BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3802544.2.1
(814 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN135617.1|CN135617 OX1_38_A08.b1_A002 Oxidatively-stres... 846 0.0
gb|CN150914.1|CN150914 WOUND1_72_F06.b1_A002 Wounded leaves... 767 0.0
gb|CN137086.1|CN137086 OX1_55_C12.b1_A002 Oxidatively-stres... 733 0.0
gb|BE593932.1|BE593932 WS1_104_B07.g1_A002 Water-stressed 1... 712 0.0
gb|BE596606.1|BE596606 PI1_58_C11.g1_A002 Pathogen induced ... 712 0.0
gb|BE596607.1|BE596607 PI1_58_C12.g1_A002 Pathogen induced ... 712 0.0
gb|CN135696.1|CN135696 OX1_38_A08.g1_A002 Oxidatively-stres... 708 0.0
gb|BE362444.1|BE362444 DG1_86_G06.g1_A002 Dark Grown 1 (DG1... 676 0.0
gb|BE362745.1|BE362745 DG1_89_A06.b1_A002 Dark Grown 1 (DG1... 676 0.0
gb|BE362808.1|BE362808 DG1_89_A06.g2_A002 Dark Grown 1 (DG1... 664 0.0
gb|CD429697.1|CD429697 ETH1_15_D02.b1_A002 Ethylene-treated... 658 0.0
gb|CF758066.1|CF758066 DSAF1_26_H02.g1_A011 Drought-stresse... 658 0.0
gb|CD432656.1|CD432656 ETH1_25_A11.b1_A002 Ethylene-treated... 650 0.0
gb|CN130191.1|CN130191 RHOH1_39_H05.g1_A002 Acid- and alkal... 620 e-176
gb|CN137170.1|CN137170 OX1_55_C12.g1_A002 Oxidatively-stres... 605 e-171
gb|BM330867.1|BM330867 PIC1_57_E11.g1_A002 Pathogen-infecte... 575 e-162
gb|BE364608.2|BE364608 PI1_15_A07.g1_A002 Pathogen induced ... 539 e-151
gb|BE596684.1|BE596684 PI1_58_C12.b1_A002 Pathogen induced ... 513 e-144
gb|BE596683.1|BE596683 PI1_58_C11.b1_A002 Pathogen induced ... 496 e-138
gb|CD432670.1|CD432670 ETH1_25_A11.g1_A002 Ethylene-treated... 482 e-134
gb|BE356802.1|BE356802 DG1_12_E08.g1_A002 Dark Grown 1 (DG1... 438 e-121
gb|CD425348.1|CD425348 SA1_11_G07.g1_A002 Salicylic acid-tr... 381 e-104
gb|CX608544.1|CX608544 ANR1_39_E12.b1_A002 Anaerobic roots ... 355 4e-096
gb|BE362389.1|BE362389 DG1_86_G06.b1_A002 Dark Grown 1 (DG1... 341 6e-092
gb|CF431842.1|CF431842 NIT1_11_D11.b1_A002 Nitrogen-deficie... 337 1e-090
gb|BE356707.1|BE356707 DG1_12_E08.b1_A002 Dark Grown 1 (DG1... 331 6e-089
gb|BE594253.1|BE594253 WS1_104_B07.b1_A002 Water-stressed 1... 331 6e-089
gb|BM318563.1|BM318563 PI1_15_A07.b9_A002 Pathogen induced ... 281 5e-074
gb|CD429828.1|CD429828 ETH1_15_D02.g1_A002 Ethylene-treated... 268 7e-070
gb|CW227372.1|CW227372 104_665_11205380_148_37225_068 Sorgh... 266 3e-069
gb|CD425220.1|CD425220 SA1_11_G07.b1_A002 Salicylic acid-tr... 206 2e-051
gb|CW259601.1|CW259601 104_726_11228515_148_35186_080 Sorgh... 200 1e-049
gb|BM326480.1|BM326480 PIC1_57_E11.b1_A002 Pathogen-infecte... 180 1e-043
gb|CW259600.1|CW259600 104_726_11228515_116_35190_080 Sorgh... 119 4e-025
gb|CW450184.1|CW450184 fsbb001f188l06f0 Sorghum methylation... 46 0.005
gb|CN150991.1|CN150991 WOUND1_72_F06.g1_A002 Wounded leaves... 40 0.31
>gb|CN135617.1|CN135617 OX1_38_A08.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_38_A08_A002 3', mRNA sequence
Length = 769
Score = 846 bits (427), Expect = 0.0
Identities = 583/637 (91%)
Strand = Plus / Minus
Query: 121 gttacacatacctcttcatgtactcatccatgcgggtatactgaacctctgggtacaaca 180
|||| ||||| || ||||| ||||| |||||||||||||||||||||||||||||||| |
Sbjct: 637 gttatacatatcttttcatatactcgtccatgcgggtatactgaacctctgggtacaata 578
Query: 181 gagtagcgtctgctccatcgtcgccgatttcaaaatttgtcaagcaaccttcatagaaaa 240
||||| | ||||||||||| || || |||||||| |||||||||||||||||||||||||
Sbjct: 577 gagtaccctctgctccatcatcaccaatttcaaagtttgtcaagcaaccttcatagaaaa 518
Query: 241 tgtggtaatagtgtcccactccggcttgattggccaagtcagtacctttcattgaagcca 300
|||||||||||||||||||||| |||||||||| ||||||||| |||||||||||||||
Sbjct: 517 tgtggtaatagtgtcccactccaacttgattggcgaagtcagtatctttcattgaagcca 458
Query: 301 agaattcatctgcaggaatgtggattttctccagaacgtttccggaaagcttttcccact 360
|||||||||| |||||||||||||||||||||||||| ||||| ||||| ||||||||
Sbjct: 457 agaattcatccgcaggaatgtggattttctccagaacatttccagaaaggttttcccatg 398
Query: 361 tcgagataacatcgttttgagtcaagatgttttctggtggtcttatgtatagtgtcttgt 420
| ||||||||||| ||||||||||||||||||||||||||||| | | ||| ||||||||
Sbjct: 397 ttgagataacatcattttgagtcaagatgttttctggtggtctcagggatattgtcttgt 338
Query: 421 tcaatgcgcgaggatcatcaacagacttgattgtatacgttgcaacatcgtcttcatcac 480
|||||| ||||||||||||||||||||| |||| ||| ||||||||||||||||||||||
Sbjct: 337 tcaatgtgcgaggatcatcaacagacttcattggatatgttgcaacatcgtcttcatcac 278
Query: 481 agaatatagctttgacattgccgtctccatatacatgaactttttctttgggcggcaaaa 540
| |||||| |||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct: 277 aaaatataactttgacattgccgtctccatatacatgaactttctctttgggtggcaaaa 218
Query: 541 gggtgcgcatctgacataggtttgggcaaaagtaagcagcaaagcaattggcagaaacat 600
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 gggtacgcatttgacataggtttgggcaaaagtaagcagcaaagcaattggcagaaacat 158
Query: 601 aggtgtgaggaatgttggcatcttctattgcacgccttaggtccatcttttcatcaaatg 660
||||||| ||||||||||| ||||||||||| || ||||||||||||||||| |||||||
Sbjct: 157 aggtgtggggaatgttggcctcttctattgcccgtcttaggtccatcttttcttcaaatg 98
Query: 661 taacccttcctggttcaagagcatgccccatcttggatggatccatgccgaattccgatg 720
|||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct: 97 taacccttcctggttcaagagcatgcgtcatcttggatggatccatgccgaattctgatg 38
Query: 721 gtataaaacnnnnnntgttcccagcctccttgatagc 757
||||||||| |||| || ||||||||||||||
Sbjct: 37 gtataaaacgcttgatgttgccggcctccttgatagc 1
>gb|CN150914.1|CN150914 WOUND1_72_F06.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_72_F06_A002 3', mRNA sequence
Length = 707
Score = 767 bits (387), Expect = 0.0
Identities = 513/555 (92%)
Strand = Plus / Minus
Query: 121 gttacacatacctcttcatgtactcatccatgcgggtatactgaacctctgggtacaaca 180
|||| ||||| || ||||| ||||| |||||||||||||||||||||||||||||||| |
Sbjct: 555 gttatacatatcttttcatatactcgtccatgcgggtatactgaacctctgggtacaata 496
Query: 181 gagtagcgtctgctccatcgtcgccgatttcaaaatttgtcaagcaaccttcatagaaaa 240
||||| | ||||||||||| || || |||||||| |||||||||||||||||||||||||
Sbjct: 495 gagtaccctctgctccatcatcaccaatttcaaagtttgtcaagcaaccttcatagaaaa 436
Query: 241 tgtggtaatagtgtcccactccggcttgattggccaagtcagtacctttcattgaagcca 300
|||||||||||||||||||||| |||||||||| ||||||||| |||||||||||||||
Sbjct: 435 tgtggtaatagtgtcccactccaacttgattggcgaagtcagtatctttcattgaagcca 376
Query: 301 agaattcatctgcaggaatgtggattttctccagaacgtttccggaaagcttttcccact 360
|||||||||| |||||||||||||||||||||||||| ||||| ||||| ||||||||
Sbjct: 375 agaattcatccgcaggaatgtggattttctccagaacatttccagaaaggttttcccatg 316
Query: 361 tcgagataacatcgttttgagtcaagatgttttctggtggtcttatgtatagtgtcttgt 420
| ||||||||||| ||||||| ||||||||||||||||||||| | ||||| ||||||||
Sbjct: 315 ttgagataacatccttttgagccaagatgttttctggtggtctcaggtatattgtcttgt 256
Query: 421 tcaatgcgcgaggatcatcaacagacttgattgtatacgttgcaacatcgtcttcatcac 480
|||||| ||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct: 255 tcaatgtgcgaggatcatcaacagacttcattgtatatgttgcaacatcgtcttcatcac 196
Query: 481 agaatatagctttgacattgccgtctccatatacatgaactttttctttgggcggcaaaa 540
| |||||| |||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct: 195 aaaatataactttgacattgccgtctccatatacatgaactttctctttgggtggcaaaa 136
Query: 541 gggtgcgcatctgacataggtttgggcaaaagtaagcagcaaagcaattggcagaaacat 600
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 gggtacgcatttgacataggtttgggcaaaagtaagcagcaaagcaattggcagaaacat 76
Query: 601 aggtgtgaggaatgttggcatcttctattgcacgccttaggtccatcttttcatcaaatg 660
||||||| ||||||||||| ||||||||||| || ||||||||||||||||| |||||||
Sbjct: 75 aggtgtggggaatgttggcctcttctattgcccgtcttaggtccatcttttcttcaaatg 16
Query: 661 taacccttcctggtt 675
|||||||||||||||
Sbjct: 15 taacccttcctggtt 1
>gb|CN137086.1|CN137086 OX1_55_C12.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_55_C12_A002 3', mRNA sequence
Length = 730
Score = 733 bits (370), Expect = 0.0
Identities = 523/574 (91%)
Strand = Plus / Minus
Query: 135 ttcatgtactcatccatgcgggtatactgaacctctgggtacaacagagtagcgtctgct 194
|||||||||||| ||||||| |||||||||||||| ||| |||| |||||||| ||||||
Sbjct: 574 ttcatgtactcacccatgcgagtatactgaacctccgggcacaatagagtagcctctgct 515
Query: 195 ccatcgtcgccgatttcaaaatttgtcaagcaaccttcatagaaaatgtggtaatagtgt 254
|| || ||||| ||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct: 514 ccgtcatcgccaatttcaaaatttgtcaagcaaccttcatagaaaatatggtaaaagtgt 455
Query: 255 cccactccggcttgattggccaagtcagtacctttcattgaagccaagaattcatctgca 314
||||| || |||||||||| |||| |||| |||||||||||||||||||||||||| |
Sbjct: 454 cccacaacgacttgattggcgaagttagtatctttcattgaagccaagaattcatctata 395
Query: 315 ggaatgtggattttctccagaacgtttccggaaagcttttcccacttcgagataacatcg 374
||||||||||||||||| ||||| ||||| ||||| |||||||| || |||||||||||
Sbjct: 394 ggaatgtggattttctcaagaacatttccagaaaggttttcccattttgagataacatca 335
Query: 375 ttttgagtcaagatgttttctggtggtcttatgtatagtgtcttgttcaatgcgcgagga 434
||||||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct: 334 ttttgagtcaaaatgttttctggtggtcttaagtatattgtcttgttcaatgcgcgagga 275
Query: 435 tcatcaacagacttgattgtatacgttgcaacatcgtcttcatcacagaatatagctttg 494
|||||||||||||| | |||||| ||||||||||||||||||||||| |||||| ||||
Sbjct: 274 tcatcaacagacttcactgtatatgttgcaacatcgtcttcatcacaaaatataacttta 215
Query: 495 acattgccgtctccatatacatgaactttttctttgggcggcaaaagggtgcgcatctga 554
||||||||||||||||| | ||||||| |||||||| ||||||||||||| ||| |||
Sbjct: 214 acattgccgtctccataaatgagaactttctctttgggtggcaaaagggtgcccatttga 155
Query: 555 cataggtttgggcaaaagtaagcagcaaagcaattggcagaaacataggtgtgaggaatg 614
||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct: 154 cataggtttgggcaaaagtaaccagcaaagcaattggcagaaacataggtgtggggaatg 95
Query: 615 ttggcatcttctattgcacgccttaggtccatcttttcatcaaatgtaacccttcctggt 674
||||| ||||| ||||| || ||||| |||||||||||||||||||||| ||||||||||
Sbjct: 94 ttggcctcttcaattgcccgtcttagctccatcttttcatcaaatgtaatccttcctggt 35
Query: 675 tcaagagcatgccccatcttggatggatccatgc 708
||||||||||||||||||||||||||||||||||
Sbjct: 34 tcaagagcatgccccatcttggatggatccatgc 1
>gb|BE593932.1|BE593932 WS1_104_B07.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 628
Score = 712 bits (359), Expect = 0.0
Identities = 473/511 (92%)
Strand = Plus / Minus
Query: 121 gttacacatacctcttcatgtactcatccatgcgggtatactgaacctctgggtacaaca 180
|||| ||||| || ||||| ||||| |||||||||||||||||||||||||||||||| |
Sbjct: 515 gttatacatatcttttcatatactcgtccatgcgggtatactgaacctctgggtacaata 456
Query: 181 gagtagcgtctgctccatcgtcgccgatttcaaaatttgtcaagcaaccttcatagaaaa 240
||||| | ||||||||||| || || |||||||| |||||||||||||||||||||||||
Sbjct: 455 gagtaccctctgctccatcatcaccaatttcaaagtttgtcaagcaaccttcatagaaaa 396
Query: 241 tgtggtaatagtgtcccactccggcttgattggccaagtcagtacctttcattgaagcca 300
|||||||||||||||||||||| |||||||||| ||||||||| |||||||||||||||
Sbjct: 395 tgtggtaatagtgtcccactccaacttgattggcgaagtcagtatctttcattgaagcca 336
Query: 301 agaattcatctgcaggaatgtggattttctccagaacgtttccggaaagcttttcccact 360
|||||||||| |||||||||||||||||||||||||| ||||| ||||| ||||||||
Sbjct: 335 agaattcatccgcaggaatgtggattttctccagaacatttccagaaaggttttcccatg 276
Query: 361 tcgagataacatcgttttgagtcaagatgttttctggtggtcttatgtatagtgtcttgt 420
| ||||||||||| ||||||||||||||||||||||||||||| | ||||| ||||||||
Sbjct: 275 ttgagataacatcattttgagtcaagatgttttctggtggtctcaggtatattgtcttgt 216
Query: 421 tcaatgcgcgaggatcatcaacagacttgattgtatacgttgcaacatcgtcttcatcac 480
|||||| ||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct: 215 tcaatgtgcgaggatcatcaacagacttcattgtatatgttgcaacatcgtcttcatcac 156
Query: 481 agaatatagctttgacattgccgtctccatatacatgaactttttctttgggcggcaaaa 540
| |||||| |||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct: 155 aaaatataactttgacattgccgtctccatatacatgaactttctctttgggtggcaaaa 96
Query: 541 gggtgcgcatctgacataggtttgggcaaaagtaagcagcaaagcaattggcagaaacat 600
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 gggtacgcatttgacataggtttgggcaaaagtaagcagcaaagcaattggcagaaacat 36
Query: 601 aggtgtgaggaatgttggcatcttctattgc 631
||||||| ||||||||||| |||||||||||
Sbjct: 35 aggtgtggggaatgttggcctcttctattgc 5
>gb|BE596606.1|BE596606 PI1_58_C11.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 617
Score = 712 bits (359), Expect = 0.0
Identities = 473/511 (92%)
Strand = Plus / Minus
Query: 121 gttacacatacctcttcatgtactcatccatgcgggtatactgaacctctgggtacaaca 180
|||| ||||| || ||||| ||||| |||||||||||||||||||||||||||||||| |
Sbjct: 512 gttatacatatcttttcatatactcgtccatgcgggtatactgaacctctgggtacaata 453
Query: 181 gagtagcgtctgctccatcgtcgccgatttcaaaatttgtcaagcaaccttcatagaaaa 240
||||| | ||||||||||| || || |||||||| |||||||||||||||||||||||||
Sbjct: 452 gagtaccctctgctccatcatcaccaatttcaaagtttgtcaagcaaccttcatagaaaa 393
Query: 241 tgtggtaatagtgtcccactccggcttgattggccaagtcagtacctttcattgaagcca 300
|||||||||||||||||||||| |||||||||| ||||||||| |||||||||||||||
Sbjct: 392 tgtggtaatagtgtcccactccaacttgattggcgaagtcagtatctttcattgaagcca 333
Query: 301 agaattcatctgcaggaatgtggattttctccagaacgtttccggaaagcttttcccact 360
|||||||||| |||||||||||||||||||||||||| ||||| ||||| ||||||||
Sbjct: 332 agaattcatccgcaggaatgtggattttctccagaacatttccagaaaggttttcccatg 273
Query: 361 tcgagataacatcgttttgagtcaagatgttttctggtggtcttatgtatagtgtcttgt 420
| ||||||||||| ||||||||||||||||||||||||||||| | ||||| ||||||||
Sbjct: 272 ttgagataacatcattttgagtcaagatgttttctggtggtctcaggtatattgtcttgt 213
Query: 421 tcaatgcgcgaggatcatcaacagacttgattgtatacgttgcaacatcgtcttcatcac 480
|||||| ||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct: 212 tcaatgtgcgaggatcatcaacagacttcattgtatatgttgcaacatcgtcttcatcac 153
Query: 481 agaatatagctttgacattgccgtctccatatacatgaactttttctttgggcggcaaaa 540
| |||||| |||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct: 152 aaaatataactttgacattgccgtctccatatacatgaactttctctttgggtggcaaaa 93
Query: 541 gggtgcgcatctgacataggtttgggcaaaagtaagcagcaaagcaattggcagaaacat 600
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92 gggtacgcatttgacataggtttgggcaaaagtaagcagcaaagcaattggcagaaacat 33
Query: 601 aggtgtgaggaatgttggcatcttctattgc 631
||||||| ||||||||||| |||||||||||
Sbjct: 32 aggtgtggggaatgttggcctcttctattgc 2
>gb|BE596607.1|BE596607 PI1_58_C12.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 626
Score = 712 bits (359), Expect = 0.0
Identities = 473/511 (92%)
Strand = Plus / Minus
Query: 121 gttacacatacctcttcatgtactcatccatgcgggtatactgaacctctgggtacaaca 180
|||| ||||| || ||||| ||||| |||||||||||||||||||||||||||||||| |
Sbjct: 512 gttatacatatcttttcatatactcgtccatgcgggtatactgaacctctgggtacaata 453
Query: 181 gagtagcgtctgctccatcgtcgccgatttcaaaatttgtcaagcaaccttcatagaaaa 240
||||| | ||||||||||| || || |||||||| |||||||||||||||||||||||||
Sbjct: 452 gagtaccctctgctccatcatcaccaatttcaaagtttgtcaagcaaccttcatagaaaa 393
Query: 241 tgtggtaatagtgtcccactccggcttgattggccaagtcagtacctttcattgaagcca 300
|||||||||||||||||||||| |||||||||| ||||||||| |||||||||||||||
Sbjct: 392 tgtggtaatagtgtcccactccaacttgattggcgaagtcagtatctttcattgaagcca 333
Query: 301 agaattcatctgcaggaatgtggattttctccagaacgtttccggaaagcttttcccact 360
|||||||||| |||||||||||||||||||||||||| ||||| ||||| ||||||||
Sbjct: 332 agaattcatccgcaggaatgtggattttctccagaacatttccagaaaggttttcccatg 273
Query: 361 tcgagataacatcgttttgagtcaagatgttttctggtggtcttatgtatagtgtcttgt 420
| ||||||||||| ||||||||||||||||||||||||||||| | ||||| ||||||||
Sbjct: 272 ttgagataacatcattttgagtcaagatgttttctggtggtctcaggtatattgtcttgt 213
Query: 421 tcaatgcgcgaggatcatcaacagacttgattgtatacgttgcaacatcgtcttcatcac 480
|||||| ||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct: 212 tcaatgtgcgaggatcatcaacagacttcattgtatatgttgcaacatcgtcttcatcac 153
Query: 481 agaatatagctttgacattgccgtctccatatacatgaactttttctttgggcggcaaaa 540
| |||||| |||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct: 152 aaaatataactttgacattgccgtctccatatacatgaactttctctttgggtggcaaaa 93
Query: 541 gggtgcgcatctgacataggtttgggcaaaagtaagcagcaaagcaattggcagaaacat 600
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92 gggtacgcatttgacataggtttgggcaaaagtaagcagcaaagcaattggcagaaacat 33
Query: 601 aggtgtgaggaatgttggcatcttctattgc 631
||||||| ||||||||||| |||||||||||
Sbjct: 32 aggtgtggggaatgttggcctcttctattgc 2
>gb|CN135696.1|CN135696 OX1_38_A08.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_38_A08_A002 5', mRNA sequence
Length = 840
Score = 708 bits (357), Expect = 0.0
Identities = 491/540 (90%)
Strand = Plus / Minus
Query: 245 gtaatagtgtcccactccggcttgattggccaagtcagtacctttcattgaagccaagaa 304
|||||||||||||||||| |||||||||| ||||||||| |||||||||||||||||||
Sbjct: 840 gtaatagtgtcccactccaacttgattggcgaagtcagtatctttcattgaagccaagaa 781
Query: 305 ttcatctgcaggaatgtggattttctccagaacgtttccggaaagcttttcccacttcga 364
|||||| |||||||||||||||||||||||||| ||||| ||||| ||| |||| | ||
Sbjct: 780 ttcatccgcaggaatgtggattttctccagaacatttccagaaaggtttncccatgttga 721
Query: 365 gataacatcgttttgagtcaagatgttttctggtggtcttatgtatagtgtcttgttcaa 424
||||||||| || |||||||||||||||||||||||||| | ||||| ||||||||||||
Sbjct: 720 gataacatcattctgagtcaagatgttttctggtggtctcaggtatattgtcttgttcaa 661
Query: 425 tgcgcgaggatcatcaacagacttgattgtatacgttgcaacatcgtcttcatcacagaa 484
|| ||||||||||||||||||||| || ||||| ||||||||||||||||||||||| ||
Sbjct: 660 tgtgcgaggatcatcaacagacttcatggtatatgttgcaacatcgtcttcatcacaaaa 601
Query: 485 tatagctttgacattgccgtctccatatacatgaactttttctttgggcggcaaaagggt 544
|||| |||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct: 600 tataactttgacattgccgtctccatatacatgaactttctctttgggtggcaaaagggt 541
Query: 545 gcgcatctgacataggtttgggcaaaagtaagcagcaaagcaattggcagaaacataggt 604
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 acgcatttgacataggtttgggcaaaagtaagcagcaaagcaattggcagaaacataggt 481
Query: 605 gtgaggaatgttggcatcttctattgcacgccttaggtccatcttttcatcaaatgtaac 664
||| ||||||||||| ||||||||||| || ||||||||||||||||| |||||||||||
Sbjct: 480 gtggggaatgttggcctcttctattgcccgtcttaggtccatcttttcttcaaatgtaac 421
Query: 665 ccttcctggttcaagagcatgccccatcttggatggatccatgccgaattccgatggtat 724
|||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct: 420 ccttcctggttcaagagcatgcgtcatcttggatggatccatgccgaattctgatggtat 361
Query: 725 aaaacnnnnnntgttcccagcctccttgatagcctcgacgngnnnatgctgcanngagag 784
||||| |||| || ||||||||||||||||||||| | |||||||| |||||
Sbjct: 360 aaaacgcttgatgttgccggcctccttgatagcctcgacgagcctatgctgcagggagag 301
>gb|BE362444.1|BE362444 DG1_86_G06.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 510
Score = 676 bits (341), Expect = 0.0
Identities = 466/509 (91%), Gaps = 9/509 (1%)
Strand = Plus / Minus
Query: 147 tccatgcgggtatactgaacctctgggtacaacagagtagcgtctgctccatcgtcgccg 206
|||||||||||||||||||||||||||||||| |||||| | ||||||||||| || ||
Sbjct: 509 tccatgcgggtatactgaacctctgggtacaatagagtaccctctgctccatcatcacca 450
Query: 207 atttcaaaatttgtcaagcaaccttcatagaaaatgtggtaatagtgtcccactccggct 266
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 449 atttcaaagtttgtcaagcaaccttcatagaaaatgtggtaatagtgtcccactccaact 390
Query: 267 tgattggccaagtcagta---------cctttcattgaagccaagaattcatctgcagga 317
|||||||| ||||||||| |||||||||||||||||||||||||| ||||||
Sbjct: 389 tgattggcgaagtcagtatctgcacatcctttcattgaagccaagaattcatccgcagga 330
Query: 318 atgtggattttctccagaacgtttccggaaagcttttcccacttcgagataacatcgttt 377
|||||||||||||||||||| ||||| ||||| |||||||| | ||||||||||| |||
Sbjct: 329 atgtggattttctccagaacatttccagaaaggttttcccatgttgagataacatcattt 270
Query: 378 tgagtcaagatgttttctggtggtcttatgtatagtgtcttgttcaatgcgcgaggatca 437
|||||||||||||||||||||||||| | ||||| |||||||||||||| ||||||||||
Sbjct: 269 tgagtcaagatgttttctggtggtctcaggtatattgtcttgttcaatgtgcgaggatca 210
Query: 438 tcaacagacttgattgtatacgttgcaacatcgtcttcatcacagaatatagctttgaca 497
||||||||||| |||||||| ||||||||||||||||||||||| |||||| ||||||||
Sbjct: 209 tcaacagacttcattgtatatgttgcaacatcgtcttcatcacaaaatataactttgaca 150
Query: 498 ttgccgtctccatatacatgaactttttctttgggcggcaaaagggtgcgcatctgacat 557
|||||||||||||||||||||||||| |||||||| ||||||||||| ||||| ||||||
Sbjct: 149 ttgccgtctccatatacatgaactttctctttgggtggcaaaagggtacgcatttgacat 90
Query: 558 aggtttgggcaaaagtaagcagcaaagcaattggcagaaacataggtgtgaggaatgttg 617
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 89 aggtttgggcaaaagtaagcagcaaagcaattggcagaaacataggtgtggggaatgttg 30
Query: 618 gcatcttctattgcacgccttaggtccat 646
|| ||||||||||| || |||||||||||
Sbjct: 29 gcctcttctattgcccgtcttaggtccat 1
>gb|BE362745.1|BE362745 DG1_89_A06.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 610
Score = 676 bits (341), Expect = 0.0
Identities = 464/509 (91%)
Strand = Plus / Minus
Query: 276 aagtcagtacctttcattgaagccaagaattcatctgcaggaatgtggattttctccaga 335
||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 608 aagtcagtatctttcattgaagccaagaattcatccgcaggaatgtggattttctccaga 549
Query: 336 acgtttccggaaagcttttcccacttcgagataacatcgttttgagtcaagatgttttct 395
|| ||||| ||||| |||||||| | ||||||||||| || ||||||||||||||||||
Sbjct: 548 acatttccagaaaggttttcccatgttgagataacatcattctgagtcaagatgttttct 489
Query: 396 ggtggtcttatgtatagtgtcttgttcaatgcgcgaggatcatcaacagacttgattgta 455
|||||||| | ||||| |||||||||||||| ||||||||||||||||||||| ||||||
Sbjct: 488 ggtggtctcaggtatattgtcttgttcaatgtgcgaggatcatcaacagacttcattgta 429
Query: 456 tacgttgcaacatcgtcttcatcacagaatatagctttgacattgccgtctccatataca 515
|| ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct: 428 tatgttgcaacatcgtcttcatcacaaaatataactttgacattgccgtctccatataca 369
Query: 516 tgaactttttctttgggcggcaaaagggtgcgcatctgacataggtttgggcaaaagtaa 575
|||||||| |||||||| ||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 368 tgaactttctctttgggtggcaaaagggtacgcatttgacataggtttgggcaaaagtaa 309
Query: 576 gcagcaaagcaattggcagaaacataggtgtgaggaatgttggcatcttctattgcacgc 635
|||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||
Sbjct: 308 gcagcaaagcaattggcagaaacataggtgtggggaatgttggcctcttctattgcccgt 249
Query: 636 cttaggtccatcttttcatcaaatgtaacccttcctggttcaagagcatgccccatcttg 695
|||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct: 248 gttaggtccatcttttcttcaaatgtaacccttcctggttcaagagcatgcgtcatcttg 189
Query: 696 gatggatccatgccgaattccgatggtataaaacnnnnnntgttcccagcctccttgata 755
|||||||||||||||||||| ||||||||||||| |||| || ||||||||||||
Sbjct: 188 gatggatccatgccgaattctgatggtataaaacgcttgatgttgccggcctccttgata 129
Query: 756 gcctcgacgngnnnatgctgcanngagag 784
||||||||| | |||||||| |||||
Sbjct: 128 gcctcgacgagcctatgctgcagggagag 100
>gb|BE362808.1|BE362808 DG1_89_A06.g2_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 589
Score = 664 bits (335), Expect = 0.0
Identities = 449/487 (92%)
Strand = Plus / Minus
Query: 121 gttacacatacctcttcatgtactcatccatgcgggtatactgaacctctgggtacaaca 180
|||| ||||| || ||||| ||||| |||||||||||||||||||||||||||||||| |
Sbjct: 487 gttatacatatcttttcatatactcgtccatgcgggtatactgaacctctgggtacaata 428
Query: 181 gagtagcgtctgctccatcgtcgccgatttcaaaatttgtcaagcaaccttcatagaaaa 240
||||| | ||||||||||| || || |||||||| |||||||||||||||||||||||||
Sbjct: 427 gagtaccctctgctccatcatcaccaatttcaaagtttgtcaagcaaccttcatagaaaa 368
Query: 241 tgtggtaatagtgtcccactccggcttgattggccaagtcagtacctttcattgaagcca 300
|||||||||||||||||||||| |||||||||| ||||||||| |||||||||||||||
Sbjct: 367 tgtggtaatagtgtcccactccaacttgattggcgaagtcagtatctttcattgaagcca 308
Query: 301 agaattcatctgcaggaatgtggattttctccagaacgtttccggaaagcttttcccact 360
|||||| ||| |||||||||||||||||||||||||| ||||| ||||| ||||||||
Sbjct: 307 agaattgatccgcaggaatgtggattttctccagaacatttccagaaaggttttcccatg 248
Query: 361 tcgagataacatcgttttgagtcaagatgttttctggtggtcttatgtatagtgtcttgt 420
| ||||||||||| ||||||||||||||||||||||||||||| | ||||| ||||||||
Sbjct: 247 ttgagataacatcattttgagtcaagatgttttctggtggtctcaggtatattgtcttgt 188
Query: 421 tcaatgcgcgaggatcatcaacagacttgattgtatacgttgcaacatcgtcttcatcac 480
|||||| ||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct: 187 tcaatgtgcgaggatcatcaacagacttcattgtatatgttgcaacatcgtcttcatcac 128
Query: 481 agaatatagctttgacattgccgtctccatatacatgaactttttctttgggcggcaaaa 540
| |||||| ||||||||||||||||| |||||||||||||||| |||||||| |||||||
Sbjct: 127 aaaatataactttgacattgccgtctacatatacatgaactttctctttgggtggcaaaa 68
Query: 541 gggtgcgcatctgacataggtttgggcaaaagtaagcagcaaagcaattggcagaaacat 600
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67 gggtacgcatttgacataggtttgggcaaaagtaagcagcaaagcaattggcagaaacat 8
Query: 601 aggtgtg 607
|||||||
Sbjct: 7 aggtgtg 1
>gb|CD429697.1|CD429697 ETH1_15_D02.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_15_D02_A002 3', mRNA sequence
Length = 591
Score = 658 bits (332), Expect = 0.0
Identities = 443/480 (92%)
Strand = Plus / Minus
Query: 121 gttacacatacctcttcatgtactcatccatgcgggtatactgaacctctgggtacaaca 180
|||| ||||| || ||||| ||||| |||||||||||||||||||||||||||||||| |
Sbjct: 480 gttatacatatcttttcatatactcgtccatgcgggtatactgaacctctgggtacaata 421
Query: 181 gagtagcgtctgctccatcgtcgccgatttcaaaatttgtcaagcaaccttcatagaaaa 240
||||| | ||||||||||| || || |||||||| |||||||||||||||||||||||||
Sbjct: 420 gagtaccctctgctccatcatcaccaatttcaaagtttgtcaagcaaccttcatagaaaa 361
Query: 241 tgtggtaatagtgtcccactccggcttgattggccaagtcagtacctttcattgaagcca 300
|||||||||||||||||||||| |||||||||| | ||||||| |||||||||||||||
Sbjct: 360 tgtggtaatagtgtcccactccaacttgattggcgaggtcagtatctttcattgaagcca 301
Query: 301 agaattcatctgcaggaatgtggattttctccagaacgtttccggaaagcttttcccact 360
|||||||||| |||||||||||||||||||||||||| ||||| ||||| ||||||||
Sbjct: 300 agaattcatccgcaggaatgtggattttctccagaacatttccagaaaggttttcccatg 241
Query: 361 tcgagataacatcgttttgagtcaagatgttttctggtggtcttatgtatagtgtcttgt 420
| ||||||||||| ||||||||||||||||||||||||||||| | ||||| ||||||||
Sbjct: 240 ttgagataacatcattttgagtcaagatgttttctggtggtctcaggtatattgtcttgt 181
Query: 421 tcaatgcgcgaggatcatcaacagacttgattgtatacgttgcaacatcgtcttcatcac 480
|||||| ||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct: 180 tcaatgtgcgaggatcatcaacagacttcattgtatatgttgcaacatcgtcttcatcac 121
Query: 481 agaatatagctttgacattgccgtctccatatacatgaactttttctttgggcggcaaaa 540
| |||||| |||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct: 120 aaaatataactttgacattgccgtctccatatacatgaactttctctttgggtggcaaaa 61
Query: 541 gggtgcgcatctgacataggtttgggcaaaagtaagcagcaaagcaattggcagaaacat 600
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60 gggtacgcatttgacataggtttgggcaaaagtaagcagcaaagcaattggcagaaacat 1
>gb|CF758066.1|CF758066 DSAF1_26_H02.g1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_26_H02_A011 3', mRNA sequence
Length = 593
Score = 658 bits (332), Expect = 0.0
Identities = 437/472 (92%)
Strand = Plus / Minus
Query: 121 gttacacatacctcttcatgtactcatccatgcgggtatactgaacctctgggtacaaca 180
|||| ||||| || ||||| ||||| |||||||||||||||||||||||||||||||| |
Sbjct: 472 gttatacatatcttttcatatactcgtccatgcgggtatactgaacctctgggtacaata 413
Query: 181 gagtagcgtctgctccatcgtcgccgatttcaaaatttgtcaagcaaccttcatagaaaa 240
||||| | ||||||||||| || || ||||||||||||||||||||||||||||||||||
Sbjct: 412 gagtaccctctgctccatcatcaccaatttcaaaatttgtcaagcaaccttcatagaaaa 353
Query: 241 tgtggtaatagtgtcccactccggcttgattggccaagtcagtacctttcattgaagcca 300
|||||||||||||||||||||| |||||||||| ||||||||| |||||||||||||||
Sbjct: 352 tgtggtaatagtgtcccactccaacttgattggcgaagtcagtatctttcattgaagcca 293
Query: 301 agaattcatctgcaggaatgtggattttctccagaacgtttccggaaagcttttcccact 360
|||||||||| |||||||||||||||||||||||||| ||||| ||||| ||||||||
Sbjct: 292 agaattcatccgcaggaatgtggattttctccagaacatttccagaaaggttttcccatg 233
Query: 361 tcgagataacatcgttttgagtcaagatgttttctggtggtcttatgtatagtgtcttgt 420
| ||||||||||| ||||||||||||||||||||||||||||| | ||||| ||||||||
Sbjct: 232 ttgagataacatcattttgagtcaagatgttttctggtggtctcaggtatattgtcttgt 173
Query: 421 tcaatgcgcgaggatcatcaacagacttgattgtatacgttgcaacatcgtcttcatcac 480
|||||| ||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct: 172 tcaatgtgcgaggatcatcaacagacttcattgtatatgttgcaacatcgtcttcatcac 113
Query: 481 agaatatagctttgacattgccgtctccatatacatgaactttttctttgggcggcaaaa 540
| |||||| |||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct: 112 aaaatataactttgacattgccgtctccatatacatgaactttctctttgggtggcaaaa 53
Query: 541 gggtgcgcatctgacataggtttgggcaaaagtaagcagcaaagcaattggc 592
|||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 52 gggtacgcatttgacataggtttgggcaaaagtaagcagcaaagcaattggc 1
>gb|CD432656.1|CD432656 ETH1_25_A11.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_25_A11_A002 3', mRNA sequence
Length = 698
Score = 650 bits (328), Expect = 0.0
Identities = 436/472 (92%)
Strand = Plus / Minus
Query: 121 gttacacatacctcttcatgtactcatccatgcgggtatactgaacctctgggtacaaca 180
|||| ||||| || ||||| ||||| |||||||||||||||||||||||||||||||| |
Sbjct: 472 gttatacatatcttttcatatactcgtccatgcgggtatactgaacctctgggtacaata 413
Query: 181 gagtagcgtctgctccatcgtcgccgatttcaaaatttgtcaagcaaccttcatagaaaa 240
||||| | ||||||||||| || || |||||||| |||||||||||||||||||||||||
Sbjct: 412 gagtaccctctgctccatcatcaccaatttcaaagtttgtcaagcaaccttcatagaaaa 353
Query: 241 tgtggtaatagtgtcccactccggcttgattggccaagtcagtacctttcattgaagcca 300
|||||||||||||||||||||| |||||||||| ||||||||| |||||||||||||||
Sbjct: 352 tgtggtaatagtgtcccactccaacttgattggcgaagtcagtatctttcattgaagcca 293
Query: 301 agaattcatctgcaggaatgtggattttctccagaacgtttccggaaagcttttcccact 360
|||||||||| |||||||||||||||||||||||||| ||||| ||||| ||||||||
Sbjct: 292 agaattcatccgcaggaatgtggattttctccagaacatttccagaaaggttttcccatg 233
Query: 361 tcgagataacatcgttttgagtcaagatgttttctggtggtcttatgtatagtgtcttgt 420
| ||||||||||| ||||||||||||||||||||||||||||| | ||||| ||||||||
Sbjct: 232 ttgagataacatcattttgagtcaagatgttttctggtggtctcaggtatattgtcttgt 173
Query: 421 tcaatgcgcgaggatcatcaacagacttgattgtatacgttgcaacatcgtcttcatcac 480
|||||| ||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct: 172 tcaatgtgcgaggatcatcaacagacttcattgtatatgttgcaacatcgtcttcatcac 113
Query: 481 agaatatagctttgacattgccgtctccatatacatgaactttttctttgggcggcaaaa 540
| |||||| |||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct: 112 aaaatataactttgacattgccgtctccatatacatgaactttctctttgggtggcaaaa 53
Query: 541 gggtgcgcatctgacataggtttgggcaaaagtaagcagcaaagcaattggc 592
|||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 52 gggtacgcatttgacataggtttgggcaaaagtaagcagcaaagcaattggc 1
>gb|CN130191.1|CN130191 RHOH1_39_H05.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_39_H05_A002 5', mRNA sequence
Length = 747
Score = 620 bits (313), Expect = e-176
Identities = 426/468 (91%)
Strand = Plus / Minus
Query: 317 aatgtggattttctccagaacgtttccggaaagcttttcccacttcgagataacatcgtt 376
||||||||||||||||||||| ||||| ||||| |||||||| | ||||||||||| ||
Sbjct: 747 aatgtggattttctccagaacatttccagaaaggttttcccatgttgagataacatcatt 688
Query: 377 ttgagtcaagatgttttctggtggtcttatgtatagtgtcttgttcaatgcgcgaggatc 436
|||||||||||||||||||||||||| | ||||| |||||||||||||| |||||||||
Sbjct: 687 ntgagtcaagatgttttctggtggtctcaggtatattgtcttgttcaatgtgcgaggatc 628
Query: 437 atcaacagacttgattgtatacgttgcaacatcgtcttcatcacagaatatagctttgac 496
|||||||||||| |||||||| ||||||||||||||||||||||| |||||| |||||||
Sbjct: 627 atcaacagacttcattgtatatgttgcaacatcgtcttcatcacaaaatataactttgac 568
Query: 497 attgccgtctccatatacatgaactttttctttgggcggcaaaagggtgcgcatctgaca 556
||||||||||||||||||||||||||| |||||||| ||||||||||| ||||| |||||
Sbjct: 567 attgccgtctccatatacatgaactttctctttgggtggcaaaagggtacgcatttgaca 508
Query: 557 taggtttgggcaaaagtaagcagcaaagcaattggcagaaacataggtgtgaggaatgtt 616
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 507 taggtttgggcaaaagtaagcagcaaagcaattggcagaaacataggtgtggggaatgtt 448
Query: 617 ggcatcttctattgcacgccttaggtccatcttttcatcaaatgtaacccttcctggttc 676
||| ||||||||||| || ||||||||||||||||| |||||||||||||||||||||||
Sbjct: 447 ggcctcttctattgcccgtcttaggtccatcttttcttcaaatgtaacccttcctggttc 388
Query: 677 aagagcatgccccatcttggatggatccatgccgaattccgatggtataaaacnnnnnnt 736
|||||||||| ||||||||||||||||||||||||||| ||||||||||||| |
Sbjct: 387 aagagcatgcgtcatcttggatggatccatgccgaattctgatggtataaaacgcttgat 328
Query: 737 gttcccagcctccttgatagcctcgacgngnnnatgctgcanngagag 784
||| || ||||||||||||||||||||| | |||||||| |||||
Sbjct: 327 gttgccggcctccttgatagcctcgacgagcctatgctgcagggagag 280
>gb|CN137170.1|CN137170 OX1_55_C12.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_55_C12_A002 5', mRNA sequence
Length = 809
Score = 605 bits (305), Expect = e-171
Identities = 440/489 (89%)
Strand = Plus / Minus
Query: 296 agccaagaattcatctgcaggaatgtggattttctccagaacgtttccggaaagcttttc 355
|||||||||||||||| |||||||||||||||||| ||||| ||||| ||||| |||||
Sbjct: 809 agccaagaattcatctataggaatgtggattttctcaagaacatttccagaaaggttttc 750
Query: 356 ccacttcgagataacatcgttttgagtcaagatgttttctggtggtcttatgtatagtgt 415
||| || ||||||||||| || |||||||| ||||||||||||||||||| ||||| |||
Sbjct: 749 ccattttgagataacatcattgtgagtcaaaatgttttctggtggtcttaagtatattgt 690
Query: 416 cttgttcaatgcgcgaggatcatcaacagacttgattgtatacgttgcaacatcgtcttc 475
||||||||||||||||||||||||||||||||| | |||||| |||||||||||||||||
Sbjct: 689 cttgttcaatgcgcgaggatcatcaacagacttcactgtatatgttgcaacatcgtcttc 630
Query: 476 atcacagaatatagctttgacattgccgtctccatatacatgaactttttctttgggcgg 535
|||||| |||||| |||| ||||||||||||||||| | ||||||| |||||||| ||
Sbjct: 629 atcacaaaatataactttaacattgccgtctccataaatgagaactttctctttgggtgg 570
Query: 536 caaaagggtgcgcatctgacataggtttgggcaaaagtaagcagcaaagcaattggcaga 595
||||||||||| ||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 569 caaaagggtgcccatttgacataggtttgggcaaaagtaaccagcaaagcaattggcaga 510
Query: 596 aacataggtgtgaggaatgttggcatcttctattgcacgccttaggtccatcttttcatc 655
|||||||||||| ||||||||||| ||||| ||||| || ||||| ||||||||||||||
Sbjct: 509 aacataggtgtggggaatgttggcctcttcaattgcccgtcttagctccatcttttcatc 450
Query: 656 aaatgtaacccttcctggttcaagagcatgccccatcttggatggatccatgccgaattc 715
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 aaatgtaatccttcctggttcaagagcatgccccatcttggatggatccatgccgaattc 390
Query: 716 cgatggtataaaacnnnnnntgttcccagcctccttgatagcctcgacgngnnnatgctg 775
||||||||||||| |||||||||||||||||||||||||||| | ||||||
Sbjct: 389 tgatggtataaaacgcttgacgttcccagcctccttgatagcctcgacgagctgatgctg 330
Query: 776 canngagag 784
|| |||||
Sbjct: 329 caaggagag 321
>gb|BM330867.1|BM330867 PIC1_57_E11.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 573
Score = 575 bits (290), Expect = e-162
Identities = 395/430 (91%)
Strand = Plus / Minus
Query: 121 gttacacatacctcttcatgtactcatccatgcgggtatactgaacctctgggtacaaca 180
|||| ||||| || ||||| ||||| |||||||||||||||||||||||||||||||| |
Sbjct: 430 gttatacatatcttttcatatactcgtccatgcgggtatactgaacctctgggtacaata 371
Query: 181 gagtagcgtctgctccatcgtcgccgatttcaaaatttgtcaagcaaccttcatagaaaa 240
||||| | ||||||||||| || || |||||||| |||||||||||||||||||||||||
Sbjct: 370 gagtaccctctgctccatcatcaccaatttcaaagtttgtcaagcaaccttcatagaaaa 311
Query: 241 tgtggtaatagtgtcccactccggcttgattggccaagtcagtacctttcattgaagcca 300
|||||||||||||||||||||| |||||||||| ||||||||| |||||||||||||||
Sbjct: 310 tgtggtaatagtgtcccactccaacttgattggcgaagtcagtatctttcattgaagcca 251
Query: 301 agaattcatctgcaggaatgtggattttctccagaacgtttccggaaagcttttcccact 360
|||||||||| |||||||||||||||||||||||||| ||||| ||||| ||||||||
Sbjct: 250 agaattcatccgcaggaatgtggattttctccagaacatttccagaaaggttttcccatg 191
Query: 361 tcgagataacatcgttttgagtcaagatgttttctggtggtcttatgtatagtgtcttgt 420
| ||||||||||| ||||||||||||||||||||||||||||| | ||||| ||||||||
Sbjct: 190 ttgagataacatcattttgagtcaagatgttttctggtggtctcaggtatattgtcttgt 131
Query: 421 tcaatgcgcgaggatcatcaacagacttgattgtatacgttgcaacatcgtcttcatcac 480
|||||| ||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct: 130 tcaatgtgcgaggatcatcaacagacttcattgtatatgttgcaacatcgtcttcatcac 71
Query: 481 agaatatagctttgacattgccgtctccatatacatgaactttttctttgggcggcaaaa 540
| |||||| |||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct: 70 aaaatataactttgacattgccgtctccatatacatgaactttctctttgggtggcaaaa 11
Query: 541 gggtgcgcat 550
|||| |||||
Sbjct: 10 gggtacgcat 1
>gb|BE364608.2|BE364608 PI1_15_A07.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 552
Score = 539 bits (272), Expect = e-151
Identities = 377/412 (91%)
Strand = Plus / Minus
Query: 121 gttacacatacctcttcatgtactcatccatgcgggtatactgaacctctgggtacaaca 180
|||| ||||| || ||||| ||||| |||||||||||||||||||||||||||||||| |
Sbjct: 415 gttatacatatcttttcatatactcgtccatgcgggtatactgaacctctgggtacaata 356
Query: 181 gagtagcgtctgctccatcgtcgccgatttcaaaatttgtcaagcaaccttcatagaaaa 240
|||| | ||||||||||| || || |||||||| |||||||||||||||||||| ||||
Sbjct: 355 aagtaccctctgctccatcatcaccaatttcaaagtttgtcaagcaaccttcataaaaaa 296
Query: 241 tgtggtaatagtgtcccactccggcttgattggccaagtcagtacctttcattgaagcca 300
|||||||||||||||||||||| |||||||||| ||||||||| |||||||||||||||
Sbjct: 295 tgtggtaatagtgtcccactccaacttgattggcgaagtcagtatctttcattgaagcca 236
Query: 301 agaattcatctgcaggaatgtggattttctccagaacgtttccggaaagcttttcccact 360
|||||||||| |||||||||||||||||||||||||| ||||| ||||| ||||||||
Sbjct: 235 agaattcatccgcaggaatgtggattttctccagaacatttccagaaaggttttcccatg 176
Query: 361 tcgagataacatcgttttgagtcaagatgttttctggtggtcttatgtatagtgtcttgt 420
| ||||||||||| ||||||||||||||||||||||||||||| | ||||| ||||||||
Sbjct: 175 ttgagataacatcattttgagtcaagatgttttctggtggtctcaggtatattgtcttgt 116
Query: 421 tcaatgcgcgaggatcatcaacagacttgattgtatacgttgcaacatcgtcttcatcac 480
|||||| ||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct: 115 tcaatgtgcgaggatcatcaacagacttcattgtatatgttgcaacatcgtcttcatcac 56
Query: 481 agaatatagctttgacattgccgtctccatatacatgaactttttctttggg 532
| |||||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 55 aaaatataactttgacattgccgtctccatatacatgaactttctctttggg 4
>gb|BE596684.1|BE596684 PI1_58_C12.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 634
Score = 513 bits (259), Expect = e-144
Identities = 340/371 (91%)
Strand = Plus / Minus
Query: 414 gtcttgttcaatgcgcgaggatcatcaacagacttgattgtatacgttgcaacatcgtct 473
||||||||||||| ||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct: 634 gtcttgttcaatgtgcgaggatcatcaacagacttcattgtatatgttgcaacatcgtct 575
Query: 474 tcatcacagaatatagctttgacattgccgtctccatatacatgaactttttctttgggc 533
|||||||| |||||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 574 tcatcacaaaatataactttgacattgccgtctccatatacatgaactttctctttgggt 515
Query: 534 ggcaaaagggtgcgcatctgacataggtttgggcaaaagtaagcagcaaagcaattggca 593
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 ggcaaaagggtacgcatttgacataggtttgggcaaaagtaagcagcaaagcaattggca 455
Query: 594 gaaacataggtgtgaggaatgttggcatcttctattgcacgccttaggtccatcttttca 653
|||||||||||||| ||||||||||| ||||||||||| || |||||||||||||||||
Sbjct: 454 gaaacataggtgtggggaatgttggcctcttctattgcccgtcttaggtccatcttttct 395
Query: 654 tcaaatgtaacccttcctggttcaagagcatgccccatcttggatggatccatgccgaat 713
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 394 tcaaatgtaacccttcctggttcaagagcatgcgtcatcttggatggatccatgccgaat 335
Query: 714 tccgatggtataaaacnnnnnntgttcccagcctccttgatagcctcgacgngnnnatgc 773
|| ||||||||||||| |||| || ||||||||||||||||||||| | ||||
Sbjct: 334 tctgatggtataaaacgcttgatgttgccggcctccttgatagcctcgacgagcctatgc 275
Query: 774 tgcanngagag 784
|||| |||||
Sbjct: 274 tgcagggagag 264
>gb|BE596683.1|BE596683 PI1_58_C11.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 625
Score = 496 bits (250), Expect = e-138
Identities = 331/362 (91%)
Strand = Plus / Minus
Query: 423 aatgcgcgaggatcatcaacagacttgattgtatacgttgcaacatcgtcttcatcacag 482
|||| ||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct: 625 aatgtgcgaggatcatcaacagacttcattgtatatgttgcaacatcgtcttcatcacaa 566
Query: 483 aatatagctttgacattgccgtctccatatacatgaactttttctttgggcggcaaaagg 542
|||||| |||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct: 565 aatataactttgacattgccgtctccatatacatgaactttctctttgggtggcaaaagg 506
Query: 543 gtgcgcatctgacataggtttgggcaaaagtaagcagcaaagcaattggcagaaacatag 602
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gtacgcatttgacataggtttgggcaaaagtaagcagcaaagcaattggcagaaacatag 446
Query: 603 gtgtgaggaatgttggcatcttctattgcacgccttaggtccatcttttcatcaaatgta 662
||||| ||||||||||| ||||||||||| || ||||||||||||||||| |||||||||
Sbjct: 445 gtgtggggaatgttggcctcttctattgcccgtcttaggtccatcttttcttcaaatgta 386
Query: 663 acccttcctggttcaagagcatgccccatcttggatggatccatgccgaattccgatggt 722
|||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct: 385 acccttcctggttcaagagcatgcgtcatcttggatggatccatgccgaattctgatggt 326
Query: 723 ataaaacnnnnnntgttcccagcctccttgatagcctcgacgngnnnatgctgcanngag 782
||||||| |||| || ||||||||||||||||||||| | |||||||| |||
Sbjct: 325 ataaaacgcttgatgttgccggcctccttgatagcctcgacgagcctatgctgcagggag 266
Query: 783 ag 784
||
Sbjct: 265 ag 264
>gb|CD432670.1|CD432670 ETH1_25_A11.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_25_A11_A002 5', mRNA sequence
Length = 722
Score = 482 bits (243), Expect = e-134
Identities = 323/354 (91%)
Strand = Plus / Minus
Query: 431 aggatcatcaacagacttgattgtatacgttgcaacatcgtcttcatcacagaatatagc 490
|||||||||||||||||| || ||||| ||||||||||||||||||||||| |||||| |
Sbjct: 722 aggatcatcaacagacttcatngtatatgttgcaacatcgtcttcatcacaaaatataac 663
Query: 491 tttgacattgccgtctccatatacatgaactttttctttgggcggcaaaagggtgcgcat 550
||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||
Sbjct: 662 tttgacattgccgtctccatatacatgaactttctctttgggtggcaaaagggtacgcat 603
Query: 551 ctgacataggtttgggcaaaagtaagcagcaaagcaattggcagaaacataggtgtgagg 610
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 602 ttgacataggtttgggcaaaagtaagcagcaaagcaattggcagaaacataggtgtgggg 543
Query: 611 aatgttggcatcttctattgcacgccttaggtccatcttttcatcaaatgtaacccttcc 670
||||||||| ||||||||||| || ||||||||||||||||| |||||||||||||||||
Sbjct: 542 aatgttggcctcttctattgcccgtcttaggtccatcttttcttcaaatgtaacccttcc 483
Query: 671 tggttcaagagcatgccccatcttggatggatccatgccgaattccgatggtataaaacn 730
|||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct: 482 tggttcaagagcatgcgtcatcttggatggatccatgccgaattctgatggtataaaacg 423
Query: 731 nnnnntgttcccagcctccttgatagcctcgacgngnnnatgctgcanngagag 784
|||| || ||||||||||||||||||||| | |||||||| |||||
Sbjct: 422 cttgatgttgccggcctccttgatagcctcgacgagcctatgctgcagggagag 369
>gb|BE356802.1|BE356802 DG1_12_E08.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 306
Score = 438 bits (221), Expect = e-121
Identities = 284/305 (93%)
Strand = Plus / Minus
Query: 312 gcaggaatgtggattttctccagaacgtttccggaaagcttttcccacttcgagataaca 371
|||||||||||||||||||||||||| ||||| ||||| |||||||| | |||||||||
Sbjct: 305 gcaggaatgtggattttctccagaacatttccagaaaggttttcccatgttgagataaca 246
Query: 372 tcgttttgagtcaagatgttttctggtggtcttatgtatagtgtcttgttcaatgcgcga 431
|| ||||||||||||||||||||||||||||| | ||||| |||||||||||||| ||||
Sbjct: 245 tcattttgagtcaagatgttttctggtggtctcaggtatattgtcttgttcaatgtgcga 186
Query: 432 ggatcatcaacagacttgattgtatacgttgcaacatcgtcttcatcacagaatatagct 491
||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||| ||
Sbjct: 185 ggatcatcaacagacttcattgtatatgttgcaacatcgtcttcatcacaaaatataact 126
Query: 492 ttgacattgccgtctccatatacatgaactttttctttgggcggcaaaagggtgcgcatc 551
|||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||
Sbjct: 125 ttgacattgccgtctccatatacatgaactttctctttgggtggcaaaagggtacgcatt 66
Query: 552 tgacataggtttgggcaaaagtaagcagcaaagcaattggcagaaacataggtgtgagga 611
||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 65 tgacataagtttgggcaaaagtaagcagcaaagcaattggcagaaacataggtgtgggga 6
Query: 612 atgtt 616
|||||
Sbjct: 5 atgtt 1
>gb|CD425348.1|CD425348 SA1_11_G07.g1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_11_G07_A002 5', mRNA sequence
Length = 755
Score = 381 bits (192), Expect = e-104
Identities = 228/240 (95%)
Strand = Plus / Minus
Query: 490 ctttgacattgccgtctccatatacatgaactttttctttgggcggcaaaagggtgcgca 549
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||
Sbjct: 690 ctttgacattgccgtctccatatacatgaactttctctttgggtggcaaaagggtacgca 631
Query: 550 tctgacataggtttgggcaaaagtaagcagcaaagcaattggcagaaacataggtgtgag 609
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 630 tttgacataggtttgggcaaaagtaagcagcaaagcaattggcagaaacataggtgtggg 571
Query: 610 gaatgttggcatcttctattgcacgccttaggtccatcttttcatcaaatgtaacccttc 669
|||||||||| ||||||||||| || ||||||||||||||||| ||||||||||||||||
Sbjct: 570 gaatgttggcctcttctattgcccgtcttaggtccatcttttcttcaaatgtaacccttc 511
Query: 670 ctggttcaagagcatgccccatcttggatggatccatgccgaattccgatggtataaaac 729
||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct: 510 ctggttcaagagcatgcgtcatcttggatggatccatgccgaattctgatggtataaaac 451
Score = 46.1 bits (23), Expect = 0.005
Identities = 35/41 (85%)
Strand = Plus / Minus
Query: 744 gcctccttgatagcctcgacgngnnnatgctgcanngagag 784
||||||||||||||||||||| | |||||||| |||||
Sbjct: 315 gcctccttgatagcctcgacgagcctatgctgcagggagag 275
>gb|CX608544.1|CX608544 ANR1_39_E12.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_39_E12_A002 3', mRNA sequence
Length = 665
Score = 355 bits (179), Expect = 4e-096
Identities = 263/295 (89%)
Strand = Plus / Minus
Query: 490 ctttgacattgccgtctccatatacatgaactttttctttgggcggcaaaagggtgcgca 549
|||| ||||||||||||||||| | ||||||| |||||||| ||||||||||||| ||
Sbjct: 355 ctttaacattgccgtctccataaatgagaactttctctttgggtggcaaaagggtgccca 296
Query: 550 tctgacataggtttgggcaaaagtaagcagcaaagcaattggcagaaacataggtgtgag 609
| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct: 295 tttgacataggtttgggcaaaagtaaccagcaaagcaattggcagaaacataggtgtggg 236
Query: 610 gaatgttggcatcttctattgcacgccttaggtccatcttttcatcaaatgtaacccttc 669
|||||||||| ||||| ||||| || ||||| |||||||| ||||||||||||| |||||
Sbjct: 235 gaatgttggcctcttcaattgcccgtcttagctccatcttctcatcaaatgtaatccttc 176
Query: 670 ctggttcaagagcatgccccatcttggatggatccatgccgaattccgatggtataaaac 729
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 175 ctggttcaagagcatgccccatcttggatggatccatgccgaattctgatggtataaaac 116
Query: 730 nnnnnntgttcccagcctccttgatagcctcgacgngnnnatgctgcanngagag 784
|||||||||||||||||||||||||||| | |||||||| |||||
Sbjct: 115 gcttgacgttcccagcctccttgatagcctcgacgagctgatgctgcaaggagag 61
Score = 180 bits (91), Expect = 1e-043
Identities = 139/155 (89%)
Strand = Plus / Minus
Query: 135 ttcatgtactcatccatgcgggtatactgaacctctgggtacaacagagtagcgtctgct 194
|||||||||||| ||||||| |||||||||||||| |||||||| |||||||| ||||||
Sbjct: 506 ttcatgtactcacccatgcgagtatactgaacctccgggtacaatagagtagcctctgct 447
Query: 195 ccatcgtcgccgatttcaaaatttgtcaagcaaccttcatagaaaatgtggtaatagtgt 254
|| || ||||| ||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct: 446 ccgtcatcgccaatttcaaaatttgtcaagcaaccttcatagaaaatatggtaaaagtgt 387
Query: 255 cccactccggcttgattggccaagtcagtaccttt 289
||||| || |||||||||| |||| |||| ||||
Sbjct: 386 cccacaacgacttgattggcgaagttagtatcttt 352
>gb|BE362389.1|BE362389 DG1_86_G06.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 571
Score = 341 bits (172), Expect = 6e-092
Identities = 235/260 (90%)
Strand = Plus / Minus
Query: 525 tctttgggcggcaaaagggtgcgcatctgacataggtttgggcaaaagtaagcagcaaag 584
|||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct: 568 tctttgggtggcaaaagggtacgcatttgacataggtttgggcaaaagtaagcagcaaag 509
Query: 585 caattggcagaaacataggtgtgaggaatgttggcatcttctattgcacgccttaggtcc 644
||||||||||||||||||||||| ||||||||||| ||||||||||| || |||||||||
Sbjct: 508 caattggcagaaacataggtgtggggaatgttggcctcttctattgcccgtcttaggtcc 449
Query: 645 atcttttcatcaaatgtaacccttcctggttcaagagcatgccccatcttggatggatcc 704
|||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 448 atcttttcttcaaatgtaacccttcctggttcaagagcatgcgtcatcttggatggatcc 389
Query: 705 atgccgaattccgatggtataaaacnnnnnntgttcccagcctccttgatagcctcgacg 764
||||||||||| ||||||||||||| |||| || |||||||||||||||||||||
Sbjct: 388 atgccgaattctgatggtataaaacgcttgatgttgccggcctccttgatagcctcgacg 329
Query: 765 ngnnnatgctgcanngagag 784
| |||||||| |||||
Sbjct: 328 agcctatgctgcagggagag 309
>gb|CF431842.1|CF431842 NIT1_11_D11.b1_A002 Nitrogen-deficient seedlings Sorghum bicolor
cDNA clone NIT1_11_D11_A002 3', mRNA sequence
Length = 460
Score = 337 bits (170), Expect = 1e-090
Identities = 242/266 (90%)
Strand = Plus / Minus
Query: 121 gttacacatacctcttcatgtactcatccatgcgggtatactgaacctctgggtacaaca 180
|||| ||||| || ||||| ||||| |||||||||||||||||||||||||||||||| |
Sbjct: 266 gttatacatatcttttcatatactcgtccatgcgggtatactgaacctctgggtacaata 207
Query: 181 gagtagcgtctgctccatcgtcgccgatttcaaaatttgtcaagcaaccttcatagaaaa 240
||||| | ||||||||||| || || |||||||| |||||||||||||||||||||||||
Sbjct: 206 gagtaccctctgctccatcatcaccaatttcaaagtttgtcaagcaaccttcatagaaaa 147
Query: 241 tgtggtaatagtgtcccactccggcttgattggccaagtcagtacctttcattgaagcca 300
|||||||||||||||||||||| |||||||||| ||||||||| |||||||||||||||
Sbjct: 146 tgtggtaatagtgtcccactccaacttgattggcgaagtcagtatctttcattgaagcca 87
Query: 301 agaattcatctgcaggaatgtggattttctccagaacgtttccggaaagcttttcccact 360
|||||||||| |||||||||||||||||||||||||| ||||| ||||| ||||||||
Sbjct: 86 agaattcatccgcaggaatgtggattttctccagaacatttccagaaaggttttcccatg 27
Query: 361 tcgagataacatcgttttgagtcaag 386
| ||||||||||| ||||||||||||
Sbjct: 26 ttgagataacatcattttgagtcaag 1
>gb|BE356707.1|BE356707 DG1_12_E08.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 562
Score = 331 bits (167), Expect = 6e-089
Identities = 227/251 (90%)
Strand = Plus / Minus
Query: 534 ggcaaaagggtgcgcatctgacataggtttgggcaaaagtaagcagcaaagcaattggca 593
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 ggcaaaagggtacgcatttgacataggtttgggcaaaagtaagcagcaaagcaattggca 500
Query: 594 gaaacataggtgtgaggaatgttggcatcttctattgcacgccttaggtccatcttttca 653
|||||||||||||| ||||||||||| ||||||||||| || |||||||||||||||||
Sbjct: 499 gaaacataggtgtggggaatgttggcctcttctattgcccgtcttaggtccatcttttct 440
Query: 654 tcaaatgtaacccttcctggttcaagagcatgccccatcttggatggatccatgccgaat 713
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 439 tcaaatgtaacccttcctggttcaagagcatgcgtcatcttggatggatccatgccgaat 380
Query: 714 tccgatggtataaaacnnnnnntgttcccagcctccttgatagcctcgacgngnnnatgc 773
|| ||||||||||||| |||| || ||||||||||||||||||||| | ||||
Sbjct: 379 tctgatggtataaaacgcttgatgttgccggcctccttgatagcctcgacgagcctatgc 320
Query: 774 tgcanngagag 784
|||| |||||
Sbjct: 319 tgcagggagag 309
>gb|BE594253.1|BE594253 WS1_104_B07.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 518
Score = 331 bits (167), Expect = 6e-089
Identities = 227/251 (90%)
Strand = Plus / Minus
Query: 534 ggcaaaagggtgcgcatctgacataggtttgggcaaaagtaagcagcaaagcaattggca 593
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 ggcaaaagggtacgcatttgacataggtttgggcaaaagtaagcagcaaagcaattggca 458
Query: 594 gaaacataggtgtgaggaatgttggcatcttctattgcacgccttaggtccatcttttca 653
|||||||||||||| ||||||||||| ||||||||||| || |||||||||||||||||
Sbjct: 457 gaaacataggtgtggggaatgttggcctcttctattgcccgtcttaggtccatcttttct 398
Query: 654 tcaaatgtaacccttcctggttcaagagcatgccccatcttggatggatccatgccgaat 713
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 397 tcaaatgtaacccttcctggttcaagagcatgcgtcatcttggatggatccatgccgaat 338
Query: 714 tccgatggtataaaacnnnnnntgttcccagcctccttgatagcctcgacgngnnnatgc 773
|| ||||||||||||| |||| || ||||||||||||||||||||| | ||||
Sbjct: 337 tctgatggtataaaacgcttgatgttgccggcctccttgatagcctcgacgagcctatgc 278
Query: 774 tgcanngagag 784
|||| |||||
Sbjct: 277 tgcagggagag 267
>gb|BM318563.1|BM318563 PI1_15_A07.b9_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 524
Score = 281 bits (142), Expect = 5e-074
Identities = 196/218 (89%)
Strand = Plus / Minus
Query: 567 caaaagtaagcagcaaagcaattggcagaaacataggtgtgaggaatgttggcatcttct 626
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct: 524 caaaagtaagcagcaaagcaattggcagaaacataggtgtggggaatgttggcctcttct 465
Query: 627 attgcacgccttaggtccatcttttcatcaaatgtaacccttcctggttcaagagcatgc 686
||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 464 attgcccgtcttaggtccatcttttcttcaaatgtaacccttcctggttcaagagcatgc 405
Query: 687 cccatcttggatggatccatgccgaattccgatggtataaaacnnnnnntgttcccagcc 746
||||||||||||||||||||||||||| ||||||||||||| |||| || |||
Sbjct: 404 gtcatcttggatggatccatgccgaattctgatggtataaaacgcttgatgttgccggcc 345
Query: 747 tccttgatagcctcgacgngnnnatgctgcanngagag 784
|||||||||||||||||| | |||||||| |||||
Sbjct: 344 tccttgatagcctcgacgagcctatgctgcagggagag 307
>gb|CD429828.1|CD429828 ETH1_15_D02.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_15_D02_A002 5', mRNA sequence
Length = 575
Score = 268 bits (135), Expect = 7e-070
Identities = 189/211 (89%)
Strand = Plus / Minus
Query: 574 aagcagcaaagcaattggcagaaacataggtgtgaggaatgttggcatcttctattgcac 633
|||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |
Sbjct: 575 aagcagcaaagcaattggcagaaacataggtgtggggaatgttggcctcttctattgccc 516
Query: 634 gccttaggtccatcttttcatcaaatgtaacccttcctggttcaagagcatgccccatct 693
| ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct: 515 gtcttaggtccatcttttcttcaaatgtaacccttcctggttcaagagcatgcgtcatct 456
Query: 694 tggatggatccatgccgaattccgatggtataaaacnnnnnntgttcccagcctccttga 753
|||||||||||||||||||||| ||||||||||||| |||| || ||||||||||
Sbjct: 455 tggatggatccatgccgaattctgatggtataaaacgcttgatgttgccggcctccttga 396
Query: 754 tagcctcgacgngnnnatgctgcanngagag 784
||||||||||| | |||||||| |||||
Sbjct: 395 tagcctcgacgagcctatgctgcagggagag 365
>gb|CW227372.1|CW227372 104_665_11205380_148_37225_068 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11205380, DNA
sequence
Length = 727
Score = 266 bits (134), Expect = 3e-069
Identities = 215/240 (89%), Gaps = 4/240 (1%)
Strand = Plus / Plus
Query: 490 ctttgacattgccgtctccatatacatgaactttttctttgggcggcaaaagggtgcgca 549
||||||||||| | |||||||||||| ||||||| |||||||| |||||| |||||||
Sbjct: 226 ctttgacattgtcatctccatatacaagaactttctctttgggtggcaaa---gtgcgca 282
Query: 550 tctgacataggtttgggcaaaagtaagcagcaaagcaattggcagaaacataggtgtgag 609
| ||||||||||| || |||||| || |||||||||||||||||| |||| ||||||| |
Sbjct: 283 tttgacataggttaggccaaaaggaaccagcaaagcaattggcaggaacagaggtgtggg 342
Query: 610 gaatgttggcatcttctattgcacgccttaggtccatcttttcatcaaatgtaacccttc 669
||||||| |||||||||||||| || ||||| ||||||| |||||||||||||||||||
Sbjct: 343 gaatgttcgcatcttctattgctcgtattaggaccatcttctcatcaaatgtaacccttc 402
Query: 670 ctggttcaagagcatg-ccccatcttggatggatccatgccgaattccgatggtataaaa 728
|||||||||||||||| |||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 403 ctggttcaagagcatgcccccatcttggatggatctatgccgaattctgatggtataaaa 462
>gb|CD425220.1|CD425220 SA1_11_G07.b1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_11_G07_A002 3', mRNA sequence
Length = 679
Score = 206 bits (104), Expect = 2e-051
Identities = 149/164 (90%)
Strand = Plus / Minus
Query: 121 gttacacatacctcttcatgtactcatccatgcgggtatactgaacctctgggtacaaca 180
|||| ||||| || ||||| ||||| |||||||||||||||||||||||||||||||| |
Sbjct: 550 gttatacatatcttttcatatactcgtccatgcgggtatactgaacctctgggtacaata 491
Query: 181 gagtagcgtctgctccatcgtcgccgatttcaaaatttgtcaagcaaccttcatagaaaa 240
||||| | ||||||||||| || || |||||||| |||||||||||||||||||||||||
Sbjct: 490 gagtaccctctgctccatcatcaccaatttcaaagtttgtcaagcaaccttcatagaaaa 431
Query: 241 tgtggtaatagtgtcccactccggcttgattggccaagtcagta 284
|||||||||||||||||||||| |||||||||| |||||||||
Sbjct: 430 tgtggtaatagtgtcccactccaacttgattggcgaagtcagta 387
Score = 60.0 bits (30), Expect = 3e-007
Identities = 30/30 (100%)
Strand = Plus / Minus
Query: 281 agtacctttcattgaagccaagaattcatc 310
||||||||||||||||||||||||||||||
Sbjct: 33 agtacctttcattgaagccaagaattcatc 4
>gb|CW259601.1|CW259601 104_726_11228515_148_35186_080 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11228515, DNA
sequence
Length = 642
Score = 200 bits (101), Expect = 1e-049
Identities = 134/145 (92%)
Strand = Plus / Plus
Query: 136 tcatgtactcatccatgcgggtatactgaacctctgggtacaacagagtagcgtctgctc 195
|||||||||| ||||||| |||||||||||||||||||||||| |||||||| ||||| |
Sbjct: 470 tcatgtactcgtccatgcaggtatactgaacctctgggtacaatagagtagcctctgccc 529
Query: 196 catcgtcgccgatttcaaaatttgtcaagcaaccttcatagaaaatgtggtaatagtgtc 255
|||| || |||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 530 catcatcaccgatttcaaaatttgtcaagcaaccttcatagaaattgtggtaatagtgtc 589
Query: 256 ccactccggcttgattggccaagtc 280
||||||| |||||||||| |||||
Sbjct: 590 ccactccaacttgattggcgaagtc 614
>gb|BM326480.1|BM326480 PIC1_57_E11.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 524
Score = 180 bits (91), Expect = 1e-043
Identities = 139/159 (87%)
Strand = Plus / Minus
Query: 626 tattgcacgccttaggtccatcttttcatcaaatgtaacccttcctggttcaagagcatg 685
|||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 524 tattgcccgtcttaggtccatcttttcttcaaatgtaacccttcctggttcaagagcatg 465
Query: 686 ccccatcttggatggatccatgccgaattccgatggtataaaacnnnnnntgttcccagc 745
| ||||||||||||||||||||||||||| ||||||||||||| |||| || ||
Sbjct: 464 cgtcatcttggatggatccatgccgaattctgatggtataaaacgcttgatgttgccggc 405
Query: 746 ctccttgatagcctcgacgngnnnatgctgcanngagag 784
||||||||||||||||||| | |||||||| |||||
Sbjct: 404 ctccttgatagcctcgacgagcctatgctgcagggagag 366
>gb|CW259600.1|CW259600 104_726_11228515_116_35190_080 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11228515, DNA
sequence
Length = 671
Score = 119 bits (60), Expect = 4e-025
Identities = 99/112 (88%)
Strand = Plus / Minus
Query: 283 tacctttcattgaagccaagaattcatctgcaggaatgtggattttctccagaacgtttc 342
||||||||| ||||||||||||||||||| ||| ||||||||||||||| | ||| ||||
Sbjct: 270 tacctttcactgaagccaagaattcatctacagaaatgtggattttctctaaaacatttc 211
Query: 343 cggaaagcttttcccacttcgagataacatcgttttgagtcaagatgttttc 394
||||||| |||| ||| || |||||||||||||||| ||||| ||| |||||
Sbjct: 210 cggaaaggtttttccattttgagataacatcgttttcagtcaggatattttc 159
Score = 117 bits (59), Expect = 2e-024
Identities = 68/71 (95%)
Strand = Plus / Minus
Query: 418 tgttcaatgcgcgaggatcatcaacagacttgattgtatacgttgcaacatcgtcttcat 477
||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct: 149 tgttcaatgcgcgaggatcataaacagacttgattgtatatgttgcaacatcgtcttcat 90
Query: 478 cacagaatata 488
|||| ||||||
Sbjct: 89 cacaaaatata 79
Score = 63.9 bits (32), Expect = 2e-008
Identities = 55/60 (91%), Gaps = 2/60 (3%)
Strand = Plus / Minus
Query: 222 aagcaaccttcatagaaaatgtgg-taatagtgtcccactccggcttgattggccaagtc 280
|||||||||||||||||| ||||| ||||||||||||||||| |||||||||| |||||
Sbjct: 667 aagcaaccttcatagaaa-tgtgggtaatagtgtcccactccaacttgattggcgaagtc 609
>gb|CW450184.1|CW450184 fsbb001f188l06f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f188l06, DNA
sequence
Length = 773
Score = 46.1 bits (23), Expect = 0.005
Identities = 35/41 (85%)
Strand = Plus / Plus
Query: 744 gcctccttgatagcctcgacgngnnnatgctgcanngagag 784
||||||||||||||||||||| | |||||||| |||||
Sbjct: 34 gcctccttgatagcctcgacgagcctatgctgcagggagag 74
>gb|CN150991.1|CN150991 WOUND1_72_F06.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_72_F06_A002 5', mRNA sequence
Length = 368
Score = 40.1 bits (20), Expect = 0.31
Identities = 44/54 (81%)
Strand = Plus / Minus
Query: 711 aattccgatggtataaaacnnnnnntgttcccagcctccttgatagcctcgacg 764
||||| ||||||||||||| |||| || |||||||||||||||| ||||
Sbjct: 368 aattctgatggtataaaacgcttgatgttgccggcctccttgatagcctagacg 315
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 182,846
Number of Sequences: 832831
Number of extensions: 182846
Number of successful extensions: 48301
Number of sequences better than 0.5: 36
Number of HSP's better than 0.5 without gapping: 35
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 48221
Number of HSP's gapped (non-prelim): 62
length of query: 814
length of database: 491,359,669
effective HSP length: 20
effective length of query: 794
effective length of database: 474,703,049
effective search space: 376914220906
effective search space used: 376914220906
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)