BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3712941.2.1
(1473 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN138559.1|CN138559 OX1_64_B06.g1_A002 Oxidatively-stres... 1358 0.0
gb|CN125348.1|CN125348 RHOH1_10_C02.g1_A002 Acid- and alkal... 1296 0.0
gb|CN133194.1|CN133194 OX1_10_E12.g1_A002 Oxidatively-stres... 1170 0.0
gb|CN147054.1|CN147054 WOUND1_46_F06.g1_A002 Wounded leaves... 1128 0.0
gb|CX610292.1|CX610292 ANR1_17_F05.g1_A002 Anaerobic roots ... 1106 0.0
gb|CN143855.1|CN143855 WOUND1_18_F12.g1_A002 Wounded leaves... 1084 0.0
gb|CD221150.1|CD221150 CCC1_73_G10.g1_A007 Callus culture/c... 1082 0.0
gb|CN138473.1|CN138473 OX1_64_B06.b1_A002 Oxidatively-stres... 1017 0.0
gb|CN147002.1|CN147002 WOUND1_46_F06.b1_A002 Wounded leaves... 1009 0.0
gb|CN151636.1|CN151636 WOUND1_76_D10.g1_A002 Wounded leaves... 995 0.0
gb|CX610206.1|CX610206 ANR1_17_F05.b1_A002 Anaerobic roots ... 971 0.0
gb|CF433732.1|CF433732 NIT1_28_D12.g1_A002 Nitrogen-deficie... 959 0.0
gb|CN133114.1|CN133114 OX1_10_E12.b1_A002 Oxidatively-stres... 944 0.0
gb|CN143769.1|CN143769 WOUND1_18_F12.b1_A002 Wounded leaves... 914 0.0
gb|BE918701.1|BE918701 FM1_1_E05.g1_A003 Floral-Induced Mer... 908 0.0
gb|CD229015.1|CD229015 CCC1_11_B11.g1_A007 Callus culture/c... 890 0.0
gb|BE918894.1|BE918894 FM1_1_E05.b1_A003 Floral-Induced Mer... 813 0.0
gb|CD204242.1|CD204242 HS1_4_C06.g1_A012 Heat-shocked seedl... 807 0.0
gb|CF433592.1|CF433592 NIT1_28_D12.b1_A002 Nitrogen-deficie... 769 0.0
gb|CD221042.1|CD221042 CCC1_73_G10.b1_A007 Callus culture/c... 751 0.0
gb|BF657373.1|BF657373 OV2_24_C06.g1_A002 Ovary 2 (OV2) Sor... 724 0.0
gb|CD204136.1|CD204136 HS1_4_C06.b1_A012 Heat-shocked seedl... 567 e-159
gb|AW287541.2|AW287541 LG1_242_D02.b1_A002 Light Grown 1 (L... 549 e-154
gb|BG103529.1|BG103529 RHIZ2_37_F06.g1_A003 Rhizome2 (RHIZ2... 543 e-152
gb|BF657447.1|BF657447 OV2_24_C06.b1_A002 Ovary 2 (OV2) Sor... 452 e-125
gb|BE918813.1|BE918813 FM1_2_C09.g1_A003 Floral-Induced Mer... 347 2e-093
gb|CW254138.1|CW254138 104_718_11225499_116_35120_014 Sorgh... 339 4e-091
gb|CW254139.1|CW254139 104_718_11225499_148_35116_014 Sorgh... 339 4e-091
gb|CW408253.1|CW408253 fsbb001f102b05f0 Sorghum methylation... 339 4e-091
gb|CW175197.1|CW175197 104_587_11157809_148_36838_069 Sorgh... 190 3e-046
gb|CW108245.1|CW108245 104_478_11097037_148_34481_049 Sorgh... 172 6e-041
gb|CW326769.1|CW326769 104_822_11478392_148_35969_028 Sorgh... 168 9e-040
gb|CW471643.1|CW471643 fsbb001f225l01k0 Sorghum methylation... 168 9e-040
gb|CW492663.1|CW492663 fsbb001f283a21k0 Sorghum methylation... 168 9e-040
gb|CW497705.1|CW497705 fsbb001f290j13k0 Sorghum methylation... 168 9e-040
gb|CW408254.1|CW408254 fsbb001f102b05k0 Sorghum methylation... 125 1e-026
gb|CW107247.1|CW107247 104_477_11096475_116_34476_010 Sorgh... 103 5e-020
gb|CW108244.1|CW108244 104_478_11097037_116_34485_049 Sorgh... 60 6e-007
gb|AW563938.1|AW563938 LG1_275_H03.b1_A002 Light Grown 1 (L... 48 0.002
gb|CF428932.1|CF428932 PH1_18_E11.g1_A002 Phosphorous-defic... 48 0.002
gb|CF431599.1|CF431599 NIT1_8_G05.g1_A002 Nitrogen-deficien... 48 0.002
gb|CF432039.1|CF432039 NIT1_16_B07.g1_A002 Nitrogen-deficie... 48 0.002
gb|CN125224.1|CN125224 RHOH1_9_F12.g1_A002 Acid- and alkali... 48 0.002
gb|CN128070.1|CN128070 RHOH1_26_G06.g1_A002 Acid- and alkal... 48 0.002
gb|CN130313.1|CN130313 RHOH1_40_D10.g1_A002 Acid- and alkal... 48 0.002
gb|CX621222.1|CX621222 GABR1_56_F11.g1_A002 GA- or brassino... 48 0.002
gb|AW283623.1|AW283623 LG1_242_D02.g1_A002 Light Grown 1 (L... 42 0.14
>gb|CN138559.1|CN138559 OX1_64_B06.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_64_B06_A002 5', mRNA sequence
Length = 839
Score = 1358 bits (685), Expect = 0.0
Identities = 782/813 (96%), Gaps = 1/813 (0%)
Strand = Plus / Plus
Query: 16 gcagcgactgccggcgatggcgagcctcaccctgccgccggcgccccccaacccacgcca 75
||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 27 gcagcgattgccggcgatggcgagcctcaccctgccgccggcgcccccgaacccacgcca 86
Query: 76 ggacgccatcgacctccacaaggccttcaaagggtttggatgtgacagtacaacagggat 135
||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||| |||
Sbjct: 87 ggacgccatcgacctccacaaggccttcaaagggtttggctgtgatagtacagcagtgat 146
Query: 136 aaacatacttactcatcgcgattcggggcagcgtggactcattcaacaggaatacagggt 195
|||||||||||||||||||||||| | ||||||||||| |||||||||||||||||||
Sbjct: 147 aaacatacttactcatcgcgattcagttcagcgtggacttattcaacaggaatacaggg- 205
Query: 196 ctatgtatcatgaggaactctcccaccgtatttcatctgaactcagtggaaaccacaaga 255
||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct: 206 ctatgtatcatgaggaactcttccatcgtatttcatctgaactcagtggaaaccacaaga 265
Query: 256 aagctatgtcgctgtggattcttgatcctgctggacgtgatgcaactgttttgagagaag 315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 aagctatgtcgctgtggattcttgatcctgctggacgtgatgcaactgttttgagagaag 325
Query: 316 ctctaaatggtgacactatggatctgagagcagccactgagattatatgttccaggacac 375
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 ctctaagcggtgacactatggatctgagagcagccactgagattatatgttccaggacac 385
Query: 376 catcacagttgcaaataatgaaacagacttattatgctagattcggtacttatcttgagc 435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 catcacagttgcaaataatgaaacagacttattatgctagattcggtacttatcttgagc 445
Query: 436 atgacattgctcaccacacatccggtgatcaccagaagcttttacttgcatatatgggga 495
||||||||| |||||||||||| || ||||||||||||||||||||||| ||| ||||||
Sbjct: 446 atgacattggtcaccacacatctggcgatcaccagaagcttttacttgcctatgtgggga 505
Query: 496 ttccacgctatgaaggtcccgaggttgatcctacaattgtgacacatgatgcaaaggatt 555
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct: 506 ttccacgctatgaaggtcctgaggttgatcctaccattgtgacacatgatgcaaaggatt 565
Query: 556 tgtacaaagctggtgagaaaaggctgggtacggacgagaagatttttatccgtgttttca 615
|||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct: 566 tgtacaaagctggtgagaaaaggctgggtacggatgagaagacctttatccgtgttttca 625
Query: 616 ctgaacgcagttgggcacacttggcatctgtttcttctgcttaccatcatatgtatgacc 675
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 ctgaacgcagttgggcacacttggcatctgtttcttctgcttaccatcatatgtatgacc 685
Query: 676 ggaaattagagaaggttatcaagagcgaaacttctggaaactttgaatttgcacttttga 735
||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 686 ggaaattagagaaggttgtcaagagcgaaacatctggaaactttgaatttgcacttttga 745
Query: 736 ctatcctcagatgcgcggaaaacccagcaaagtattttgctaagctcttacgaaaggcca 795
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 746 ctatcctcagatgcgcggaaaacccagcgaagtattttgctaagctcttacgaaaggcca 805
Query: 796 tgaaaggtttaggcactgatgacatgacactta 828
|||||||||||||||| ||||| | ||||||||
Sbjct: 806 tgaaaggtttaggcaccgatgagaagacactta 838
>gb|CN125348.1|CN125348 RHOH1_10_C02.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_10_C02_A002 5', mRNA sequence
Length = 842
Score = 1296 bits (654), Expect = 0.0
Identities = 752/782 (96%), Gaps = 2/782 (0%)
Strand = Plus / Plus
Query: 16 gcagcgactgccggcgatggcgagcctcaccctgccgccggcgccccccaacccacgcca 75
||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 63 gcagcgattgccggcgatggcgagcctcaccctgccgccggcgcccccgaacccacgcca 122
Query: 76 ggacgccatcgacctccacaaggccttcaaagggtttggatgtgacagtacaacagggat 135
||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||| |||
Sbjct: 123 ggacgccatcgacctccacaaggccttcaaagggtttggctgtgatagtacagcagtgat 182
Query: 136 aaacatacttactcatcgcgattcggggcagcgtggactcattcaacaggaatacagggt 195
|||||||||||||||||||||||| | ||||||||||| |||||||||||||||||||
Sbjct: 183 aaacatacttactcatcgcgattcagttcagcgtggacttattcaacaggaatacaggg- 241
Query: 196 ctatgtatcatgaggaactctcccaccgtatttcatctgaactcagtggaaaccacaaga 255
||||||||||||||||||||| ||| |||||||||||||||||||||||||| |||||||
Sbjct: 242 ctatgtatcatgaggaactcttccatcgtatttcatctgaactcagtggaaaacacaaga 301
Query: 256 aagctatgtcgctgtggattcttgatcctgctggacgtgatgcaactgttttgagagaag 315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 aagctatgtcgctgtggattcttgatcctgctggacgtgatgcaactgttttgagagaag 361
Query: 316 ctctaaatggtgacactatggatctgagagcagccactgagattatatgttccaggacac 375
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 ctctaagcggtgacactatggatctgagagcagccactgagattatatgttccaggacac 421
Query: 376 catcacagttgcaaataatgaaacagacttattatgctagattcggtacttatcttgagc 435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 catcacagttgcaaataatgaaacagacttattatgctagattcggtacttatcttgagc 481
Query: 436 atgacattgctcaccacacatccggtgatcaccagaagcttttacttgcatatatgggga 495
||||||||| |||||||||||| || ||||||||||||||||||||||| ||| ||||||
Sbjct: 482 atgacattggtcaccacacatctggcgatcaccagaagcttttacttgcctatgtgggga 541
Query: 496 ttccacgctatgaaggtcccgaggttgatcctacaattgtgacacatgatgcaaaggatt 555
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct: 542 ttccacgctatgaaggtcctgaggttgatcctaccattgtgacacatgatgcaaaggatt 601
Query: 556 tgtacaaagctggtgagaaaaggctgggtacggacgagaagatttttatccgtgttttca 615
|||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct: 602 tgtacaaagctggtgagaaaaggctgggtacggatgagaagacctttatccgtgttttca 661
Query: 616 ctgaacgcagttgggcacacttggcatctgtttcttctgcttaccatcatatgtatgacc 675
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 662 ctgaacgcagttgggcacac-tggcatctgtttcttctgcttaccatcatatgtatgacc 720
Query: 676 ggaaattagagaaggttatcaagagcgaaacttctggaaactttgaatttgcacttttga 735
||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 721 ggaaattagagaaggttgtcaagagcgaaacatctggaaactttgaatttgcacttttga 780
Query: 736 ctatcctcagatgcgcggaaaacccagcaaagtattttgctaagctcttacgaaaggcca 795
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 781 ctatcctcagatgcgcggaaaacccagcgaagtattttgctaagctcttacgaaaggcca 840
Query: 796 tg 797
||
Sbjct: 841 tg 842
>gb|CN133194.1|CN133194 OX1_10_E12.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_10_E12_A002 5', mRNA sequence
Length = 767
Score = 1170 bits (590), Expect = 0.0
Identities = 678/706 (96%), Gaps = 1/706 (0%)
Strand = Plus / Plus
Query: 16 gcagcgactgccggcgatggcgagcctcaccctgccgccggcgccccccaacccacgcca 75
||||||| |||||||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct: 63 gcagcgattgccggcgatggtgagcctcaccctgccgccggcgcccccgaacccacgcca 122
Query: 76 ggacgccatcgacctccacaaggccttcaaagggtttggatgtgacagtacaacagggat 135
||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||| |||
Sbjct: 123 ggacgccatcgacctccacaaggccttcaaagggtttggctgtgatagtacagcagtgat 182
Query: 136 aaacatacttactcatcgcgattcggggcagcgtggactcattcaacaggaatacagggt 195
|||||||||||||||||||||||| | ||||||||||| |||||||||||||||||||
Sbjct: 183 aaacatacttactcatcgcgattcagttcagcgtggacttattcaacaggaatacaggg- 241
Query: 196 ctatgtatcatgaggaactctcccaccgtatttcatctgaactcagtggaaaccacaaga 255
||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct: 242 ctatgtatcatgaggaactcttccatcgtatttcatctgaactcagtggaaaccacaaga 301
Query: 256 aagctatgtcgctgtggattcttgatcctgctggacgtgatgcaactgttttgagagaag 315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 aagctatgtcgctgtggattcttgatcctgctggacgtgatgcaactgttttgagagaag 361
Query: 316 ctctaaatggtgacactatggatctgagagcagccactgagattatatgttccaggacac 375
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 ctctaagcggtgacactatggatctgagagcagccactgagattatatgttccaggacac 421
Query: 376 catcacagttgcaaataatgaaacagacttattatgctagattcggtacttatcttgagc 435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 catcacagttgcaaataatgaaacagacttattatgctagattcggtacttatcttgagc 481
Query: 436 atgacattgctcaccacacatccggtgatcaccagaagcttttacttgcatatatgggga 495
||||||||| |||||||||||| || ||||||||||||||||||||||| ||| ||||||
Sbjct: 482 atgacattggtcaccacacatctggcgatcaccagaagcttttacttgcctatgtgggga 541
Query: 496 ttccacgctatgaaggtcccgaggttgatcctacaattgtgacacatgatgcaaaggatt 555
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct: 542 ttccacgctatgaaggtcctgaggttgatcctaccattgtgacacatgatgcaaaggatt 601
Query: 556 tgtacaaagctggtgagaaaaggctgggtacggacgagaagatttttatccgtgttttca 615
|||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct: 602 tgtacaaagctggtgagaaaaggctgggtacggatgagaagacctttatccgtgttttca 661
Query: 616 ctgaacgcagttgggcacacttggcatctgtttcttctgcttaccatcatatgtatgacc 675
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 ctgaacgcagttgggcacacttggcatctgtttcttctgcttaccatcatatgtatgacc 721
Query: 676 ggaaattagagaaggttatcaagagcgaaacttctggaaactttga 721
||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct: 722 ggaaattagagaaggttgtcaagagcgaaacatctggaaactttga 767
>gb|CN147054.1|CN147054 WOUND1_46_F06.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_46_F06_A002 5', mRNA sequence
Length = 792
Score = 1128 bits (569), Expect = 0.0
Identities = 651/677 (96%), Gaps = 1/677 (0%)
Strand = Plus / Plus
Query: 16 gcagcgactgccggcgatggcgagcctcaccctgccgccggcgccccccaacccacgcca 75
||||||| |||||||||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct: 113 gcagcgattgccggcgatggcgagcctcgccctgccgccggcgcccccgaacccacgcca 172
Query: 76 ggacgccatcgacctccacaaggccttcaaagggtttggatgtgacagtacaacagggat 135
||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||| |||
Sbjct: 173 ggacgccatcgacctccacaaggccttcaaagggtttggctgtgatagtacagcagtgat 232
Query: 136 aaacatacttactcatcgcgattcggggcagcgtggactcattcaacaggaatacagggt 195
|||||||||||||||||||||||| | ||||||||||| |||||||||||||||||||
Sbjct: 233 aaacatacttactcatcgcgattcagttcagcgtggacttattcaacaggaatacaggg- 291
Query: 196 ctatgtatcatgaggaactctcccaccgtatttcatctgaactcagtggaaaccacaaga 255
||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct: 292 ctatgtatcatgaggaactcttccatcgtatttcatctgaactcagtggaaaccacaaga 351
Query: 256 aagctatgtcgctgtggattcttgatcctgctggacgtgatgcaactgttttgagagaag 315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 aagctatgtcgctgtggattcttgatcctgctggacgtgatgcaactgttttgagagaag 411
Query: 316 ctctaaatggtgacactatggatctgagagcagccactgagattatatgttccaggacac 375
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 ctctaagcggtgacactatggatctgagagcagccactgagattatatgttccaggacac 471
Query: 376 catcacagttgcaaataatgaaacagacttattatgctagattcggtacttatcttgagc 435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 catcacagttgcaaataatgaaacagacttattatgctagattcggtacttatcttgagc 531
Query: 436 atgacattgctcaccacacatccggtgatcaccagaagcttttacttgcatatatgggga 495
||||||||| |||||||||||| || ||||||||||||||||||||||| ||| ||||||
Sbjct: 532 atgacattggtcaccacacatctggcgatcaccagaagcttttacttgcctatgtgggga 591
Query: 496 ttccacgctatgaaggtcccgaggttgatcctacaattgtgacacatgatgcaaaggatt 555
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct: 592 ttccacgctatgaaggtcctgaggttgatcctaccattgtgacacatgatgcaaaggatt 651
Query: 556 tgtacaaagctggtgagaaaaggctgggtacggacgagaagatttttatccgtgttttca 615
|||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct: 652 tgtacaaagctggtgagaaaaggctgggtacggatgagaagacctttatccgtgttttca 711
Query: 616 ctgaacgcagttgggcacacttggcatctgtttcttctgcttaccatcatatgtatgacc 675
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712 ctgaacgcagttgggcacacttggcatctgtttcttctgcttaccatcatatgtatgacc 771
Query: 676 ggaaattagagaaggtt 692
|||||||||||||||||
Sbjct: 772 ggaaattagagaaggtt 788
>gb|CX610292.1|CX610292 ANR1_17_F05.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_17_F05_A002 5', mRNA sequence
Length = 741
Score = 1106 bits (558), Expect = 0.0
Identities = 637/662 (96%), Gaps = 1/662 (0%)
Strand = Plus / Plus
Query: 16 gcagcgactgccggcgatggcgagcctcaccctgccgccggcgccccccaacccacgcca 75
||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 81 gcagcgattgccggcgatggcgagcctcaccctgccgccggcgcccccgaacccacgcca 140
Query: 76 ggacgccatcgacctccacaaggccttcaaagggtttggatgtgacagtacaacagggat 135
||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||| |||
Sbjct: 141 ggacgccatcgacctccacaaggccttcaaagggtttggctgtgatagtacagcagtgat 200
Query: 136 aaacatacttactcatcgcgattcggggcagcgtggactcattcaacaggaatacagggt 195
|||||||||||||||||||||||| | ||||||||||| |||||||||||||||||||
Sbjct: 201 aaacatacttactcatcgcgattcagttcagcgtggacttattcaacaggaatacaggg- 259
Query: 196 ctatgtatcatgaggaactctcccaccgtatttcatctgaactcagtggaaaccacaaga 255
||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct: 260 ctatgtatcatgaggaactcttccatcgtatttcatctgaactcagtggaaaccacaaga 319
Query: 256 aagctatgtcgctgtggattcttgatcctgctggacgtgatgcaactgttttgagagaag 315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 aagctatgtcgctgtggattcttgatcctgctggacgtgatgcaactgttttgagagaag 379
Query: 316 ctctaaatggtgacactatggatctgagagcagccactgagattatatgttccaggacac 375
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ctctaagcggtgacactatggatctgagagcagccactgagattatatgttccaggacac 439
Query: 376 catcacagttgcaaataatgaaacagacttattatgctagattcggtacttatcttgagc 435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 catcacagttgcaaataatgaaacagacttattatgctagattcggtacttatcttgagc 499
Query: 436 atgacattgctcaccacacatccggtgatcaccagaagcttttacttgcatatatgggga 495
||||||||| |||||||||||| || ||||||||||||||||||||||| ||| ||||||
Sbjct: 500 atgacattggtcaccacacatctggcgatcaccagaagcttttacttgcctatgtgggga 559
Query: 496 ttccacgctatgaaggtcccgaggttgatcctacaattgtgacacatgatgcaaaggatt 555
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct: 560 ttccacgctatgaaggtcctgaggttgatcctaccattgtgacacatgatgcaaaggatt 619
Query: 556 tgtacaaagctggtgagaaaaggctgggtacggacgagaagatttttatccgtgttttca 615
|||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct: 620 tgtacaaagctggtgagaaaaggctgggtacggatgagaagacctttatccgtgttttca 679
Query: 616 ctgaacgcagttgggcacacttggcatctgtttcttctgcttaccatcatatgtatgacc 675
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ctgaacgcagttgggcacacttggcatctgtttcttctgcttaccatcatatgtatgacc 739
Query: 676 gg 677
||
Sbjct: 740 gg 741
>gb|CN143855.1|CN143855 WOUND1_18_F12.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_18_F12_A002 5', mRNA sequence
Length = 699
Score = 1084 bits (547), Expect = 0.0
Identities = 635/663 (95%), Gaps = 1/663 (0%)
Strand = Plus / Plus
Query: 18 agcgactgccggcgatggcgagcctcaccctgccgccggcgccccccaacccacgccagg 77
||||| ||||||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct: 38 agcgattgccggcgatggcgagcctcaccctgccgccggtgcccccgaacccacgccagg 97
Query: 78 acgccatcgacctccacaaggccttcaaagggtttggatgtgacagtacaacagggataa 137
||||||||||||||||||||||||||||||||||||| ||||| |||||| ||| |||||
Sbjct: 98 acgccatcgacctccacaaggccttcaaagggtttggctgtgatagtacagcagtgataa 157
Query: 138 acatacttactcatcgcgattcggggcagcgtggactcattcaacaggaatacagggtct 197
|||||||||||||||||||||| | ||||||||||| ||||||||||||||||||| ||
Sbjct: 158 acatacttactcatcgcgattcagttcagcgtggacttattcaacaggaatacaggg-ct 216
Query: 198 atgtatcatgaggaactctcccaccgtatttcatctgaactcagtggaaaccacaagaaa 257
||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct: 217 atgtatcatgaggaactcttccatcgtatttcatctgaactcagtggaaaccacaagaaa 276
Query: 258 gctatgtcgctgtggattcttgatcctgctggacgtgatgcaactgttttgagagaagct 317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 gctatgtcgctgtggattcttgatcctgctggacgtgatgcaactgttttgagagaagct 336
Query: 318 ctaaatggtgacactatggatctgagagcagccactgagattatatgttccaggacacca 377
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 ctaagcggtgacactatggatctgagagcagccactgagattatatgttccaggacacca 396
Query: 378 tcacagttgcaaataatgaaacagacttattatgctagattcggtacttatcttgagcat 437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 tcacagttgcaaataatgaaacagacttattatgctagattcggtacttatcttgagcat 456
Query: 438 gacattgctcaccacacatccggtgatcaccagaagcttttacttgcatatatggggatt 497
||||||| |||||||||||| || ||||||||||||||||||||||| ||| ||||||||
Sbjct: 457 gacattggtcaccacacatctggcgatcaccagaagcttttacttgcctatgtggggatt 516
Query: 498 ccacgctatgaaggtcccgaggttgatcctacaattgtgacacatgatgcaaaggatttg 557
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct: 517 ccacgctatgaaggtcctgaggttgatcctaccattgtgacacatgatgcaaaggatttg 576
Query: 558 tacaaagctggtgagaaaaggctgggtacggacgagaagatttttatccgtgttttcact 617
||||||||||||||||||||||||||||| || ||||| | ||||||||||||||||||
Sbjct: 577 tacaaagctggtgagaaaaggctgggtactgatgagaaaacctttatccgtgttttcact 636
Query: 618 gaacgcagttgggcacacttggcatctgtttcttctgcttaccatcatatgtatgaccgg 677
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 gaacgcagttgggcacacttggcatctgtttcttctgcttaccatcatatgtatgaccgg 696
Query: 678 aaa 680
|||
Sbjct: 697 aaa 699
>gb|CD221150.1|CD221150 CCC1_73_G10.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_73_G10_A007 5', mRNA sequence
Length = 757
Score = 1082 bits (546), Expect = 0.0
Identities = 638/666 (95%), Gaps = 2/666 (0%)
Strand = Plus / Plus
Query: 16 gcagcgactgccggcgatggcgagcctcaccctgccgccggcgccccccaacccacgcca 75
||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 94 gcagcgattgccggcgatggcgagcctcaccctgccgccggcgcccccgaacccacgcca 153
Query: 76 ggacgccatcgacctccacaaggccttcaaagggtttggatgtgacagtacaacagggat 135
||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||| |||
Sbjct: 154 ggacgccatcgacctccacaaggccttcaaagggtttggctgtgatagtacagcagtgat 213
Query: 136 aaacatacttactcatcgcgattcggggcagcgtggactcattcaacaggaatacagggt 195
|||||||||||||||||||||||| | ||||||||||| |||||||||||||||||||
Sbjct: 214 aaacatacttactcatcgcgattcagttcagcgtggacttattcaacaggaatacaggg- 272
Query: 196 ctatgtatcatgaggaactctcccaccgtatttcatctgaactcagtggaaaccacaaga 255
||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct: 273 ctatgtatcatgaggaactcttccatcgtatttcatctgaactcagtggaaaccacaaga 332
Query: 256 aagctatgtcgctgtggattcttgatcctgctggacgtgatgcaactgttttgagagaag 315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 aagctatgtcgctgtggattcttgatcctgctggacgtgatgcaactgttttgagagaag 392
Query: 316 ctctaaatggtgacactatggatctgagagcagccactgagattatatgttccaggacac 375
|||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 393 ctctaagcggtgacactatggatctgagagcagccactgagataatatgttccaggacac 452
Query: 376 catcacagttgcaaataatgaaacagacttattatgctagattcggtacttatcttgagc 435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 catcacagttgcaaataatgaaacagacttattatgctagattcggtacttatcttgagc 512
Query: 436 atgacattgctcaccacacatccggtgatcaccagaagcttttacttgcatatatgggga 495
|||||| || |||||||||||| || ||||||||||||||||||||||| ||| ||||||
Sbjct: 513 atgacactggtcaccacacatctggcgatcaccagaagcttttacttgcctatgtgggga 572
Query: 496 ttccacgctatgaaggtcccgaggttgatcctacaattgtgacacatgatgcaaaggatt 555
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct: 573 ttccacgctatgaaggtcctgaggttgatcctaccattgtgacacatgatgcaaaggatt 632
Query: 556 tgtacaaagctggtgagaaaaggctgggtacggacgagaagatttttatccgtgttttca 615
|||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct: 633 tgtacaaagctggtgagaaaaggctgggtacggatgagaagacctttatccgtgttttca 692
Query: 616 ctgaacgcagttgggcacacttggcatctgtttcttctgcttaccatcatatgtatgacc 675
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 693 ctgaacgcagttgggcacacttggcatctgtttcttctgctta-catcatatgtatgacc 751
Query: 676 ggaaat 681
||||||
Sbjct: 752 ggaaat 757
>gb|CN138473.1|CN138473 OX1_64_B06.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_64_B06_A002 3', mRNA sequence
Length = 768
Score = 1017 bits (513), Expect = 0.0
Identities = 712/776 (91%), Gaps = 23/776 (2%)
Strand = Plus / Plus
Query: 502 gctatgaaggtcccgaggttgatcctacaattgtgacacatgatgcaaaggatttgtaca 561
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 1 gctatgaaggtcctgaggttgatcctaccattgtgacacatgatgcaaaggatttgtaca 60
Query: 562 aagctggtgagaaaaggctgggtacggacgagaagatttttatccgtgttttcactgaac 621
|||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct: 61 aagctggtgagaaaaggctgggtacggatgagaagacctttatccgtgttttcactgaac 120
Query: 622 gcagttgggcacacttggcatctgtttcttctgcttaccatcatatgtatgaccggaaat 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gcagttgggcacacttggcatctgtttcttctgcttaccatcatatgtatgaccggaaat 180
Query: 682 tagagaaggttatcaagagcgaaacttctggaaactttgaatttgcacttttgactatcc 741
||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 181 tagagaaggttgtcaagagcgaaacatctggaaactttgaatttgcacttttgactatcc 240
Query: 742 tcagatgcgcggaaaacccagcaaagtattttgctaagctcttacgaaaggccatgaaag 801
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 241 tcagatgcgcggaaaacccagcgaagtattttgctaagctcttacgaaaggccatgaaag 300
Query: 802 gtttaggcactgatgacatgacacttataagggtggtggtgacgaggaccgagattgaca 861
|||||||||| ||||| | |||||||| |||||| |||||||||||||| ||||||||||
Sbjct: 301 gtttaggcaccgatgagaagacacttacaagggtcgtggtgacgaggactgagattgaca 360
Query: 862 tgcaatatatcaaggcagagtacttgaagaagtataagaagccattagctgaggctatca 921
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 361 tgcaatatatcaaggcagagtacttcaagaagtataagaagccattagctgaggctatca 420
Query: 922 actccgagacatcaggaaactatcggacgttccttctttcacttgttggtcatggccatt 981
||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 421 actccgaaacatcaggaaactatcgggcgttccttctttcacttgttggtcatggccatt 480
Query: 982 aggctatgtttcgaccatgggacatgatatttctatcgatccaccctaaatgcagagacc 1041
|||||||||||||||||||||| |||||| ||| ||||||||||||||||||||| || |
Sbjct: 481 aggctatgtttcgaccatgggagatgata-ttccatcgatccaccctaaatgcagcgatc 539
Query: 1042 tacctggaaaacttatgatgttgccatttatctgtcgtgactcttgga----tctaactg 1097
|||| |||||||||||||| ||||||||||||||||||||||| |||| ||||||||
Sbjct: 540 taccgggaaaacttatgattttgccatttatctgtcgtgactcgtggattcgtctaactg 599
Query: 1098 ccacacatcacatatgcggttcctagtatgcttgtgtaaagtattcgtgtatatatttcc 1157
| |||||||| |||||||||||||||||| ||| ||||| ||||||||||||
Sbjct: 600 c-------cacatatgtggttcctagtatgcttgtctaatgtatttgtgtatatatttgg 652
Query: 1158 at-----ctgggtttcttgttggaagattctggatggggtaccagatcagctgttgctgg 1212
|| ||||||||||||||||| ||||||||||| | || || ||||||||||||
Sbjct: 653 attgaaagtgggtttcttgttggaaaattctggatggagcactag---agctgttgctgg 709
Query: 1213 tcacagtgggcttgcctgg---tgtctctatgacgccaatattattatgtcatgtt 1265
|||| ||||||||| || | |||||||||||| |||||| |||||||| |||||
Sbjct: 710 tcacggtgggcttgacttgacttgtctctatgacaccaataatattatgtaatgtt 765
>gb|CN147002.1|CN147002 WOUND1_46_F06.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_46_F06_A002 3', mRNA sequence
Length = 754
Score = 1009 bits (509), Expect = 0.0
Identities = 699/760 (91%), Gaps = 23/760 (3%)
Strand = Plus / Plus
Query: 518 ggttgatcctacaattgtgacacatgatgcaaaggatttgtacaaagctggtgagaaaag 577
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggttgatcctaccattgtgacacatgatgcaaaggatttgtacaaagctggtgagaaaag 60
Query: 578 gctgggtacggacgagaagatttttatccgtgttttcactgaacgcagttgggcacactt 637
|||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gctgggtacggatgagaagacctttatccgtgttttcactgaacgcagttgggcacactt 120
Query: 638 ggcatctgtttcttctgcttaccatcatatgtatgaccggaaattagagaaggttatcaa 697
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 121 ggcatctgtttcttctgcttaccatcatatgtatgaccggaaattagagaaggttgtcaa 180
Query: 698 gagcgaaacttctggaaactttgaatttgcacttttgactatcctcagatgcgcggaaaa 757
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gagcgaaacatctggaaactttgaatttgcacttttgactatcctcagatgcgcggaaaa 240
Query: 758 cccagcaaagtattttgctaagctcttacgaaaggccatgaaaggtttaggcactgatga 817
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 241 cccagcgaagtattttgctaagctcttacgaaaggccatgaaaggtttaggcaccgatga 300
Query: 818 catgacacttataagggtggtggtgacgaggaccgagattgacatgcaatatatcaaggc 877
| |||||||| |||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct: 301 gaagacacttacaagggtcgtggtgacgaggactgagattgacatgcaatatatcaaggc 360
Query: 878 agagtacttgaagaagtataagaagccattagctgaggctatcaactccgagacatcagg 937
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 361 agagtacttcaagaagtataagaagccattagctgaggctatcaactccgaaacatcagg 420
Query: 938 aaactatcggacgttccttctttcacttgttggtcatggccattaggctatgtttcgacc 997
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 aaactatcgggcgttccttctttcacttgttggtcatggccattaggctatgtttcgacc 480
Query: 998 atgggacatgatatttctatcgatccaccctaaatgcagagacctacctggaaaacttat 1057
|||||| |||||| ||| ||||||||||||||||||||| || ||||| |||||||||||
Sbjct: 481 atgggagatgata-ttccatcgatccaccctaaatgcagcgatctaccgggaaaacttat 539
Query: 1058 gatgttgccatttatctgtcgtgactcttgga----tctaactgccacacatcacatatg 1113
||||||||||||||||||||||||||| |||| ||||||||| ||||||||
Sbjct: 540 gatgttgccatttatctgtcgtgactcgtggattcgtctaactgc-------cacatatg 592
Query: 1114 cggttcctagtatgcttgtgtaaagtattcgtgtatatatttccat-----ctgggtttc 1168
|||||||||||||||||| ||| ||||| |||||||||||| || ||||||||
Sbjct: 593 tggttcctagtatgcttgtctaatgtatttgtgtatatatttggattgaaagtgggtttc 652
Query: 1169 ttgttggaagattctggatggggtaccagatcagctgttgctggtcacagtgggcttgcc 1228
||||||||| ||||||||||||| || || |||||||||||||||| ||||||||| |
Sbjct: 653 ttgttggaaaattctggatggggcactag---agctgttgctggtcacggtgggcttgac 709
Query: 1229 tgg---tgtctctatgacgccaatattattatgtcatgtt 1265
| | |||||||||||| |||||| |||||||| |||||
Sbjct: 710 ttgacttgtctctatgacaccaataatattatgtaatgtt 749
>gb|CN151636.1|CN151636 WOUND1_76_D10.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_76_D10_A002 5', mRNA sequence
Length = 682
Score = 995 bits (502), Expect = 0.0
Identities = 593/622 (95%), Gaps = 1/622 (0%)
Strand = Plus / Plus
Query: 16 gcagcgactgccggcgatggcgagcctcaccctgccgccggcgccccccaacccacgcca 75
||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 62 gcagcgattgccggcgatggcgagcctcaccctgccgccggcgcccccgaacccacgcca 121
Query: 76 ggacgccatcgacctccacaaggccttcaaagggtttggatgtgacagtacaacagggat 135
|||||||||||||||||||||| |||||||||||||||| ||||| |||||| ||| |||
Sbjct: 122 ggacgccatcgacctccacaagaccttcaaagggtttggctgtgatagtacagcagtgat 181
Query: 136 aaacatacttactcatcgcgattcggggcagcgtggactcattcaacaggaatacagggt 195
||||||||||||||||||||||| | ||||||||||| |||||||||||||||||||
Sbjct: 182 gaacatacttactcatcgcgattcagttcagcgtggacttattcaacaggaatacaggg- 240
Query: 196 ctatgtatcatgaggaactctcccaccgtatttcatctgaactcagtggaaaccacaaga 255
||||||||||||||||||||| ||| |||| |||||||||||||||||||||||||||||
Sbjct: 241 ctatgtatcatgaggaactcttccatcgtagttcatctgaactcagtggaaaccacaaga 300
Query: 256 aagctatgtcgctgtggattcttgatcctgctggacgtgatgcaactgttttgagagaag 315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 aagctatgtcgctgtggattcttgatcctgctggacgtgatgcaactgttttgagagaag 360
Query: 316 ctctaaatggtgacactatggatctgagagcagccactgagattatatgttccaggacac 375
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ctctaagcggtgacactatggatctgagagcagccactgagattatatgttccaggacac 420
Query: 376 catcacagttgcaaataatgaaacagacttattatgctagattcggtacttatcttgagc 435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 catcacagttgcaaataatgaaacagacttattatgctagattcggtacttatcttgagc 480
Query: 436 atgacattgctcaccacacatccggtgatcaccagaagcttttacttgcatatatgggga 495
||||||||| |||||||||||| || |||||||| |||||||||||||| ||| ||||||
Sbjct: 481 atgacattggtcaccacacatctggcgatcaccaaaagcttttacttgcctatgtgggga 540
Query: 496 ttccacgctatgaaggtcccgaggttgatcctacaattgtgacacatgatgcaaaggatt 555
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct: 541 ttccacgctatgaaggtcctgaggttgatcctaccattgtgacacatgatgcaaaggatt 600
Query: 556 tgtacaaagctggtgagaaaaggctgggtacggacgagaagatttttatccgtgttttca 615
|||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct: 601 tgtacaaagctggtgagaaaaggctgggtacggatgagaagacctttatccgtgttttca 660
Query: 616 ctgaacgcagttgggcacactt 637
||||||||||||||||||||||
Sbjct: 661 ctgaacgcagttgggcacactt 682
>gb|CX610206.1|CX610206 ANR1_17_F05.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_17_F05_A002 3', mRNA sequence
Length = 777
Score = 971 bits (490), Expect = 0.0
Identities = 680/741 (91%), Gaps = 23/741 (3%)
Strand = Plus / Plus
Query: 537 acacatgatgcaaaggatttgtacaaagctggtgagaaaaggctgggtacggacgagaag 596
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 1 acacatgatgcaaaggatttgtacaaagctggtgagaaaaggctgggtacggatgagaag 60
Query: 597 atttttatccgtgttttcactgaacgcagttgggcacacttggcatctgtttcttctgct 656
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 acctttatccgtgttttcactgaacgcagttgggcacacttggcatctgtttcttctgct 120
Query: 657 taccatcatatgtatgaccggaaattagagaaggttatcaagagcgaaacttctggaaac 716
|||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct: 121 taccatcatatgtatgaccggaaattagagaaggttgtcaagagcgaaacatctggaaac 180
Query: 717 tttgaatttgcacttttgactatcctcagatgcgcggaaaacccagcaaagtattttgct 776
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 181 tttgaatttgcacttttgactatcctcagatgcgcggaaaacccagcgaagtattttgct 240
Query: 777 aagctcttacgaaaggccatgaaaggtttaggcactgatgacatgacacttataagggtg 836
||||||||||||||||||||||||||||||||||| ||||| | |||||||| ||||||
Sbjct: 241 aagctcttacgaaaggccatgaaaggtttaggcaccgatgagaagacacttacaagggtc 300
Query: 837 gtggtgacgaggaccgagattgacatgcaatatatcaaggcagagtacttgaagaagtat 896
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 301 gtggtgacgaggactgagattgacatgcaatatatcaaggcagagtacttcaagaagtat 360
Query: 897 aagaagccattagctgaggctatcaactccgagacatcaggaaactatcggacgttcctt 956
|||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct: 361 aagaagccattagctgaggctatcaactccgaaacatcaggaaactatcgggcgttcctt 420
Query: 957 ctttcacttgttggtcatggccattaggctatgtttcgaccatgggacatgatatttcta 1016
||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| |
Sbjct: 421 ctttcacttgttggtcatggccattaggctatgtttcgaccatgggagatgata-ttcca 479
Query: 1017 tcgatccaccctaaatgcagagacctacctggaaaacttatgatgttgccatttatctgt 1076
|||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||
Sbjct: 480 tcgatccaccctaaatgcagcgatctaccgggaaaacttatgatgttgccatttatctgt 539
Query: 1077 cgtgactcttgga----tctaactgccacacatcacatatgcggttcctagtatgcttgt 1132
|||||||| |||| ||||||||| |||||||| ||||||||||||||||||
Sbjct: 540 cgtgactcgtggattcgtctaactgc-------cacatatgtggttcctagtatgcttgt 592
Query: 1133 gtaaagtattcgtgtatatatttccat-----ctgggtttcttgttggaagattctggat 1187
||| ||||| |||||||||||| || ||||||||||||||||| |||||||||
Sbjct: 593 ctaatgtatttgtgtatatatttggattgaaagtgggtttcttgttggaaaattctggat 652
Query: 1188 ggggtaccagatcagctgttgctggtcacagtgggcttgcctgg---tgtctctatgacg 1244
|| | || || |||||||||||||||| ||||||||| || | ||||||||||||
Sbjct: 653 ggagcactag---agctgttgctggtcacggtgggcttgacttgacttgtctctatgaca 709
Query: 1245 ccaatattattatgtcatgtt 1265
|||||| |||||||| |||||
Sbjct: 710 ccaataatattatgtaatgtt 730
>gb|CF433732.1|CF433732 NIT1_28_D12.g1_A002 Nitrogen-deficient seedlings Sorghum bicolor cDNA
clone NIT1_28_D12_A002 5', mRNA sequence
Length = 679
Score = 959 bits (484), Expect = 0.0
Identities = 601/639 (94%), Gaps = 12/639 (1%)
Strand = Plus / Minus
Query: 517 aggttgatcctacaattgtgacacatgatgcaaaggatttgtacaaagctggtgagaaaa 576
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 aggttgatcctaccattgtgacacatgatgcaaaggatttgtacaaagctggtgagaaaa 620
Query: 577 ggctgggtacggacgagaagatttttatccgtgttttcactgaacgcagttgggcacact 636
||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 619 ggctgggtacggatgagaagacctttatccgtgttttcactgaacgcagttgggcacact 560
Query: 637 tggcatctgtttcttctgcttaccatcatatgtatgaccggaaattagagaaggttatca 696
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 559 tggcatctgtttcttctgcttaccatcatatgtatgaccggaaattagagaaggttgtca 500
Query: 697 agagcgaaacttctggaaactttgaatttgcacttttgactatcctcagatgcgcggaaa 756
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 agagcgaaacatctggaaactttgaatttgcacttttgactatcctcagatgcgcggaaa 440
Query: 757 acccagcaaagtattttgctaagctcttacgaaaggccatgaaaggtttaggcactgatg 816
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 439 acccagcgaagtattttgctaagctcttacgaaaggccatgaaaggtttaggcaccgatg 380
Query: 817 acatgacacttataagggtggtggtgacgaggaccgagattgacatgcaatatatcaagg 876
| | |||||||| |||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct: 379 agaagacacttacaagggtcgtggtgacgaggactgagattgacatgcaatatatcaagg 320
Query: 877 cagagtacttgaagaagtataagaagccattagctgaggctatcaactccgagacatcag 936
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 319 cagagtacttcaagaagtataagaagccattagctgaggctatcaactccgaaacatcag 260
Query: 937 gaaactatcggacgttccttctttcacttgttggtcatggccattaggctatgtttcgac 996
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 gaaactatcgggcgttccttctttcacttgttggtcatggccattaggctatgtttcgac 200
Query: 997 catgggacatgatatttctatcgatccaccctaaatgcagagacctacctggaaaactta 1056
||||||| |||||| ||| ||||||||||||||||||||| || ||||| ||||||||||
Sbjct: 199 catgggagatgata-ttccatcgatccaccctaaatgcagcgatctaccgggaaaactta 141
Query: 1057 tgatgttgccatttatctgtcgtgactcttgga----tctaactgccacacatcacatat 1112
|||||||||||||||||||||||||||| |||| ||||||||| |||||||
Sbjct: 140 tgatgttgccatttatctgtcgtgactcgtggattcgtctaactgc-------cacatat 88
Query: 1113 gcggttcctagtatgcttgtgtaaagtattcgtgtatat 1151
| |||||||||||||||||| ||| ||||| ||||||||
Sbjct: 87 gtggttcctagtatgcttgtctaatgtatttgtgtatat 49
Score = 50.1 bits (25), Expect = 6e-004
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 1161 tgggtttcttgttggaagattctggatgg 1189
||||||||||||||||| |||||||||||
Sbjct: 34 tgggtttcttgttggaaaattctggatgg 6
>gb|CN133114.1|CN133114 OX1_10_E12.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_10_E12_A002 3', mRNA sequence
Length = 735
Score = 944 bits (476), Expect = 0.0
Identities = 640/693 (92%), Gaps = 20/693 (2%)
Strand = Plus / Plus
Query: 543 gatgcaaaggatttgtacaaagctggtgagaaaaggctgggtacggacgagaagattttt 602
||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct: 1 gatgcaaaggatttgtacaaagctggtgagaaaaggctgggtacggatgagaagaccttt 60
Query: 603 atccgtgttttcactgaacgcagttgggcacacttggcatctgtttcttctgcttaccat 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 atccgtgttttcactgaacgcagttgggcacacttggcatctgtttcttctgcttaccat 120
Query: 663 catatgtatgaccggaaattagagaaggttatcaagagcgaaacttctggaaactttgaa 722
|||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct: 121 catatgtatgaccggaaattagagaaggttgtcaagagcgaaacatctggaaactttgaa 180
Query: 723 tttgcacttttgactatcctcagatgcgcggaaaacccagcaaagtattttgctaagctc 782
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 181 tttgcacttttgactatcctcagatgcgcggaaaacccagcgaagtattttgctaagctc 240
Query: 783 ttacgaaaggccatgaaaggtttaggcactgatgacatgacacttataagggtggtggtg 842
||||||||||||||||||||||||||||| ||||| | |||||||| |||||| ||||||
Sbjct: 241 ttacgaaaggccatgaaaggtttaggcaccgatgagaagacacttacaagggtcgtggtg 300
Query: 843 acgaggaccgagattgacatgcaatatatcaaggcagagtacttgaagaagtataagaag 902
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 301 acgaggactgagattgacatgcaatatatcaaggcagagtacttcaagaagtataagaag 360
Query: 903 ccattagctgaggctatcaactccgagacatcaggaaactatcggacgttccttctttca 962
|||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct: 361 ccattagctgaggctatcaactccgaaacatcaggaaactatcgggcgttccttctttca 420
Query: 963 cttgttggtcatggccattaggctatgtttcgaccatgggacatgatatttctatcgatc 1022
||||||||||||||||||||||||||||||||||||||||| |||||| ||| |||||||
Sbjct: 421 cttgttggtcatggccattaggctatgtttcgaccatgggagatgata-ttccatcgatc 479
Query: 1023 caccctaaatgcagagacctacctggaaaacttatgatgttgccatttatctgtcgtgac 1082
|||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 480 caccctaaatgcagcgatctaccgggaaaacttatgatgttgccatttatctgtcgtgac 539
Query: 1083 tcttgga----tctaactgccacacatcacatatgcggttcctagtatgcttgtgtaaag 1138
|| |||| ||||||||| |||||||| |||||||||||||||||| ||| |
Sbjct: 540 tcgtggattcgtctaactgc-------cacatatgtggttcctagtatgcttgtctaatg 592
Query: 1139 tattcgtgtatatatttccat-----ctgggtttcttgttggaagattctggatggggta 1193
|||| |||||||||||| || ||||||||||||||||| ||||||||||| | |
Sbjct: 593 tatttgtgtatatatttggattgaaagtgggtttcttgttggaaaattctggatggagca 652
Query: 1194 ccagatcagctgttgctggtcacagtgggcttg 1226
| || |||||||||||||||| |||||||||
Sbjct: 653 ctag---agctgttgctggtcacggtgggcttg 682
>gb|CN143769.1|CN143769 WOUND1_18_F12.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_18_F12_A002 3', mRNA sequence
Length = 715
Score = 914 bits (461), Expect = 0.0
Identities = 654/716 (91%), Gaps = 23/716 (3%)
Strand = Plus / Plus
Query: 562 aagctggtgagaaaaggctgggtacggacgagaagatttttatccgtgttttcactgaac 621
|||||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||
Sbjct: 1 aagctggtgagaaaaggctgggtacggatgagaaaacctttatccgtgttttcactgaac 60
Query: 622 gcagttgggcacacttggcatctgtttcttctgcttaccatcatatgtatgaccggaaat 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gcagttgggcacacttggcatctgtttcttctgcttaccatcatatgtatgaccggaaat 120
Query: 682 tagagaaggttatcaagagcgaaacttctggaaactttgaatttgcacttttgactatcc 741
||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 121 tagagaaggttgtcaagagcgaaacatctggaaactttgaatttgcacttttgactatcc 180
Query: 742 tcagatgcgcggaaaacccagcaaagtattttgctaagctcttacgaaaggccatgaaag 801
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 181 tcagatgcgcggaaaacccagcgaagtattttgctaagctcttacgaaaggccatgaaag 240
Query: 802 gtttaggcactgatgacatgacacttataagggtggtggtgacgaggaccgagattgaca 861
|||||||||| ||||| | |||||||| |||||| |||||||||||||| ||||||||||
Sbjct: 241 gtttaggcaccgatgagaagacacttacaagggtcgtggtgacgaggactgagattgaca 300
Query: 862 tgcaatatatcaaggcagagtacttgaagaagtataagaagccattagctgaggctatca 921
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 301 tgcaatatatcaaggcagagtacttcaagaagtataagaagccattagctgaggctatca 360
Query: 922 actccgagacatcaggaaactatcggacgttccttctttcacttgttggtcatggccatt 981
||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 361 actccgaaacatcaggaaactatcgggcgttccttctttcacttgttggtcatggccatt 420
Query: 982 aggctatgtttcgaccatgggacatgatatttctatcgatccaccctaaatgcagagacc 1041
|||||||||||||||||||||| |||||| ||| ||||||||||||||||||||| || |
Sbjct: 421 aggctatgtttcgaccatgggagatgata-ttccatcgatccaccctaaatgcagcgatc 479
Query: 1042 tacctggaaaacttatgatgttgccatttatctgtcgtgactcttgga----tctaactg 1097
|||| |||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct: 480 taccgggaaaacttatgatgttgccatttatctgtcgtgactcgtggattcgtctaactg 539
Query: 1098 ccacacatcacatatgcggttcctagtatgcttgtgtaaagtattcgtgtatatatttcc 1157
| |||||||| |||||||||||||||||| ||| ||||| ||||||||||||
Sbjct: 540 c-------cacatatgtggttcctagtatgcttgtctaatgtatttgtgtatatatttgg 592
Query: 1158 at-----ctgggtttcttgttggaagattctggatggggtaccagatcagctgttgctgg 1212
|| ||||||||||||||||| ||||||||||| | || || ||||||||||||
Sbjct: 593 attgaaagtgggtttcttgttggaaaattctggatggagcactag---agctgttgctgg 649
Query: 1213 tcacagtgggcttgcctgg---tgtctctatgacgccaatattattatgtcatgtt 1265
|||| ||||||||| || | |||||||||||| |||||| |||||||| |||||
Sbjct: 650 tcacggtgggcttgacttgacttgtctctatgacaccaataatattatgtaatgtt 705
>gb|BE918701.1|BE918701 FM1_1_E05.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum propinquum
cDNA, mRNA sequence
Length = 632
Score = 908 bits (458), Expect = 0.0
Identities = 572/609 (93%), Gaps = 12/609 (1%)
Strand = Plus / Plus
Query: 551 ggatttgtacaaagctggtgagaaaaggctgggtacggacgagaagatttttatccgtgt 610
||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct: 1 ggatttgtacaaagctggtgagaaaaggctgggtacggatgagaagacctttatccgtgt 60
Query: 611 tttcactgaacgcagttgggcacacttggcatctgtttcttctgcttaccatcatatgta 670
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tttcactgaacgcagttgggcacacttggcatctgtttcttctgcttaccatcatatgta 120
Query: 671 tgaccggaaattagagaaggttatcaagagcgaaacttctggaaactttgaatttgcact 730
|||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct: 121 tgaccggaaattagagaaggttgtcaagagcgaaacatctggaaactttgaatttgcact 180
Query: 731 tttgactatcctcagatgcgcggaaaacccagcaaagtattttgctaagctcttacgaaa 790
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 181 tttgactatcctcagatgcgcggaaaacccagcgaagtattttgctaagctcttacgaaa 240
Query: 791 ggccatgaaaggtttaggcactgatgacatgacacttataagggtggtggtgacgaggac 850
||||||||||||||||||||| ||||| | |||||||| |||||| ||||||||||||||
Sbjct: 241 ggccatgaaaggtttaggcaccgatgagaagacacttacaagggtcgtggtgacgaggac 300
Query: 851 cgagattgacatgcaatatatcaaggcagagtacttgaagaagtataagaagccattagc 910
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 301 tgagattgacatgcaatatatcaaggcagagtacttcaagaagtataagaagccattagc 360
Query: 911 tgaggctatcaactccgagacatcaggaaactatcggacgttccttctttcacttgttgg 970
|||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct: 361 tgaggctatcaactccgaaacatcaggaaactatcgggcgttccttctttcacttgttgg 420
Query: 971 tcatggccattaggctatgtttcgaccatgggacatgatatttctatcgatccaccctaa 1030
||||||||||||||||||||||||||||||||| |||||| ||| |||||||||||||||
Sbjct: 421 tcatggccattaggctatgtttcgaccatgggagatgata-ttccatcgatccaccctaa 479
Query: 1031 atgcagagacctacctggaaaacttatgatgttgccatttatctgtcgtgactcttgga- 1089
|||||| || ||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 480 atgcagcgatctaccgggaaaacttatgatgttgccatttatctgtcgtgactcgtggat 539
Query: 1090 ---tctaactgccacacatcacatatgcggttcctagtatgcttgtgtaaagtattcgtg 1146
||||||||| |||||||| |||||||||||||||||| ||| ||||| |||
Sbjct: 540 tcgtctaactgc-------cacatatgtggttcctagtatgcttgtctaatgtatttgtg 592
Query: 1147 tatatattt 1155
|||||||||
Sbjct: 593 tatatattt 601
>gb|CD229015.1|CD229015 CCC1_11_B11.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_11_B11_A007 5', mRNA sequence
Length = 658
Score = 890 bits (449), Expect = 0.0
Identities = 519/541 (95%), Gaps = 1/541 (0%)
Strand = Plus / Plus
Query: 16 gcagcgactgccggcgatggcgagcctcaccctgccgccggcgccccccaacccacgcca 75
||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 119 gcagcgattgccggcgatggcgagcctcaccctgccgccggcgcccccgaacccacgcca 178
Query: 76 ggacgccatcgacctccacaaggccttcaaagggtttggatgtgacagtacaacagggat 135
||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||| |||
Sbjct: 179 ggacgccatcgacctccacaaggccttcaaagggtttggctgtgatagtacagcagtgat 238
Query: 136 aaacatacttactcatcgcgattcggggcagcgtggactcattcaacaggaatacagggt 195
|||||||||||||||||||||||| | ||||||||||| |||||||||||||||||||
Sbjct: 239 aaacatacttactcatcgcgattcagttcagcgtggacttattcaacaggaatacaggg- 297
Query: 196 ctatgtatcatgaggaactctcccaccgtatttcatctgaactcagtggaaaccacaaga 255
||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct: 298 ctatgtatcatgaggaactcttccatcgtatttcatctgaactcagtggaaaccacaaga 357
Query: 256 aagctatgtcgctgtggattcttgatcctgctggacgtgatgcaactgttttgagagaag 315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 aagctatgtcgctgtggattcttgatcctgctggacgtgatgcaactgttttgagagaag 417
Query: 316 ctctaaatggtgacactatggatctgagagcagccactgagattatatgttccaggacac 375
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 ctctaagcggtgacactatggatctgagagcagccactgagattatatgttccaggacac 477
Query: 376 catcacagttgcaaataatgaaacagacttattatgctagattcggtacttatcttgagc 435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 catcacagttgcaaataatgaaacagacttattatgctagattcggtacttatcttgagc 537
Query: 436 atgacattgctcaccacacatccggtgatcaccagaagcttttacttgcatatatgggga 495
||||||||| |||||||||||| || ||||||||||||||||||||||| ||| ||||||
Sbjct: 538 atgacattggtcaccacacatctggcgatcaccagaagcttttacttgcctatgtgggga 597
Query: 496 ttccacgctatgaaggtcccgaggttgatcctacaattgtgacacatgatgcaaaggatt 555
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct: 598 ttccacgctatgaaggtcctgaggttgatcctaccattgtgacacatgatgcaaaggatt 657
Query: 556 t 556
|
Sbjct: 658 t 658
>gb|BE918894.1|BE918894 FM1_1_E05.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 536
Score = 813 bits (410), Expect = 0.0
Identities = 474/494 (95%), Gaps = 1/494 (0%)
Strand = Plus / Plus
Query: 16 gcagcgactgccggcgatggcgagcctcaccctgccgccggcgccccccaacccacgcca 75
||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 44 gcagcgattgccggcgatggcgagcctcaccctgccgccggcgcccccgaacccacgcca 103
Query: 76 ggacgccatcgacctccacaaggccttcaaagggtttggatgtgacagtacaacagggat 135
||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||| |||
Sbjct: 104 ggacgccatcgacctccacaaggccttcaaagggtttggctgtgatagtacagcagtgat 163
Query: 136 aaacatacttactcatcgcgattcggggcagcgtggactcattcaacaggaatacagggt 195
|||||||||||||||||||||||| | ||||||||||| |||||||||||||||||||
Sbjct: 164 aaacatacttactcatcgcgattcagttcagcgtggacttattcaacaggaatacaggg- 222
Query: 196 ctatgtatcatgaggaactctcccaccgtatttcatctgaactcagtggaaaccacaaga 255
||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct: 223 ctatgtatcatgaggaactcttccatcgtatttcatctgaactcagtggaaaccacaaga 282
Query: 256 aagctatgtcgctgtggattcttgatcctgctggacgtgatgcaactgttttgagagaag 315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 aagctatgtcgctgtggattcttgatcctgctggacgtgatgcaactgttttgagagaag 342
Query: 316 ctctaaatggtgacactatggatctgagagcagccactgagattatatgttccaggacac 375
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 ctctaagcggtgacactatggatctgagagcagccactgagattatatgttccaggacac 402
Query: 376 catcacagttgcaaataatgaaacagacttattatgctagattcggtacttatcttgagc 435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 catcacagttgcaaataatgaaacagacttattatgctagattcggtacttatcttgagc 462
Query: 436 atgacattgctcaccacacatccggtgatcaccagaagcttttacttgcatatatgggga 495
||||||||| |||||||||||| || ||||||||||||||||||||||| ||| ||||||
Sbjct: 463 atgacattggtcaccacacatctggcgatcaccagaagcttttacttgcctatgtgggga 522
Query: 496 ttccacgctatgaa 509
||||||||||||||
Sbjct: 523 ttccacgctatgaa 536
>gb|CD204242.1|CD204242 HS1_4_C06.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA clone
HS1_4_C06_A012 5', mRNA sequence
Length = 552
Score = 807 bits (407), Expect = 0.0
Identities = 488/513 (95%), Gaps = 4/513 (0%)
Strand = Plus / Plus
Query: 1 gggcagcgcgcacgc---gcagcgactgccggcgatggcgagcctcaccctgccgccggc 57
|||| |||||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 41 gggccgcgcgcacgcgcagcagcgattgccggcgatggcgagcctcaccctgccgccggc 100
Query: 58 gccccccaacccacgccaggacgccatcgacctccacaaggccttcaaagggtttggatg 117
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 101 gcccccgaacccacgccaggacgccatcgacctccacaaggccttcaaagggtttggctg 160
Query: 118 tgacagtacaacagggataaacatacttactcatcgcgattcggggcagcgtggactcat 177
||| |||||| ||| ||||||||||||||||||||||||||| | ||||||||||| ||
Sbjct: 161 tgatagtacagcagtgataaacatacttactcatcgcgattcagttcagcgtggacttat 220
Query: 178 tcaacaggaatacagggtctatgtatcatgaggaactctcccaccgtatttcatctgaac 237
||||||||||||||||| ||||||||||||||||||||| ||| ||||||||||||||||
Sbjct: 221 tcaacaggaatacaggg-ctatgtatcatgaggaactcttccatcgtatttcatctgaac 279
Query: 238 tcagtggaaaccacaagaaagctatgtcgctgtggattcttgatcctgctggacgtgatg 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 tcagtggaaaccacaagaaagctatgtcgctgtggattcttgatcctgctggacgtgatg 339
Query: 298 caactgttttgagagaagctctaaatggtgacactatggatctgagagcagccactgaga 357
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 340 caactgttttgagagaagctctaagcggtgacactatggatctgagagcagccactgaga 399
Query: 358 ttatatgttccaggacaccatcacagttgcaaataatgaaacagacttattatgctagat 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 ttatatgttccaggacaccatcacagttgcaaataatgaaacagacttattatgctagat 459
Query: 418 tcggtacttatcttgagcatgacattgctcaccacacatccggtgatcaccagaagcttt 477
||||||||||||||||||||||||||| |||||||||||| || ||||||||||||||||
Sbjct: 460 tcggtacttatcttgagcatgacattggtcaccacacatctggcgatcaccagaagcttt 519
Query: 478 tacttgcatatatggggattccacgctatgaag 510
|||| || ||| |||||||||||||||||||||
Sbjct: 520 tactcgcctatgtggggattccacgctatgaag 552
>gb|CF433592.1|CF433592 NIT1_28_D12.b1_A002 Nitrogen-deficient seedlings Sorghum bicolor cDNA
clone NIT1_28_D12_A002 3', mRNA sequence
Length = 627
Score = 769 bits (388), Expect = 0.0
Identities = 569/627 (90%), Gaps = 23/627 (3%)
Strand = Plus / Plus
Query: 651 tctgcttaccatcatatgtatgaccggaaattagagaaggttatcaagagcgaaacttct 710
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct: 1 tctgcttaccatcatatgtatgaccggaaattagagaaggttgtcaagagcgaaacatct 60
Query: 711 ggaaactttgaatttgcacttttgactatcctcagatgcgcggaaaacccagcaaagtat 770
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 61 ggaaactttgaatttgcacttttgactatcctcagatgcgcggaaaacccagcgaagtat 120
Query: 771 tttgctaagctcttacgaaaggccatgaaaggtttaggcactgatgacatgacacttata 830
||||||||||||||||||||||||||||||||||||||||| ||||| | |||||||| |
Sbjct: 121 tttgctaagctcttacgaaaggccatgaaaggtttaggcaccgatgagaagacacttaca 180
Query: 831 agggtggtggtgacgaggaccgagattgacatgcaatatatcaaggcagagtacttgaag 890
||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct: 181 agggtcgtggtgacgaggactgagattgacatgcaatatatcaaggcagagtacttcaag 240
Query: 891 aagtataagaagccattagctgaggctatcaactccgagacatcaggaaactatcggacg 950
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct: 241 aagtataagaagccattagctgaggctatcaactccgaaacatcaggaaactatcgggcg 300
Query: 951 ttccttctttcacttgttggtcatggccattaggctatgtttcgaccatgggacatgata 1010
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 301 ttccttctttcacttgttggtcatggccattaggctatgtttcgaccatgggagatgata 360
Query: 1011 tttctatcgatccaccctaaatgcagagacctacctggaaaacttatgatgttgccattt 1070
||| ||||||||||||||||||||| || ||||| ||||||||||||||||||||||||
Sbjct: 361 -ttccatcgatccaccctaaatgcagcgatctaccgggaaaacttatgatgttgccattt 419
Query: 1071 atctgtcgtgactcttgga----tctaactgccacacatcacatatgcggttcctagtat 1126
|||||||||||||| |||| ||||||||| |||||||| ||||||||||||
Sbjct: 420 atctgtcgtgactcgtggattcgtctaactgc-------cacatatgtggttcctagtat 472
Query: 1127 gcttgtgtaaagtattcgtgtatatatttccat-----ctgggtttcttgttggaagatt 1181
|||||| ||| ||||| |||||||||||| || ||||||||||||||||| |||
Sbjct: 473 gcttgtctaatgtatttgtgtatatatttggattgaaagtgggtttcttgttggaaaatt 532
Query: 1182 ctggatggggtaccagatcagctgttgctggtcacagtgggcttgcctgg---tgtctct 1238
|||||||| | || || |||||||||||||||| ||||||||| || | |||||||
Sbjct: 533 ctggatggagcactag---agctgttgctggtcacggtgggcttgacttgacttgtctct 589
Query: 1239 atgacgccaatattattatgtcatgtt 1265
||||| |||||| |||||||| |||||
Sbjct: 590 atgacaccaataatattatgtaatgtt 616
>gb|CD221042.1|CD221042 CCC1_73_G10.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_73_G10_A007 3', mRNA sequence
Length = 650
Score = 751 bits (379), Expect = 0.0
Identities = 560/618 (90%), Gaps = 23/618 (3%)
Strand = Plus / Plus
Query: 660 catcatatgtatgaccggaaattagagaaggttatcaagagcgaaacttctggaaacttt 719
||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct: 1 catcatatgtatgaccggaaattagagaaggttgtcaagagcgaaacatctggaaacttt 60
Query: 720 gaatttgcacttttgactatcctcagatgcgcggaaaacccagcaaagtattttgctaag 779
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 61 gaatttgcacttttgactatcctcagatgcgcggaaaacccagcgaagtattttgctaag 120
Query: 780 ctcttacgaaaggccatgaaaggtttaggcactgatgacatgacacttataagggtggtg 839
|||||||||||||||||||||||||||||||| ||||| | |||||||| |||||| |||
Sbjct: 121 ctcttacgaaaggccatgaaaggtttaggcaccgatgagaagacacttacaagggtcgtg 180
Query: 840 gtgacgaggaccgagattgacatgcaatatatcaaggcagagtacttgaagaagtataag 899
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 181 gtgacgaggactgagattgacatgcaatatatcaaggcagagtacttcaagaagtataag 240
Query: 900 aagccattagctgaggctatcaactccgagacatcaggaaactatcggacgttccttctt 959
||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct: 241 aagccattagctgaggctatcaactccgaaacatcaggaaactatcgggcgttccttctt 300
Query: 960 tcacttgttggtcatggccattaggctatgtttcgaccatgggacatgatatttctatcg 1019
|||||||||||||||||||||||||||||||||||||||||||| |||||| ||| ||||
Sbjct: 301 tcacttgttggtcatggccattaggctatgtttcgaccatgggagatgata-ttccatcg 359
Query: 1020 atccaccctaaatgcagagacctacctggaaaacttatgatgttgccatttatctgtcgt 1079
||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||
Sbjct: 360 atccaccctaaatgcagcgatctaccgggaaaacttatgatgttgccatttatctgtcgt 419
Query: 1080 gactcttgga----tctaactgccacacatcacatatgcggttcctagtatgcttgtgta 1135
||||| |||| ||||||||| |||||||| |||||||||||||||||| ||
Sbjct: 420 gactcgtggattcgtctaactgc-------cacatatgtggttcctagtatgcttgtcta 472
Query: 1136 aagtattcgtgtatatatttccat-----ctgggtttcttgttggaagattctggatggg 1190
| ||||| |||||||||||| || ||||||||||||||||| |||||||||||
Sbjct: 473 atgtatttgtgtatatatttggattgaaagtgggtttcttgttggaaaattctggatgga 532
Query: 1191 gtaccagatcagctgttgctggtcacagtgggcttgcctgg---tgtctctatgacgcca 1247
| || || |||||||||||||||| ||||||||| || | |||||||||||| |||
Sbjct: 533 gcactag---agctgttgctggtcacggtgggcttgacttgacttgtctctatgacacca 589
Query: 1248 atattattatgtcatgtt 1265
||| |||||||| |||||
Sbjct: 590 ataatattatgtaatgtt 607
>gb|BF657373.1|BF657373 OV2_24_C06.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA sequence
Length = 614
Score = 724 bits (365), Expect = 0.0
Identities = 567/628 (90%), Gaps = 26/628 (4%)
Strand = Plus / Plus
Query: 644 tgtttcttctgcttaccatcatatgtatgaccggaaattagagaaggttatcaagagcga 703
|||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct: 1 tgtttcttctgcttaccatcatatgtatgaccggaaat-agagaaggtg-tcaagagcga 58
Query: 704 aacttctggaaactttgaatttgcacttttgactatcctcagatgcgcggaaaacccagc 763
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59 aacatctggaaactttgaatttgcacttttgactatcctcagatgcgcggaaaacccagc 118
Query: 764 aaagtattttgctaagctcttacgaaaggccatgaaaggtttaggcactgatgacatgac 823
||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||
Sbjct: 119 gaagtattttgctaagctcttacgaaaggccatgaaaggtttaggcaccgatgagaagac 178
Query: 824 acttataagggtggtggtgacgaggaccgagattgacatgcaatatatcaaggcagagta 883
||||| |||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 179 acttacaagggtcgtggtgacgaggactgagattgacatgcaatatatcaaggcagagta 238
Query: 884 cttgaagaagtataagaagccattagctgaggctatcaactccgagacatcaggaaacta 943
||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct: 239 cttcaagaagtataagaagccattagctgaggctatcaactccgaaacatcaggaaacaa 298
Query: 944 tcggacgttccttctttcacttgttggtcatggccattaggctatgtttcgaccatggga 1003
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 tcgggcgttccttctttcacttgttggtcatggccattaggctatgtttcgaccatggga 358
Query: 1004 catgatatttctatcgatccaccctaaatgcagagacctacctggaaaacttatgatgtt 1063
|||||| ||| ||||||||||||||||||||| || ||||| |||||||||||||||||
Sbjct: 359 gatgata-ttccatcgatccaccctaaatgcagcgatctaccgggaaaacttatgatgtt 417
Query: 1064 gccatttatctgtcgtgactcttgga----tctaactgccacacatcacatatgcggttc 1119
||||||||||||||||||||| |||| ||||||||| |||||||| |||||
Sbjct: 418 gccatttatctgtcgtgactcgtggattcgtctaactgc-------cacatatgtggttc 470
Query: 1120 ctagtatgcttgtgtaaagtattcgtgtatatatttccat-----ctgggtttcttgttg 1174
||||||||||||| ||| ||||| |||||||||||| || |||||||||||||
Sbjct: 471 ctagtatgcttgtctaatgtatttgtgtatatatttggattgaaagtgggtttcttgtt- 529
Query: 1175 gaagattctggatggggtaccagatcagctgttgctggtcacagtgggcttgcctgg--- 1231
||| ||||||||||| | || || |||||||||||||||| ||||||||| || |
Sbjct: 530 gaaaattctggatggagcactag---agctgttgctggtcacggtgggcttgacttgact 586
Query: 1232 tgtctctatgacgccaatattattatgt 1259
|||||||||||| |||||| ||||||||
Sbjct: 587 tgtctctatgacaccaataatattatgt 614
>gb|CD204136.1|CD204136 HS1_4_C06.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA clone
HS1_4_C06_A012 3', mRNA sequence
Length = 537
Score = 567 bits (286), Expect = e-159
Identities = 477/537 (88%), Gaps = 24/537 (4%)
Strand = Plus / Plus
Query: 741 ctcagatgcgcggaaaacccagcaaagtattttgctaagctcttacgaaaggccatgaaa 800
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctcagatgcgcggaaaacccagcgaagtattttgctaagctcttacgaaaggccatgaaa 60
Query: 801 ggtttaggcactgatgacatgacacttataagggtggtggtgacgaggaccgagattgac 860
||||||||||| ||||| | |||||||| |||||| |||||||||||||| |||||||||
Sbjct: 61 ggtttaggcaccgatgagaagacacttacaagggtcgtggtgacgaggactgagattgac 120
Query: 861 atgcaatatatcaaggcagagtacttgaagaagtataagaagccattagctgaggctatc 920
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 121 atgcaatatatcaaggcagagtacttcaagaagtataagaagccattagctgaggctatc 180
Query: 921 aactccgagacatcaggaaactatcggacgttccttctttcacttgttggtcatggccat 980
|||||||| || ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 181 aactccgaaacttcaggaaactatcgggcgttccttctttcacttgttggtcatggccac 240
Query: 981 taggctatgtttcgaccatgggacatgatatttctatcgatccaccctaaatgcagagac 1040
||||||| ||||||||||||||| |||||| ||| |||||| |||||||||||||| ||
Sbjct: 241 taggctaggtttcgaccatgggagatgata-ttccatcgattcaccctaaatgcagcgat 299
Query: 1041 ctacctggaaaacttatgatgttgccatttatctgtcgtgactcttgga----tctaact 1096
||||| |||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct: 300 ctaccaggaaaacttatgatgttgccatttatctgtcgtgactcgtggattcgtctaact 359
Query: 1097 gccacacatcacatatgcggttcctagtatgcttgtgtaaagtattcgtgtatatatttc 1156
||| | ||||| |||||| ||||||||||| ||| ||||||||||||||||||
Sbjct: 360 gccgc-------atatgtggttcccagtatgcttgtctaatgtattcgtgtatatatttg 412
Query: 1157 cat-----ctgggtttcttgttggaagattctggatggggtaccagatcagctgttgctg 1211
|| |||||||||||||||||| ||||||||||||| || | |||||||||||
Sbjct: 413 gattgaaactgggtttcttgttggaaaattctggatgggg---cata-gagctgttgctg 468
Query: 1212 gtcacagtgggcttgcctgg---tgtctctatgacgccaatattattatgtcatgtt 1265
||||| ||||||||| || | |||||||||||| |||||| |||||||| |||||
Sbjct: 469 gtcacggtgggcttgacttgacttgtctctatgacaccaataatattatgtaatgtt 525
>gb|AW287541.2|AW287541 LG1_242_D02.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 412
Score = 549 bits (277), Expect = e-154
Identities = 329/345 (95%), Gaps = 1/345 (0%)
Strand = Plus / Plus
Query: 16 gcagcgactgccggcgatggcgagcctcaccctgccgccggcgccccccaacccacgcca 75
||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 69 gcagcgattgccggcgatggcgagcctcaccctgccgccggcgcccccgaacccacgcca 128
Query: 76 ggacgccatcgacctccacaaggccttcaaagggtttggatgtgacagtacaacagggat 135
|||||||||||||| |||||||||||||||||||||||| ||||| |||||| ||| |||
Sbjct: 129 ggacgccatcgacccccacaaggccttcaaagggtttggctgtgatagtacagcagtgat 188
Query: 136 aaacatacttactcatcgcgattcggggcagcgtggactcattcaacaggaatacagggt 195
|||||||||||||||||||||||| | ||||||||||| |||||||||||||||||||
Sbjct: 189 aaacatacttactcatcgcgattcagttcagcgtggacttattcaacaggaatacaggg- 247
Query: 196 ctatgtatcatgaggaactctcccaccgtatttcatctgaactcagtggaaaccacaaga 255
||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct: 248 ctatgtatcatgaggaactcttccatcgtatttcatctgaactcagtggaaaccacaaga 307
Query: 256 aagctatgtcgctgtggattcttgatcctgctggacgtgatgcaactgttttgagagaag 315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 aagctatgtcgctgtggattcttgatcctgctggacgtgatgcaactgttttgagagaag 367
Query: 316 ctctaaatggtgacactatggatctgagagcagccactgagatta 360
|||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 368 ctctaagcggtgacactatggatctgagagcagccactgagatta 412
>gb|BG103529.1|BG103529 RHIZ2_37_F06.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 556
Score = 543 bits (274), Expect = e-152
Identities = 329/346 (95%), Gaps = 1/346 (0%)
Strand = Plus / Plus
Query: 745 gatgcgcggaaaacccagcaaagtattttgctaagctcttacgaaaggccatgaaaggtt 804
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gatgcgcggaaaacccagcaaagtattttgctaagctcttacgaaaggccatgaaaggtt 60
Query: 805 taggcactgatgacatgacacttataagggtggtggtgacgaggaccgagattgacatgc 864
||||||| ||||| | |||||||| |||||| |||||||||||||| |||||||||||||
Sbjct: 61 taggcaccgatgagaagacacttacaagggtcgtggtgacgaggactgagattgacatgc 120
Query: 865 aatatatcaaggcagagtacttgaagaagtataagaagccattagctgaggctatcaact 924
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct: 121 aatatatcaaggcagagtacttcaagaaatataagaagccattagctgaggctatcaact 180
Query: 925 ccgagacatcaggaaactatcggacgttccttctttcacttgttggtcatggccattagg 984
|||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 181 ccgaaacatcaggaaactatcgggcgttccttctttcacttgttggtcatggccattagg 240
Query: 985 ctatgtttcgaccatgggacatgatatttctatcgatccaccctaaatgcagagacctac 1044
||||||||||||||||||| |||||| ||| ||||||||||||||||||||| || ||||
Sbjct: 241 ctatgtttcgaccatgggagatgata-ttccatcgatccaccctaaatgcagcgatctac 299
Query: 1045 ctggaaaacttatgatgttgccatttatctgtcgtgactcttggat 1090
| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 300 caggaaaacttatgatgttgccatttatctgtcgtgactcgtggat 345
Score = 69.9 bits (35), Expect = 6e-010
Identities = 137/167 (82%), Gaps = 13/167 (7%)
Strand = Plus / Plus
Query: 1108 catatgcggttcctagtatgcttgtgtaaa-gtattcgtgtatatatttccat-----ct 1161
|||||| |||||| |||||| | |||| || |||||||||||||||||| || ||
Sbjct: 360 catatgtggttcccagtatgatggtgttaatgtattcgtgtatatatttggattgaaact 419
Query: 1162 gggtttcttgttggaagattctggatggggtaccagatcagctgttgctggtcacagtgg 1221
|||||||||||||||| ||||||||||||| || | ||||| |||||||||| ||||
Sbjct: 420 gggtttcttgttggaaaattctggatgggg---cata-gagctgatgctggtcacggtgg 475
Query: 1222 gcttgcctgg---tgtctctatgacgccaatattattatgtcatgtt 1265
||||| || | ||||||| ||||||||||| |||||||| |||||
Sbjct: 476 gcttgacttgacttgtctctgtgacgccaataatattatgtaatgtt 522
>gb|BF657447.1|BF657447 OV2_24_C06.b1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 339
Score = 452 bits (228), Expect = e-125
Identities = 271/284 (95%), Gaps = 1/284 (0%)
Strand = Plus / Plus
Query: 16 gcagcgactgccggcgatggcgagcctcaccctgccgccggcgccccccaacccacgcca 75
||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 57 gcagcgattgccggcgatggcgagcctcaccctgccgccggcgcccccgaacccacgcca 116
Query: 76 ggacgccatcgacctccacaaggccttcaaagggtttggatgtgacagtacaacagggat 135
||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||| |||
Sbjct: 117 ggacgccatcgacctccacaaggccttcaaagggtttggctgtgatagtacagcagtgat 176
Query: 136 aaacatacttactcatcgcgattcggggcagcgtggactcattcaacaggaatacagggt 195
|||||||||||||||||||||||| | ||||||||||| |||||||||||||||||||
Sbjct: 177 aaacatacttactcatcgcgattcagttcagcgtggacttattcaacaggaatacaggg- 235
Query: 196 ctatgtatcatgaggaactctcccaccgtatttcatctgaactcagtggaaaccacaaga 255
||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct: 236 ctatgtatcatgaggaactcttccatcgtatttcatctgaactcagtggaaaccacaaga 295
Query: 256 aagctatgtcgctgtggattcttgatcctgctggacgtgatgca 299
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 aagctatgtcgctgtggattcttgatcctgctggacgtgatgca 339
>gb|BE918813.1|BE918813 FM1_2_C09.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 239
Score = 347 bits (175), Expect = 2e-093
Identities = 223/239 (93%)
Strand = Plus / Plus
Query: 755 aaacccagcaaagtattttgctaagctcttacgaaaggccatgaaaggtttaggcactga 814
||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 1 aaacccagcgaagtattttgctaagctcttacgaaaggccatgaaaggtttaggctccga 60
Query: 815 tgacatgacacttataagggtggtggtgacgaggaccgagattgacatgcaatatatcaa 874
||| | |||||||| |||||| |||||| ||||||| || ||| ||||||||||||||||
Sbjct: 61 tgagaagacacttacaagggttgtggtgccgaggactgacattcacatgcaatatatcaa 120
Query: 875 ggcagagtacttgaagaagtataagaagccattagctgaggctatcaactccgagacatc 934
|||||||||||| |||||||||||| |||||||||||||||||||||||||| | |||||
Sbjct: 121 ggcagagtacttcaagaagtataagcagccattagctgaggctatcaactcctaaacatc 180
Query: 935 aggaaactatcggacgttccttctttcacttgttggtcatggccattaggctatgtttc 993
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aggaaactatcgggcgttccttctttcacttgttggtcatggccattaggctatgtttc 239
>gb|CW254138.1|CW254138 104_718_11225499_116_35120_014 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11225499, DNA
sequence
Length = 716
Score = 339 bits (171), Expect = 4e-091
Identities = 198/207 (95%)
Strand = Plus / Plus
Query: 778 agctcttacgaaaggccatgaaaggtttaggcactgatgacatgacacttataagggtgg 837
|||||||||||||||||||||||||||||||||| ||||| | |||||||| |||||| |
Sbjct: 304 agctcttacgaaaggccatgaaaggtttaggcaccgatgagaagacacttacaagggtcg 363
Query: 838 tggtgacgaggaccgagattgacatgcaatatatcaaggcagagtacttgaagaagtata 897
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 364 tggtgacgaggactgagattgacatgcaatatatcaaggcagagtacttcaagaagtata 423
Query: 898 agaagccattagctgaggctatcaactccgagacatcaggaaactatcggacgttccttc 957
||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||
Sbjct: 424 agaagccattagctgaggctatcaactccgaaacatcaggaaactatcgggcgttccttc 483
Query: 958 tttcacttgttggtcatggccattagg 984
|||||||||||||||||||||||||||
Sbjct: 484 tttcacttgttggtcatggccattagg 510
Score = 153 bits (77), Expect = 6e-035
Identities = 102/109 (93%), Gaps = 1/109 (0%)
Strand = Plus / Plus
Query: 982 aggctatgtttcgaccatgggacatgatatttctatcgatccaccctaaatgcagagacc 1041
|||||||||||||||||||||| |||||||| | ||||||||||||||||||||| || |
Sbjct: 588 aggctatgtttcgaccatgggagatgatattcc-atcgatccaccctaaatgcagcgatc 646
Query: 1042 tacctggaaaacttatgatgttgccatttatctgtcgtgactcttggat 1090
|||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 647 taccgggaaaacttatgatgttgccatttatctgtcgtgactcgtggat 695
>gb|CW254139.1|CW254139 104_718_11225499_148_35116_014 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11225499, DNA
sequence
Length = 671
Score = 339 bits (171), Expect = 4e-091
Identities = 198/207 (95%)
Strand = Plus / Plus
Query: 778 agctcttacgaaaggccatgaaaggtttaggcactgatgacatgacacttataagggtgg 837
|||||||||||||||||||||||||||||||||| ||||| | |||||||| |||||| |
Sbjct: 304 agctcttacgaaaggccatgaaaggtttaggcaccgatgagaagacacttacaagggtcg 363
Query: 838 tggtgacgaggaccgagattgacatgcaatatatcaaggcagagtacttgaagaagtata 897
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 364 tggtgacgaggactgagattgacatgcaatatatcaaggcagagtacttcaagaagtata 423
Query: 898 agaagccattagctgaggctatcaactccgagacatcaggaaactatcggacgttccttc 957
||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||
Sbjct: 424 agaagccattagctgaggctatcaactccgaaacatcaggaaactatcgggcgttccttc 483
Query: 958 tttcacttgttggtcatggccattagg 984
|||||||||||||||||||||||||||
Sbjct: 484 tttcacttgttggtcatggccattagg 510
Score = 105 bits (53), Expect = 1e-020
Identities = 78/85 (91%), Gaps = 1/85 (1%)
Strand = Plus / Plus
Query: 982 aggctatgtttcgaccatgggacatgatatttctatcgatccaccctaaatgcagagacc 1041
|||||||||||||||||||||| |||||||| | |||||||||||| |||||||| || |
Sbjct: 588 aggctatgtttcgaccatgggagatgatattcc-atcgatccaccccaaatgcagcgatc 646
Query: 1042 tacctggaaaacttatgatgttgcc 1066
|||| ||||||||||||||||||||
Sbjct: 647 taccgggaaaacttatgatgttgcc 671
>gb|CW408253.1|CW408253 fsbb001f102b05f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f102b05, DNA
sequence
Length = 700
Score = 339 bits (171), Expect = 4e-091
Identities = 198/207 (95%)
Strand = Plus / Plus
Query: 778 agctcttacgaaaggccatgaaaggtttaggcactgatgacatgacacttataagggtgg 837
|||||||||||||||||||||||||||||||||| ||||| | |||||||| |||||| |
Sbjct: 94 agctcttacgaaaggccatgaaaggtttaggcaccgatgagaagacacttacaagggtcg 153
Query: 838 tggtgacgaggaccgagattgacatgcaatatatcaaggcagagtacttgaagaagtata 897
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 154 tggtgacgaggactgagattgacatgcaatatatcaaggcagagtacttcaagaagtata 213
Query: 898 agaagccattagctgaggctatcaactccgagacatcaggaaactatcggacgttccttc 957
||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||
Sbjct: 214 agaagccattagctgaggctatcaactccgaaacatcaggaaactatcgggcgttccttc 273
Query: 958 tttcacttgttggtcatggccattagg 984
|||||||||||||||||||||||||||
Sbjct: 274 tttcacttgttggtcatggccattagg 300
Score = 204 bits (103), Expect = 2e-050
Identities = 245/290 (84%), Gaps = 23/290 (7%)
Strand = Plus / Plus
Query: 982 aggctatgtttcgaccatgggacatgatatttctatcgatccaccctaaatgcagagacc 1041
|||||||||||||||||||||| |||||||| | ||||||||||||||||||||| || |
Sbjct: 378 aggctatgtttcgaccatgggagatgatattcc-atcgatccaccctaaatgcagcgatc 436
Query: 1042 tacctggaaaacttatgatgttgccatttatctgtcgtgactcttgga----tctaactg 1097
|||| |||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct: 437 taccgggaaaacttatgatgttgccatttatctgtcgtgactcgtggattcgtctaactg 496
Query: 1098 ccacacatcacatatgcggttcctagtatgcttgtgtaaagtattcgtgtatatatttcc 1157
| |||||||| |||||||||||||||||| ||| ||||| ||||||||||||
Sbjct: 497 c-------cacatatgtggttcctagtatgcttgtctaatgtatttgtgtatatatttgg 549
Query: 1158 at-----ctgggtttcttgttggaagattctggatggggtaccagatcagctgttgctgg 1212
|| ||||||||||||||||| ||||||||||| | || || ||||||||||||
Sbjct: 550 attgaaagtgggtttcttgttggaaaattctggatggagcactag---agctgttgctgg 606
Query: 1213 tcacagtgggcttgcctgg---tgtctctatgacgccaatattattatgt 1259
|||| ||||||||| || | |||||||||||| |||||| ||||||||
Sbjct: 607 tcacggtgggcttgacttgacttgtctctatgacaccaataatattatgt 656
>gb|CW175197.1|CW175197 104_587_11157809_148_36838_069 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11157809, DNA
sequence
Length = 736
Score = 190 bits (96), Expect = 3e-046
Identities = 241/287 (83%), Gaps = 23/287 (8%)
Strand = Plus / Minus
Query: 991 ttcgaccatgggacatgatatttctatcgatccaccctaaatgcagagacctacctggaa 1050
||||||||||||| |||||||| | ||||||||||||||||||||| || ||||| ||||
Sbjct: 736 ttcgaccatgggagatgatattcc-atcgatccaccctaaatgcagcgatctaccgggaa 678
Query: 1051 aacttatgatgttgccatttatctgtcgtgactcttgga----tctaactgccacacatc 1106
|||||||||||||||||||||||||||||||||| |||| ||||||||| |
Sbjct: 677 aacttatgatgttgccatttatctgtcgtgactcgtggattcgtctaactgc-------c 625
Query: 1107 acatatgcggttcctagtatgcttgtgtaaagtattcgtgtatatatttccat-----ct 1161
||||||| |||||||||||||||||| ||| ||||| |||||||||||| || |
Sbjct: 624 acatatgtggttcctagtatgcttgtctaatgtatttgtgtatatatttggattgaaagt 565
Query: 1162 gggtttcttgttggaagattctggatggggtaccagatcagctgttgctggtcacagtgg 1221
|||||||||||||||| ||||||||||| | || || |||||||||||||||| ||||
Sbjct: 564 gggtttcttgttggaaaattctggatggagcactag---agctgttgctggtcacggtgg 508
Query: 1222 gcttgcctgg---tgtctctatgacgccaatattattatgtcatgtt 1265
||||| || | |||||||||||| |||||| |||||||| |||||
Sbjct: 507 gcttgacttgacttgtctctatgacaccaataatattatgtaatgtt 461
Score = 60.0 bits (30), Expect = 6e-007
Identities = 36/38 (94%)
Strand = Plus / Minus
Query: 1313 catatccctgttttctccgtccttcgcggagaccaacg 1350
||||||||||||||||||||| ||| ||||||||||||
Sbjct: 372 catatccctgttttctccgtcgttcacggagaccaacg 335
>gb|CW108245.1|CW108245 104_478_11097037_148_34481_049 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11097037, DNA
sequence
Length = 584
Score = 172 bits (87), Expect = 6e-041
Identities = 219/262 (83%), Gaps = 22/262 (8%)
Strand = Plus / Plus
Query: 1016 atcgatccaccctaaatgcagagacctacctggaaaacttatgatgttgccatttatctg 1075
||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||
Sbjct: 13 atcgatccaccctaaatgcagcgatctaccgggaaaacttatgatgttgccatttatctg 72
Query: 1076 tcgtgactcttgga----tctaactgccacacatcacatatgcggttcctagtatgcttg 1131
||||||||| |||| ||||||||| |||||||| |||||||||||||||||
Sbjct: 73 tcgtgactcgtggattcgtctaactgc-------cacatatgtggttcctagtatgcttg 125
Query: 1132 tgtaaagtattcgtgtatatatttccat-----ctgggtttcttgttggaagattctgga 1186
| ||| ||||| |||||||||||| || ||||||||||||||||| ||||||||
Sbjct: 126 tctaatgtatttgtgtatatatttggattgaaagtgggtttcttgttggaaaattctgga 185
Query: 1187 tggggtaccagatcagctgttgctggtcacagtgggcttgcctgg---tgtctctatgac 1243
||| | || || |||||||||||||||| ||||||||| || | ||||||||||||
Sbjct: 186 tggagcactag---agctgttgctggtcacggtgggcttgacttgacttgtctctatgac 242
Query: 1244 gccaatattattatgtcatgtt 1265
|||||| |||||||| |||||
Sbjct: 243 accaataatattatgtaatgtt 264
Score = 60.0 bits (30), Expect = 6e-007
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 1313 catatccctgttttctccgtccttcgcggagaccaacg 1350
||||||||||||||||||||| ||| ||||||||||||
Sbjct: 353 catatccctgttttctccgtcgttcacggagaccaacg 390
>gb|CW326769.1|CW326769 104_822_11478392_148_35969_028 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11478392, DNA
sequence
Length = 609
Score = 168 bits (85), Expect = 9e-040
Identities = 91/93 (97%)
Strand = Plus / Plus
Query: 16 gcagcgactgccggcgatggcgagcctcaccctgccgccggcgccccccaacccacgcca 75
||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 58 gcagcgattgccggcgatggcgagcctcaccctgccgccggcgcccccgaacccacgcca 117
Query: 76 ggacgccatcgacctccacaaggccttcaaagg 108
|||||||||||||||||||||||||||||||||
Sbjct: 118 ggacgccatcgacctccacaaggccttcaaagg 150
>gb|CW471643.1|CW471643 fsbb001f225l01k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f225l01, DNA
sequence
Length = 363
Score = 168 bits (85), Expect = 9e-040
Identities = 91/93 (97%)
Strand = Plus / Plus
Query: 16 gcagcgactgccggcgatggcgagcctcaccctgccgccggcgccccccaacccacgcca 75
||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 241 gcagcgattgccggcgatggcgagcctcaccctgccgccggcgcccccgaacccacgcca 300
Query: 76 ggacgccatcgacctccacaaggccttcaaagg 108
|||||||||||||||||||||||||||||||||
Sbjct: 301 ggacgccatcgacctccacaaggccttcaaagg 333
>gb|CW492663.1|CW492663 fsbb001f283a21k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f283a21, DNA
sequence
Length = 466
Score = 168 bits (85), Expect = 9e-040
Identities = 91/93 (97%)
Strand = Plus / Plus
Query: 16 gcagcgactgccggcgatggcgagcctcaccctgccgccggcgccccccaacccacgcca 75
||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 210 gcagcgattgccggcgatggcgagcctcaccctgccgccggcgcccccgaacccacgcca 269
Query: 76 ggacgccatcgacctccacaaggccttcaaagg 108
|||||||||||||||||||||||||||||||||
Sbjct: 270 ggacgccatcgacctccacaaggccttcaaagg 302
>gb|CW497705.1|CW497705 fsbb001f290j13k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f290j13, DNA
sequence
Length = 661
Score = 168 bits (85), Expect = 9e-040
Identities = 91/93 (97%)
Strand = Plus / Plus
Query: 16 gcagcgactgccggcgatggcgagcctcaccctgccgccggcgccccccaacccacgcca 75
||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 503 gcagcgattgccggcgatggcgagcctcaccctgccgccggcgcccccgaacccacgcca 562
Query: 76 ggacgccatcgacctccacaaggccttcaaagg 108
|||||||||||||||||||||||||||||||||
Sbjct: 563 ggacgccatcgacctccacaaggccttcaaagg 595
>gb|CW408254.1|CW408254 fsbb001f102b05k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f102b05, DNA
sequence
Length = 791
Score = 125 bits (63), Expect = 1e-026
Identities = 188/229 (82%), Gaps = 22/229 (9%)
Strand = Plus / Minus
Query: 1049 aaaacttatgatgttgccatttatctgtcgtgactcttggat----ctaactgccacaca 1104
|||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 787 aaaacttatgatgttgccatttatctgtcgtgactcgtggattcgtctaactgccaca-- 730
Query: 1105 tcacatatgcggttcctagtatgcttgtgtaaagtattcgtgtatatatttccatc---- 1160
|||| ||||| |||||||||||| ||| ||||| |||||||||||| ||
Sbjct: 729 -----tatgtggttcntagtatgcttgtctaatgtatttgtgtatatatttggattgaaa 675
Query: 1161 -tgggtttcttgttggaagattctggatggggtaccagatcagctgttgctggtcacagt 1219
||||||||||||||||| ||||||||||| | || || |||||||||||||||| ||
Sbjct: 674 gtgggtttcttgttggaaaattctggatggagcactag---agctgttgctggtcacggt 618
Query: 1220 gggcttgcctgg---tgtctctatgacgccaatattattatgtcatgtt 1265
||||||| || | |||||||||||| |||||| |||||||| |||||
Sbjct: 617 gggcttgacttgacttgtctctatgacaccaataatattatgtaatgtt 569
Score = 60.0 bits (30), Expect = 6e-007
Identities = 36/38 (94%)
Strand = Plus / Minus
Query: 1313 catatccctgttttctccgtccttcgcggagaccaacg 1350
||||||||||||||||||||| ||| ||||||||||||
Sbjct: 480 catatccctgttttctccgtcgttcacggagaccaacg 443
>gb|CW107247.1|CW107247 104_477_11096475_116_34476_010 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11096475, DNA
sequence
Length = 531
Score = 103 bits (52), Expect = 5e-020
Identities = 140/168 (83%), Gaps = 11/168 (6%)
Strand = Plus / Plus
Query: 1106 cacatatgcggttcctagtatgcttgtgtaaagtattcgtgtatatatttccatc----- 1160
|||||||| |||||||||||||||||| ||| ||||| |||||||||||| ||
Sbjct: 24 cacatatgtggttcctagtatgcttgtctaatgtatttgtgtatatatttggattgaaag 83
Query: 1161 tgggtttcttgttggaagattctggatggggtaccagatcagctgttgctggtcacagtg 1220
||||||||||||||||| ||||||||||| | || || |||||||||||||||| |||
Sbjct: 84 tgggtttcttgttggaaaattctggatggagcactag---agctgttgctggtcacggtg 140
Query: 1221 ggcttgcctgg---tgtctctatgacgccaatattattatgtcatgtt 1265
|||||| || | |||||||||||| |||||| |||||||| |||||
Sbjct: 141 ggcttgacttgacttgtctctatgacaccaataatattatgtaatgtt 188
Score = 60.0 bits (30), Expect = 6e-007
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 1313 catatccctgttttctccgtccttcgcggagaccaacg 1350
||||||||||||||||||||| ||| ||||||||||||
Sbjct: 277 catatccctgttttctccgtcgttcacggagaccaacg 314
>gb|CW108244.1|CW108244 104_478_11097037_116_34485_049 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11097037, DNA
sequence
Length = 633
Score = 60.0 bits (30), Expect = 6e-007
Identities = 36/38 (94%)
Strand = Plus / Minus
Query: 1313 catatccctgttttctccgtccttcgcggagaccaacg 1350
||||||||||||||||||||| ||| ||||||||||||
Sbjct: 554 catatccctgttttctccgtcgttcacggagaccaacg 517
>gb|AW563938.1|AW563938 LG1_275_H03.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 550
Score = 48.1 bits (24), Expect = 0.002
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 68 ccacgccaggacgccatcgacctccacaaggc 99
||||| |||||||| |||||||||||||||||
Sbjct: 105 ccacggcaggacgcgatcgacctccacaaggc 136
>gb|CF428932.1|CF428932 PH1_18_E11.g1_A002 Phosphorous-deficient seedlings Sorghum bicolor
cDNA clone PH1_18_E11_A002 5', mRNA sequence
Length = 776
Score = 48.1 bits (24), Expect = 0.002
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 68 ccacgccaggacgccatcgacctccacaaggc 99
||||| |||||||| |||||||||||||||||
Sbjct: 153 ccacggcaggacgcgatcgacctccacaaggc 184
>gb|CF431599.1|CF431599 NIT1_8_G05.g1_A002 Nitrogen-deficient seedlings Sorghum bicolor
cDNA clone NIT1_8_G05_A002 5', mRNA sequence
Length = 407
Score = 48.1 bits (24), Expect = 0.002
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 68 ccacgccaggacgccatcgacctccacaaggc 99
||||| |||||||| |||||||||||||||||
Sbjct: 129 ccacggcaggacgcgatcgacctccacaaggc 160
>gb|CF432039.1|CF432039 NIT1_16_B07.g1_A002 Nitrogen-deficient seedlings Sorghum bicolor
cDNA clone NIT1_16_B07_A002 5', mRNA sequence
Length = 365
Score = 48.1 bits (24), Expect = 0.002
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 68 ccacgccaggacgccatcgacctccacaaggc 99
||||| |||||||| |||||||||||||||||
Sbjct: 118 ccacggcaggacgcgatcgacctccacaaggc 149
>gb|CN125224.1|CN125224 RHOH1_9_F12.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_9_F12_A002 5', mRNA sequence
Length = 770
Score = 48.1 bits (24), Expect = 0.002
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 68 ccacgccaggacgccatcgacctccacaaggc 99
||||| |||||||| |||||||||||||||||
Sbjct: 119 ccacggcaggacgcgatcgacctccacaaggc 150
>gb|CN128070.1|CN128070 RHOH1_26_G06.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_26_G06_A002 5', mRNA sequence
Length = 579
Score = 48.1 bits (24), Expect = 0.002
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 68 ccacgccaggacgccatcgacctccacaaggc 99
||||| |||||||| |||||||||||||||||
Sbjct: 119 ccacggcaggacgcgatcgacctccacaaggc 150
>gb|CN130313.1|CN130313 RHOH1_40_D10.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_40_D10_A002 5', mRNA sequence
Length = 602
Score = 48.1 bits (24), Expect = 0.002
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 68 ccacgccaggacgccatcgacctccacaaggc 99
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Sbjct: 138 ccacggcaggacgcgatcgacctccacaaggc 169
>gb|CX621222.1|CX621222 GABR1_56_F11.g1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_56_F11_A002 5', mRNA sequence
Length = 747
Score = 48.1 bits (24), Expect = 0.002
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 68 ccacgccaggacgccatcgacctccacaaggc 99
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Sbjct: 134 ccacggcaggacgcgatcgacctccacaaggc 165
>gb|AW283623.1|AW283623 LG1_242_D02.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 111
Score = 42.1 bits (21), Expect = 0.14
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 1161 tgggtttcttgttggaagattctggatgg 1189
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Sbjct: 60 tgggtttcttgttggaaaattttggatgg 88
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 365,259
Number of Sequences: 832831
Number of extensions: 365259
Number of successful extensions: 103611
Number of sequences better than 0.5: 47
Number of HSP's better than 0.5 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 103430
Number of HSP's gapped (non-prelim): 123
length of query: 1473
length of database: 491,359,669
effective HSP length: 20
effective length of query: 1453
effective length of database: 474,703,049
effective search space: 689743530197
effective search space used: 689743530197
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)