BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3754578.2.1
(725 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW044336.1|CW044336 104_280_10508891_114_30268 Sorghum m... 347 9e-094
gb|CW173783.1|CW173783 104_585_11157034_116_36552_037 Sorgh... 347 9e-094
gb|CW486926.1|CW486926 fsbb001f252h17k0 Sorghum methylation... 347 9e-094
gb|BI098036.1|BI098036 IP1_31_C06.g1_A002 Immature pannicle... 347 9e-094
gb|AF466200.2| Sorghum bicolor putative protein kinase gene... 347 9e-094
gb|BF656435.1|BF656435 FM1_45_G12.g2_A003 Floral-Induced Me... 339 2e-091
gb|BG049824.1|BG049824 FM1_66_C11.g1_A003 Floral-Induced Me... 339 2e-091
gb|CW098046.1|CW098046 104_464_11002794_148_34367_073 Sorgh... 313 1e-083
gb|AW285397.1|AW285397 LG1_244_H02.g1_A002 Light Grown 1 (L... 297 7e-079
gb|BG050366.1|BG050366 FM1_53_B07.g1_A003 Floral-Induced Me... 278 7e-073
gb|CW152074.1|CW152074 104_553_11144294_148_36330_061 Sorgh... 218 5e-055
gb|CW152073.1|CW152073 104_553_11144294_116_36325_061 Sorgh... 208 5e-052
gb|CW486925.1|CW486925 fsbb001f252h17f0 Sorghum methylation... 188 5e-046
gb|BG050681.1|BG050681 FM1_71_E01.g1_A003 Floral-Induced Me... 111 9e-023
gb|CN127712.1|CN127712 RHOH1_24_D05.g3_A002 Acid- and alkal... 60 3e-007
gb|CL162307.1|CL162307 104_354_10806316_114_31830_220 Sorgh... 40 0.28
gb|CF072395.1|CF072395 FE1_2_F08.g1_A002 Iron-deficient see... 40 0.28
gb|CN127650.1|CN127650 RHOH1_24_F07.b1_A002 Acid- and alkal... 40 0.28
>gb|CW044336.1|CW044336 104_280_10508891_114_30268 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10508891, DNA
sequence
Length = 554
Score = 347 bits (175), Expect = 9e-094
Identities = 250/275 (90%)
Strand = Plus / Plus
Query: 444 aataccagccaaccgacctaaacctggctggggtatgatgaagagaggacagcgtccagc 503
|||||||||||||| | |||||| ||||||||||||||||||||||||||| |||||||
Sbjct: 138 aataccagccaaccaaactaaacatggctggggtatgatgaagagaggacaaagtccagc 197
Query: 504 aatccttagcttcactctgctatctgtagttacagcaggatgcctgaccacggaccaact 563
||||||| ||||| || |||||||||||||||||||||||| ||||||||||| |||||
Sbjct: 198 aatccttcgcttcgcttagctatctgtagttacagcaggatggctgaccacggatcaact 257
Query: 564 tatcccacaagcacagcatctgcctgggtgactgatagtgggccgtgtagtagttctcca 623
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||
Sbjct: 258 tatcccacaagcacagcatctgcctaggtgactgatagtgggctgtgtagtagttgaaca 317
Query: 624 ggcaaccgtactggcagaacttccagctgtgggaatattggacaggatttgttgaattga 683
|||||| ||||||||||| |||||||||||||||||||||||||| ||||||| |||||
Sbjct: 318 cgcaaccatactggcagaagttccagctgtgggaatattggacaggctttgttgcattga 377
Query: 684 acttctcgacccataggcccatgcttacatcttcc 718
| ||||| |||||||| ||||| ||||||||||||
Sbjct: 378 atttctcaacccatagacccatacttacatcttcc 412
Score = 85.7 bits (43), Expect = 5e-015
Identities = 56/59 (94%), Gaps = 1/59 (1%)
Strand = Plus / Plus
Query: 367 cgcacacccatgcatttagctcatatttgagccagcaacggaggagcaacaacacctac 425
||||||||||| ||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct: 42 cgcacacccattcatttagctcatatt-gagccagcaatggaggagcaacaacacctac 99
Score = 56.0 bits (28), Expect = 5e-006
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 179 aaacaataaccaactggttggggcttcctaaatctt 214
||||| ||||||||||||||| ||||||||||||||
Sbjct: 1 aaacactaaccaactggttggagcttcctaaatctt 36
>gb|CW173783.1|CW173783 104_585_11157034_116_36552_037 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11157034, DNA
sequence
Length = 642
Score = 347 bits (175), Expect = 9e-094
Identities = 250/275 (90%)
Strand = Plus / Plus
Query: 444 aataccagccaaccgacctaaacctggctggggtatgatgaagagaggacagcgtccagc 503
|||||||||||||| | |||||| ||||||||||||||||||||||||||| |||||||
Sbjct: 256 aataccagccaaccaaactaaacatggctggggtatgatgaagagaggacaaagtccagc 315
Query: 504 aatccttagcttcactctgctatctgtagttacagcaggatgcctgaccacggaccaact 563
||||||| ||||| || |||||||||||||||||||||||| ||||||||||| |||||
Sbjct: 316 aatccttcgcttcgcttagctatctgtagttacagcaggatggctgaccacggatcaact 375
Query: 564 tatcccacaagcacagcatctgcctgggtgactgatagtgggccgtgtagtagttctcca 623
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||
Sbjct: 376 tatcccacaagcacagcatctgcctaggtgactgatagtgggctgtgtagtagttgaaca 435
Query: 624 ggcaaccgtactggcagaacttccagctgtgggaatattggacaggatttgttgaattga 683
|||||| ||||||||||| |||||||||||||||||||||||||| ||||||| |||||
Sbjct: 436 cgcaaccatactggcagaagttccagctgtgggaatattggacaggctttgttgcattga 495
Query: 684 acttctcgacccataggcccatgcttacatcttcc 718
| ||||| |||||||| ||||| ||||||||||||
Sbjct: 496 atttctcaacccatagacccatacttacatcttcc 530
Score = 204 bits (103), Expect = 8e-051
Identities = 146/159 (91%), Gaps = 6/159 (3%)
Strand = Plus / Plus
Query: 56 aagaacggagacgtacatctgatctggaatattccctctaatctggcctactacatcaaa 115
||||||| |||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 2 aagaacgaagacgtacatctgatctgga-----cattctaatctggcctactacatcaaa 56
Query: 116 attggatcaattacaagaacaaggacgccaacgccacaattggaccaatacagatcgtgt 175
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct: 57 attggatcaattacaagaacaaggacgccaacgccacagttggaccaataaagatcgtgt 116
Query: 176 aaaaaacaataaccaactggttggggcttcctaaatctt 214
||||||| ||||||||||||||| ||||||||||||||
Sbjct: 117 -aaaaacactaaccaactggttggagcttcctaaatctt 154
Score = 85.7 bits (43), Expect = 5e-015
Identities = 56/59 (94%), Gaps = 1/59 (1%)
Strand = Plus / Plus
Query: 367 cgcacacccatgcatttagctcatatttgagccagcaacggaggagcaacaacacctac 425
||||||||||| ||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct: 160 cgcacacccattcatttagctcatatt-gagccagcaatggaggagcaacaacacctac 217
>gb|CW486926.1|CW486926 fsbb001f252h17k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f252h17, DNA
sequence
Length = 660
Score = 347 bits (175), Expect = 9e-094
Identities = 250/275 (90%)
Strand = Plus / Plus
Query: 444 aataccagccaaccgacctaaacctggctggggtatgatgaagagaggacagcgtccagc 503
|||||||||||||| | |||||| ||||||||||||||||||||||||||| |||||||
Sbjct: 141 aataccagccaaccaaactaaacatggctggggtatgatgaagagaggacaaagtccagc 200
Query: 504 aatccttagcttcactctgctatctgtagttacagcaggatgcctgaccacggaccaact 563
||||||| ||||| || |||||||||||||||||||||||| ||||||||||| |||||
Sbjct: 201 aatccttcgcttcgcttagctatctgtagttacagcaggatggctgaccacggatcaact 260
Query: 564 tatcccacaagcacagcatctgcctgggtgactgatagtgggccgtgtagtagttctcca 623
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||
Sbjct: 261 tatcccacaagcacagcatctgcctaggtgactgatagtgggctgtgtagtagttgaaca 320
Query: 624 ggcaaccgtactggcagaacttccagctgtgggaatattggacaggatttgttgaattga 683
|||||| ||||||||||| |||||||||||||||||||||||||| ||||||| |||||
Sbjct: 321 cgcaaccatactggcagaagttccagctgtgggaatattggacaggctttgttgcattga 380
Query: 684 acttctcgacccataggcccatgcttacatcttcc 718
| ||||| |||||||| ||||| ||||||||||||
Sbjct: 381 atttctcaacccatagacccatacttacatcttcc 415
Score = 85.7 bits (43), Expect = 5e-015
Identities = 56/59 (94%), Gaps = 1/59 (1%)
Strand = Plus / Plus
Query: 367 cgcacacccatgcatttagctcatatttgagccagcaacggaggagcaacaacacctac 425
||||||||||| ||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct: 45 cgcacacccattcatttagctcatatt-gagccagcaatggaggagcaacaacacctac 102
Score = 52.0 bits (26), Expect = 7e-005
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 185 taaccaactggttggggcttcctaaatctt 214
||||||||||||||| ||||||||||||||
Sbjct: 10 taaccaactggttggagcttcctaaatctt 39
>gb|BI098036.1|BI098036 IP1_31_C06.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 676
Score = 347 bits (175), Expect = 9e-094
Identities = 250/275 (90%)
Strand = Plus / Minus
Query: 444 aataccagccaaccgacctaaacctggctggggtatgatgaagagaggacagcgtccagc 503
|||||||||||||| | |||||| ||||||||||||||||||||||||||| |||||||
Sbjct: 374 aataccagccaaccaaactaaacatggctggggtatgatgaagagaggacaaagtccagc 315
Query: 504 aatccttagcttcactctgctatctgtagttacagcaggatgcctgaccacggaccaact 563
||||||| ||||| || |||||||||||||||||||||||| ||||||||||| |||||
Sbjct: 314 aatccttcgcttcgcttagctatctgtagttacagcaggatggctgaccacggatcaact 255
Query: 564 tatcccacaagcacagcatctgcctgggtgactgatagtgggccgtgtagtagttctcca 623
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||
Sbjct: 254 tatcccacaagcacagcatctgcctaggtgactgatagtgggctgtgtagtagttgaaca 195
Query: 624 ggcaaccgtactggcagaacttccagctgtgggaatattggacaggatttgttgaattga 683
|||||| ||||||||||| |||||||||||||||||||||||||| ||||||| |||||
Sbjct: 194 cgcaaccatactggcagaagttccagctgtgggaatattggacaggctttgttgcattga 135
Query: 684 acttctcgacccataggcccatgcttacatcttcc 718
| ||||| |||||||| ||||| ||||||||||||
Sbjct: 134 atttctcaacccatagacccatacttacatcttcc 100
Score = 208 bits (105), Expect = 5e-052
Identities = 170/190 (89%), Gaps = 9/190 (4%)
Strand = Plus / Minus
Query: 28 aaattgtgtctagttattact---atnagaaaagaacggagacgtacatctgatctggaa 84
||||| ||||||||||| ||| || ||| ||||||| ||||||||||||||||||||
Sbjct: 659 aaattttgtctagttataacttgtataagagaagaacgaagacgtacatctgatctgga- 601
Query: 85 tattccctctaatctggcctactacatcaaaattggatcaattacaagaacaaggacgcc 144
| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 ----cattctaatctggcctactacatcaaaattggatcaattacaagaacaaggacgcc 545
Query: 145 aacgccacaattggaccaatacagatcgtgtaaaaaacaataaccaactggttggggctt 204
||||||||| ||||||||||| |||||||||| |||||| ||||||||||||||| ||||
Sbjct: 544 aacgccacagttggaccaataaagatcgtgta-aaaacactaaccaactggttggagctt 486
Query: 205 cctaaatctt 214
||||||||||
Sbjct: 485 cctaaatctt 476
Score = 85.7 bits (43), Expect = 5e-015
Identities = 56/59 (94%), Gaps = 1/59 (1%)
Strand = Plus / Minus
Query: 367 cgcacacccatgcatttagctcatatttgagccagcaacggaggagcaacaacacctac 425
||||||||||| ||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct: 470 cgcacacccattcatttagctcatatt-gagccagcaatggaggagcaacaacacctac 413
>gb|AF466200.2| Sorghum bicolor putative protein kinase gene, partial cds; putative Cf-2,
fertilization-independent endosperm proteins, hypothetical
protein, putative non-LTR retroelement reverse
transcriptase, OCL5 protein, tryptophan synthase
beta-subunit, hypothetical proteins, putative AP
endonuclease, putative RNA polymerase II complex component
SRB7, putative beta-1,3-glucanase, hypothetical protein,
TNP2-like protein, hypothetical protein, putative
phosphate/phosphoenolpyruvate translocator, putative
protein, hypothetical proteins, putative
galactosyltransferase family, hypothetical protein,
putative cytochrome P450 family, putative lipid transfer
protein, putative photoreceptor-interacting protein, and
hypothetical protein genes, complete cds; and hypothetical
protein gene, partial cds
Length = 202197
Score = 347 bits (175), Expect = 9e-094
Identities = 250/275 (90%)
Strand = Plus / Minus
Query: 444 aataccagccaaccgacctaaacctggctggggtatgatgaagagaggacagcgtccagc 503
|||||||||||||| | |||||| ||||||||||||||||||||||||||| |||||||
Sbjct: 171410 aataccagccaaccaaactaaacatggctggggtatgatgaagagaggacaaagtccagc 171351
Query: 504 aatccttagcttcactctgctatctgtagttacagcaggatgcctgaccacggaccaact 563
||||||| ||||| || |||||||||||||||||||||||| ||||||||||| |||||
Sbjct: 171350 aatccttcgcttcgcttagctatctgtagttacagcaggatggctgaccacggatcaact 171291
Query: 564 tatcccacaagcacagcatctgcctgggtgactgatagtgggccgtgtagtagttctcca 623
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||
Sbjct: 171290 tatcccacaagcacagcatctgcctaggtgactgatagtgggctgtgtagtagttgaaca 171231
Query: 624 ggcaaccgtactggcagaacttccagctgtgggaatattggacaggatttgttgaattga 683
|||||| ||||||||||| |||||||||||||||||||||||||| ||||||| |||||
Sbjct: 171230 cgcaaccatactggcagaagttccagctgtgggaatattggacaggctttgttgcattga 171171
Query: 684 acttctcgacccataggcccatgcttacatcttcc 718
| ||||| |||||||| ||||| ||||||||||||
Sbjct: 171170 atttctcaacccatagacccatacttacatcttcc 171136
Score = 208 bits (105), Expect = 5e-052
Identities = 182/206 (88%), Gaps = 9/206 (4%)
Strand = Plus / Minus
Query: 12 ctgcaaagatcagggcaaattgtgtctagttattact---atnagaaaagaacggagacg 68
||||||||| |||| | ||| ||||||||||| ||| || ||| ||||||| |||||
Sbjct: 171711 ctgcaaagagcaggaaacattttgtctagttataacttgtataagagaagaacgaagacg 171652
Query: 69 tacatctgatctggaatattccctctaatctggcctactacatcaaaattggatcaatta 128
||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct: 171651 tacatctgatctgga-----cattctaatctggcctactacatcaaaattggatcaatta 171597
Query: 129 caagaacaaggacgccaacgccacaattggaccaatacagatcgtgtaaaaaacaataac 188
||||||||||||||||||||||||| ||||||||||| |||||||||| |||||| ||||
Sbjct: 171596 caagaacaaggacgccaacgccacagttggaccaataaagatcgtgta-aaaacactaac 171538
Query: 189 caactggttggggcttcctaaatctt 214
||||||||||| ||||||||||||||
Sbjct: 171537 caactggttggagcttcctaaatctt 171512
Score = 85.7 bits (43), Expect = 5e-015
Identities = 56/59 (94%), Gaps = 1/59 (1%)
Strand = Plus / Minus
Query: 367 cgcacacccatgcatttagctcatatttgagccagcaacggaggagcaacaacacctac 425
||||||||||| ||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct: 171506 cgcacacccattcatttagctcatatt-gagccagcaatggaggagcaacaacacctac 171449
>gb|BF656435.1|BF656435 FM1_45_G12.g2_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 633
Score = 339 bits (171), Expect = 2e-091
Identities = 249/275 (90%)
Strand = Plus / Minus
Query: 444 aataccagccaaccgacctaaacctggctggggtatgatgaagagaggacagcgtccagc 503
|||||||||||||| | |||||| ||||||||||||||||||||||||||| ||||||
Sbjct: 361 aataccagccaaccaaactaaacatggctggggtatgatgaagagaggacaaagtccaga 302
Query: 504 aatccttagcttcactctgctatctgtagttacagcaggatgcctgaccacggaccaact 563
||||||| ||||| || |||||||||||||||||||||||| ||||||||||| |||||
Sbjct: 301 aatccttcgcttcgcttagctatctgtagttacagcaggatggctgaccacggatcaact 242
Query: 564 tatcccacaagcacagcatctgcctgggtgactgatagtgggccgtgtagtagttctcca 623
||||||||||||||||||||||||| ||||||||||||||||| || |||||||| ||
Sbjct: 241 tatcccacaagcacagcatctgcctaggtgactgatagtgggctgtatagtagttgaaca 182
Query: 624 ggcaaccgtactggcagaacttccagctgtgggaatattggacaggatttgttgaattga 683
|||||| ||||||||||| |||||||||||||||||||||||||| ||||||| |||||
Sbjct: 181 cgcaaccatactggcagaagttccagctgtgggaatattggacaggctttgttgcattga 122
Query: 684 acttctcgacccataggcccatgcttacatcttcc 718
||||||| |||||||| ||||| ||||||||||||
Sbjct: 121 acttctcaacccatagacccatacttacatcttcc 87
Score = 200 bits (101), Expect = 1e-049
Identities = 120/125 (96%), Gaps = 1/125 (0%)
Strand = Plus / Minus
Query: 92 tctaatctggcctactacatcaaaattggatcaattacaagaacaaggacgccaacgcca 151
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 tctaatctggcctactacatcaaaattggatcaattacaagaacaaggacgccaacgcca 532
Query: 152 caattggaccaatacagatcgtgtaaaaaacaataaccaactggttggggcttcctaaat 211
|| ||||||||||| ||||||||| ||||||| ||||||||||||||| |||||||||||
Sbjct: 531 cagttggaccaataaagatcgtgt-aaaaacactaaccaactggttggagcttcctaaat 473
Query: 212 cttca 216
|||||
Sbjct: 472 cttca 468
Score = 77.8 bits (39), Expect = 1e-012
Identities = 58/63 (92%), Gaps = 1/63 (1%)
Strand = Plus / Minus
Query: 363 ctaccgcacacccatgcatttagctcatatttgagccagcaacggaggagcaacaacacc 422
|||||||||| |||| ||||||||||||||| |||||||| | |||||||||||||||||
Sbjct: 461 ctaccgcacatccattcatttagctcatatt-gagccagccatggaggagcaacaacacc 403
Query: 423 tac 425
|||
Sbjct: 402 tac 400
>gb|BG049824.1|BG049824 FM1_66_C11.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 618
Score = 339 bits (171), Expect = 2e-091
Identities = 249/275 (90%)
Strand = Plus / Minus
Query: 444 aataccagccaaccgacctaaacctggctggggtatgatgaagagaggacagcgtccagc 503
|||||||||||||| | |||||| ||||||||||||||||||||||||||| ||||||
Sbjct: 347 aataccagccaaccaaactaaacatggctggggtatgatgaagagaggacaaagtccaga 288
Query: 504 aatccttagcttcactctgctatctgtagttacagcaggatgcctgaccacggaccaact 563
||||||| ||||| || |||||||||||||||||||||||| ||||||||||| |||||
Sbjct: 287 aatccttcgcttcgcttagctatctgtagttacagcaggatggctgaccacggatcaact 228
Query: 564 tatcccacaagcacagcatctgcctgggtgactgatagtgggccgtgtagtagttctcca 623
||||||||||||||||||||||||| ||||||||||||||||| || |||||||| ||
Sbjct: 227 tatcccacaagcacagcatctgcctaggtgactgatagtgggctgtatagtagttgaaca 168
Query: 624 ggcaaccgtactggcagaacttccagctgtgggaatattggacaggatttgttgaattga 683
|||||| ||||||||||| |||||||||||||||||||||||||| ||||||| |||||
Sbjct: 167 cgcaaccatactggcagaagttccagctgtgggaatattggacaggctttgttgcattga 108
Query: 684 acttctcgacccataggcccatgcttacatcttcc 718
||||||| |||||||| ||||| ||||||||||||
Sbjct: 107 acttctcaacccatagacccatacttacatcttcc 73
Score = 200 bits (101), Expect = 1e-049
Identities = 120/125 (96%), Gaps = 1/125 (0%)
Strand = Plus / Minus
Query: 92 tctaatctggcctactacatcaaaattggatcaattacaagaacaaggacgccaacgcca 151
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 tctaatctggcctactacatcaaaattggatcaattacaagaacaaggacgccaacgcca 518
Query: 152 caattggaccaatacagatcgtgtaaaaaacaataaccaactggttggggcttcctaaat 211
|| ||||||||||| |||||||||| |||||| ||||||||||||||| |||||||||||
Sbjct: 517 cagttggaccaataaagatcgtgta-aaaacactaaccaactggttggagcttcctaaat 459
Query: 212 cttca 216
|||||
Sbjct: 458 cttca 454
Score = 85.7 bits (43), Expect = 5e-015
Identities = 59/63 (93%), Gaps = 1/63 (1%)
Strand = Plus / Minus
Query: 363 ctaccgcacacccatgcatttagctcatatttgagccagcaacggaggagcaacaacacc 422
|||||||||| |||| ||||||||||||||| |||||||||| |||||||||||||||||
Sbjct: 447 ctaccgcacatccattcatttagctcatatt-gagccagcaatggaggagcaacaacacc 389
Query: 423 tac 425
|||
Sbjct: 388 tac 386
>gb|CW098046.1|CW098046 104_464_11002794_148_34367_073 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11002794, DNA
sequence
Length = 660
Score = 313 bits (158), Expect = 1e-083
Identities = 224/246 (91%)
Strand = Plus / Plus
Query: 473 ggggtatgatgaagagaggacagcgtccagcaatccttagcttcactctgctatctgtag 532
|||||||||||||||||||||| |||||||||||||| ||||| || |||||||||||
Sbjct: 1 ggggtatgatgaagagaggacaaagtccagcaatccttcgcttcgcttagctatctgtag 60
Query: 533 ttacagcaggatgcctgaccacggaccaacttatcccacaagcacagcatctgcctgggt 592
||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct: 61 ttacagcaggatggctgaccacggatcaacttatcccacaagcacagcatctgcctaggt 120
Query: 593 gactgatagtgggccgtgtagtagttctccaggcaaccgtactggcagaacttccagctg 652
|||||||||||||| ||||||||||| || |||||| ||||||||||| |||||||||
Sbjct: 121 gactgatagtgggctgtgtagtagttgaacacgcaaccatactggcagaagttccagctg 180
Query: 653 tgggaatattggacaggatttgttgaattgaacttctcgacccataggcccatgcttaca 712
||||||||||||||||| ||||||| |||||| ||||| |||||||| ||||| ||||||
Sbjct: 181 tgggaatattggacaggctttgttgcattgaatttctcaacccatagacccatacttaca 240
Query: 713 tcttcc 718
||||||
Sbjct: 241 tcttcc 246
>gb|AW285397.1|AW285397 LG1_244_H02.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 522
Score = 297 bits (150), Expect = 7e-079
Identities = 207/226 (91%)
Strand = Plus / Minus
Query: 444 aataccagccaaccgacctaaacctggctggggtatgatgaagagaggacagcgtccagc 503
|||||||||||||| | |||||| ||||||||||||||||||||||||||| |||||||
Sbjct: 228 aataccagccaaccaaactaaacatggctggggtatgatgaagagaggacaaagtccagc 169
Query: 504 aatccttagcttcactctgctatctgtagttacagcaggatgcctgaccacggaccaact 563
||||||| ||||| || |||||||||||||||||||||||| ||||||||||| |||||
Sbjct: 168 aatccttcgcttcgcttagctatctgtagttacagcaggatggctgaccacggatcaact 109
Query: 564 tatcccacaagcacagcatctgcctgggtgactgatagtgggccgtgtagtagttctcca 623
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||
Sbjct: 108 tatcccacaagcacagcatctgcctaggtgactgatagtgggctgtgtagtagttgaaca 49
Query: 624 ggcaaccgtactggcagaacttccagctgtgggaatattggacagg 669
|||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct: 48 cgcaaccatactggcagaagttccagctgtgggaatattggacagg 3
Score = 206 bits (104), Expect = 2e-051
Identities = 152/167 (91%), Gaps = 6/167 (3%)
Strand = Plus / Minus
Query: 48 tatnagaaaagaacggagacgtacatctgatctggaatattccctctaatctggcctact 107
||| ||| ||||||| |||||||||||||||||||| | ||||||||||||||||
Sbjct: 490 tataagagaagaacgaagacgtacatctgatctgga-----cattctaatctggcctact 436
Query: 108 acatcaaaattggatcaattacaagaacaaggacgccaacgccacaattggaccaataca 167
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct: 435 acatcaaaattggatcaattacaagaacaaggacgccaacgccacagttggaccaataaa 376
Query: 168 gatcgtgtaaaaaacaataaccaactggttggggcttcctaaatctt 214
|||||||| ||||||| ||||||||||||||| ||||||||||||||
Sbjct: 375 gatcgtgt-aaaaacactaaccaactggttggagcttcctaaatctt 330
Score = 85.7 bits (43), Expect = 5e-015
Identities = 56/59 (94%), Gaps = 1/59 (1%)
Strand = Plus / Minus
Query: 367 cgcacacccatgcatttagctcatatttgagccagcaacggaggagcaacaacacctac 425
||||||||||| ||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct: 324 cgcacacccattcatttagctcatatt-gagccagcaatggaggagcaacaacacctac 267
>gb|BG050366.1|BG050366 FM1_53_B07.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 366
Score = 278 bits (140), Expect = 7e-073
Identities = 203/224 (90%)
Strand = Plus / Minus
Query: 444 aataccagccaaccgacctaaacctggctggggtatgatgaagagaggacagcgtccagc 503
|||||||||||||| | |||||| ||||||||||||||||||||||||||| ||||||
Sbjct: 226 aataccagccaaccaaactaaacatggctggggtatgatgaagagaggacaaagtccaga 167
Query: 504 aatccttagcttcactctgctatctgtagttacagcaggatgcctgaccacggaccaact 563
||||||| ||||| || |||||||||||||||||||||||| ||||||||||| |||||
Sbjct: 166 aatccttcgcttcgcttagctatctgtagttacagcaggatggctgaccacggatcaact 107
Query: 564 tatcccacaagcacagcatctgcctgggtgactgatagtgggccgtgtagtagttctcca 623
||||||||||||||||||||||||| ||||||||||||||||| || |||||||| ||
Sbjct: 106 tatcccacaagcacagcatctgcctaggtgactgatagtgggctgtatagtagttgaaca 47
Query: 624 ggcaaccgtactggcagaacttccagctgtgggaatattggaca 667
|||||| ||||||||||| ||||||||||||||||||||||||
Sbjct: 46 cgcaaccatactggcagaagttccagctgtgggaatattggaca 3
Score = 77.8 bits (39), Expect = 1e-012
Identities = 58/63 (92%), Gaps = 1/63 (1%)
Strand = Plus / Minus
Query: 363 ctaccgcacacccatgcatttagctcatatttgagccagcaacggaggagcaacaacacc 422
|||||||||| |||| ||||||||||||||| |||||||| | |||||||||||||||||
Sbjct: 326 ctaccgcacatccattcatttagctcatatt-gagccagccatggaggagcaacaacacc 268
Query: 423 tac 425
|||
Sbjct: 267 tac 265
Score = 48.1 bits (24), Expect = 0.001
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 185 taaccaactggttggggcttcctaaatcttca 216
||||||||||||||| |||| |||||||||||
Sbjct: 364 taaccaactggttggagctttctaaatcttca 333
>gb|CW152074.1|CW152074 104_553_11144294_148_36330_061 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11144294, DNA
sequence
Length = 664
Score = 218 bits (110), Expect = 5e-055
Identities = 146/158 (92%)
Strand = Plus / Minus
Query: 444 aataccagccaaccgacctaaacctggctggggtatgatgaagagaggacagcgtccagc 503
|||||||||||||| | |||||| ||||||||||||||||||||||||||| |||||||
Sbjct: 158 aataccagccaaccaaactaaacatggctggggtatgatgaagagaggacaaagtccagc 99
Query: 504 aatccttagcttcactctgctatctgtagttacagcaggatgcctgaccacggaccaact 563
||||||| ||||| || |||||||||||||||||||||||| ||||||||||| |||||
Sbjct: 98 aatccttcgcttcgcttagctatctgtagttacagcaggatggctgaccacggatcaact 39
Query: 564 tatcccacaagcacagcatctgcctgggtgactgatag 601
||||||||||||||||||||||||| ||||||||||||
Sbjct: 38 tatcccacaagcacagcatctgcctaggtgactgatag 1
Score = 208 bits (105), Expect = 5e-052
Identities = 182/206 (88%), Gaps = 9/206 (4%)
Strand = Plus / Minus
Query: 12 ctgcaaagatcagggcaaattgtgtctagttattact---atnagaaaagaacggagacg 68
||||||||| |||| | ||| ||||||||||| ||| || ||| ||||||| |||||
Sbjct: 459 ctgcaaagagcaggaaacattttgtctagttataacttgtataagagaagaacgaagacg 400
Query: 69 tacatctgatctggaatattccctctaatctggcctactacatcaaaattggatcaatta 128
||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct: 399 tacatctgatctgga-----cattctaatctggcctactacatcaaaattggatcaatta 345
Query: 129 caagaacaaggacgccaacgccacaattggaccaatacagatcgtgtaaaaaacaataac 188
||||||||||||||||||||||||| ||||||||||| |||||||||| |||||| ||||
Sbjct: 344 caagaacaaggacgccaacgccacagttggaccaataaagatcgtgta-aaaacactaac 286
Query: 189 caactggttggggcttcctaaatctt 214
||||||||||| ||||||||||||||
Sbjct: 285 caactggttggagcttcctaaatctt 260
Score = 85.7 bits (43), Expect = 5e-015
Identities = 56/59 (94%), Gaps = 1/59 (1%)
Strand = Plus / Minus
Query: 367 cgcacacccatgcatttagctcatatttgagccagcaacggaggagcaacaacacctac 425
||||||||||| ||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct: 254 cgcacacccattcatttagctcatatt-gagccagcaatggaggagcaacaacacctac 197
>gb|CW152073.1|CW152073 104_553_11144294_116_36325_061 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11144294, DNA
sequence
Length = 698
Score = 208 bits (105), Expect = 5e-052
Identities = 182/206 (88%), Gaps = 9/206 (4%)
Strand = Plus / Plus
Query: 12 ctgcaaagatcagggcaaattgtgtctagttattact---atnagaaaagaacggagacg 68
||||||||| |||| | ||| ||||||||||| ||| || ||| ||||||| |||||
Sbjct: 292 ctgcaaagagcaggaaacattttgtctagttataacttgtataagagaagaacgaagacg 351
Query: 69 tacatctgatctggaatattccctctaatctggcctactacatcaaaattggatcaatta 128
||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct: 352 tacatctgatctgga-----cattctaatctggcctactacatcaaaattggatcaatta 406
Query: 129 caagaacaaggacgccaacgccacaattggaccaatacagatcgtgtaaaaaacaataac 188
||||||||||||||||||||||||| ||||||||||| ||||||||| ||||||| ||||
Sbjct: 407 caagaacaaggacgccaacgccacagttggaccaataaagatcgtgt-aaaaacactaac 465
Query: 189 caactggttggggcttcctaaatctt 214
||||||||||| ||||||||||||||
Sbjct: 466 caactggttggagcttcctaaatctt 491
Score = 131 bits (66), Expect = 1e-028
Identities = 93/102 (91%)
Strand = Plus / Plus
Query: 444 aataccagccaaccgacctaaacctggctggggtatgatgaagagaggacagcgtccagc 503
|||||||||||||| | |||||| ||||||||||||||||||||||||||| |||||||
Sbjct: 593 aataccagccaaccaaactaaacatggctggggtatgatgaagagaggacaaagtccagc 652
Query: 504 aatccttagcttcactctgctatctgtagttacagcaggatg 545
||||||| ||||| || ||||||||||||||||||||||||
Sbjct: 653 aatccttcgcttcgcttagctatctgtagttacagcaggatg 694
Score = 85.7 bits (43), Expect = 5e-015
Identities = 56/59 (94%), Gaps = 1/59 (1%)
Strand = Plus / Plus
Query: 367 cgcacacccatgcatttagctcatatttgagccagcaacggaggagcaacaacacctac 425
||||||||||| ||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct: 497 cgcacacccattcatttagctcatatt-gagccagcaatggaggagcaacaacacctac 554
>gb|CW486925.1|CW486925 fsbb001f252h17f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f252h17, DNA
sequence
Length = 703
Score = 188 bits (95), Expect = 5e-046
Identities = 137/151 (90%)
Strand = Plus / Minus
Query: 568 ccacaagcacagcatctgcctgggtgactgatagtgggccgtgtagtagttctccaggca 627
||||||||||||||||||||| ||||||||||||||||| ||||||||||| || |||
Sbjct: 703 ccacaagcacagcatctgcctaggtgactgatagtgggctgtgtagtagttgaacacgca 644
Query: 628 accgtactggcagaacttccagctgtgggaatattggacaggatttgttgaattgaactt 687
||| ||||||||||| |||||||||||||||||||||||||| ||||||| |||||| ||
Sbjct: 643 accatactggcagaagttccagctgtgggaatattggacaggctttgttgcattgaattt 584
Query: 688 ctcgacccataggcccatgcttacatcttcc 718
||| |||||||| ||||| ||||||||||||
Sbjct: 583 ctcaacccatagacccatacttacatcttcc 553
>gb|BG050681.1|BG050681 FM1_71_E01.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 163
Score = 111 bits (56), Expect = 9e-023
Identities = 75/80 (93%), Gaps = 1/80 (1%)
Strand = Plus / Minus
Query: 137 aggacgccaacgccacaattggaccaatacagatcgtgtaaaaaacaataaccaactggt 196
||||||||||||||||| ||||||||||| ||||||||| ||||||| ||||||||||||
Sbjct: 155 aggacgccaacgccacagttggaccaataaagatcgtgt-aaaaacactaaccaactggt 97
Query: 197 tggggcttcctaaatcttca 216
||| ||||||||||||||||
Sbjct: 96 tggagcttcctaaatcttca 77
Score = 69.9 bits (35), Expect = 3e-010
Identities = 57/63 (90%), Gaps = 1/63 (1%)
Strand = Plus / Minus
Query: 363 ctaccgcacacccatgcatttagctcatatttgagccagcaacggaggagcaacaacacc 422
|||||||||| ||| ||||||||||||||| |||||||| | |||||||||||||||||
Sbjct: 70 ctaccgcacatacattcatttagctcatatt-gagccagccatggaggagcaacaacacc 12
Query: 423 tac 425
|||
Sbjct: 11 tac 9
>gb|CN127712.1|CN127712 RHOH1_24_D05.g3_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_24_D05_A002 5', mRNA sequence
Length = 844
Score = 60.0 bits (30), Expect = 3e-007
Identities = 69/82 (84%)
Strand = Plus / Minus
Query: 574 gcacagcatctgcctgggtgactgatagtgggccgtgtagtagttctccaggcaaccgta 633
||||||||| |||| ||| ||||| ||||| ||||| |||||| |||| ||| ||| |
Sbjct: 520 gcacagcatgtgccagggggactggtagtgcgccgtcaagtagtaatccacgcagccgaa 461
Query: 634 ctggcagaacttccagctgtgg 655
|||||||||| |||||||||||
Sbjct: 460 ctggcagaacctccagctgtgg 439
>gb|CL162307.1|CL162307 104_354_10806316_114_31830_220 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10806316, DNA
sequence
Length = 754
Score = 40.1 bits (20), Expect = 0.28
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 165 acagatcgtgtaaaaaacaa 184
||||||||||||||||||||
Sbjct: 193 acagatcgtgtaaaaaacaa 174
>gb|CF072395.1|CF072395 FE1_2_F08.g1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
clone FE1_2_F08_A002 5', mRNA sequence
Length = 658
Score = 40.1 bits (20), Expect = 0.28
Identities = 35/40 (87%)
Strand = Plus / Plus
Query: 679 attgaacttctcgacccataggcccatgcttacatcttcc 718
|||||||||||| ||||| | |||||| || |||||||||
Sbjct: 528 attgaacttctcaacccacatgcccatactaacatcttcc 567
>gb|CN127650.1|CN127650 RHOH1_24_F07.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_24_F07_A002 3', mRNA sequence
Length = 756
Score = 40.1 bits (20), Expect = 0.28
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 165 acagatcgtgtaaaaaacaa 184
||||||||||||||||||||
Sbjct: 700 acagatcgtgtaaaaaacaa 681
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 168,194
Number of Sequences: 832831
Number of extensions: 168194
Number of successful extensions: 45769
Number of sequences better than 0.5: 18
Number of HSP's better than 0.5 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 45675
Number of HSP's gapped (non-prelim): 69
length of query: 725
length of database: 491,359,669
effective HSP length: 20
effective length of query: 705
effective length of database: 474,703,049
effective search space: 334665649545
effective search space used: 334665649545
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)