BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3802264.2.1
(1189 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW383135.1|CW383135 fsbb001f065h18k0 Sorghum methylation... 537 e-151
gb|CW092289.1|CW092289 104_454_10999062_114_33037_019 Sorgh... 523 e-146
gb|CL181939.1|CL181939 104_393_10897084_116_31922_076 Sorgh... 490 e-136
gb|CW383134.1|CW383134 fsbb001f065h18f0 Sorghum methylation... 394 e-108
gb|CF481671.1|CF481671 POL1_73_G11.b1_A002 Pollen Sorghum b... 228 9e-058
gb|CW290063.1|CW290063 104_769_11412809_148_35559_077 Sorgh... 222 6e-056
gb|CW131844.1|CW131844 104_515_11115890_148_34793_015 Sorgh... 111 2e-022
gb|CW290062.1|CW290062 104_769_11412809_116_35555_077 Sorgh... 92 1e-016
gb|CL187168.1|CL187168 104_402_10900699_114_32432_072 Sorgh... 64 3e-008
gb|CW073512.1|CW073512 104_336_10780083_116_31366_099 Sorgh... 64 3e-008
gb|CW096194.1|CW096194 104_461_11001758_116_34333_051 Sorgh... 64 3e-008
gb|CW022238.1|CW022238 104_161_10431724_1_30006 Sorghum met... 56 8e-006
gb|CW022239.1|CW022239 104_161_10431724_5_30007 Sorghum met... 56 8e-006
gb|CW164356.1|CW164356 104_572_11151945_148_36462_041 Sorgh... 56 8e-006
gb|CW228817.1|CW228817 104_668_11206590_116_37254_017 Sorgh... 56 8e-006
gb|CW236952.1|CW236952 104_693_11215895_148_37519_094 Sorgh... 56 8e-006
gb|CW388822.1|CW388822 fsbb001f073l23f0 Sorghum methylation... 56 8e-006
gb|CW420858.1|CW420858 fsbb001f128g08k0 Sorghum methylation... 56 8e-006
gb|CW435138.1|CW435138 fsbb001f151c07f0 Sorghum methylation... 56 8e-006
gb|BE357367.1|BE357367 DG1_148_A07.g1_A002 Dark Grown 1 (DG... 56 8e-006
gb|CD205740.1|CD205740 HS1_18_E08.b1_A012 Heat-shocked seed... 56 8e-006
gb|CD220430.1|CD220430 CCC1_67_H06.b1_A007 Callus culture/c... 56 8e-006
gb|CF071078.1|CF071078 FE1_15_D12.b1_A002 Iron-deficient se... 56 8e-006
gb|CX611325.1|CX611325 ANR1_24_B05.b1_A002 Anaerobic roots ... 56 8e-006
gb|CX613114.1|CX613114 GABR1_6_G11.b1_A002 GA- or brassinol... 56 8e-006
gb|CX616301.1|CX616301 GABR1_27_D03.b1_A002 GA- or brassino... 56 8e-006
gb|CX617846.1|CX617846 GABR1_36_D11.b1_A002 GA- or brassino... 56 8e-006
gb|CX619537.1|CX619537 GABR1_46_D02.b1_A002 GA- or brassino... 56 8e-006
gb|CW214645.1|CW214645 104_646_11194123_148_37054_070 Sorgh... 52 1e-004
gb|CW269732.1|CW269732 104_740_11401967_148_35316_082 Sorgh... 52 1e-004
gb|CW269733.1|CW269733 104_740_11401967_148_36230_082 Sorgh... 52 1e-004
gb|BZ691299.1|BZ691299 SP__Ba0006A20.r SP__Ba Sorghum propi... 50 5e-004
gb|CW126620.1|CW126620 104_507_11112994_148_34731_041 Sorgh... 50 5e-004
gb|CW451552.1|CW451552 fsbb001f191k19f0 Sorghum methylation... 50 5e-004
gb|CW784947.1|CW784947 SP__Ba0006A20.r SP__Ba Sorghum propi... 50 5e-004
gb|BZ628294.1|BZ628294 ih59b05.b1 WGS-SbicolorF (DH5a methy... 48 0.002
gb|CW176515.1|CW176515 104_589_11158529_116_36582_071 Sorgh... 48 0.002
gb|CW484465.1|CW484465 fsbb001f246j24f0 Sorghum methylation... 48 0.002
gb|CW027032.1|CW027032 104_253_10498282_114_30533 Sorghum m... 46 0.007
gb|CW033978.1|CW033978 104_263_10502273_114_30359 Sorghum m... 46 0.007
gb|CW126619.1|CW126619 104_507_11112994_116_34735_041 Sorgh... 46 0.007
gb|CW164355.1|CW164355 104_572_11151945_116_36461_041 Sorgh... 46 0.007
gb|CW230233.1|CW230233 104_671_11207740_116_37270_002 Sorgh... 46 0.007
gb|CW230234.1|CW230234 104_671_11207740_148_37266_002 Sorgh... 46 0.007
gb|CW459444.1|CW459444 fsbb001f206d04f0 Sorghum methylation... 46 0.007
gb|CW502518.1|CW502518 fsbb001f298o09k0 Sorghum methylation... 46 0.007
gb|CD220536.1|CD220536 CCC1_67_H06.g1_A007 Callus culture/c... 46 0.007
gb|CN138249.1|CN138249 OX1_62_D07.g1_A002 Oxidatively-stres... 46 0.007
gb|BZ332122.1|BZ332122 hx25e06.g1 WGS-SbicolorF (JM107 adap... 44 0.029
gb|BZ346525.1|BZ346525 hv20b02.b1 WGS-SbicolorF (JM107 adap... 44 0.029
gb|CL159872.1|CL159872 104_350_10804575_116_31823_015 Sorgh... 44 0.029
gb|CL182231.1|CL182231 104_393_10897285_148_31921_277 Sorgh... 44 0.029
gb|CL194650.1|CL194650 104_419_10941796_114_32293_010 Sorgh... 44 0.029
gb|CW113155.1|CW113155 104_487_11105287_148_34549_026 Sorgh... 44 0.029
gb|CW152235.1|CW152235 104_553_11144380_116_36325_010 Sorgh... 44 0.029
gb|CW152236.1|CW152236 104_553_11144380_148_36330_010 Sorgh... 44 0.029
gb|CW197932.1|CW197932 104_622_11181944_116_36828_024 Sorgh... 44 0.029
gb|CW197933.1|CW197933 104_622_11181944_148_36827_024 Sorgh... 44 0.029
gb|CW228058.1|CW228058 104_667_11206152_116_37242_084 Sorgh... 44 0.029
gb|CW238384.1|CW238384 104_695_11216702_116_37418_059 Sorgh... 44 0.029
gb|CW295550.1|CW295550 104_776_11460988_148_35615_002 Sorgh... 44 0.029
gb|CW369103.1|CW369103 fsbb001f043f20f0 Sorghum methylation... 44 0.029
gb|CW401861.1|CW401861 fsbb001f092o02f0 Sorghum methylation... 44 0.029
gb|CW414201.1|CW414201 fsbb001f113l17k0 Sorghum methylation... 44 0.029
gb|BF585912.1|BF585912 FM1_25_A08.b1_A003 Floral-Induced Me... 44 0.029
gb|CN138723.1|CN138723 OX1_13_C03.g1_A002 Oxidatively-stres... 44 0.029
gb|BZ779600.1|BZ779600 ii33c07.b1 WGS-SbicolorF (DH5a methy... 42 0.12
gb|CL160476.1|CL160476 104_351_10805016_116_31825_072 Sorgh... 42 0.12
gb|CL192885.1|CL192885 104_416_10940561_114_32265_077 Sorgh... 42 0.12
gb|CW038949.1|CW038949 104_271_10505211_115_30388 Sorghum m... 42 0.12
gb|CW072435.1|CW072435 104_325_10592265_114_30535 Sorghum m... 42 0.12
gb|CW074741.1|CW074741 104_351_10805016_114_31824_072 Sorgh... 42 0.12
gb|CW080790.1|CW080790 104_416_10940561_114_32341_077 Sorgh... 42 0.12
gb|CW142490.1|CW142490 104_533_11136886_116_34937_081 Sorgh... 42 0.12
gb|CW142491.1|CW142491 104_533_11136886_148_34941_081 Sorgh... 42 0.12
gb|CW152269.1|CW152269 104_553_11144399_148_36329_090 Sorgh... 42 0.12
gb|CW166954.1|CW166954 104_576_11153336_148_36679_032 Sorgh... 42 0.12
gb|CW173077.1|CW173077 104_584_11156648_148_36543_022 Sorgh... 42 0.12
gb|CW203020.1|CW203020 104_629_11185408_116_36915_056 Sorgh... 42 0.12
gb|CW203021.1|CW203021 104_629_11185408_148_37061_056 Sorgh... 42 0.12
gb|CW221667.1|CW221667 104_656_11198033_116_37168_065 Sorgh... 42 0.12
gb|CW235785.1|CW235785 104_691_11215204_116_37493_010 Sorgh... 42 0.12
gb|CW235786.1|CW235786 104_691_11215204_148_37492_010 Sorgh... 42 0.12
gb|CW270367.1|CW270367 104_742_11402377_116_35332_015 Sorgh... 42 0.12
gb|CW288040.1|CW288040 104_766_11411737_116_35531_009 Sorgh... 42 0.12
gb|CW288041.1|CW288041 104_766_11411737_148_35535_009 Sorgh... 42 0.12
gb|CW412242.1|CW412242 fsbb001f107m14k0 Sorghum methylation... 42 0.12
gb|CW424107.1|CW424107 fsbb001f134e09f0 Sorghum methylation... 42 0.12
gb|CW472399.1|CW472399 fsbb001f227f05f0 Sorghum methylation... 42 0.12
gb|CD209566.1|CD209566 HS1_43_D02.b1_A012 Heat-shocked seed... 42 0.12
gb|CD212429.1|CD212429 HS1_5_B10.b1_A012 Heat-shocked seedl... 42 0.12
gb|CD430324.1|CD430324 ETH1_18_A11.b1_A002 Ethylene-treated... 42 0.12
gb|CN136305.1|CN136305 OX1_42_D11.b1_A002 Oxidatively-stres... 42 0.12
gb|CN136376.1|CN136376 OX1_42_D11.g1_A002 Oxidatively-stres... 42 0.12
gb|CN136955.1|CN136955 OX1_54_G09.b1_A002 Oxidatively-stres... 42 0.12
gb|CN147490.1|CN147490 WOUND1_50_C05.b1_A002 Wounded leaves... 42 0.12
gb|CN150450.1|CN150450 WOUND1_69_F05.b1_A002 Wounded leaves... 42 0.12
gb|CN150524.1|CN150524 WOUND1_69_F05.g1_A002 Wounded leaves... 42 0.12
gb|CN151878.1|CN151878 WOUND1_78_G02.b1_A002 Wounded leaves... 42 0.12
gb|CX612768.1|CX612768 GABR1_4_H02.b1_A002 GA- or brassinol... 42 0.12
gb|CX612923.1|CX612923 GABR1_5_F03.b1_A002 GA- or brassinol... 42 0.12
gb|CX615452.1|CX615452 GABR1_20_F01.b1_A002 GA- or brassino... 42 0.12
gb|CX617681.1|CX617681 GABR1_35_D08.b1_A002 GA- or brassino... 42 0.12
gb|CL177305.1|CL177305 104_384_10893746_116_31916_194 Sorgh... 40 0.46
gb|CW055949.1|CW055949 104_297_10517417_114_30172 Sorghum m... 40 0.46
gb|CW057072.1|CW057072 104_299_10518022_114_30169 Sorghum m... 40 0.46
gb|CW103255.1|CW103255 104_471_11011784_116_34427_018 Sorgh... 40 0.46
gb|CW295549.1|CW295549 104_776_11460988_116_35619_002 Sorgh... 40 0.46
gb|CW471036.1|CW471036 fsbb001f224k08f0 Sorghum methylation... 40 0.46
gb|CD222935.1|CD222935 CCC1_25_F03.b1_A007 Callus culture/c... 40 0.46
gb|CF432155.1|CF432155 NIT1_14_G07.g1_A002 Nitrogen-deficie... 40 0.46
gb|CX612015.1|CX612015 ANR1_28_B10.b1_A002 Anaerobic roots ... 40 0.46
>gb|CW383135.1|CW383135 fsbb001f065h18k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f065h18, DNA
sequence
Length = 638
Score = 537 bits (271), Expect = e-151
Identities = 352/379 (92%)
Strand = Plus / Plus
Query: 172 gacgagctgctgtgggccgcgacctggctgtacctggcgacgaggcggcaggtgtacgcg 231
||||||||||||||||| ||||| ||||| ||||||||||||| ||| ||||||||||||
Sbjct: 227 gacgagctgctgtgggctgcgacgtggctttacctggcgacgaagcgtcaggtgtacgcg 286
Query: 232 gacttcatcgcccacgaggccatctcgtcgagcgtggccgagttcagctgggacctcaag 291
||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 287 gacttcatcacccacgaggccatctcgtcgagcgtggccgaattcagctgggacctcaag 346
Query: 292 ttccccggcgcgcaggtgctgctggccgagttcaacatgacctcggcgggcggcgcgcag 351
|||||||||||||||||||| |||||||||||||||||||| || | ||||||||||||
Sbjct: 347 ttccccggcgcgcaggtgctcctggccgagttcaacatgacgtccggcggcggcgcgcag 406
Query: 352 aacttcaagtcgcaggcggacaacttcgtgtgcgcggtgctgccggacacggcgttccac 411
||||||||| |||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct: 407 aacttcaaggtgcaggcggacaacttcgtgtgcgcggtgctcccggacacgccgttccac 466
Query: 412 caggtgttcatcaccccgggcggcgtgatccacctccgcgacggcgccaactcgcagtac 471
|||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct: 467 caggtgttcatcaccccgggcggcgtgatccacctccgggacggcgccaacacgcagtac 526
Query: 472 gtgaccagcacggcgttcctgctggtggtgtacgcggacctgctgctgcggacggggcag 531
||||| |||||| |||||||| | ||||| ||| | ||||||||||||||||||||||||
Sbjct: 527 gtgacgagcacgtcgttcctgttcgtggtctactccgacctgctgctgcggacggggcag 586
Query: 532 acggtgctgtgcgggaacc 550
||||| ||||||||||||
Sbjct: 587 tcggtgatgtgcgggaacc 605
Score = 111 bits (56), Expect = 2e-022
Identities = 74/80 (92%)
Strand = Plus / Plus
Query: 93 gctgttcacgttcgccaagagccacctgggcagctacgacggcgagtgccccttctactg 152
||||||| |||||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct: 58 gctgttcctgttcgccaaggctcaccagggcagctacgacggcgagtgccccttctactg 117
Query: 153 ctcctactcgggctacaacg 172
||||||||||||||||||||
Sbjct: 118 ctcctactcgggctacaacg 137
>gb|CW092289.1|CW092289 104_454_10999062_114_33037_019 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10999062, DNA
sequence
Length = 404
Score = 523 bits (264), Expect = e-146
Identities = 369/404 (91%)
Strand = Plus / Plus
Query: 295 cccggcgcgcaggtgctgctggccgagttcaacatgacctcggcgggcggcgcgcagaac 354
||||||||||||||||| |||||||||||||||||||| || | |||||||||||||||
Sbjct: 1 cccggcgcgcaggtgctcctggccgagttcaacatgacgtccggcggcggcgcgcagaac 60
Query: 355 ttcaagtcgcaggcggacaacttcgtgtgcgcggtgctgccggacacggcgttccaccag 414
|||||| |||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct: 61 ttcaaggtgcaggcggacaacttcgtgtgcgcggtgctcccggacacgccgttccaccag 120
Query: 415 gtgttcatcaccccgggcggcgtgatccacctccgcgacggcgccaactcgcagtacgtg 474
||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct: 121 gtgttcatcaccccgggcggcgtgatccacctccgggacggcgccaacacgcagtacgtg 180
Query: 475 accagcacggcgttcctgctggtggtgtacgcggacctgctgctgcggacggggcagacg 534
|| |||||| |||||||| | ||||| ||| | |||||||||||||||||||||||| ||
Sbjct: 181 acgagcacgtcgttcctgttcgtggtctactccgacctgctgctgcggacggggcagtcg 240
Query: 535 gtgctgtgcgggaaccagccgctgcccccggcccggttgcacgagttcgcgcggcagcag 594
||| |||||||||||||||| || | ||||| ||| ||| ||||||||||||||||||
Sbjct: 241 gtgatgtgcgggaaccagcccgtggcgccggcgcggctgcgggagttcgcgcggcagcag 300
Query: 595 atggactacctgctgggcgccaacccgaggcacagctcctacgtcgtgggcttcggcgcc 654
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 301 atggactacctgctgggcgccaacccgcggcacagctcctacgtcgtgggcttcggcgcc 360
Query: 655 aacccgcccacgcagccgcaccaccgcggcgcatccacccccgt 698
||| ||||||| |||||||||||| |||| || || ||||||||
Sbjct: 361 aactcgcccactcagccgcaccactgcggggcgtcgacccccgt 404
>gb|CL181939.1|CL181939 104_393_10897084_116_31922_076 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10897084, DNA
sequence
Length = 367
Score = 490 bits (247), Expect = e-136
Identities = 337/367 (91%)
Strand = Plus / Plus
Query: 434 gcgtgatccacctccgcgacggcgccaactcgcagtacgtgaccagcacggcgttcctgc 493
|||||||||||||||| |||||||||||| ||||||||||||| |||||| ||||||||
Sbjct: 1 gcgtgatccacctccgggacggcgccaacacgcagtacgtgacgagcacgtcgttcctgt 60
Query: 494 tggtggtgtacgcggacctgctgctgcggacggggcagacggtgctgtgcgggaaccagc 553
| ||||| ||| | |||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct: 61 tcgtggtctactccgacctgctgctgcggacggggcagtcggtgatgtgcgggaaccagc 120
Query: 554 cgctgcccccggcccggttgcacgagttcgcgcggcagcagatggactacctgctgggcg 613
| || | ||||| ||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct: 121 ccgtggcgccggcgcggctgcgggagttcgcgcggcagcagatggactacctgctgggcg 180
Query: 614 ccaacccgaggcacagctcctacgtcgtgggcttcggcgccaacccgcccacgcagccgc 673
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 181 ccaacccgcggcacagctcctacgtcgtgggcttcggcgccaactcgcccacgcagccgc 240
Query: 674 accaccgcggcgcatccacccccgtgctgccccccggcacggacgtcaactgcggcctca 733
|||||||||| || || || ||||||||||| |||||||| |||||||||||||| ||||
Sbjct: 241 accaccgcggggcgtcgacgcccgtgctgccacccggcaccgacgtcaactgcgggctca 300
Query: 734 gcttcggggactggatggcgcccgacaagcccaaccccaacgagctcaccggcgccatcg 793
|||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 301 gcttcggggagtggatggcgcccgacaggcccaaccccaacgagctcaccggcgccatcg 360
Query: 794 tcggcgg 800
|||||||
Sbjct: 361 tcggcgg 367
>gb|CW383134.1|CW383134 fsbb001f065h18f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f065h18, DNA
sequence
Length = 583
Score = 394 bits (199), Expect = e-108
Identities = 235/247 (95%)
Strand = Plus / Minus
Query: 694 cccgtgctgccccccggcacggacgtcaactgcggcctcagcttcggggactggatggcg 753
||||||||||| |||||||| |||||||||||||| |||||||||||||| |||||||||
Sbjct: 571 cccgtgctgccacccggcaccgacgtcaactgcgggctcagcttcggggagtggatggcg 512
Query: 754 cccgacaagcccaaccccaacgagctcaccggcgccatcgtcggcgggcccgacaagaac 813
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 cccgacaggcccaaccccaacgagctcaccggcgccatcgtcggcgggcccgacaagaac 452
Query: 814 gacggcttcgtggacaagcgcggcaactcctcctacaccgagccctgcacctacatcaac 873
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 451 gacggcttcgtggacaagcgcggcaactcctcctacaccgagccatgcacctacatcaac 392
Query: 874 tccctcgccatcggcccgctcgccgcgctcgccgtccgaggcgtgcagctcgtcgccacg 933
|| ||||| ||||||||||||||||||||||||||||| |||| |||||||||||| |||
Sbjct: 391 tcgctcgcaatcggcccgctcgccgcgctcgccgtccgcggcgcgcagctcgtcgcaacg 332
Query: 934 cagtgat 940
|| ||||
Sbjct: 331 cactgat 325
>gb|CF481671.1|CF481671 POL1_73_G11.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_73_G11_A002 3', mRNA sequence
Length = 440
Score = 228 bits (115), Expect = 9e-058
Identities = 149/159 (93%), Gaps = 1/159 (0%)
Strand = Plus / Plus
Query: 783 cggcgccatcgtcggcgggcccgacaagaacgacggcttcgtggacaagcgcggcaactc 842
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 1 cggcgccattgtcggcgggcccgacaagaacgacggcttcgtggacaagcgtggcaactc 60
Query: 843 ctcct-acaccgagccctgcacctacatcaactccctcgccatcggcccgctcgccgcgc 901
||||| |||||||||| ||||||||||||||||| ||||| |||||||||||||||||||
Sbjct: 61 ctccttacaccgagccatgcacctacatcaactcgctcgcaatcggcccgctcgccgcgc 120
Query: 902 tcgccgtccgaggcgtgcagctcgtcgccacgcagtgat 940
|||||||||| |||| |||||||||||| ||||| ||||
Sbjct: 121 tcgccgtccgcggcgcgcagctcgtcgcaacgcactgat 159
>gb|CW290063.1|CW290063 104_769_11412809_148_35559_077 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11412809, DNA
sequence
Length = 391
Score = 222 bits (112), Expect = 6e-056
Identities = 133/140 (95%)
Strand = Plus / Minus
Query: 172 gacgagctgctgtgggccgcgacctggctgtacctggcgacgaggcggcaggtgtacgcg 231
||||||||||||||||| ||||| ||||| ||||||||||||| ||| ||||||||||||
Sbjct: 142 gacgagctgctgtgggctgcgacgtggctttacctggcgacgaagcgtcaggtgtacgcg 83
Query: 232 gacttcatcgcccacgaggccatctcgtcgagcgtggccgagttcagctgggacctcaag 291
||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 82 gacttcatcacccacgaggccatctcgtcgagcgtggccgaattcagctgggacctcaag 23
Query: 292 ttccccggcgcgcaggtgct 311
||||||||||||||||||||
Sbjct: 22 ttccccggcgcgcaggtgct 3
Score = 111 bits (56), Expect = 2e-022
Identities = 74/80 (92%)
Strand = Plus / Minus
Query: 93 gctgttcacgttcgccaagagccacctgggcagctacgacggcgagtgccccttctactg 152
||||||| |||||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct: 311 gctgttcctgttcgccaaggctcaccagggcagctacgacggcgagtgccccttctactg 252
Query: 153 ctcctactcgggctacaacg 172
||||||||||||||||||||
Sbjct: 251 ctcctactcgggctacaacg 232
>gb|CW131844.1|CW131844 104_515_11115890_148_34793_015 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11115890, DNA
sequence
Length = 678
Score = 111 bits (56), Expect = 2e-022
Identities = 74/80 (92%)
Strand = Plus / Minus
Query: 93 gctgttcacgttcgccaagagccacctgggcagctacgacggcgagtgccccttctactg 152
||||||| |||||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct: 102 gctgttcctgttcgccaaggctcaccagggcagctacgacggcgagtgccccttctactg 43
Query: 153 ctcctactcgggctacaacg 172
||||||||||||||||||||
Sbjct: 42 ctcctactcgggctacaacg 23
Score = 91.7 bits (46), Expect = 1e-016
Identities = 70/78 (89%)
Strand = Plus / Minus
Query: 16 gccgcgttcgccgcctcgtccatggtgttccgcgacgacaagaagtactcgcgcaagctg 75
||||| ||||||||||| ||||||||||||||| |||||||||||||||||||| |||
Sbjct: 298 gccgccttcgccgcctcctccatggtgttccgcaacgacaagaagtactcgcgcgcgctc 239
Query: 76 ctgaacaaggcgaagctg 93
|| |||||||| ||||||
Sbjct: 238 ctcaacaaggccaagctg 221
>gb|CW290062.1|CW290062 104_769_11412809_116_35555_077 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11412809, DNA
sequence
Length = 494
Score = 91.7 bits (46), Expect = 1e-016
Identities = 70/78 (89%)
Strand = Plus / Plus
Query: 16 gccgcgttcgccgcctcgtccatggtgttccgcgacgacaagaagtactcgcgcaagctg 75
||||| ||||||||||| ||||||||||||||| |||||||||||||||||||| |||
Sbjct: 328 gccgccttcgccgcctcctccatggtgttccgcaacgacaagaagtactcgcgcgcgctc 387
Query: 76 ctgaacaaggcgaagctg 93
|| |||||||| ||||||
Sbjct: 388 ctcaacaaggccaagctg 405
>gb|CL187168.1|CL187168 104_402_10900699_114_32432_072 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10900699, DNA
sequence
Length = 677
Score = 63.9 bits (32), Expect = 3e-008
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 145 ttctactgctcctactcgggctacaacgacgagctgctgtgggc 188
||||||||||||||||| || ||| |||||||||||||||||||
Sbjct: 341 ttctactgctcctactccgggtacgacgacgagctgctgtgggc 384
>gb|CW073512.1|CW073512 104_336_10780083_116_31366_099 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10780083, DNA
sequence
Length = 644
Score = 63.9 bits (32), Expect = 3e-008
Identities = 41/44 (93%)
Strand = Plus / Minus
Query: 145 ttctactgctcctactcgggctacaacgacgagctgctgtgggc 188
||||||||||||||||| || ||| |||||||||||||||||||
Sbjct: 124 ttctactgctcctactccgggtacgacgacgagctgctgtgggc 81
>gb|CW096194.1|CW096194 104_461_11001758_116_34333_051 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11001758, DNA
sequence
Length = 483
Score = 63.9 bits (32), Expect = 3e-008
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 145 ttctactgctcctactcgggctacaacgacgagctgctgtgggc 188
||||||||||||||||| || ||| |||||||||||||||||||
Sbjct: 216 ttctactgctcctactccgggtacgacgacgagctgctgtgggc 259
>gb|CW022238.1|CW022238 104_161_10431724_1_30006 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10431724, DNA
sequence
Length = 702
Score = 56.0 bits (28), Expect = 8e-006
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 767 accccaacgagctcaccggcgccatcgtcggcgggcccgacaagaacgacggcttc 822
|||||||| ||| || |||||||| ||||||||||| |||| |||||||||||||
Sbjct: 195 accccaacctgctgacgggcgccatggtcggcgggccagacaggaacgacggcttc 250
>gb|CW022239.1|CW022239 104_161_10431724_5_30007 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10431724, DNA
sequence
Length = 539
Score = 56.0 bits (28), Expect = 8e-006
Identities = 49/56 (87%)
Strand = Plus / Minus
Query: 767 accccaacgagctcaccggcgccatcgtcggcgggcccgacaagaacgacggcttc 822
|||||||| ||| || |||||||| ||||||||||| |||| |||||||||||||
Sbjct: 527 accccaacctgctgacgggcgccatggtcggcgggccagacaggaacgacggcttc 472
>gb|CW164356.1|CW164356 104_572_11151945_148_36462_041 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11151945, DNA
sequence
Length = 735
Score = 56.0 bits (28), Expect = 8e-006
Identities = 49/56 (87%)
Strand = Plus / Minus
Query: 767 accccaacgagctcaccggcgccatcgtcggcgggcccgacaagaacgacggcttc 822
|||||||| ||| || |||||||| ||||||||||| |||| |||||||||||||
Sbjct: 440 accccaacctgctgacgggcgccatggtcggcgggccagacaggaacgacggcttc 385
>gb|CW228817.1|CW228817 104_668_11206590_116_37254_017 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11206590, DNA
sequence
Length = 650
Score = 56.0 bits (28), Expect = 8e-006
Identities = 55/64 (85%)
Strand = Plus / Plus
Query: 138 gtgccccttctactgctcctactcgggctacaacgacgagctgctgtgggccgcgacctg 197
|||||| | ||||||||||||||| || ||| | |||||||||||||||| |||| | ||
Sbjct: 423 gtgcccgtactactgctcctactccgggtaccaggacgagctgctgtggggcgcggcgtg 482
Query: 198 gctg 201
||||
Sbjct: 483 gctg 486
>gb|CW236952.1|CW236952 104_693_11215895_148_37519_094 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11215895, DNA
sequence
Length = 667
Score = 56.0 bits (28), Expect = 8e-006
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 767 accccaacgagctcaccggcgccatcgtcggcgggcccgacaagaacgacggcttc 822
|||||||| ||| || |||||||| ||||||||||| |||| |||||||||||||
Sbjct: 192 accccaacctgctgacgggcgccatggtcggcgggccagacaggaacgacggcttc 247
>gb|CW388822.1|CW388822 fsbb001f073l23f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f073l23, DNA
sequence
Length = 581
Score = 56.0 bits (28), Expect = 8e-006
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 767 accccaacgagctcaccggcgccatcgtcggcgggcccgacaagaacgacggcttc 822
|||||||| ||| || |||||||| ||||||||||| |||| |||||||||||||
Sbjct: 227 accccaacctgctgacgggcgccatggtcggcgggccagacaggaacgacggcttc 282
>gb|CW420858.1|CW420858 fsbb001f128g08k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f128g08, DNA
sequence
Length = 645
Score = 56.0 bits (28), Expect = 8e-006
Identities = 55/64 (85%)
Strand = Plus / Minus
Query: 138 gtgccccttctactgctcctactcgggctacaacgacgagctgctgtgggccgcgacctg 197
|||||| | ||||||||||||||| || ||| | |||||||||||||||| |||| | ||
Sbjct: 567 gtgcccgtactactgctcctactccgggtaccaggacgagctgctgtggggcgcggcgtg 508
Query: 198 gctg 201
||||
Sbjct: 507 gctg 504
>gb|CW435138.1|CW435138 fsbb001f151c07f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f151c07, DNA
sequence
Length = 650
Score = 56.0 bits (28), Expect = 8e-006
Identities = 55/64 (85%)
Strand = Plus / Minus
Query: 138 gtgccccttctactgctcctactcgggctacaacgacgagctgctgtgggccgcgacctg 197
|||||| | ||||||||||||||| || ||| | |||||||||||||||| |||| | ||
Sbjct: 256 gtgcccgtactactgctcctactccgggtaccaggacgagctgctgtggggcgcggcgtg 197
Query: 198 gctg 201
||||
Sbjct: 196 gctg 193
>gb|BE357367.1|BE357367 DG1_148_A07.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 659
Score = 56.0 bits (28), Expect = 8e-006
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 767 accccaacgagctcaccggcgccatcgtcggcgggcccgacaagaacgacggcttc 822
|||||||| ||| || |||||||| ||||||||||| |||| |||||||||||||
Sbjct: 224 accccaacctgctgacgggcgccatggtcggcgggccagacaggaacgacggcttc 279
>gb|CD205740.1|CD205740 HS1_18_E08.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_18_E08_A012 3', mRNA sequence
Length = 601
Score = 56.0 bits (28), Expect = 8e-006
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 767 accccaacgagctcaccggcgccatcgtcggcgggcccgacaagaacgacggcttc 822
|||||||| ||| || |||||||| ||||||||||| |||| |||||||||||||
Sbjct: 140 accccaacctgctgacgggcgccatggtcggcgggccagacaggaacgacggcttc 195
>gb|CD220430.1|CD220430 CCC1_67_H06.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_67_H06_A007 3', mRNA sequence
Length = 635
Score = 56.0 bits (28), Expect = 8e-006
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 767 accccaacgagctcaccggcgccatcgtcggcgggcccgacaagaacgacggcttc 822
|||||||| ||| || |||||||| ||||||||||| |||| |||||||||||||
Sbjct: 184 accccaacctgctgacgggcgccatggtcggcgggccagacaggaacgacggcttc 239
>gb|CF071078.1|CF071078 FE1_15_D12.b1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
clone FE1_15_D12_A002 3', mRNA sequence
Length = 707
Score = 56.0 bits (28), Expect = 8e-006
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 767 accccaacgagctcaccggcgccatcgtcggcgggcccgacaagaacgacggcttc 822
|||||||| ||| || |||||||| ||||||||||| |||| |||||||||||||
Sbjct: 247 accccaacctgctgacgggcgccatggtcggcgggccagacaggaacgacggcttc 302
>gb|CX611325.1|CX611325 ANR1_24_B05.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_24_B05_A002 3', mRNA sequence
Length = 705
Score = 56.0 bits (28), Expect = 8e-006
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 767 accccaacgagctcaccggcgccatcgtcggcgggcccgacaagaacgacggcttc 822
|||||||| ||| || |||||||| ||||||||||| |||| |||||||||||||
Sbjct: 245 accccaacctgctgacgggcgccatggtcggcgggccagacaggaacgacggcttc 300
>gb|CX613114.1|CX613114 GABR1_6_G11.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_6_G11_A002 3', mRNA sequence
Length = 683
Score = 56.0 bits (28), Expect = 8e-006
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 767 accccaacgagctcaccggcgccatcgtcggcgggcccgacaagaacgacggcttc 822
|||||||| ||| || |||||||| ||||||||||| |||| |||||||||||||
Sbjct: 243 accccaacctgctgacgggcgccatggtcggcgggccagacaggaacgacggcttc 298
>gb|CX616301.1|CX616301 GABR1_27_D03.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_27_D03_A002 3', mRNA sequence
Length = 605
Score = 56.0 bits (28), Expect = 8e-006
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 767 accccaacgagctcaccggcgccatcgtcggcgggcccgacaagaacgacggcttc 822
|||||||| ||| || |||||||| ||||||||||| |||| |||||||||||||
Sbjct: 145 accccaacctgctgacgggcgccatggtcggcgggccagacaggaacgacggcttc 200
>gb|CX617846.1|CX617846 GABR1_36_D11.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_36_D11_A002 3', mRNA sequence
Length = 720
Score = 56.0 bits (28), Expect = 8e-006
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 767 accccaacgagctcaccggcgccatcgtcggcgggcccgacaagaacgacggcttc 822
|||||||| ||| || |||||||| ||||||||||| |||| |||||||||||||
Sbjct: 259 accccaacctgctgacgggcgccatggtcggcgggccagacaggaacgacggcttc 314
>gb|CX619537.1|CX619537 GABR1_46_D02.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_46_D02_A002 3', mRNA sequence
Length = 708
Score = 56.0 bits (28), Expect = 8e-006
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 767 accccaacgagctcaccggcgccatcgtcggcgggcccgacaagaacgacggcttc 822
|||||||| ||| || |||||||| ||||||||||| |||| |||||||||||||
Sbjct: 248 accccaacctgctgacgggcgccatggtcggcgggccagacaggaacgacggcttc 303
>gb|CW214645.1|CW214645 104_646_11194123_148_37054_070 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11194123, DNA
sequence
Length = 582
Score = 52.0 bits (26), Expect = 1e-004
Identities = 50/58 (86%)
Strand = Plus / Minus
Query: 784 ggcgccatcgtcggcgggcccgacaagaacgacggcttcgtggacaagcgcggcaact 841
|||||| ||||||||||||||||| |||||||||||||| ||| | ||| ||||||
Sbjct: 145 ggcgccgtcgtcggcgggcccgacgctaacgacggcttcgtcgacgaccgctgcaact 88
>gb|CW269732.1|CW269732 104_740_11401967_148_35316_082 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11401967, DNA
sequence
Length = 583
Score = 52.0 bits (26), Expect = 1e-004
Identities = 50/58 (86%)
Strand = Plus / Plus
Query: 784 ggcgccatcgtcggcgggcccgacaagaacgacggcttcgtggacaagcgcggcaact 841
|||||| ||||||||||||||||| |||||||||||||| ||| | ||| ||||||
Sbjct: 244 ggcgccgtcgtcggcgggcccgacgctaacgacggcttcgtcgacgaccgctgcaact 301
>gb|CW269733.1|CW269733 104_740_11401967_148_36230_082 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11401967, DNA
sequence
Length = 666
Score = 52.0 bits (26), Expect = 1e-004
Identities = 50/58 (86%)
Strand = Plus / Plus
Query: 784 ggcgccatcgtcggcgggcccgacaagaacgacggcttcgtggacaagcgcggcaact 841
|||||| ||||||||||||||||| |||||||||||||| ||| | ||| ||||||
Sbjct: 244 ggcgccgtcgtcggcgggcccgacgctaacgacggcttcgtcgacgaccgctgcaact 301
>gb|BZ691299.1|BZ691299 SP__Ba0006A20.r SP__Ba Sorghum propinquum genomic clone
SP__Ba0006A20 3', DNA sequence
Length = 858
Score = 50.1 bits (25), Expect = 5e-004
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 764 ccaaccccaacgagctcaccggcgccatcgtcggcgggcccgacaagaacgac 816
||||||||||| |||| |||||||| |||||||||||||||| || |||||
Sbjct: 201 ccaaccccaacctgctcgacggcgccaccgtcggcgggcccgacgagtacgac 149
>gb|CW126620.1|CW126620 104_507_11112994_148_34731_041 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11112994, DNA
sequence
Length = 639
Score = 50.1 bits (25), Expect = 5e-004
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 764 ccaaccccaacgagctcaccggcgccatcgtcggcgggcccgacaagaacgac 816
||||||||||| |||| |||||||| |||||||||||||||| || |||||
Sbjct: 386 ccaaccccaacctgctcgacggcgccaccgtcggcgggcccgacgagtacgac 334
>gb|CW451552.1|CW451552 fsbb001f191k19f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f191k19, DNA
sequence
Length = 503
Score = 50.1 bits (25), Expect = 5e-004
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 784 ggcgccatcgtcggcgggcccgacaagaacgacggcttcgt 824
|||||| ||||||||||||||||| ||||||||||||||
Sbjct: 57 ggcgccgtcgtcggcgggcccgacgctaacgacggcttcgt 17
>gb|CW784947.1|CW784947 SP__Ba0006A20.r SP__Ba Sorghum propinquum genomic clone
SP__Ba0006A20 3', DNA sequence
Length = 848
Score = 50.1 bits (25), Expect = 5e-004
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 764 ccaaccccaacgagctcaccggcgccatcgtcggcgggcccgacaagaacgac 816
||||||||||| |||| |||||||| |||||||||||||||| || |||||
Sbjct: 207 ccaaccccaacctgctcgacggcgccaccgtcggcgggcccgacgagtacgac 155
>gb|BZ628294.1|BZ628294 ih59b05.b1 WGS-SbicolorF (DH5a methyl filtered) Sorghum bicolor
genomic clone ih59b05 5', DNA sequence
Length = 546
Score = 48.1 bits (24), Expect = 0.002
Identities = 54/64 (84%)
Strand = Plus / Minus
Query: 138 gtgccccttctactgctcctactcgggctacaacgacgagctgctgtgggccgcgacctg 197
|||||||| ||||||| |||||| || ||| | |||||||||||||||| |||| | ||
Sbjct: 523 gtgcccctgctactgcgactactccgggtaccaggacgagctgctgtggggcgcggcgtg 464
Query: 198 gctg 201
||||
Sbjct: 463 gctg 460
>gb|CW176515.1|CW176515 104_589_11158529_116_36582_071 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11158529, DNA
sequence
Length = 496
Score = 48.1 bits (24), Expect = 0.002
Identities = 54/64 (84%)
Strand = Plus / Minus
Query: 138 gtgccccttctactgctcctactcgggctacaacgacgagctgctgtgggccgcgacctg 197
|||||||| ||||||| |||||| || ||| | |||||||||||||||| |||| | ||
Sbjct: 181 gtgcccctgctactgcgactactccgggtaccaggacgagctgctgtggggcgcggcgtg 122
Query: 198 gctg 201
||||
Sbjct: 121 gctg 118
>gb|CW484465.1|CW484465 fsbb001f246j24f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f246j24, DNA
sequence
Length = 369
Score = 48.1 bits (24), Expect = 0.002
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 767 accccaacgagctcaccggcgccatcgtcggcgggcccgacaagaacgacggcttc 822
|||||||| ||| || |||||||| || |||||||| |||| |||||||||||||
Sbjct: 359 accccaacctgctgacgggcgccatggtaggcgggccagacaggaacgacggcttc 304
>gb|CW027032.1|CW027032 104_253_10498282_114_30533 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10498282, DNA
sequence
Length = 698
Score = 46.1 bits (23), Expect = 0.007
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 171 cgacgagctgctgtgggccgcgacctggctg 201
|||||||||||||||||| ||| ||||||||
Sbjct: 577 cgacgagctgctgtgggcggcggcctggctg 607
>gb|CW033978.1|CW033978 104_263_10502273_114_30359 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10502273, DNA
sequence
Length = 588
Score = 46.1 bits (23), Expect = 0.007
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 465 gcagtacgtgaccagcacggcgttcctgctg 495
|||||||||||||||| | ||||||||||||
Sbjct: 271 gcagtacgtgaccagcgccgcgttcctgctg 301
>gb|CW126619.1|CW126619 104_507_11112994_116_34735_041 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11112994, DNA
sequence
Length = 505
Score = 46.1 bits (23), Expect = 0.007
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 171 cgacgagctgctgtgggccgcgacctggctg 201
|||||||||||||||||| ||| ||||||||
Sbjct: 444 cgacgagctgctgtgggcggcggcctggctg 474
>gb|CW164355.1|CW164355 104_572_11151945_116_36461_041 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11151945, DNA
sequence
Length = 766
Score = 46.1 bits (23), Expect = 0.007
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 273 gttcagctgggacctcaagttccccggcgcgcaggtgctgctg 315
||||||||||||| |||| |||| ||||||||| ||||||||
Sbjct: 279 gttcagctgggacaacaagctcccgggcgcgcagctgctgctg 321
>gb|CW230233.1|CW230233 104_671_11207740_116_37270_002 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11207740, DNA
sequence
Length = 712
Score = 46.1 bits (23), Expect = 0.007
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 273 gttcagctgggacctcaagttccccggcgcgcaggtgctgctg 315
||||||||||||| |||| |||| ||||||||| ||||||||
Sbjct: 447 gttcagctgggacaacaagctcccgggcgcgcagctgctgctg 405
>gb|CW230234.1|CW230234 104_671_11207740_148_37266_002 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11207740, DNA
sequence
Length = 650
Score = 46.1 bits (23), Expect = 0.007
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 273 gttcagctgggacctcaagttccccggcgcgcaggtgctgctg 315
||||||||||||| |||| |||| ||||||||| ||||||||
Sbjct: 490 gttcagctgggacaacaagctcccgggcgcgcagctgctgctg 532
>gb|CW459444.1|CW459444 fsbb001f206d04f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f206d04, DNA
sequence
Length = 516
Score = 46.1 bits (23), Expect = 0.007
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 273 gttcagctgggacctcaagttccccggcgcgcaggtgctgctg 315
||||||||||||| |||| |||| ||||||||| ||||||||
Sbjct: 244 gttcagctgggacaacaagctcccgggcgcgcagctgctgctg 202
>gb|CW502518.1|CW502518 fsbb001f298o09k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f298o09, DNA
sequence
Length = 530
Score = 46.1 bits (23), Expect = 0.007
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 465 gcagtacgtgaccagcacggcgttcctgctg 495
|||||||||||||||| | ||||||||||||
Sbjct: 222 gcagtacgtgaccagcgccgcgttcctgctg 192
>gb|CD220536.1|CD220536 CCC1_67_H06.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_67_H06_A007 5', mRNA sequence
Length = 645
Score = 46.1 bits (23), Expect = 0.007
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 273 gttcagctgggacctcaagttccccggcgcgcaggtgctgctg 315
||||||||||||| |||| |||| ||||||||| ||||||||
Sbjct: 151 gttcagctgggacaacaagctcccgggcgcgcagctgctgctg 193
>gb|CN138249.1|CN138249 OX1_62_D07.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_62_D07_A002 5', mRNA sequence
Length = 880
Score = 46.1 bits (23), Expect = 0.007
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 171 cgacgagctgctgtgggccgcgacctggctg 201
|||||||||||||||||| ||| ||||||||
Sbjct: 515 cgacgagctgctgtgggcggcggcctggctg 545
>gb|BZ332122.1|BZ332122 hx25e06.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone hx25e06 5', DNA sequence
Length = 123
Score = 44.1 bits (22), Expect = 0.029
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 465 gcagtacgtgaccagcacggcgttcctgctggtggtgtacgcggac 510
||||| ||| |||||| || ||||||||||| |||||||||||||
Sbjct: 57 gcagttcgtcaccagcgcgtcgttcctgctgacggtgtacgcggac 102
>gb|BZ346525.1|BZ346525 hv20b02.b1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone hv20b02 5', DNA sequence
Length = 406
Score = 44.1 bits (22), Expect = 0.029
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 139 tgccccttctactgctcctactcgggctac 168
||||| ||||||||||||||||| ||||||
Sbjct: 165 tgcccgttctactgctcctactctggctac 136
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 361,293
Number of Sequences: 832831
Number of extensions: 361293
Number of successful extensions: 106927
Number of sequences better than 0.5: 112
Number of HSP's better than 0.5 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 106700
Number of HSP's gapped (non-prelim): 220
length of query: 1189
length of database: 491,359,669
effective HSP length: 20
effective length of query: 1169
effective length of database: 474,703,049
effective search space: 554927864281
effective search space used: 554927864281
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)