg 10
>gb|CD221556.1|CD221556 CCC1_55_F09.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_55_F09_A007 5', mRNA sequence
Length = 661
Score = 71.9 bits (36), Expect = 1e-010
Identities = 81/96 (84%)
Strand = Plus / Minus
Query: 484 gccgatggcctggccggcgggcccgtagttgtagttgtaggatatctggatgggcccgcg 543
||||||||||| ||||| ||||||||||||||||| | || || || | || |||||
Sbjct: 640 gccgatggccttcccggcaggcccgtagttgtagttccacgagatttgcagcgggccgcg 581
Query: 544 gccgtagtacttcttccccgcggcgcacggccactg 579
||||||||||||| ||||||||||||||||||||
Sbjct: 580 cccgtagtacttctgtcccgcggcgcacggccactg 545
>gb|CD221995.1|CD221995 CCC1_1_C09.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_1_C09_A007 3', mRNA sequence
Length = 637
Score = 71.9 bits (36), Expect = 1e-010
Identities = 81/96 (84%)
Strand = Plus / Minus
Query: 484 gccgatggcctggccggcgggcccgtagttgtagttgtaggatatctggatgggcccgcg 543
||||||||||| ||||| ||||||||||||||||| | || || || | || |||||
Sbjct: 227 gccgatggccttcccggcaggcccgtagttgtagttccacgagatttgcagcgggccgcg 168
Query: 544 gccgtagtacttcttccccgcggcgcacggccactg 579
||||||||||||| ||||||||||||||||||||
Sbjct: 167 cccgtagtacttctgtcccgcggcgcacggccactg 132
>gb|CD222353.1|CD222353 CCC1_21_F09.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_21_F09_A007 3', mRNA sequence
Length = 647
Score = 71.9 bits (36), Expect = 1e-010
Identities = 81/96 (84%)
Strand = Plus / Minus
Query: 484 gccgatggcctggccggcgggcccgtagttgtagttgtaggatatctggatgggcccgcg 543
||||||||||| ||||| ||||||||||||||||| | || || || | || |||||
Sbjct: 237 gccgatggccttcccggcaggcccgtagttgtagttccacgagatttgcagcgggccgcg 178
Query: 544 gccgtagtacttcttccccgcggcgcacggccactg 579
||||||||||||| ||||||||||||||||||||
Sbjct: 177 cccgtagtacttctgtcccgcggcgcacggccactg 142
>gb|CD222883.1|CD222883 CCC1_24_C04.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_24_C04_A007 5', mRNA sequence
Length = 667
Score = 71.9 bits (36), Expect = 1e-010
Identities = 81/96 (84%)
Strand = Plus / Minus
Query: 484 gccgatggcctggccggcgggcccgtagttgtagttgtaggatatctggatgggcccgcg 543
||||||||||| ||||| ||||||||||||||||| | || || || | || |||||
Sbjct: 646 gccgatggccttcccggcaggcccgtagttgtagttccacgagatttgcagcgggccgcg 587
Query: 544 gccgtagtacttcttccccgcggcgcacggccactg 579
||||||||||||| ||||||||||||||||||||
Sbjct: 586 cccgtagtacttctgtcccgcggcgcacggccactg 551
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 450,103
Number of Sequences: 832831
Number of extensions: 450103
Number of successful extensions: 146005
Number of sequences better than 0.5: 201
Number of HSP's better than 0.5 without gapping: 201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 145345
Number of HSP's gapped (non-prelim): 596
length of query: 1141
length of database: 491,359,669
effective HSP length: 20
effective length of query: 1121
effective length of database: 474,703,049
effective search space: 532142117929
effective search space used: 532142117929
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)