BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3748501.2.2
(993 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW109957.1|CW109957 104_482_11103418_116_34510_039 Sorgh... 287 1e-075
gb|CW131966.1|CW131966 104_515_11115958_116_34797_093 Sorgh... 250 2e-064
gb|CW042853.1|CW042853 104_276_10507318_114_30483 Sorghum m... 226 3e-057
gb|CW071272.1|CW071272 104_323_10591451_114_30471 Sorghum m... 226 3e-057
gb|CW071276.1|CW071276 104_323_10591452_116_30437 Sorghum m... 226 3e-057
gb|CW131967.1|CW131967 104_515_11115958_148_34793_093 Sorgh... 226 3e-057
gb|CW376890.1|CW376890 fsbb001f054p19f0 Sorghum methylation... 226 3e-057
gb|CW376891.1|CW376891 fsbb001f054p19k0 Sorghum methylation... 226 3e-057
gb|CW150217.1|CW150217 104_549_11142910_116_36306_087 Sorgh... 200 2e-049
gb|CW188249.1|CW188249 104_608_11172930_116_36732_079 Sorgh... 200 2e-049
gb|CW188250.1|CW188250 104_608_11172930_148_36731_079 Sorgh... 200 2e-049
gb|CW385134.1|CW385134 fsbb001f068h22k0 Sorghum methylation... 200 2e-049
gb|CW417257.1|CW417257 fsbb001f120c20k0 Sorghum methylation... 200 2e-049
gb|CW497105.1|CW497105 fsbb001f289k18f0 Sorghum methylation... 196 3e-048
gb|CW150218.1|CW150218 104_549_11142910_148_36305_087 Sorgh... 194 1e-047
gb|CW390673.1|CW390673 fsbb001f076g23f0 Sorghum methylation... 194 1e-047
gb|CW146142.1|CW146142 104_539_11138833_148_34984_015 Sorgh... 192 4e-047
gb|CW042854.1|CW042854 104_276_10507318_116_30489 Sorghum m... 180 2e-043
gb|CW071274.1|CW071274 104_323_10591451_116_30454 Sorghum m... 168 6e-040
gb|CL181099.1|CL181099 104_391_10896514_116_31928_274 Sorgh... 165 1e-038
gb|CL181636.1|CL181636 104_392_10896882_116_31926_258 Sorgh... 165 1e-038
gb|CW022450.1|CW022450 104_161_10431848_5_30007 Sorghum met... 165 1e-038
gb|CW109958.1|CW109958 104_482_11103418_148_34514_039 Sorgh... 165 1e-038
gb|CW124849.1|CW124849 104_504_11112009_148_34701_033 Sorgh... 165 1e-038
gb|CW497106.1|CW497106 fsbb001f289k18k0 Sorghum methylation... 165 1e-038
gb|CW089052.1|CW089052 104_434_10948479_114_32601_060 Sorgh... 149 6e-034
gb|CW472155.1|CW472155 fsbb001f226o15k0 Sorghum methylation... 149 6e-034
gb|CW022374.1|CW022374 104_161_10431800_5_30007 Sorghum met... 145 9e-033
gb|CW390674.1|CW390674 fsbb001f076g23k0 Sorghum methylation... 131 1e-028
gb|CW146141.1|CW146141 104_539_11138833_116_34988_015 Sorgh... 121 1e-025
gb|CW385133.1|CW385133 fsbb001f068h22f0 Sorghum methylation... 121 1e-025
gb|CW021763.1|CW021763 104_160_10431448_5_30005 Sorghum met... 68 2e-009
gb|CW067037.1|CW067037 104_314_10524024_115_30127 Sorghum m... 68 2e-009
gb|CW094129.1|CW094129 104_457_11000145_116_37477_039 Sorgh... 68 2e-009
gb|CW155127.1|CW155127 104_557_11145969_116_36359_039 Sorgh... 68 2e-009
gb|CW264940.1|CW264940 104_734_11231586_148_35262_079 Sorgh... 68 2e-009
gb|CW454037.1|CW454037 fsbb001f198e20f0 Sorghum methylation... 68 2e-009
gb|AW287022.2|AW287022 LG1_264_E07.b1_A002 Light Grown 1 (L... 68 2e-009
gb|BE360223.1|BE360223 DG1_62_C07.b1_A002 Dark Grown 1 (DG1... 68 2e-009
gb|BE360326.1|BE360326 DG1_62_C07.g1_A002 Dark Grown 1 (DG1... 68 2e-009
gb|BE360993.1|BE360993 DG1_68_E11.g1_A002 Dark Grown 1 (DG1... 68 2e-009
gb|CF427262.1|CF427262 PH1_4_F06.g1_A002 Phosphorous-defici... 68 2e-009
gb|CF430008.1|CF430008 PH1_25_B05.g1_A002 Phosphorous-defic... 68 2e-009
gb|CN127798.1|CN127798 RHOH1_25_D05.b1_A002 Acid- and alkal... 68 2e-009
gb|CN127879.1|CN127879 RHOH1_25_D05.g1_A002 Acid- and alkal... 68 2e-009
gb|CN129542.1|CN129542 RHOH1_36_B03.b3_A002 Acid- and alkal... 68 2e-009
gb|CN129628.1|CN129628 RHOH1_36_B03.g1_A002 Acid- and alkal... 68 2e-009
gb|AW922579.1|AW922579 DG1_45_F02.g1_A002 Dark Grown 1 (DG1... 66 7e-009
gb|CN140719.1|CN140719 OX1_46_B10.g1_A002 Oxidatively-stres... 60 4e-007
gb|CW432390.1|CW432390 fsbb001f147b04k0 Sorghum methylation... 44 0.024
gb|AW671472.1|AW671472 LG1_347_C12.b1_A002 Light Grown 1 (L... 44 0.024
gb|CW072103.1|CW072103 104_325_10592076_114_30536 Sorghum m... 42 0.096
gb|CW072104.1|CW072104 104_325_10592076_116_30540 Sorghum m... 42 0.096
gb|CW092703.1|CW092703 104_455_10999320_114_33046_090 Sorgh... 42 0.096
gb|CW398639.1|CW398639 fsbb001f088c17f0 Sorghum methylation... 42 0.096
gb|CW455902.1|CW455902 fsbb001f201a03k0 Sorghum methylation... 42 0.096
gb|CW122704.1|CW122704 104_501_11110816_148_34674_052 Sorgh... 40 0.38
>gb|CW109957.1|CW109957 104_482_11103418_116_34510_039 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11103418, DNA
sequence
Length = 508
Score = 287 bits (145), Expect = 1e-075
Identities = 229/257 (89%)
Strand = Plus / Plus
Query: 429 tggaaggcgagtcctaccacaagagctgcttcaagtgctcgcacgggggctgcatcctca 488
||||||||||| || ||| ||||||||||||||||||||| ||| ||||||||||||| |
Sbjct: 7 tggaaggcgaggcccaccccaagagctgcttcaagtgctcacacaggggctgcatcctga 66
Query: 489 ccacctcctcctacgccgcgctcaacggcgttctgtactgcaagatccacttcgcgcagc 548
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct: 67 ccacctcctcctacgccgcgctcaacggcgtcttgtactgcaagatccacttcaggcagc 126
Query: 549 tgttcatggagaaggggagctacagccacatgatgaagaagagcccgtcccaggatacgc 608
|||||||||||||||||||||||| |||||||| |||||||||| |||||||||| ||
Sbjct: 127 tgttcatggagaaggggagctacaaccacatgaagaagaagagcacgtcccaggaggtgc 186
Query: 609 tgccggacatggccgccgacgagcaaccgccggaaccggcgccaccgcaagacggggaag 668
|||||||| |||| ||||| |||||||| ||| |||| ||| ||||| |||| | |||
Sbjct: 187 tgccggacttggctgccgaggagcaacctccgcaaccagcggcaccggaagatgacaaag 246
Query: 669 gagaggacaactaggag 685
|||||||||||||||||
Sbjct: 247 gagaggacaactaggag 263
Score = 141 bits (71), Expect = 1e-031
Identities = 123/138 (89%), Gaps = 8/138 (5%)
Strand = Plus / Plus
Query: 817 gtgaactcggtttgtcgtccagctggctgtaagtgtaccagatgccttcgttacgtctga 876
|||||||||||||||| || | ||||||||||||||||||||| ||||||||||
Sbjct: 366 gtgaactcggtttgtcatcaa----gctgtaagtgtaccagatgccctcgttacgtc--- 418
Query: 877 tgaggctcatgacaatggcgattttggcatggagctgtgttagcctcgcggaaaaactgt 936
||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||| |||
Sbjct: 419 tgaggctcatgacaatggcaattttggcatggagctgtgttagcctcacgg-aaaattgt 477
Query: 937 aactgtgtaagcagaact 954
|||| |||||||||||||
Sbjct: 478 aactttgtaagcagaact 495
Score = 40.1 bits (20), Expect = 0.38
Identities = 41/48 (85%)
Strand = Plus / Plus
Query: 234 tgtactgcaagacccacttcgagcagctcttcaaggagaccgggagct 281
|||||||||||| ||||||| |||||| |||| ||||| |||||||
Sbjct: 100 tgtactgcaagatccacttcaggcagctgttcatggagaaggggagct 147
>gb|CW131966.1|CW131966 104_515_11115958_116_34797_093 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11115958, DNA
sequence
Length = 553
Score = 250 bits (126), Expect = 2e-064
Identities = 153/162 (94%)
Strand = Plus / Minus
Query: 420 agttgactctggaaggcgagtcctaccacaagagctgcttcaagtgctcgcacgggggct 479
|||| ||| ||||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct: 166 agttaactttggaaggcgaggcctaccacaagagctgcttcaagtgctcacacgggggct 107
Query: 480 gcatcctcaccacctcctcctacgccgcgctcaacggcgttctgtactgcaagatccact 539
||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 106 gcatcctgaccacctcctcctacgccgcgctcaacggcgtcttgtactgcaagatccact 47
Query: 540 tcgcgcagctgttcatggagaaggggagctacagccacatga 581
||| ||||||||||||||||||||||||||||| ||||||||
Sbjct: 46 tcgggcagctgttcatggagaaggggagctacaaccacatga 5
Score = 145 bits (73), Expect = 9e-033
Identities = 85/89 (95%)
Strand = Plus / Minus
Query: 333 caagggcccccagcaagctatcatctgcgttttctggtactcaggataagtgtgcagctt 392
|||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||| |
Sbjct: 415 caagggccccaagcaagctatcgtctgcattttctggtactcaggataagtgtgcagcat 356
Query: 393 gccagaaaacagtgtacccgctggagaag 421
|||||||||||||||||||||||||||||
Sbjct: 355 gccagaaaacagtgtacccgctggagaag 327
Score = 48.1 bits (24), Expect = 0.002
Identities = 42/48 (87%)
Strand = Plus / Minus
Query: 234 tgtactgcaagacccacttcgagcagctcttcaaggagaccgggagct 281
|||||||||||| |||||||| |||||| |||| ||||| |||||||
Sbjct: 64 tgtactgcaagatccacttcgggcagctgttcatggagaaggggagct 17
>gb|CW042853.1|CW042853 104_276_10507318_114_30483 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10507318, DNA
sequence
Length = 576
Score = 226 bits (114), Expect = 3e-057
Identities = 143/152 (94%), Gaps = 3/152 (1%)
Strand = Plus / Plus
Query: 51 caggcgtcggcaccatgtcttctttcaccggcacgcaggacaagtgcgcggagtgcgaca 110
||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||||
Sbjct: 334 caggcgtcggcaccatgtctt---tcaccggcacgcaggacaagtgcacggcgtgcgaca 390
Query: 111 agaccgtccacttcatcgacctcctcacggccgacggcgtcacctaccataagacatgct 170
|||||||||| ||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct: 391 agaccgtccatttcatcgacctcctcacggccgacggcgtcatctaccacaagacatgct 450
Query: 171 tcaagtgcagccactgcaaagggatcctctcg 202
||||||||||||||||||| ||||||||||||
Sbjct: 451 tcaagtgcagccactgcaaggggatcctctcg 482
>gb|CW071272.1|CW071272 104_323_10591451_114_30471 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10591451, DNA
sequence
Length = 734
Score = 226 bits (114), Expect = 3e-057
Identities = 143/152 (94%), Gaps = 3/152 (1%)
Strand = Plus / Minus
Query: 51 caggcgtcggcaccatgtcttctttcaccggcacgcaggacaagtgcgcggagtgcgaca 110
||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||||
Sbjct: 529 caggcgtcggcaccatgtctt---tcaccggcacgcaggacaagtgcacggcgtgcgaca 473
Query: 111 agaccgtccacttcatcgacctcctcacggccgacggcgtcacctaccataagacatgct 170
|||||||||| ||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct: 472 agaccgtccatttcatcgacctcctcacggccgacggcgtcatctaccacaagacatgct 413
Query: 171 tcaagtgcagccactgcaaagggatcctctcg 202
||||||||||||||||||| ||||||||||||
Sbjct: 412 tcaagtgcagccactgcaaggggatcctctcg 381
Score = 196 bits (99), Expect = 3e-048
Identities = 102/103 (99%)
Strand = Plus / Minus
Query: 202 gatgtgcagctactcttccatggacggtgtgctgtactgcaagacccacttcgagcagct 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 gatgtgcagctactcttccatggacggtgtgctgtactgcaagacccacttcgagcagct 163
Query: 262 cttcaaggagaccgggagcttctccaagaacttcacgccaggt 304
|||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 162 cttcaaggagaccgggagcttctccaagaagttcacgccaggt 120
Score = 50.1 bits (25), Expect = 4e-004
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 521 ctgtactgcaagatccacttcgcgcagctgttcatggagaaggggagct 569
||||||||||||| |||||||| |||||| |||| ||||| |||||||
Sbjct: 191 ctgtactgcaagacccacttcgagcagctcttcaaggagaccgggagct 143
>gb|CW071276.1|CW071276 104_323_10591452_116_30437 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10591452, DNA
sequence
Length = 679
Score = 226 bits (114), Expect = 3e-057
Identities = 143/152 (94%), Gaps = 3/152 (1%)
Strand = Plus / Plus
Query: 51 caggcgtcggcaccatgtcttctttcaccggcacgcaggacaagtgcgcggagtgcgaca 110
||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||||
Sbjct: 516 caggcgtcggcaccatgtctt---tcaccggcacgcaggacaagtgcacggcgtgcgaca 572
Query: 111 agaccgtccacttcatcgacctcctcacggccgacggcgtcacctaccataagacatgct 170
|||||||||| ||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct: 573 agaccgtccatttcatcgacctcctcacggccgacggcgtcatctaccacaagacatgct 632
Query: 171 tcaagtgcagccactgcaaagggatcctctcg 202
||||||||||||||||||| ||||||||||||
Sbjct: 633 tcaagtgcagccactgcaaggggatcctctcg 664
>gb|CW131967.1|CW131967 104_515_11115958_148_34793_093 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11115958, DNA
sequence
Length = 613
Score = 226 bits (114), Expect = 3e-057
Identities = 143/152 (94%), Gaps = 3/152 (1%)
Strand = Plus / Plus
Query: 51 caggcgtcggcaccatgtcttctttcaccggcacgcaggacaagtgcgcggagtgcgaca 110
||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||||
Sbjct: 375 caggcgtcggcaccatgtctt---tcaccggcacgcaggacaagtgcacggcgtgcgaca 431
Query: 111 agaccgtccacttcatcgacctcctcacggccgacggcgtcacctaccataagacatgct 170
|||||||||| ||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct: 432 agaccgtccatttcatcgacctcctcacggccgacggcgtcatctaccacaagacatgct 491
Query: 171 tcaagtgcagccactgcaaagggatcctctcg 202
||||||||||||||||||| ||||||||||||
Sbjct: 492 tcaagtgcagccactgcaaggggatcctctcg 523
>gb|CW376890.1|CW376890 fsbb001f054p19f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f054p19, DNA
sequence
Length = 642
Score = 226 bits (114), Expect = 3e-057
Identities = 143/152 (94%), Gaps = 3/152 (1%)
Strand = Plus / Plus
Query: 51 caggcgtcggcaccatgtcttctttcaccggcacgcaggacaagtgcgcggagtgcgaca 110
||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||||
Sbjct: 244 caggcgtcggcaccatgtctt---tcaccggcacgcaggacaagtgcacggcgtgcgaca 300
Query: 111 agaccgtccacttcatcgacctcctcacggccgacggcgtcacctaccataagacatgct 170
|||||||||| ||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct: 301 agaccgtccatttcatcgacctcctcacggccgacggcgtcatctaccacaagacatgct 360
Query: 171 tcaagtgcagccactgcaaagggatcctctcg 202
||||||||||||||||||| ||||||||||||
Sbjct: 361 tcaagtgcagccactgcaaggggatcctctcg 392
Score = 178 bits (90), Expect = 6e-043
Identities = 90/90 (100%)
Strand = Plus / Plus
Query: 202 gatgtgcagctactcttccatggacggtgtgctgtactgcaagacccacttcgagcagct 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 gatgtgcagctactcttccatggacggtgtgctgtactgcaagacccacttcgagcagct 610
Query: 262 cttcaaggagaccgggagcttctccaagaa 291
||||||||||||||||||||||||||||||
Sbjct: 611 cttcaaggagaccgggagcttctccaagaa 640
Score = 50.1 bits (25), Expect = 4e-004
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 521 ctgtactgcaagatccacttcgcgcagctgttcatggagaaggggagct 569
||||||||||||| |||||||| |||||| |||| ||||| |||||||
Sbjct: 582 ctgtactgcaagacccacttcgagcagctcttcaaggagaccgggagct 630
>gb|CW376891.1|CW376891 fsbb001f054p19k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f054p19, DNA
sequence
Length = 483
Score = 226 bits (114), Expect = 3e-057
Identities = 143/152 (94%), Gaps = 3/152 (1%)
Strand = Plus / Minus
Query: 51 caggcgtcggcaccatgtcttctttcaccggcacgcaggacaagtgcgcggagtgcgaca 110
||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||||
Sbjct: 365 caggcgtcggcaccatgtctt---tcaccggcacgcaggacaagtgcacggcgtgcgaca 309
Query: 111 agaccgtccacttcatcgacctcctcacggccgacggcgtcacctaccataagacatgct 170
|||||||||| ||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct: 308 agaccgtccatttcatcgacctcctcacggccgacggcgtcatctaccacaagacatgct 249
Query: 171 tcaagtgcagccactgcaaagggatcctctcg 202
||||||||||||||||||| ||||||||||||
Sbjct: 248 tcaagtgcagccactgcaaggggatcctctcg 217
Score = 115 bits (58), Expect = 8e-024
Identities = 58/58 (100%)
Strand = Plus / Minus
Query: 202 gatgtgcagctactcttccatggacggtgtgctgtactgcaagacccacttcgagcag 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58 gatgtgcagctactcttccatggacggtgtgctgtactgcaagacccacttcgagcag 1
>gb|CW150217.1|CW150217 104_549_11142910_116_36306_087 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11142910, DNA
sequence
Length = 653
Score = 200 bits (101), Expect = 2e-049
Identities = 137/149 (91%)
Strand = Plus / Plus
Query: 429 tggaaggcgagtcctaccacaagagctgcttcaagtgctcgcacgggggctgcatcctca 488
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 120 tggaaggcgagtcttaccacaagagctgcttcaagtgctcgcacgggggctgcatcctga 179
Query: 489 ccacctcctcctacgccgcgctcaacggcgttctgtactgcaagatccacttcgcgcagc 548
| ||||||||||||||||||||||| || | || |||||||||||||||||| ||||||
Sbjct: 180 caacctcctcctacgccgcgctcaatgggatcctctactgcaagatccacttctcgcagc 239
Query: 549 tgttcatggagaaggggagctacagccac 577
|||||| ||||||||| ||||||| ||||
Sbjct: 240 tgttcaaggagaagggcagctacaaccac 268
>gb|CW188249.1|CW188249 104_608_11172930_116_36732_079 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11172930, DNA
sequence
Length = 627
Score = 200 bits (101), Expect = 2e-049
Identities = 137/149 (91%)
Strand = Plus / Minus
Query: 429 tggaaggcgagtcctaccacaagagctgcttcaagtgctcgcacgggggctgcatcctca 488
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 525 tggaaggcgagtcttaccacaagagctgcttcaagtgctcgcacgggggctgcatcctga 466
Query: 489 ccacctcctcctacgccgcgctcaacggcgttctgtactgcaagatccacttcgcgcagc 548
| ||||||||||||||||||||||| || | || |||||||||||||||||| ||||||
Sbjct: 465 caacctcctcctacgccgcgctcaatgggatcctctactgcaagatccacttctcgcagc 406
Query: 549 tgttcatggagaaggggagctacagccac 577
|||||| ||||||||| ||||||| ||||
Sbjct: 405 tgttcaaggagaagggcagctacaaccac 377
>gb|CW188250.1|CW188250 104_608_11172930_148_36731_079 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11172930, DNA
sequence
Length = 623
Score = 200 bits (101), Expect = 2e-049
Identities = 137/149 (91%)
Strand = Plus / Plus
Query: 429 tggaaggcgagtcctaccacaagagctgcttcaagtgctcgcacgggggctgcatcctca 488
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 115 tggaaggcgagtcttaccacaagagctgcttcaagtgctcgcacgggggctgcatcctga 174
Query: 489 ccacctcctcctacgccgcgctcaacggcgttctgtactgcaagatccacttcgcgcagc 548
| ||||||||||||||||||||||| || | || |||||||||||||||||| ||||||
Sbjct: 175 caacctcctcctacgccgcgctcaatgggatcctctactgcaagatccacttctcgcagc 234
Query: 549 tgttcatggagaaggggagctacagccac 577
|||||| ||||||||| ||||||| ||||
Sbjct: 235 tgttcaaggagaagggcagctacaaccac 263
>gb|CW385134.1|CW385134 fsbb001f068h22k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f068h22, DNA
sequence
Length = 671
Score = 200 bits (101), Expect = 2e-049
Identities = 137/149 (91%)
Strand = Plus / Minus
Query: 429 tggaaggcgagtcctaccacaagagctgcttcaagtgctcgcacgggggctgcatcctca 488
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 327 tggaaggcgagtcttaccacaagagctgcttcaagtgctcgcacgggggctgcatcctga 268
Query: 489 ccacctcctcctacgccgcgctcaacggcgttctgtactgcaagatccacttcgcgcagc 548
| ||||||||||||||||||||||| || | || |||||||||||||||||| ||||||
Sbjct: 267 caacctcctcctacgccgcgctcaatgggatcctctactgcaagatccacttctcgcagc 208
Query: 549 tgttcatggagaaggggagctacagccac 577
|||||| ||||||||| ||||||| ||||
Sbjct: 207 tgttcaaggagaagggcagctacaaccac 179
Score = 67.9 bits (34), Expect = 2e-009
Identities = 67/78 (85%)
Strand = Plus / Minus
Query: 344 agcaagctatcatctgcgttttctggtactcaggataagtgtgcagcttgccagaaaaca 403
||||||||||||||||| || ||||| ||||| ||||| || ||||| |||||||||||
Sbjct: 534 agcaagctatcatctgcattctctggaactcaagataaatgcgcagcctgccagaaaacc 475
Query: 404 gtgtacccgctggagaag 421
||||| || ||||||||
Sbjct: 474 gtgtatccattggagaag 457
>gb|CW417257.1|CW417257 fsbb001f120c20k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f120c20, DNA
sequence
Length = 777
Score = 200 bits (101), Expect = 2e-049
Identities = 137/149 (91%)
Strand = Plus / Minus
Query: 429 tggaaggcgagtcctaccacaagagctgcttcaagtgctcgcacgggggctgcatcctca 488
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 553 tggaaggcgagtcttaccacaagagctgcttcaagtgctcgcacgggggctgcatcctga 494
Query: 489 ccacctcctcctacgccgcgctcaacggcgttctgtactgcaagatccacttcgcgcagc 548
| ||||||||||||||||||||||| || | || |||||||||||||||||| ||||||
Sbjct: 493 caacctcctcctacgccgcgctcaatgggatcctctactgcaagatccacttctcgcagc 434
Query: 549 tgttcatggagaaggggagctacagccac 577
|||||| ||||||||| ||||||| ||||
Sbjct: 433 tgttcaaggagaagggcagctacaaccac 405
Score = 60.0 bits (30), Expect = 4e-007
Identities = 51/58 (87%)
Strand = Plus / Minus
Query: 344 agcaagctatcatctgcgttttctggtactcaggataagtgtgcagcttgccagaaaa 401
||||||||||||||||| || ||||| ||||| ||||| || ||||| ||||||||||
Sbjct: 761 agcaagctatcatctgcattctctggaactcaagataaatgcgcagcctgccagaaaa 704
>gb|CW497105.1|CW497105 fsbb001f289k18f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f289k18, DNA
sequence
Length = 711
Score = 196 bits (99), Expect = 3e-048
Identities = 102/103 (99%)
Strand = Plus / Plus
Query: 202 gatgtgcagctactcttccatggacggtgtgctgtactgcaagacccacttcgagcagct 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 173 gatgtgcagctactcttccatggacggtgtgctgtactgcaagacccacttcgagcagct 232
Query: 262 cttcaaggagaccgggagcttctccaagaacttcacgccaggt 304
|||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 233 cttcaaggagaccgggagcttctccaagaagttcacgccaggt 275
Score = 145 bits (73), Expect = 9e-033
Identities = 85/89 (95%)
Strand = Plus / Plus
Query: 333 caagggcccccagcaagctatcatctgcgttttctggtactcaggataagtgtgcagctt 392
|||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||| |
Sbjct: 519 caagggccccaagcaagctatcgtctgcattttctggtactcaggataagtgtgcagcat 578
Query: 393 gccagaaaacagtgtacccgctggagaag 421
|||||||||||||||||||||||||||||
Sbjct: 579 gccagaaaacagtgtacccgctggagaag 607
Score = 50.1 bits (25), Expect = 4e-004
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 521 ctgtactgcaagatccacttcgcgcagctgttcatggagaaggggagct 569
||||||||||||| |||||||| |||||| |||| ||||| |||||||
Sbjct: 204 ctgtactgcaagacccacttcgagcagctcttcaaggagaccgggagct 252
>gb|CW150218.1|CW150218 104_549_11142910_148_36305_087 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11142910, DNA
sequence
Length = 668
Score = 194 bits (98), Expect = 1e-047
Identities = 136/149 (91%)
Strand = Plus / Minus
Query: 429 tggaaggcgagtcctaccacaagagctgcttcaagtgctcgcacgggggctgcatcctca 488
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 575 tggaaggcgagtcttaccacaagagctgcttcaagtgctcgcacgggggctgcatcctga 516
Query: 489 ccacctcctcctacgccgcgctcaacggcgttctgtactgcaagatccacttcgcgcagc 548
| |||||||| |||||||||||||| || | || |||||||||||||||||| ||||||
Sbjct: 515 caacctcctcntacgccgcgctcaatgggatcctctactgcaagatccacttctcgcagc 456
Query: 549 tgttcatggagaaggggagctacagccac 577
|||||| ||||||||| ||||||| ||||
Sbjct: 455 tgttcaaggagaagggcagctacaaccac 427
>gb|CW390673.1|CW390673 fsbb001f076g23f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f076g23, DNA
sequence
Length = 706
Score = 194 bits (98), Expect = 1e-047
Identities = 138/150 (92%), Gaps = 1/150 (0%)
Strand = Plus / Plus
Query: 429 tggaaggcgagtcctaccacaagagctgcttcaagtgctcgcacgggggctgcatcctca 488
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 156 tggaaggcgagtcttaccacaagagctgcttcaagtgctcgcacgggggctgcatcctga 215
Query: 489 ccacctcctcctacgccgcgctcaacggcgttctgtactgcaagatccacttcgcgcagc 548
| ||||||||||||||||||||||| || | || |||||||||||||||||| ||||||
Sbjct: 216 caacctcctcctacgccgcgctcaatgggatcctctactgcaagatccacttctcgcagc 275
Query: 549 tgttcatggagaagggg-agctacagccac 577
|||||| |||||||||| ||||||| ||||
Sbjct: 276 tgttcaaggagaaggggcagctacaaccac 305
>gb|CW146142.1|CW146142 104_539_11138833_148_34984_015 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11138833, DNA
sequence
Length = 676
Score = 192 bits (97), Expect = 4e-047
Identities = 136/149 (91%)
Strand = Plus / Minus
Query: 429 tggaaggcgagtcctaccacaagagctgcttcaagtgctcgcacgggggctgcatcctca 488
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 547 tggaaggcgagtcttaccacaagagctgcttcaagtgctcgcacgggggctgcatcctga 488
Query: 489 ccacctcctcctacgccgcgctcaacggcgttctgtactgcaagatccacttcgcgcagc 548
| |||||||| |||||||||||||| || | || |||||||||||||||||| ||||||
Sbjct: 487 caacctcctcttacgccgcgctcaatgggatcctctactgcaagatccacttctcgcagc 428
Query: 549 tgttcatggagaaggggagctacagccac 577
|||||| ||||||||| ||||||| ||||
Sbjct: 427 tgttcaaggagaagggcagctacaaccac 399
>gb|CW042854.1|CW042854 104_276_10507318_116_30489 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10507318, DNA
sequence
Length = 631
Score = 180 bits (91), Expect = 2e-043
Identities = 112/119 (94%)
Strand = Plus / Minus
Query: 420 agttgactctggaaggcgagtcctaccacaagagctgcttcaagtgctcgcacgggggct 479
|||| ||| ||||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct: 119 agttaactttggaaggcgaggcctaccacaagagctgcttcaagtgctcacacgggggct 60
Query: 480 gcatcctcaccacctcctcctacgccgcgctcaacggcgttctgtactgcaagatccac 538
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 59 gcatcctgaccacctcctcctacgccgcgctcaacggcgtcttgtactgcaagatccac 1
Score = 145 bits (73), Expect = 9e-033
Identities = 85/89 (95%)
Strand = Plus / Minus
Query: 333 caagggcccccagcaagctatcatctgcgttttctggtactcaggataagtgtgcagctt 392
|||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||| |
Sbjct: 368 caagggccccaagcaagctatcgtctgcattttctggtactcaggataagtgtgcagcat 309
Query: 393 gccagaaaacagtgtacccgctggagaag 421
|||||||||||||||||||||||||||||
Sbjct: 308 gccagaaaacagtgtacccgctggagaag 280
>gb|CW071274.1|CW071274 104_323_10591451_116_30454 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10591451, DNA
sequence
Length = 633
Score = 168 bits (85), Expect = 6e-040
Identities = 111/119 (93%), Gaps = 3/119 (2%)
Strand = Plus / Plus
Query: 51 caggcgtcggcaccatgtcttctttcaccggcacgcaggacaagtgcgcggagtgcgaca 110
||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||||
Sbjct: 518 caggcgtcggcaccatgtctt---tcaccggcacgcaggacaagtgcacggcgtgcgaca 574
Query: 111 agaccgtccacttcatcgacctcctcacggccgacggcgtcacctaccataagacatgc 169
|||||||||| ||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct: 575 agaccgtccatttcatcgacctcctcacggccgacggcgtcatctaccacaagacatgc 633
>gb|CL181099.1|CL181099 104_391_10896514_116_31928_274 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10896514, DNA
sequence
Length = 739
Score = 165 bits (83), Expect = 1e-038
Identities = 125/138 (90%), Gaps = 7/138 (5%)
Strand = Plus / Plus
Query: 817 gtgaactcggtttgtcgtccagctggctgtaagtgtaccagatgccttcgttacgtctga 876
|||||||||||||||| || | ||||||||||||||||||||| ||||||||||
Sbjct: 35 gtgaactcggtttgtcatcaa----gctgtaagtgtaccagatgccctcgttacgtc--- 87
Query: 877 tgaggctcatgacaatggcgattttggcatggagctgtgttagcctcgcggaaaaactgt 936
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct: 88 tgaggctcatgacaatggcaattttggcatggagctgtgttagcctcgcggaaaaattgt 147
Query: 937 aactgtgtaagcagaact 954
|||| |||||||||||||
Sbjct: 148 aactttgtaagcagaact 165
>gb|CL181636.1|CL181636 104_392_10896882_116_31926_258 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10896882, DNA
sequence
Length = 674
Score = 165 bits (83), Expect = 1e-038
Identities = 125/138 (90%), Gaps = 7/138 (5%)
Strand = Plus / Plus
Query: 817 gtgaactcggtttgtcgtccagctggctgtaagtgtaccagatgccttcgttacgtctga 876
|||||||||||||||| || | ||||||||||||||||||||| ||||||||||
Sbjct: 35 gtgaactcggtttgtcatcaa----gctgtaagtgtaccagatgccctcgttacgtc--- 87
Query: 877 tgaggctcatgacaatggcgattttggcatggagctgtgttagcctcgcggaaaaactgt 936
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct: 88 tgaggctcatgacaatggcaattttggcatggagctgtgttagcctcgcggaaaaattgt 147
Query: 937 aactgtgtaagcagaact 954
|||| |||||||||||||
Sbjct: 148 aactttgtaagcagaact 165
>gb|CW022450.1|CW022450 104_161_10431848_5_30007 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10431848, DNA
sequence
Length = 600
Score = 165 bits (83), Expect = 1e-038
Identities = 125/138 (90%), Gaps = 7/138 (5%)
Strand = Plus / Plus
Query: 817 gtgaactcggtttgtcgtccagctggctgtaagtgtaccagatgccttcgttacgtctga 876
|||||||||||||||| || | ||||||||||||||||||||| ||||||||||
Sbjct: 271 gtgaactcggtttgtcatcaa----gctgtaagtgtaccagatgccctcgttacgtc--- 323
Query: 877 tgaggctcatgacaatggcgattttggcatggagctgtgttagcctcgcggaaaaactgt 936
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct: 324 tgaggctcatgacaatggcaattttggcatggagctgtgttagcctcgcggaaaaattgt 383
Query: 937 aactgtgtaagcagaact 954
|||| |||||||||||||
Sbjct: 384 aactttgtaagcagaact 401
Score = 159 bits (80), Expect = 6e-037
Identities = 134/152 (88%)
Strand = Plus / Plus
Query: 534 tccacttcgcgcagctgttcatggagaaggggagctacagccacatgatgaagaagagcc 593
||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct: 17 tccacttcgggcagctgttcatggagaaggggagctacaaccacatgaagaagaagagca 76
Query: 594 cgtcccaggatacgctgccggacatggccgccgacgagcaaccgccggaaccggcgccac 653
|||||||||| |||||||||| |||| ||||| |||||||| ||| |||| ||| |||
Sbjct: 77 cgtcccaggaggtgctgccggacttggctgccgaggagcaacctccgcaaccagcggcac 136
Query: 654 cgcaagacggggaaggagaggacaactaggag 685
|| |||| | | ||||||||||||||||||||
Sbjct: 137 cggaagatgagaaaggagaggacaactaggag 168
>gb|CW109958.1|CW109958 104_482_11103418_148_34514_039 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11103418, DNA
sequence
Length = 695
Score = 165 bits (83), Expect = 1e-038
Identities = 125/138 (90%), Gaps = 7/138 (5%)
Strand = Plus / Minus
Query: 817 gtgaactcggtttgtcgtccagctggctgtaagtgtaccagatgccttcgttacgtctga 876
|||||||||||||||| || | ||||||||||||||||||||| ||||||||||
Sbjct: 499 gtgaactcggtttgtcatcaa----gctgtaagtgtaccagatgccctcgttacgtc--- 447
Query: 877 tgaggctcatgacaatggcgattttggcatggagctgtgttagcctcgcggaaaaactgt 936
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct: 446 tgaggctcatgacaatggcaattttggcatggagctgtgttagcctcgcggaaaaattgt 387
Query: 937 aactgtgtaagcagaact 954
|||| |||||||||||||
Sbjct: 386 aactttgtaagcagaact 369
Score = 60.0 bits (30), Expect = 4e-007
Identities = 63/74 (85%)
Strand = Plus / Minus
Query: 612 cggacatggccgccgacgagcaaccgccggaaccggcgccaccgcaagacggggaaggag 671
||||| |||| ||||| |||||||| ||| |||| ||| ||||| |||| | | ||||||
Sbjct: 675 cggacttggctgccgaggagcaacctccgcaaccagcggcaccggaagatgagaaaggag 616
Query: 672 aggacaactaggag 685
||||||||||||||
Sbjct: 615 aggacaactaggag 602
>gb|CW124849.1|CW124849 104_504_11112009_148_34701_033 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11112009, DNA
sequence
Length = 593
Score = 165 bits (83), Expect = 1e-038
Identities = 125/138 (90%), Gaps = 7/138 (5%)
Strand = Plus / Plus
Query: 817 gtgaactcggtttgtcgtccagctggctgtaagtgtaccagatgccttcgttacgtctga 876
|||||||||||||||| || | ||||||||||||||||||||| ||||||||||
Sbjct: 49 gtgaactcggtttgtcatcaa----gctgtaagtgtaccagatgccctcgttacgtc--- 101
Query: 877 tgaggctcatgacaatggcgattttggcatggagctgtgttagcctcgcggaaaaactgt 936
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct: 102 tgaggctcatgacaatggcaattttggcatggagctgtgttagcctcgcggaaaaattgt 161
Query: 937 aactgtgtaagcagaact 954
|||| |||||||||||||
Sbjct: 162 aactttgtaagcagaact 179
>gb|CW497106.1|CW497106 fsbb001f289k18k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f289k18, DNA
sequence
Length = 753
Score = 165 bits (83), Expect = 1e-038
Identities = 125/138 (90%), Gaps = 7/138 (5%)
Strand = Plus / Minus
Query: 817 gtgaactcggtttgtcgtccagctggctgtaagtgtaccagatgccttcgttacgtctga 876
|||||||||||||||| || | ||||||||||||||||||||| ||||||||||
Sbjct: 651 gtgaactcggtttgtcatcaa----gctgtaagtgtaccagatgccctcgttacgtc--- 599
Query: 877 tgaggctcatgacaatggcgattttggcatggagctgtgttagcctcgcggaaaaactgt 936
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct: 598 tgaggctcatgacaatggcaattttggcatggagctgtgttagcctcgcggaaaaattgt 539
Query: 937 aactgtgtaagcagaact 954
|||| |||||||||||||
Sbjct: 538 aactttgtaagcagaact 521
>gb|CW089052.1|CW089052 104_434_10948479_114_32601_060 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10948479, DNA
sequence
Length = 700
Score = 149 bits (75), Expect = 6e-034
Identities = 108/119 (90%)
Strand = Plus / Minus
Query: 71 tctttcaccggcacgcaggacaagtgcgcggagtgcgacaagaccgtccacttcatcgac 130
||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct: 126 tctttcaccggcacgcaggacaagtgcaaaacctgcgacaagacggtccacttcatcgac 67
Query: 131 ctcctcacggccgacggcgtcacctaccataagacatgcttcaagtgcagccactgcaa 189
|||||||| |||||||||||| | ||||| |||||||||||||||||||||||||||||
Sbjct: 66 ctcctcaccgccgacggcgtctcgtaccacaagacatgcttcaagtgcagccactgcaa 8
>gb|CW472155.1|CW472155 fsbb001f226o15k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f226o15, DNA
sequence
Length = 702
Score = 149 bits (75), Expect = 6e-034
Identities = 108/119 (90%)
Strand = Plus / Minus
Query: 71 tctttcaccggcacgcaggacaagtgcgcggagtgcgacaagaccgtccacttcatcgac 130
||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct: 295 tctttcaccggcacgcaggacaagtgcaaaacctgcgacaagacggtccacttcatcgac 236
Query: 131 ctcctcacggccgacggcgtcacctaccataagacatgcttcaagtgcagccactgcaa 189
|||||||| |||||||||||| | ||||| |||||||||||||||||||||||||||||
Sbjct: 235 ctcctcaccgccgacggcgtctcgtaccacaagacatgcttcaagtgcagccactgcaa 177
>gb|CW022374.1|CW022374 104_161_10431800_5_30007 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10431800, DNA
sequence
Length = 501
Score = 145 bits (73), Expect = 9e-033
Identities = 118/132 (89%), Gaps = 7/132 (5%)
Strand = Plus / Plus
Query: 817 gtgaactcggtttgtcgtccagctggctgtaagtgtaccagatgccttcgttacgtctga 876
|||||||||||||||| || | ||||||||||||||||||||| ||||||||||
Sbjct: 244 gtgaactcggtttgtcatcaa----gctgtaagtgtaccagatgccctcgttacgtc--- 296
Query: 877 tgaggctcatgacaatggcgattttggcatggagctgtgttagcctcgcggaaaaactgt 936
||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| |||
Sbjct: 297 tgaggctcatgacaatggcaattttggcatggagctgtgttagcctcccggaaaaattgt 356
Query: 937 aactgtgtaagc 948
|||| |||||||
Sbjct: 357 aactttgtaagc 368
Score = 125 bits (63), Expect = 8e-027
Identities = 123/142 (86%), Gaps = 1/142 (0%)
Strand = Plus / Plus
Query: 544 gcagctgttcatggagaaggggagctacagccacatgatgaagaagagcccgtcccagga 603
||||||||||||||||||||||||||||| |||| ||| |||||||||| ||||||||||
Sbjct: 1 gcagctgttcatggagaaggggagctaca-ccacctgaagaagaagagcacgtcccagga 59
Query: 604 tacgctgccggacatggccgccgacgagcaaccgccggaaccggcgccaccgcaagacgg 663
|||||||||| |||| ||||| |||||||| ||| |||| ||| |||| |||| |
Sbjct: 60 ggtgctgccggacttggctgccgaggagcaacctccgcaaccagcggnaccggaagatga 119
Query: 664 ggaaggagaggacaactaggag 685
| ||||||||||||||||||||
Sbjct: 120 gaaaggagaggacaactaggag 141
>gb|CW390674.1|CW390674 fsbb001f076g23k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f076g23, DNA
sequence
Length = 700
Score = 131 bits (66), Expect = 1e-028
Identities = 99/110 (90%)
Strand = Plus / Minus
Query: 468 cgcacgggggctgcatcctcaccacctcctcctacgccgcgctcaacggcgttctgtact 527
||||||||||||||||||| || ||||||||||||||||||||||| || | || ||||
Sbjct: 700 cgcacgggggctgcatcctgacaacctcctcctacgccgcgctcaatgggatcctctact 641
Query: 528 gcaagatccacttcgcgcagctgttcatggagaaggggagctacagccac 577
|||||||||||||| |||||||||||| ||||||||| ||||||| ||||
Sbjct: 640 gcaagatccacttctcgcagctgttcaaggagaagggcagctacaaccac 591
>gb|CW146141.1|CW146141 104_539_11138833_116_34988_015 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11138833, DNA
sequence
Length = 736
Score = 121 bits (61), Expect = 1e-025
Identities = 79/85 (92%)
Strand = Plus / Plus
Query: 207 gcagctactcttccatggacggtgtgctgtactgcaagacccacttcgagcagctcttca 266
||||||||||||||||||||||||| |||||||||||||| ||||| || ||||||||||
Sbjct: 74 gcagctactcttccatggacggtgtcctgtactgcaagacgcactttgaacagctcttca 133
Query: 267 aggagaccgggagcttctccaagaa 291
||||||| |||| ||||||||||||
Sbjct: 134 aggagacagggaccttctccaagaa 158
Score = 75.8 bits (38), Expect = 7e-012
Identities = 54/58 (93%), Gaps = 1/58 (1%)
Strand = Plus / Plus
Query: 429 tggaaggcgagtcctaccacaagagctgcttcaagtgctcgcacgggggctgcatcct 486
||||||||||||| ||| ||||||||||||| |||||||||||||||||||||||||
Sbjct: 679 tggaaggcgagtcttac-acaagagctgctttcagtgctcgcacgggggctgcatcct 735
Score = 67.9 bits (34), Expect = 2e-009
Identities = 67/78 (85%)
Strand = Plus / Plus
Query: 344 agcaagctatcatctgcgttttctggtactcaggataagtgtgcagcttgccagaaaaca 403
||||||||||||||||| || ||||| ||||| ||||| || ||||| |||||||||||
Sbjct: 472 agcaagctatcatctgcattctctggaactcaagataaatgcgcagcctgccagaaaacc 531
Query: 404 gtgtacccgctggagaag 421
||||| || ||||||||
Sbjct: 532 gtgtatccattggagaag 549
>gb|CW385133.1|CW385133 fsbb001f068h22f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f068h22, DNA
sequence
Length = 739
Score = 121 bits (61), Expect = 1e-025
Identities = 79/85 (92%)
Strand = Plus / Plus
Query: 207 gcagctactcttccatggacggtgtgctgtactgcaagacccacttcgagcagctcttca 266
||||||||||||||||||||||||| |||||||||||||| ||||| || ||||||||||
Sbjct: 147 gcagctactcttccatggacggtgtcctgtactgcaagacgcactttgaacagctcttca 206
Query: 267 aggagaccgggagcttctccaagaa 291
||||||| |||| ||||||||||||
Sbjct: 207 aggagacagggaccttctccaagaa 231
Score = 67.9 bits (34), Expect = 2e-009
Identities = 67/78 (85%)
Strand = Plus / Plus
Query: 344 agcaagctatcatctgcgttttctggtactcaggataagtgtgcagcttgccagaaaaca 403
||||||||||||||||| || ||||| ||||| ||||| || ||||| |||||||||||
Sbjct: 545 agcaagctatcatctgcattctctggaactcaagataaatgcgcagcctgccagaaaacc 604
Query: 404 gtgtacccgctggagaag 421
||||| || ||||||||
Sbjct: 605 gtgtatccattggagaag 622
>gb|CW021763.1|CW021763 104_160_10431448_5_30005 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10431448, DNA
sequence
Length = 420
Score = 67.9 bits (34), Expect = 2e-009
Identities = 46/50 (92%)
Strand = Plus / Plus
Query: 230 gtgctgtactgcaagacccacttcgagcagctcttcaaggagaccgggag 279
|||| |||||||||| |||| ||||||||||| |||||||||||||||||
Sbjct: 115 gtgccgtactgcaaggcccatttcgagcagctgttcaaggagaccgggag 164
>gb|CW067037.1|CW067037 104_314_10524024_115_30127 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10524024, DNA
sequence
Length = 543
Score = 67.9 bits (34), Expect = 2e-009
Identities = 46/50 (92%)
Strand = Plus / Minus
Query: 230 gtgctgtactgcaagacccacttcgagcagctcttcaaggagaccgggag 279
|||| |||||||||| |||| ||||||||||| |||||||||||||||||
Sbjct: 368 gtgccgtactgcaaggcccatttcgagcagctgttcaaggagaccgggag 319
>gb|CW094129.1|CW094129 104_457_11000145_116_37477_039 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11000145, DNA
sequence
Length = 690
Score = 67.9 bits (34), Expect = 2e-009
Identities = 46/50 (92%)
Strand = Plus / Minus
Query: 230 gtgctgtactgcaagacccacttcgagcagctcttcaaggagaccgggag 279
|||| |||||||||| |||| ||||||||||| |||||||||||||||||
Sbjct: 96 gtgccgtactgcaaggcccatttcgagcagctgttcaaggagaccgggag 47
>gb|CW155127.1|CW155127 104_557_11145969_116_36359_039 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11145969, DNA
sequence
Length = 740
Score = 67.9 bits (34), Expect = 2e-009
Identities = 46/50 (92%)
Strand = Plus / Minus
Query: 230 gtgctgtactgcaagacccacttcgagcagctcttcaaggagaccgggag 279
|||| |||||||||| |||| ||||||||||| |||||||||||||||||
Sbjct: 480 gtgccgtactgcaaggcccatttcgagcagctgttcaaggagaccgggag 431
>gb|CW264940.1|CW264940 104_734_11231586_148_35262_079 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11231586, DNA
sequence
Length = 712
Score = 67.9 bits (34), Expect = 2e-009
Identities = 46/50 (92%)
Strand = Plus / Plus
Query: 230 gtgctgtactgcaagacccacttcgagcagctcttcaaggagaccgggag 279
|||| |||||||||| |||| ||||||||||| |||||||||||||||||
Sbjct: 285 gtgccgtactgcaaggcccatttcgagcagctgttcaaggagaccgggag 334
>gb|CW454037.1|CW454037 fsbb001f198e20f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f198e20, DNA
sequence
Length = 763
Score = 67.9 bits (34), Expect = 2e-009
Identities = 46/50 (92%)
Strand = Plus / Plus
Query: 230 gtgctgtactgcaagacccacttcgagcagctcttcaaggagaccgggag 279
|||| |||||||||| |||| ||||||||||| |||||||||||||||||
Sbjct: 253 gtgccgtactgcaaggcccatttcgagcagctgttcaaggagaccgggag 302
>gb|AW287022.2|AW287022 LG1_264_E07.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 511
Score = 67.9 bits (34), Expect = 2e-009
Identities = 46/50 (92%)
Strand = Plus / Plus
Query: 230 gtgctgtactgcaagacccacttcgagcagctcttcaaggagaccgggag 279
|||| |||||||||| |||| ||||||||||| |||||||||||||||||
Sbjct: 305 gtgccgtactgcaaggcccatttcgagcagctgttcaaggagaccgggag 354
>gb|BE360223.1|BE360223 DG1_62_C07.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 597
Score = 67.9 bits (34), Expect = 2e-009
Identities = 46/50 (92%)
Strand = Plus / Plus
Query: 230 gtgctgtactgcaagacccacttcgagcagctcttcaaggagaccgggag 279
|||| |||||||||| |||| ||||||||||| |||||||||||||||||
Sbjct: 305 gtgccgtactgcaaggcccatttcgagcagctgttcaaggagaccgggag 354
>gb|BE360326.1|BE360326 DG1_62_C07.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 632
Score = 67.9 bits (34), Expect = 2e-009
Identities = 46/50 (92%)
Strand = Plus / Plus
Query: 230 gtgctgtactgcaagacccacttcgagcagctcttcaaggagaccgggag 279
|||| |||||||||| |||| ||||||||||| |||||||||||||||||
Sbjct: 9 gtgccgtactgcaaggcccatttcgagcagctgttcaaggagaccgggag 58
>gb|BE360993.1|BE360993 DG1_68_E11.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 632
Score = 67.9 bits (34), Expect = 2e-009
Identities = 46/50 (92%)
Strand = Plus / Plus
Query: 230 gtgctgtactgcaagacccacttcgagcagctcttcaaggagaccgggag 279
|||| |||||||||| |||| ||||||||||| |||||||||||||||||
Sbjct: 17 gtgccgtactgcaaggcccatttcgagcagctgttcaaggagaccgggag 66
>gb|CF427262.1|CF427262 PH1_4_F06.g1_A002 Phosphorous-deficient seedlings Sorghum bicolor
cDNA clone PH1_4_F06_A002 5', mRNA sequence
Length = 567
Score = 67.9 bits (34), Expect = 2e-009
Identities = 46/50 (92%)
Strand = Plus / Plus
Query: 230 gtgctgtactgcaagacccacttcgagcagctcttcaaggagaccgggag 279
|||| |||||||||| |||| ||||||||||| |||||||||||||||||
Sbjct: 450 gtgccgtactgcaaggcccatttcgagcagctgttcaaggagaccgggag 499
>gb|CF430008.1|CF430008 PH1_25_B05.g1_A002 Phosphorous-deficient seedlings Sorghum bicolor
cDNA clone PH1_25_B05_A002 5', mRNA sequence
Length = 723
Score = 67.9 bits (34), Expect = 2e-009
Identities = 46/50 (92%)
Strand = Plus / Minus
Query: 230 gtgctgtactgcaagacccacttcgagcagctcttcaaggagaccgggag 279
|||| |||||||||| |||| ||||||||||| |||||||||||||||||
Sbjct: 718 gtgccgtactgcaaggcccatttcgagcagctgttcaaggagaccgggag 669
>gb|CN127798.1|CN127798 RHOH1_25_D05.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_25_D05_A002 3', mRNA sequence
Length = 720
Score = 67.9 bits (34), Expect = 2e-009
Identities = 46/50 (92%)
Strand = Plus / Plus
Query: 230 gtgctgtactgcaagacccacttcgagcagctcttcaaggagaccgggag 279
|||| |||||||||| |||| ||||||||||| |||||||||||||||||
Sbjct: 83 gtgccgtactgcaaggcccatttcgagcagctgttcaaggagaccgggag 132
>gb|CN127879.1|CN127879 RHOH1_25_D05.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_25_D05_A002 5', mRNA sequence
Length = 692
Score = 67.9 bits (34), Expect = 2e-009
Identities = 46/50 (92%)
Strand = Plus / Plus
Query: 230 gtgctgtactgcaagacccacttcgagcagctcttcaaggagaccgggag 279
|||| |||||||||| |||| ||||||||||| |||||||||||||||||
Sbjct: 225 gtgccgtactgcaaggcccatttcgagcagctgttcaaggagaccgggag 274
>gb|CN129542.1|CN129542 RHOH1_36_B03.b3_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_36_B03_A002 3', mRNA sequence
Length = 819
Score = 67.9 bits (34), Expect = 2e-009
Identities = 46/50 (92%)
Strand = Plus / Plus
Query: 230 gtgctgtactgcaagacccacttcgagcagctcttcaaggagaccgggag 279
|||| |||||||||| |||| ||||||||||| |||||||||||||||||
Sbjct: 167 gtgccgtactgcaaggcccatttcgagcagctgttcaaggagaccgggag 216
>gb|CN129628.1|CN129628 RHOH1_36_B03.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_36_B03_A002 5', mRNA sequence
Length = 784
Score = 67.9 bits (34), Expect = 2e-009
Identities = 46/50 (92%)
Strand = Plus / Plus
Query: 230 gtgctgtactgcaagacccacttcgagcagctcttcaaggagaccgggag 279
|||| |||||||||| |||| ||||||||||| |||||||||||||||||
Sbjct: 269 gtgccgtactgcaaggcccatttcgagcagctgttcaaggagaccgggag 318
>gb|AW922579.1|AW922579 DG1_45_F02.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 629
Score = 65.9 bits (33), Expect = 7e-009
Identities = 42/45 (93%)
Strand = Plus / Plus
Query: 235 gtactgcaagacccacttcgagcagctcttcaaggagaccgggag 279
|||||||||| |||| ||||||||||| |||||||||||||||||
Sbjct: 4 gtactgcaaggcccatttcgagcagctgttcaaggagaccgggag 48
>gb|CN140719.1|CN140719 OX1_46_B10.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_46_B10_A002 5', mRNA sequence
Length = 544
Score = 60.0 bits (30), Expect = 4e-007
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 230 gtgctgtactgcaagacccacttcgagcagctcttcaaggagaccg 275
|||| |||||||||| |||| ||||||||||| |||||||||||||
Sbjct: 214 gtgccgtactgcaaggcccatttcgagcagctgttcaaggagaccg 259
>gb|CW432390.1|CW432390 fsbb001f147b04k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f147b04, DNA
sequence
Length = 564
Score = 44.1 bits (22), Expect = 0.024
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 446 cacaagagctgcttcaagtgct 467
||||||||||||||||||||||
Sbjct: 283 cacaagagctgcttcaagtgct 262
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 257,810
Number of Sequences: 832831
Number of extensions: 257810
Number of successful extensions: 77394
Number of sequences better than 0.5: 57
Number of HSP's better than 0.5 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 77189
Number of HSP's gapped (non-prelim): 187
length of query: 993
length of database: 491,359,669
effective HSP length: 20
effective length of query: 973
effective length of database: 474,703,049
effective search space: 461886066677
effective search space used: 461886066677
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)