BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3802485.2.1
(1118 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BM322978.1|BM322978 PIC1_15_H10.b1_A002 Pathogen-infecte... 944 0.0
gb|BM324971.1|BM324971 PIC1_38_B08.b1_A002 Pathogen-infecte... 922 0.0
gb|CN124566.1|CN124566 RHOH1_5_D02.g1_A002 Acid- and alkali... 854 0.0
gb|CN124489.1|CN124489 RHOH1_5_D02.b1_A002 Acid- and alkali... 500 e-139
gb|CW171765.1|CW171765 104_582_11155916_116_36532_070 Sorgh... 303 2e-080
gb|CW171766.1|CW171766 104_582_11155916_148_36531_070 Sorgh... 250 2e-064
gb|CW271582.1|CW271582 104_743_11403073_148_35342_001 Sorgh... 250 2e-064
>gb|BM322978.1|BM322978 PIC1_15_H10.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 576
Score = 944 bits (476), Expect = 0.0
Identities = 542/564 (96%)
Strand = Plus / Plus
Query: 343 ctttgttgttcttgccatgactttaagaagaaagcctgatgtactggtaaatgttatgcc 402
||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct: 9 ctttgttgttcttgccatggctttaagaagaaagcctgatgttctggtaaatgttatgcc 68
Query: 403 aaagataatgggaaacaataaatatctgggacaggaaaagcttcccatcattgtctgggt 462
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct: 69 aaagataatgggaaacaataaatatcttggacaggaaaagctgcccatcattgtctgggt 128
Query: 463 tattgctcaggcctctcaaggtgacctagtgtctggcatgttttgctgggctcattctct 522
|||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 129 tattgctcaggcatctcaaggtgacctagtgactggcatgttttgctgggctcattctct 188
Query: 523 atttcccacattatgtgcgaagtcaagtgggaatccccttgcaagagatttggttttgca 582
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 atttcccacattatgtgcaaagtcaagtgggaatccccttgcaagagatttggttttgca 248
Query: 583 gttgcttgaaagaattttgtctgtcaccaaagctcgttctatattattgaatggtgctgt 642
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 249 gttgcttgaaagaattttgtctgtcaccaaagctcgttctatcttattgaatggtgctgt 308
Query: 643 tagaaagggagaacgcttagttccccctgtttcatttgacttgttcatgagagccacatt 702
||||| ||| |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 tagaaggggggaacgcctagttccccctgtttcatttgacttgttcatgagagccacatt 368
Query: 703 tcctgtttctaatgctcgagtgaaggctacagaaaggtttgaagcagcctacccaatgat 762
|||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||
Sbjct: 369 tcctgtttctaatgctcgggtgaaggctacggaaaggtttgaagcagcctacccaacaat 428
Query: 763 caaggagttggctcttgccggtcctcctggctcaaaaactgtgaaacaagcatcacaaca 822
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct: 429 caaggagttggctcttgctggtcctcctggctctaaaactgtgaaacaagcatcacaaca 488
Query: 823 gcttttacctttgtgtgcaaaagcaatgcaagaaaacaacgcagagctcaccagggaggc 882
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 489 gctgttacctttgtgtgcaaaagcaatgcaagaaaacaatgcagagctcaccagggaggc 548
Query: 883 tgttgatgttttcatttggtgctt 906
| |||||| ||||||||||||||
Sbjct: 549 tactgatgtattcatttggtgctt 572
>gb|BM324971.1|BM324971 PIC1_38_B08.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 561
Score = 922 bits (465), Expect = 0.0
Identities = 528/549 (96%)
Strand = Plus / Plus
Query: 12 catcatacgagaatcaacaggacattcaactcatgaggtttgctgattactttggccggg 71
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13 catcgtacgagaatcaacaggacattcaactcatgaggtttgctgattactttggccggg 72
Query: 72 catttgtagctgtaagcgcatcccaatttgcatgggcaaagatgttcaaggaatcaacag 131
|||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 73 catttgtagctgtaagtgcatcccaattcccatgggcaaagatgttcaaggaatcaacag 132
Query: 132 tgtctaagatggttgacatcccactgtgccatattcctgaggctgtcatcaagactgcga 191
|||| |||||||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct: 133 tgtccaagatggttgacattccattgtgccatattcctgaggctgtcatcaagactgcga 192
Query: 192 gtgattggatcagtcaaagatcttctgatgccctgggagactttgttttgtggtgtatag 251
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 gtgattggatcagtcaaagatcttctgatgccctgggagactttgttttgtggtgtatag 252
Query: 252 atagcatcatgtctgaattgtcaggtccatcagctggccctaagggttcaaagaaggttg 311
| ||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||
Sbjct: 253 acagcatcatgtctgaattgtcaggcccatcagcaggacctaagggttcaaagaaggttg 312
Query: 312 cacaacagtctccaagggcccaggttgcaatctttgttgttcttgccatgactttaagaa 371
| ||||| ||||||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct: 313 ctcaacaatctccaagggctcaggttgcaatctttgttgttcttgccatggctttaagaa 372
Query: 372 gaaagcctgatgtactggtaaatgttatgccaaagataatgggaaacaataaatatctgg 431
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 373 gaaagcctgatgttctggtaaatgttatgccaaagataatgggaaacaataaatatcttg 432
Query: 432 gacaggaaaagcttcccatcattgtctgggttattgctcaggcctctcaaggtgacctag 491
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 433 gacaggaaaagctgcccatcattgtctgggttattgctcaggcatctcaaggtgacctag 492
Query: 492 tgtctggcatgttttgctgggctcattctctatttcccacattatgtgcgaagtcaagtg 551
|| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 493 tgactggcatgttttgctgggctcattctctatttcccacattatgtgcaaagtcaagtg 552
Query: 552 ggaatcccc 560
|||||||||
Sbjct: 553 ggaatcccc 561
>gb|CN124566.1|CN124566 RHOH1_5_D02.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_5_D02_A002 5', mRNA sequence
Length = 655
Score = 854 bits (431), Expect = 0.0
Identities = 532/567 (93%), Gaps = 9/567 (1%)
Strand = Plus / Plus
Query: 367 aagaagaaagcctgatgtactggtaaatgttatgccaaagataatgggaaacaataaata 426
|||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct: 5 aagaagaaagcctgatgttctggtaaatgttatgccaaagttaatgggaaacaataaata 64
Query: 427 tctgggacaggaaaagcttcccatcattgtctgggttattgctcaggcctctcaaggtga 486
||| |||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||
Sbjct: 65 tcttggacaggaaaagctgcccttcattgtctgggttattgctcaggcatctcaaggtga 124
Query: 487 cctagtgtctggcatgttttgctgggctcattctctatttcccacattatgtgcgaagtc 546
||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 125 cctagtgactggcatgttttgctgggctcattctctatttcccacattatgtgcaaagtc 184
Query: 547 aagtgggaatccccttgcaagagatttggttttgcagttgcttgaaagaattttgtctgt 606
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 aagtgggaatccccttacaagagatttggttttgcagttgcttgaaagaattttgtctgt 244
Query: 607 caccaaagctcgttctatattattgaatggtgctgttagaaagggagaacgcttagttcc 666
|||||||||||||||||| |||||||||||||||||||||| ||| |||||| |||||||
Sbjct: 245 caccaaagctcgttctatcttattgaatggtgctgttagaaggggggaacgcctagttcc 304
Query: 667 ccctgtttcatttgacttgttcatgagagccacatttcctgtttctaatgctcgagtgaa 726
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 305 ccctgtttcatttgacttgttcatgagagccacatttcctgtttctaatgctcgggtgaa 364
Query: 727 ggctacagaaaggtttgaagcagcctacccaatgatcaaggagttggctcttgccggtcc 786
|||||| ||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct: 365 ggctacggaaaggtttgaagcagcctacccaacaatcaaggagttggctcttgctggtcc 424
Query: 787 tcctggctcaaaaactgtgaaacaagcatcacaacagcttttacctttgtgtgcaaaagc 846
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 425 tcctggctctaaaactgtgaaacaagcatcacaacagctgttacctttgtgtgcaaaagc 484
Query: 847 aatgcaagaaaacaacgcagagctcaccagggaggctgttgatgttttcatttggtgctt 906
||||||||||| ||||||||||||||||| |||||| ||||||||||||||
Sbjct: 485 aatgcaagaaa---------agctcaccagggaggctactgatgtattcatttggtgctt 535
Query: 907 aactcaaaatgcagagtcgtacaagca 933
|||||||||||| |||| ||||||||
Sbjct: 536 gactcaaaatgcacagtcctacaagca 562
>gb|CN124489.1|CN124489 RHOH1_5_D02.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_5_D02_A002 3', mRNA sequence
Length = 818
Score = 500 bits (252), Expect = e-139
Identities = 326/352 (92%), Gaps = 9/352 (2%)
Strand = Plus / Plus
Query: 582 agttgcttgaaagaattttgtctgtcaccaaagctcgttctatattattgaatggtgctg 641
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1 agttgcttgaaagaattttgtctgtcaccaaagctcgttctatcttattgaatggtgctg 60
Query: 642 ttagaaagggagaacgcttagttccccctgtttcatttgacttgttcatgagagccacat 701
|||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttagaaggggggaacgcctagttccccctgtttcatttgacttgttcatgagagccacat 120
Query: 702 ttcctgtttctaatgctcgagtgaaggctacagaaaggtttgaagcagcctacccaatga 761
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |
Sbjct: 121 ttcctgtttctaatgctcgggtgaaggctacggaaaggtttgaagcagcctacccaacaa 180
Query: 762 tcaaggagttggctcttgccggtcctcctggctcaaaaactgtgaaacaagcatcacaac 821
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct: 181 tcaaggagttggctcttgctggtcctcctggctctaaaactgtgaaacaagcatcacaac 240
Query: 822 agcttttacctttgtgtgcaaaagcaatgcaagaaaacaacgcagagctcaccagggagg 881
|||| ||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 241 agctgttacctttgtgtgcaaaagcaatgcaagaaa---------agctccccagggagg 291
Query: 882 ctgttgatgttttcatttggtgcttaactcaaaatgcagagtcgtacaagca 933
|| |||||| |||||||||||||| ||||||||||||||||| ||||||||
Sbjct: 292 ctactgatgtattcatttggtgcttgactcaaaatgcagagtcctacaagca 343
>gb|CW171765.1|CW171765 104_582_11155916_116_36532_070 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11155916, DNA
sequence
Length = 661
Score = 303 bits (153), Expect = 2e-080
Identities = 174/181 (96%)
Strand = Plus / Plus
Query: 156 tgtgccatattcctgaggctgtcatcaagactgcgagtgattggatcagtcaaagatctt 215
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 tgtgccatattcctgaggctgtcatcaagactgcgagtgattggatcagtcaaagatctt 348
Query: 216 ctgatgccctgggagactttgttttgtggtgtatagatagcatcatgtctgaattgtcag 275
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 349 ctgatgccctgggagactttgttttgtggtgtatagacagcatcatgtctgaattgtcag 408
Query: 276 gtccatcagctggccctaagggttcaaagaaggttgcacaacagtctccaagggcccagg 335
| |||||||| || ||||||||||||||||||||||| ||||| ||||||||||| ||||
Sbjct: 409 gcccatcagcaggacctaagggttcaaagaaggttgctcaacaatctccaagggctcagg 468
Query: 336 t 336
|
Sbjct: 469 t 469
>gb|CW171766.1|CW171766 104_582_11155916_148_36531_070 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11155916, DNA
sequence
Length = 737
Score = 250 bits (126), Expect = 2e-064
Identities = 138/142 (97%)
Strand = Plus / Minus
Query: 332 caggttgcaatctttgttgttcttgccatgactttaagaagaaagcctgatgtactggta 391
|||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct: 226 caggttgcaatctttgttgttcttgccatggctttaagaagaaagcctgatgttctggta 167
Query: 392 aatgttatgccaaagataatgggaaacaataaatatctgggacaggaaaagcttcccatc 451
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct: 166 aatgttatgccaaagataatgggaaacaataaatatcttggacaggaaaagctgcccatc 107
Query: 452 attgtctgggttattgctcagg 473
||||||||||||||||||||||
Sbjct: 106 attgtctgggttattgctcagg 85
>gb|CW271582.1|CW271582 104_743_11403073_148_35342_001 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11403073, DNA
sequence
Length = 707
Score = 250 bits (126), Expect = 2e-064
Identities = 138/142 (97%)
Strand = Plus / Minus
Query: 332 caggttgcaatctttgttgttcttgccatgactttaagaagaaagcctgatgtactggta 391
|||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct: 476 caggttgcaatctttgttgttcttgccatggctttaagaagaaagcctgatgttctggta 417
Query: 392 aatgttatgccaaagataatgggaaacaataaatatctgggacaggaaaagcttcccatc 451
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct: 416 aatgttatgccaaagataatgggaaacaataaatatcttggacaggaaaagctgcccatc 357
Query: 452 attgtctgggttattgctcagg 473
||||||||||||||||||||||
Sbjct: 356 attgtctgggttattgctcagg 335
Score = 224 bits (113), Expect = 1e-056
Identities = 122/125 (97%)
Strand = Plus / Minus
Query: 470 caggcctctcaaggtgacctagtgtctggcatgttttgctgggctcattctctatttccc 529
||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 232 caggcatctcaaggtgacctagtgactggcatgttttgctgggctcattctctatttccc 173
Query: 530 acattatgtgcgaagtcaagtgggaatccccttgcaagagatttggttttgcagttgctt 589
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 172 acattatgtgcaaagtcaagtgggaatccccttgcaagagatttggttttgcagttgctt 113
Query: 590 gaaag 594
|||||
Sbjct: 112 gaaag 108
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 256,683
Number of Sequences: 832831
Number of extensions: 256683
Number of successful extensions: 66883
Number of sequences better than 0.5: 7
Number of HSP's better than 0.5 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 66873
Number of HSP's gapped (non-prelim): 10
length of query: 1118
length of database: 491,359,669
effective HSP length: 20
effective length of query: 1098
effective length of database: 474,703,049
effective search space: 521223947802
effective search space used: 521223947802
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)