BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3748535.2.1
(619 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BZ781676.1|BZ781676 ii30h03.b1 WGS-SbicolorF (DH5a methy... 145 6e-033
gb|BZ781677.1|BZ781677 ii30h03.b7 WGS-SbicolorF (DH5a methy... 145 6e-033
gb|CW108787.1|CW108787 104_480_11097710_148_34498_053 Sorgh... 145 6e-033
gb|CW257775.1|CW257775 104_723_11227518_116_35161_025 Sorgh... 145 6e-033
gb|CW479900.1|CW479900 fsbb001f238k14f0 Sorghum methylation... 145 6e-033
gb|CW479901.1|CW479901 fsbb001f238k14k0 Sorghum methylation... 145 6e-033
gb|CW047335.1|CW047335 104_285_10512671_114_30216 Sorghum m... 137 1e-030
gb|CW047336.1|CW047336 104_285_10512671_114_30218 Sorghum m... 137 1e-030
gb|CW144784.1|CW144784 104_537_11138124_148_34969_046 Sorgh... 137 1e-030
gb|CW438564.1|CW438564 fsbb001f156e04k0 Sorghum methylation... 113 2e-023
gb|CW321502.1|CW321502 104_814_11475589_116_35934_049 Sorgh... 107 1e-021
gb|CL178987.1|CL178987 104_387_10894976_148_31905_272 Sorgh... 100 3e-019
gb|CW144783.1|CW144783 104_537_11138124_116_34973_046 Sorgh... 100 3e-019
gb|CW368958.1|CW368958 fsbb001f043c10k0 Sorghum methylation... 100 3e-019
gb|CW025326.1|CW025326 104_226_10488128_114_30494 Sorghum m... 92 7e-017
gb|CW483981.1|CW483981 fsbb001f245o03k0 Sorghum methylation... 84 2e-014
gb|CL160147.1|CL160147 104_350_10804771_114_31822_211 Sorgh... 76 4e-012
gb|CL160148.1|CL160148 104_350_10804771_116_31823_211 Sorgh... 76 4e-012
gb|BF318031.1|BF318031 OV1_10_H12.b1_A002 Ovary 1 (OV1) Sor... 76 4e-012
gb|BI076120.1|BI076120 IP1_25_A09.b1_A002 Immature pannicle... 72 7e-011
gb|CW108786.1|CW108786 104_480_11097710_116_34494_053 Sorgh... 70 3e-010
gb|CW025249.1|CW025249 104_226_10488078_116_30523 Sorghum m... 62 6e-008
gb|CW321503.1|CW321503 104_814_11475589_148_35938_049 Sorgh... 62 6e-008
gb|CW188580.1|CW188580 104_608_11173117_116_36729_055 Sorgh... 56 4e-006
gb|BG464985.1|BG464985 EM1_34_F10.b1_A002 Embryo 1 (EM1) So... 56 4e-006
gb|BI074628.1|BI074628 IP1_13_B09.b1_A002 Immature pannicle... 56 4e-006
gb|CX611601.1|CX611601 ANR1_25_D05.g1_A002 Anaerobic roots ... 56 4e-006
gb|CX617235.1|CX617235 GABR1_32_C02.g1_A002 GA- or brassino... 56 4e-006
gb|CL178986.1|CL178986 104_387_10894976_116_31906_272 Sorgh... 54 2e-005
gb|CW196810.1|CW196810 104_621_11181361_116_36817_015 Sorgh... 54 2e-005
gb|CW196811.1|CW196811 104_621_11181361_148_36818_015 Sorgh... 54 2e-005
gb|CW368957.1|CW368957 fsbb001f043c10f0 Sorghum methylation... 54 2e-005
gb|CW483980.1|CW483980 fsbb001f245o03f0 Sorghum methylation... 54 2e-005
gb|CF486612.1|CF486612 POL1_38_E10.g1_A002 Pollen Sorghum b... 50 2e-004
gb|CW188581.1|CW188581 104_608_11173117_148_36730_055 Sorgh... 46 0.004
gb|CW391886.1|CW391886 fsbb001f078d24f0 Sorghum methylation... 46 0.004
gb|DN551953.1|DN551953 pSPR-RT-MR-H2_F07_S199 pSPR Sorghum ... 40 0.24
>gb|BZ781676.1|BZ781676 ii30h03.b1 WGS-SbicolorF (DH5a methyl filtered) Sorghum bicolor
genomic clone ii30h03, DNA sequence
Length = 707
Score = 145 bits (73), Expect = 6e-033
Identities = 82/85 (96%)
Strand = Plus / Plus
Query: 495 agggggacttcatggacatgccaatatctgataacacctttgatgcggcctatgcaatac 554
|||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 454 agggggacttcatgaacatgccaatagctgataacacctttgatgcggcctatgcaatag 513
Query: 555 aggctacatgtcatgcaccagatgc 579
|||||||||||||||||||||||||
Sbjct: 514 aggctacatgtcatgcaccagatgc 538
Score = 89.7 bits (45), Expect = 3e-016
Identities = 51/53 (96%)
Strand = Plus / Plus
Query: 341 ttggatgtgggatgtggaattgggggacctttaatagaaatcgccagattcag 393
||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct: 18 ttggatgtgggatgtggaattgggggacccttaatagaaattgccagattcag 70
Score = 77.8 bits (39), Expect = 1e-012
Identities = 48/51 (94%)
Strand = Plus / Plus
Query: 447 aggagctcatttcttcagcaggtttgagcgagcaatgctgcttcttgaagg 497
||||||| |||| ||||||||||||||| ||||||||||||||||||||||
Sbjct: 312 aggagctaattttttcagcaggtttgagtgagcaatgctgcttcttgaagg 362
Score = 69.9 bits (35), Expect = 3e-010
Identities = 38/39 (97%)
Strand = Plus / Plus
Query: 581 caaggcgtctatagtgaggtctaccgtgtgctgaaacct 619
||||||||||| |||||||||||||||||||||||||||
Sbjct: 652 caaggcgtctacagtgaggtctaccgtgtgctgaaacct 690
Score = 61.9 bits (31), Expect = 6e-008
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 403 gataactggactgaacaacaatgactaccacatctcaaggggcaagg 449
|||||||||| ||||| |||| |||||||| ||||||||||||||||
Sbjct: 185 gataactggattgaactacaacgactaccagatctcaaggggcaagg 231
>gb|BZ781677.1|BZ781677 ii30h03.b7 WGS-SbicolorF (DH5a methyl filtered) Sorghum bicolor
genomic clone ii30h03, DNA sequence
Length = 674
Score = 145 bits (73), Expect = 6e-033
Identities = 82/85 (96%)
Strand = Plus / Plus
Query: 495 agggggacttcatggacatgccaatatctgataacacctttgatgcggcctatgcaatac 554
|||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 438 agggggacttcatgaacatgccaatagctgataacacctttgatgcggcctatgcaatag 497
Query: 555 aggctacatgtcatgcaccagatgc 579
|||||||||||||||||||||||||
Sbjct: 498 aggctacatgtcatgcaccagatgc 522
Score = 89.7 bits (45), Expect = 3e-016
Identities = 51/53 (96%)
Strand = Plus / Plus
Query: 341 ttggatgtgggatgtggaattgggggacctttaatagaaatcgccagattcag 393
||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct: 2 ttggatgtgggatgtggaattgggggacccttaatagaaattgccagattcag 54
Score = 77.8 bits (39), Expect = 1e-012
Identities = 48/51 (94%)
Strand = Plus / Plus
Query: 447 aggagctcatttcttcagcaggtttgagcgagcaatgctgcttcttgaagg 497
||||||| |||| ||||||||||||||| ||||||||||||||||||||||
Sbjct: 296 aggagctaattttttcagcaggtttgagtgagcaatgctgcttcttgaagg 346
Score = 69.9 bits (35), Expect = 3e-010
Identities = 38/39 (97%)
Strand = Plus / Plus
Query: 581 caaggcgtctatagtgaggtctaccgtgtgctgaaacct 619
||||||||||| |||||||||||||||||||||||||||
Sbjct: 636 caaggcgtctacagtgaggtctaccgtgtgctgaaacct 674
Score = 61.9 bits (31), Expect = 6e-008
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 403 gataactggactgaacaacaatgactaccacatctcaaggggcaagg 449
|||||||||| ||||| |||| |||||||| ||||||||||||||||
Sbjct: 169 gataactggattgaactacaacgactaccagatctcaaggggcaagg 215
>gb|CW108787.1|CW108787 104_480_11097710_148_34498_053 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11097710, DNA
sequence
Length = 626
Score = 145 bits (73), Expect = 6e-033
Identities = 82/85 (96%)
Strand = Plus / Plus
Query: 495 agggggacttcatggacatgccaatatctgataacacctttgatgcggcctatgcaatac 554
|||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 79 agggggacttcatgaacatgccaatagctgataacacctttgatgcggcctatgcaatag 138
Query: 555 aggctacatgtcatgcaccagatgc 579
|||||||||||||||||||||||||
Sbjct: 139 aggctacatgtcatgcaccagatgc 163
Score = 69.9 bits (35), Expect = 3e-010
Identities = 38/39 (97%)
Strand = Plus / Plus
Query: 581 caaggcgtctatagtgaggtctaccgtgtgctgaaacct 619
||||||||||| |||||||||||||||||||||||||||
Sbjct: 277 caaggcgtctacagtgaggtctaccgtgtgctgaaacct 315
>gb|CW257775.1|CW257775 104_723_11227518_116_35161_025 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11227518, DNA
sequence
Length = 724
Score = 145 bits (73), Expect = 6e-033
Identities = 82/85 (96%)
Strand = Plus / Plus
Query: 495 agggggacttcatggacatgccaatatctgataacacctttgatgcggcctatgcaatac 554
|||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 305 agggggacttcatgaacatgccaatagctgataacacctttgatgcggcctatgcaatag 364
Query: 555 aggctacatgtcatgcaccagatgc 579
|||||||||||||||||||||||||
Sbjct: 365 aggctacatgtcatgcaccagatgc 389
Score = 77.8 bits (39), Expect = 1e-012
Identities = 48/51 (94%)
Strand = Plus / Plus
Query: 447 aggagctcatttcttcagcaggtttgagcgagcaatgctgcttcttgaagg 497
||||||| |||| ||||||||||||||| ||||||||||||||||||||||
Sbjct: 163 aggagctaattttttcagcaggtttgagtgagcaatgctgcttcttgaagg 213
Score = 69.9 bits (35), Expect = 3e-010
Identities = 38/39 (97%)
Strand = Plus / Plus
Query: 581 caaggcgtctatagtgaggtctaccgtgtgctgaaacct 619
||||||||||| |||||||||||||||||||||||||||
Sbjct: 503 caaggcgtctacagtgaggtctaccgtgtgctgaaacct 541
Score = 61.9 bits (31), Expect = 6e-008
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 403 gataactggactgaacaacaatgactaccacatctcaaggggcaagg 449
|||||||||| ||||| |||| |||||||| ||||||||||||||||
Sbjct: 36 gataactggattgaactacaacgactaccagatctcaaggggcaagg 82
>gb|CW479900.1|CW479900 fsbb001f238k14f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f238k14, DNA
sequence
Length = 779
Score = 145 bits (73), Expect = 6e-033
Identities = 82/85 (96%)
Strand = Plus / Minus
Query: 495 agggggacttcatggacatgccaatatctgataacacctttgatgcggcctatgcaatac 554
|||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 410 agggggacttcatgaacatgccaatagctgataacacctttgatgcggcctatgcaatag 351
Query: 555 aggctacatgtcatgcaccagatgc 579
|||||||||||||||||||||||||
Sbjct: 350 aggctacatgtcatgcaccagatgc 326
Score = 77.8 bits (39), Expect = 1e-012
Identities = 48/51 (94%)
Strand = Plus / Minus
Query: 447 aggagctcatttcttcagcaggtttgagcgagcaatgctgcttcttgaagg 497
||||||| |||| ||||||||||||||| ||||||||||||||||||||||
Sbjct: 552 aggagctaattttttcagcaggtttgagtgagcaatgctgcttcttgaagg 502
Score = 69.9 bits (35), Expect = 3e-010
Identities = 38/39 (97%)
Strand = Plus / Minus
Query: 581 caaggcgtctatagtgaggtctaccgtgtgctgaaacct 619
||||||||||| |||||||||||||||||||||||||||
Sbjct: 212 caaggcgtctacagtgaggtctaccgtgtgctgaaacct 174
Score = 46.1 bits (23), Expect = 0.004
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 403 gataactggactgaacaacaatgactaccacatctcaaggggcaagg 449
|||| ||||| ||||| ||| |||||||| ||||||||||||||||
Sbjct: 680 gatacctggattgaactccaacgactaccagatctcaaggggcaagg 634
>gb|CW479901.1|CW479901 fsbb001f238k14k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f238k14, DNA
sequence
Length = 713
Score = 145 bits (73), Expect = 6e-033
Identities = 82/85 (96%)
Strand = Plus / Plus
Query: 495 agggggacttcatggacatgccaatatctgataacacctttgatgcggcctatgcaatac 554
|||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 572 agggggacttcatgaacatgccaatagctgataacacctttgatgcggcctatgcaatag 631
Query: 555 aggctacatgtcatgcaccagatgc 579
|||||||||||||||||||||||||
Sbjct: 632 aggctacatgtcatgcaccagatgc 656
Score = 91.7 bits (46), Expect = 7e-017
Identities = 55/58 (94%)
Strand = Plus / Plus
Query: 336 aggttttggatgtgggatgtggaattgggggacctttaatagaaatcgccagattcag 393
|||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct: 131 aggtcttggatgtgggatgtggaattgggggacccttaatagaaattgccagattcag 188
Score = 77.8 bits (39), Expect = 1e-012
Identities = 48/51 (94%)
Strand = Plus / Plus
Query: 447 aggagctcatttcttcagcaggtttgagcgagcaatgctgcttcttgaagg 497
||||||| |||| ||||||||||||||| ||||||||||||||||||||||
Sbjct: 430 aggagctaattttttcagcaggtttgagtgagcaatgctgcttcttgaagg 480
Score = 61.9 bits (31), Expect = 6e-008
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 403 gataactggactgaacaacaatgactaccacatctcaaggggcaagg 449
|||||||||| ||||| |||| |||||||| ||||||||||||||||
Sbjct: 303 gataactggattgaactacaacgactaccagatctcaaggggcaagg 349
>gb|CW047335.1|CW047335 104_285_10512671_114_30216 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10512671, DNA
sequence
Length = 664
Score = 137 bits (69), Expect = 1e-030
Identities = 84/89 (94%)
Strand = Plus / Minus
Query: 252 gatatccgggtgagacttcccgtgaagccattaagcggcaccagcattttttggcactac 311
|||||||||||||||||||||||||||||||||||||||| |||||||| | |||||||
Sbjct: 446 gatatccgggtgagacttcccgtgaagccattaagcggcatgagcattttattgcactac 387
Query: 312 aattggggctcaagaagggtatgaaggtt 340
||||||||||||||||||| |||||||||
Sbjct: 386 aattggggctcaagaaggggatgaaggtt 358
Score = 99.6 bits (50), Expect = 3e-019
Identities = 56/58 (96%)
Strand = Plus / Minus
Query: 336 aggttttggatgtgggatgtggaattgggggacctttaatagaaatcgccagattcag 393
||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 81 aggttctggatgtgggatgtggaattgggggacctttaatagaaattgccagattcag 24
>gb|CW047336.1|CW047336 104_285_10512671_114_30218 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10512671, DNA
sequence
Length = 665
Score = 137 bits (69), Expect = 1e-030
Identities = 84/89 (94%)
Strand = Plus / Minus
Query: 252 gatatccgggtgagacttcccgtgaagccattaagcggcaccagcattttttggcactac 311
|||||||||||||||||||||||||||||||||||||||| |||||||| | |||||||
Sbjct: 446 gatatccgggtgagacttcccgtgaagccattaagcggcatgagcattttattgcactac 387
Query: 312 aattggggctcaagaagggtatgaaggtt 340
||||||||||||||||||| |||||||||
Sbjct: 386 aattggggctcaagaaggggatgaaggtt 358
Score = 99.6 bits (50), Expect = 3e-019
Identities = 56/58 (96%)
Strand = Plus / Minus
Query: 336 aggttttggatgtgggatgtggaattgggggacctttaatagaaatcgccagattcag 393
||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 81 aggttctggatgtgggatgtggaattgggggacctttaatagaaattgccagattcag 24
>gb|CW144784.1|CW144784 104_537_11138124_148_34969_046 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11138124, DNA
sequence
Length = 647
Score = 137 bits (69), Expect = 1e-030
Identities = 84/89 (94%)
Strand = Plus / Plus
Query: 252 gatatccgggtgagacttcccgtgaagccattaagcggcaccagcattttttggcactac 311
|||||||||||||||||||||||||||||||||||||||| |||||||| | |||||||
Sbjct: 194 gatatccgggtgagacttcccgtgaagccattaagcggcatgagcattttattgcactac 253
Query: 312 aattggggctcaagaagggtatgaaggtt 340
||||||||||||||||||| |||||||||
Sbjct: 254 aattggggctcaagaaggggatgaaggtt 282
Score = 99.6 bits (50), Expect = 3e-019
Identities = 56/58 (96%)
Strand = Plus / Plus
Query: 336 aggttttggatgtgggatgtggaattgggggacctttaatagaaatcgccagattcag 393
||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 559 aggttctggatgtgggatgtggaattgggggacctttaatagaaattgccagattcag 616
>gb|CW438564.1|CW438564 fsbb001f156e04k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f156e04, DNA
sequence
Length = 758
Score = 113 bits (57), Expect = 2e-023
Identities = 81/89 (91%)
Strand = Plus / Minus
Query: 252 gatatccgggtgagacttcccgtgaagccattaagcggcaccagcattttttggcactac 311
||||||| |||||||||| |||||||||||| |||||||| |||||||| | |||||||
Sbjct: 723 gatatccaggtgagactttccgtgaagccatcaagcggcatgagcattttattgcactac 664
Query: 312 aattggggctcaagaagggtatgaaggtt 340
||||||||||||||||||| |||||||||
Sbjct: 663 aattggggctcaagaaggggatgaaggtt 635
Score = 99.6 bits (50), Expect = 3e-019
Identities = 56/58 (96%)
Strand = Plus / Minus
Query: 336 aggttttggatgtgggatgtggaattgggggacctttaatagaaatcgccagattcag 393
||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 410 aggttctggatgtgggatgtggaattgggggacctttaatagaaattgccagattcag 353
Score = 61.9 bits (31), Expect = 6e-008
Identities = 43/47 (91%)
Strand = Plus / Minus
Query: 403 gataactggactgaacaacaatgactaccacatctcaaggggcaagg 449
|||||||||| ||||| |||| |||||||| ||||||||||||||||
Sbjct: 241 gataactggattgaactacaacgactaccagatctcaaggggcaagg 195
>gb|CW321502.1|CW321502 104_814_11475589_116_35934_049 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11475589, DNA
sequence
Length = 673
Score = 107 bits (54), Expect = 1e-021
Identities = 78/86 (90%)
Strand = Plus / Plus
Query: 495 agggggacttcatggacatgccaatatctgataacacctttgatgcggcctatgcaatac 554
|||||||||||||| ||||||| ||| |||||||||||||||||||||||| |||||||
Sbjct: 337 agggggacttcatgaacatgccgatagctgataacacctttgatgcggcctttgcaatag 396
Query: 555 aggctacatgtcatgcaccagatgca 580
| ||||| ||||| ||||||||||||
Sbjct: 397 atgctacgtgtcacgcaccagatgca 422
Score = 61.9 bits (31), Expect = 6e-008
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 581 caaggcgtctatagtgaggtctaccgtgtgctgaaacct 619
||||||||||| |||||| ||||||||||||||||||||
Sbjct: 540 caaggcgtctacagtgagatctaccgtgtgctgaaacct 578
Score = 61.9 bits (31), Expect = 6e-008
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 403 gataactggactgaacaacaatgactaccacatctcaaggggcaagg 449
|||||||||| ||||| ||||||||||||| ||||||||||| ||||
Sbjct: 57 gataactggattgaactacaatgactaccagatctcaaggggaaagg 103
Score = 40.1 bits (20), Expect = 0.24
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 470 ttgagcgagcaatgctgcttcttgaagg 497
||||| |||||||||| |||||||||||
Sbjct: 207 ttgagtgagcaatgctccttcttgaagg 234
>gb|CL178987.1|CL178987 104_387_10894976_148_31905_272 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10894976, DNA
sequence
Length = 473
Score = 99.6 bits (50), Expect = 3e-019
Identities = 56/58 (96%)
Strand = Plus / Minus
Query: 336 aggttttggatgtgggatgtggaattgggggacctttaatagaaatcgccagattcag 393
||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 459 aggttctggatgtgggatgtggaattgggggacctttaatagaaattgccagattcag 402
Score = 61.9 bits (31), Expect = 6e-008
Identities = 43/47 (91%)
Strand = Plus / Minus
Query: 403 gataactggactgaacaacaatgactaccacatctcaaggggcaagg 449
|||||||||| ||||| |||| |||||||| ||||||||||||||||
Sbjct: 290 gataactggattgaactacaacgactaccagatctcaaggggcaagg 244
>gb|CW144783.1|CW144783 104_537_11138124_116_34973_046 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11138124, DNA
sequence
Length = 682
Score = 99.6 bits (50), Expect = 3e-019
Identities = 56/58 (96%)
Strand = Plus / Minus
Query: 336 aggttttggatgtgggatgtggaattgggggacctttaatagaaatcgccagattcag 393
||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 490 aggttctggatgtgggatgtggaattgggggacctttaatagaaattgccagattcag 433
Score = 61.9 bits (31), Expect = 6e-008
Identities = 43/47 (91%)
Strand = Plus / Minus
Query: 403 gataactggactgaacaacaatgactaccacatctcaaggggcaagg 449
|||||||||| ||||| ||||||||||||| ||||||||||| ||||
Sbjct: 321 gataactggattgaactacaatgactaccagatctcaaggggaaagg 275
Score = 58.0 bits (29), Expect = 1e-006
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 495 agggggacttcatggacatgccaatatctgataacaccttt 535
|||||||||||||| ||||||| ||| ||||||||||||||
Sbjct: 41 agggggacttcatgaacatgccgatagctgataacaccttt 1
Score = 40.1 bits (20), Expect = 0.24
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 470 ttgagcgagcaatgctgcttcttgaagg 497
||||| |||||||||| |||||||||||
Sbjct: 171 ttgagtgagcaatgctccttcttgaagg 144
>gb|CW368958.1|CW368958 fsbb001f043c10k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f043c10, DNA
sequence
Length = 649
Score = 99.6 bits (50), Expect = 3e-019
Identities = 56/58 (96%)
Strand = Plus / Minus
Query: 336 aggttttggatgtgggatgtggaattgggggacctttaatagaaatcgccagattcag 393
||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 217 aggttctggatgtgggatgtggaattgggggacctttaatagaaattgccagattcag 160
Score = 89.7 bits (45), Expect = 3e-016
Identities = 70/77 (90%), Gaps = 1/77 (1%)
Strand = Plus / Minus
Query: 265 gacttcccgtgaagccattaagcgg-caccagcattttttggcactacaattggggctca 323
||||||| ||||||||||||||||| || |||||||| | |||||||||||||||||||
Sbjct: 570 gacttccggtgaagccattaagcgggcatgagcattttattgcactacaattggggctca 511
Query: 324 agaagggtatgaaggtt 340
||||||| |||||||||
Sbjct: 510 agaaggggatgaaggtt 494
Score = 46.1 bits (23), Expect = 0.004
Identities = 42/47 (89%), Gaps = 1/47 (2%)
Strand = Plus / Minus
Query: 403 gataactggactgaacaacaatgactaccacatctcaaggggcaagg 449
|||||||||| ||||| ||||||||| ||| ||||||||||| ||||
Sbjct: 48 gataactggattgaactacaatgact-ccagatctcaaggggaaagg 3
>gb|CW025326.1|CW025326 104_226_10488128_114_30494 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10488128, DNA
sequence
Length = 665
Score = 91.7 bits (46), Expect = 7e-017
Identities = 55/58 (94%)
Strand = Plus / Minus
Query: 336 aggttttggatgtgggatgtggaattgggggacctttaatagaaatcgccagattcag 393
|||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct: 297 aggtcttggatgtgggatgtggaattgggggacccttaatagaaattgccagattcag 240
Score = 71.9 bits (36), Expect = 7e-011
Identities = 76/88 (86%), Gaps = 1/88 (1%)
Strand = Plus / Minus
Query: 252 gatatccgggtgagacttcccgtgaagccattaagcggcaccagcattttttggcactac 311
||||||| ||||| |||| |||||| || | |||||||| || |||||| |||||||||
Sbjct: 654 gatatccaggtgatactttccgtgaggcattaaagcggcatcaacattttatggcactac 595
Query: 312 aattggggctcaagaagggtatgaaggt 339
|||| |||||||||||||| ||||||||
Sbjct: 594 aatt-gggctcaagaagggcatgaaggt 568
Score = 61.9 bits (31), Expect = 6e-008
Identities = 43/47 (91%)
Strand = Plus / Minus
Query: 403 gataactggactgaacaacaatgactaccacatctcaaggggcaagg 449
|||||||||| ||||| |||| |||||||| ||||||||||||||||
Sbjct: 125 gataactggattgaactacaacgactaccagatctcaaggggcaagg 79
>gb|CW483981.1|CW483981 fsbb001f245o03k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f245o03, DNA
sequence
Length = 428
Score = 83.8 bits (42), Expect = 2e-014
Identities = 48/50 (96%)
Strand = Plus / Minus
Query: 344 gatgtgggatgtggaattgggggacctttaatagaaatcgccagattcag 393
||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct: 406 gatgtgggatgtggaattgggggccctttaatagaaattgccagattcag 357
Score = 54.0 bits (27), Expect = 2e-005
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 403 gataactggactgaacaacaatgactaccacatctcaaggggcaagg 449
|||||||||| ||||| ||| |||||||| ||||||||||||||||
Sbjct: 244 gataactggattgaactccaacgactaccagatctcaaggggcaagg 198
>gb|CL160147.1|CL160147 104_350_10804771_114_31822_211 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10804771, DNA
sequence
Length = 794
Score = 75.8 bits (38), Expect = 4e-012
Identities = 56/62 (90%)
Strand = Plus / Plus
Query: 126 cttgctcggagcaccggagggtcgattagcaaggaccaagtcaaatccgccgttgatcag 185
||||||||||||| |||||||||||| |||||||||||||||||| |||||||| |||
Sbjct: 318 cttgctcggagcatgggagggtcgattgacaaggaccaagtcaaatcggccgttgaccag 377
Query: 186 ta 187
||
Sbjct: 378 ta 379
>gb|CL160148.1|CL160148 104_350_10804771_116_31823_211 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10804771, DNA
sequence
Length = 686
Score = 75.8 bits (38), Expect = 4e-012
Identities = 56/62 (90%)
Strand = Plus / Minus
Query: 126 cttgctcggagcaccggagggtcgattagcaaggaccaagtcaaatccgccgttgatcag 185
||||||||||||| |||||||||||| |||||||||||||||||| |||||||| |||
Sbjct: 520 cttgctcggagcatgggagggtcgattgacaaggaccaagtcaaatcggccgttgaccag 461
Query: 186 ta 187
||
Sbjct: 460 ta 459
>gb|BF318031.1|BF318031 OV1_10_H12.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 627
Score = 75.8 bits (38), Expect = 4e-012
Identities = 61/69 (88%)
Strand = Plus / Plus
Query: 252 gatatccgggtgagacttcccgtgaagccattaagcggcaccagcattttttggcactac 311
||||||| |||||||||| |||||||||||| |||||||| |||||| | | |||||||
Sbjct: 559 gatatccaggtgagactttccgtgaagccatcaagcggcatgagcattntattgcactac 618
Query: 312 aattggggc 320
|||||||||
Sbjct: 619 aattggggc 627
Score = 54.0 bits (27), Expect = 2e-005
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 218 aacaagaatcaaggaagtcaaattacactgatttg 252
|||||||||| ||||| ||||||||||||||||||
Sbjct: 451 aacaagaatcgaggaaatcaaattacactgatttg 485
>gb|BI076120.1|BI076120 IP1_25_A09.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 552
Score = 71.9 bits (36), Expect = 7e-011
Identities = 51/56 (91%)
Strand = Plus / Plus
Query: 126 cttgctcggagcaccggagggtcgattagcaaggaccaagtcaaatccgccgttga 181
||||||||||||| |||||||||||| |||||||||||||||||| ||||||||
Sbjct: 116 cttgctcggagcatgggagggtcgattgacaaggaccaagtcaaatcggccgttga 171
Score = 61.9 bits (31), Expect = 6e-008
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 218 aacaagaatcaaggaagtcaaattacactgatttg 252
|||||||||||||||| ||||||||||||||||||
Sbjct: 435 aacaagaatcaaggaaatcaaattacactgatttg 469
>gb|CW108786.1|CW108786 104_480_11097710_116_34494_053 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11097710, DNA
sequence
Length = 599
Score = 69.9 bits (35), Expect = 3e-010
Identities = 38/39 (97%)
Strand = Plus / Minus
Query: 581 caaggcgtctatagtgaggtctaccgtgtgctgaaacct 619
||||||||||| |||||||||||||||||||||||||||
Sbjct: 592 caaggcgtctacagtgaggtctaccgtgtgctgaaacct 554
>gb|CW025249.1|CW025249 104_226_10488078_116_30523 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10488078, DNA
sequence
Length = 646
Score = 61.9 bits (31), Expect = 6e-008
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 218 aacaagaatcaaggaagtcaaattacactgatttg 252
|||||||||||||||| ||||||||||||||||||
Sbjct: 260 aacaagaatcaaggaaatcaaattacactgatttg 294
>gb|CW321503.1|CW321503 104_814_11475589_148_35938_049 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11475589, DNA
sequence
Length = 708
Score = 61.9 bits (31), Expect = 6e-008
Identities = 37/39 (94%)
Strand = Plus / Minus
Query: 581 caaggcgtctatagtgaggtctaccgtgtgctgaaacct 619
||||||||||| |||||| ||||||||||||||||||||
Sbjct: 645 caaggcgtctacagtgagatctaccgtgtgctgaaacct 607
>gb|CW188580.1|CW188580 104_608_11173117_116_36729_055 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11173117, DNA
sequence
Length = 239
Score = 56.0 bits (28), Expect = 4e-006
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 403 gataactggactgaacaacaatgactaccacatctc 438
|||||||||| ||||| |||||||||||||||||||
Sbjct: 46 gataactggattgaactacaatgactaccacatctc 81
>gb|BG464985.1|BG464985 EM1_34_F10.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 139
Score = 56.0 bits (28), Expect = 4e-006
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 252 gatatccgggtgagacttcccgtgaagccattaagcggca 291
||||||| |||||||||| |||||||||||| ||||||||
Sbjct: 89 gatatccaggtgagactttccgtgaagccatcaagcggca 128
>gb|BI074628.1|BI074628 IP1_13_B09.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 515
Score = 56.0 bits (28), Expect = 4e-006
Identities = 100/124 (80%)
Strand = Plus / Plus
Query: 332 atgaaggttttggatgtgggatgtggaattgggggacctttaatagaaatcgccagattc 391
|||||||||||||||||||| || ||||| || ||||| | | ||| || || |||||
Sbjct: 346 atgaaggttttggatgtgggctgcggaataggtggaccgctgagagagattgcaagattt 405
Query: 392 agctcaacatcgataactggactgaacaacaatgactaccacatctcaaggggcaaggag 451
|||||||| || | |||||| |||| |||||||| ||||| || | ||||| ||||||
Sbjct: 406 agctcaacttcagttactggattgaataacaatgaataccagataaccaggggaaaggag 465
Query: 452 ctca 455
||||
Sbjct: 466 ctca 469
>gb|CX611601.1|CX611601 ANR1_25_D05.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_25_D05_A002 5', mRNA sequence
Length = 804
Score = 56.0 bits (28), Expect = 4e-006
Identities = 100/124 (80%)
Strand = Plus / Plus
Query: 332 atgaaggttttggatgtgggatgtggaattgggggacctttaatagaaatcgccagattc 391
|||||||||||||||||||| || ||||| || ||||| | | ||| || || |||||
Sbjct: 466 atgaaggttttggatgtgggctgcggaataggtggaccgctgagagagattgcgagattt 525
Query: 392 agctcaacatcgataactggactgaacaacaatgactaccacatctcaaggggcaaggag 451
|||||||| || | |||||| |||| |||||||| ||||| || | ||||| ||||||
Sbjct: 526 agctcaacttcagttactggattgaataacaatgaataccagataaccaggggaaaggag 585
Query: 452 ctca 455
||||
Sbjct: 586 ctca 589
Score = 46.1 bits (23), Expect = 0.004
Identities = 44/51 (86%)
Strand = Plus / Plus
Query: 523 tgataacacctttgatgcggcctatgcaatacaggctacatgtcatgcacc 573
||||||||| |||||||| | |||||||| |||| ||||||||||||||
Sbjct: 657 tgataacacttttgatgctgtttatgcaattgaggcaacatgtcatgcacc 707
>gb|CX617235.1|CX617235 GABR1_32_C02.g1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_32_C02_A002 5', mRNA sequence
Length = 777
Score = 56.0 bits (28), Expect = 4e-006
Identities = 100/124 (80%)
Strand = Plus / Plus
Query: 332 atgaaggttttggatgtgggatgtggaattgggggacctttaatagaaatcgccagattc 391
||||||||||| |||||||| |||||||| || ||||| | | |||||| || |||||
Sbjct: 592 atgaaggttttagatgtgggctgtggaataggtggaccactgagagaaattgcaagattt 651
Query: 392 agctcaacatcgataactggactgaacaacaatgactaccacatctcaaggggcaaggag 451
|||||||| || | || ||| |||| |||||||| ||||| || | ||||| ||||||
Sbjct: 652 agctcaacttcagttaccggattgaataacaatgagtaccagataaccaggggaaaggag 711
Query: 452 ctca 455
||||
Sbjct: 712 ctca 715
>gb|CL178986.1|CL178986 104_387_10894976_116_31906_272 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10894976, DNA
sequence
Length = 772
Score = 54.0 bits (27), Expect = 2e-005
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 218 aacaagaatcaaggaagtcaaattacactgatttg 252
|||||||||| ||||| ||||||||||||||||||
Sbjct: 526 aacaagaatcgaggaaatcaaattacactgatttg 560
>gb|CW196810.1|CW196810 104_621_11181361_116_36817_015 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11181361, DNA
sequence
Length = 719
Score = 54.0 bits (27), Expect = 2e-005
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 218 aacaagaatcaaggaagtcaaattacactgatttg 252
|||||||||||||||| | ||||||||||||||||
Sbjct: 511 aacaagaatcaaggaaattaaattacactgatttg 545
>gb|CW196811.1|CW196811 104_621_11181361_148_36818_015 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11181361, DNA
sequence
Length = 721
Score = 54.0 bits (27), Expect = 2e-005
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 218 aacaagaatcaaggaagtcaaattacactgatttg 252
|||||||||||||||| | ||||||||||||||||
Sbjct: 455 aacaagaatcaaggaaattaaattacactgatttg 421
>gb|CW368957.1|CW368957 fsbb001f043c10f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f043c10, DNA
sequence
Length = 584
Score = 54.0 bits (27), Expect = 2e-005
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 218 aacaagaatcaaggaagtcaaattacactgatttg 252
|||||||||||||||| | ||||||||||||||||
Sbjct: 286 aacaagaatcaaggaaattaaattacactgatttg 320
>gb|CW483980.1|CW483980 fsbb001f245o03f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f245o03, DNA
sequence
Length = 629
Score = 54.0 bits (27), Expect = 2e-005
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 218 aacaagaatcaaggaagtcaaattacactgatttg 252
|||||||||| ||||| ||||||||||||||||||
Sbjct: 321 aacaagaatcgaggaaatcaaattacactgatttg 355
>gb|CF486612.1|CF486612 POL1_38_E10.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_38_E10_A002 5', mRNA sequence
Length = 738
Score = 50.1 bits (25), Expect = 2e-004
Identities = 82/101 (81%)
Strand = Plus / Plus
Query: 332 atgaaggttttggatgtgggatgtggaattgggggacctttaatagaaatcgccagattc 391
||||||||||| |||||||| |||||||| || ||||| | | |||||| || |||||
Sbjct: 625 atgaaggttttagatgtgggctgtggaataggtggaccactgagagaaattgcaagattt 684
Query: 392 agctcaacatcgataactggactgaacaacaatgactacca 432
|||||||| || | || ||| |||| |||||||| |||||
Sbjct: 685 agctcaacttcagttaccggattgaataacaatgagtacca 725
>gb|CW188581.1|CW188581 104_608_11173117_148_36730_055 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11173117, DNA
sequence
Length = 674
Score = 46.1 bits (23), Expect = 0.004
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 593 agtgaggtctaccgtgtgctgaaacct 619
|||||| ||||||||||||||||||||
Sbjct: 674 agtgagatctaccgtgtgctgaaacct 648
>gb|CW391886.1|CW391886 fsbb001f078d24f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f078d24, DNA
sequence
Length = 735
Score = 46.1 bits (23), Expect = 0.004
Identities = 44/51 (86%)
Strand = Plus / Minus
Query: 523 tgataacacctttgatgcggcctatgcaatacaggctacatgtcatgcacc 573
||||||||| |||||||| | |||||||| |||| ||||||||||||||
Sbjct: 399 tgataacacttttgatgctgtttatgcaattgaggcaacatgtcatgcacc 349
>gb|DN551953.1|DN551953 pSPR-RT-MR-H2_F07_S199 pSPR Sorghum propinquum cDNA, mRNA sequence
Length = 817
Score = 40.1 bits (20), Expect = 0.24
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 344 gatgtgggatgtggaattgg 363
||||||||||||||||||||
Sbjct: 17 gatgtgggatgtggaattgg 36
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 146,310
Number of Sequences: 832831
Number of extensions: 146310
Number of successful extensions: 37569
Number of sequences better than 0.5: 37
Number of HSP's better than 0.5 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 37486
Number of HSP's gapped (non-prelim): 81
length of query: 619
length of database: 491,359,669
effective HSP length: 19
effective length of query: 600
effective length of database: 475,535,880
effective search space: 285321528000
effective search space used: 285321528000
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)