BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3670912.2.1
(844 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CL173774.1|CL173774 104_377_10891106_116_31793_242 Sorgh... 894 0.0
gb|CW315423.1|CW315423 104_806_11472351_148_35827_056 Sorgh... 860 0.0
gb|CL173775.1|CL173775 104_377_10891106_148_31792_242 Sorgh... 856 0.0
gb|BG101760.1|BG101760 RHIZ2_21_A04.g1_A003 Rhizome2 (RHIZ2... 731 0.0
gb|BG355763.2|BG355763 EM1_19_C06.b1_A002 Embryo 1 (EM1) So... 690 0.0
gb|BG356009.2|BG356009 EM1_19_C06.g1_A002 Embryo 1 (EM1) So... 541 e-152
gb|BE362449.1|BE362449 DG1_86_G01.g1_A002 Dark Grown 1 (DG1... 539 e-151
gb|CD226034.1|CD226034 CCC1_43_C09.b1_A007 Callus culture/c... 527 e-148
gb|CW482625.1|CW482625 fsbb001f242n03k0 Sorghum methylation... 498 e-139
gb|CW150733.1|CW150733 104_551_11143570_116_36314_043 Sorgh... 476 e-132
gb|CW460986.1|CW460986 fsbb001f208h04f0 Sorghum methylation... 438 e-121
gb|CD463381.1|CD463381 ETH1_44_H01.b1_A002 Ethylene-treated... 430 e-119
gb|BG557612.1|BG557612 EM1_54_A03.g1_A002 Embryo 1 (EM1) So... 400 e-110
gb|BF587927.1|BF587927 FM1_34_F02.g1_A003 Floral-Induced Me... 398 e-109
gb|BG241551.1|BG241551 RHIZ2_17_A01.g1_A003 Rhizome2 (RHIZ2... 391 e-107
gb|CW300537.1|CW300537 104_784_11463715_116_36253_080 Sorgh... 345 4e-093
gb|AW922566.1|AW922566 DG1_45_G07.g1_A002 Dark Grown 1 (DG1... 319 2e-085
gb|CW380095.1|CW380095 fsbb001f059l10k0 Sorghum methylation... 281 5e-074
gb|CL164480.1|CL164480 104_358_10807939_114_31814_307 Sorgh... 268 8e-070
gb|CW091315.1|CW091315 104_453_10998477_114_33030_093 Sorgh... 268 8e-070
gb|BE358396.1|BE358396 DG1_29_B04.g1_A002 Dark Grown 1 (DG1... 268 8e-070
gb|CW150734.1|CW150734 104_551_11143570_148_36313_043 Sorgh... 264 1e-068
gb|CW176959.1|CW176959 104_590_11158763_148_36591_046 Sorgh... 262 5e-068
gb|BE358841.1|BE358841 DG1_32_D06.g1_A002 Dark Grown 1 (DG1... 262 5e-068
gb|BE360494.1|BE360494 DG1_63_B03.g1_A002 Dark Grown 1 (DG1... 262 5e-068
gb|BE918444.1|BE918444 OV1_3_G09.g1_A002 Ovary 1 (OV1) Sorg... 262 5e-068
gb|BE364574.2|BE364574 PI1_15_H09.g1_A002 Pathogen induced ... 262 5e-068
gb|CW460987.1|CW460987 fsbb001f208h04k0 Sorghum methylation... 254 1e-065
gb|DN551872.1|DN551872 pSPR-RT-MR-H1_G04_C276 pSPR Sorghum ... 252 5e-065
gb|BG487962.1|BG487962 RHIZ2_61_D12.g1_A003 Rhizome2 (RHIZ2... 246 3e-063
gb|BE367374.1|BE367374 PI1_4_E12.g1_A002 Pathogen induced 1... 230 2e-058
gb|BG558058.1|BG558058 RHIZ2_66_B02.g1_A003 Rhizome2 (RHIZ2... 224 1e-056
gb|BF481310.1|BF481310 FM1_18_D04.g1_A003 Floral-Induced Me... 220 2e-055
gb|CW439402.1|CW439402 fsbb001f157i10k0 Sorghum methylation... 196 2e-048
gb|CW463400.1|CW463400 fsbb001f211p20f0 Sorghum methylation... 192 4e-047
gb|CW221367.1|CW221367 104_656_11197867_116_37452_074 Sorgh... 180 1e-043
gb|CW246218.1|CW246218 104_707_11221250_116_35083_013 Sorgh... 178 5e-043
gb|AW282772.1|AW282772 LG1_290_F07.g1_A002 Light Grown 1 (L... 172 3e-041
gb|CW300538.1|CW300538 104_784_11463715_148_36254_080 Sorgh... 168 5e-040
gb|CD226116.1|CD226116 CCC1_43_C09.g1_A007 Callus culture/c... 153 3e-035
gb|CW442302.1|CW442302 fsbb001f161o10k0 Sorghum methylation... 145 8e-033
gb|CW257415.1|CW257415 104_722_11227323_116_35152_002 Sorgh... 141 1e-031
gb|CW482624.1|CW482624 fsbb001f242n03f0 Sorghum methylation... 141 1e-031
gb|AW677701.1|AW677701 WS1_10_H08.g1_A002 Water-stressed 1 ... 141 1e-031
gb|BE359207.1|BE359207 DG1_39_C05.g1_A002 Dark Grown 1 (DG1... 141 1e-031
gb|BE361256.1|BE361256 DG1_70_D10.g1_A002 Dark Grown 1 (DG1... 141 1e-031
gb|BE366341.1|BE366341 PI1_32_D08.g1_A002 Pathogen induced ... 141 1e-031
gb|BG047581.1|BG047581 OV1_25_F09.b1_A002 Ovary 1 (OV1) Sor... 141 1e-031
gb|BG047939.1|BG047939 OV1_25_F09.g1_A002 Ovary 1 (OV1) Sor... 141 1e-031
gb|BG102506.1|BG102506 RHIZ2_33_H09.g1_A003 Rhizome2 (RHIZ2... 141 1e-031
gb|BG932956.1|BG932956 DG1_69_D11.g1_A002 Dark Grown 1 (DG1... 141 1e-031
gb|BG948233.1|BG948233 IP1_10_H11.g1_A002 Immature pannicle... 141 1e-031
gb|BG948544.1|BG948544 IP1_10_H11.b1_A002 Immature pannicle... 141 1e-031
gb|CW091307.1|CW091307 104_453_10998472_116_33035_062 Sorgh... 137 2e-030
gb|CW380094.1|CW380094 fsbb001f059l10f0 Sorghum methylation... 137 2e-030
gb|CW389640.1|CW389640 fsbb001f074o21k0 Sorghum methylation... 137 2e-030
gb|CW457821.1|CW457821 fsbb001f203m21f0 Sorghum methylation... 137 2e-030
gb|CW474770.1|CW474770 fsbb001f230n01k0 Sorghum methylation... 137 2e-030
gb|BG273178.1|BG273178 OV2_27_G08.g1_A002 Ovary 2 (OV2) Sor... 125 7e-027
gb|CW221368.1|CW221368 104_656_11197867_148_37453_074 Sorgh... 100 4e-019
gb|BG158592.1|BG158592 RHIZ2_42_E08.g1_A003 Rhizome2 (RHIZ2... 100 4e-019
gb|CW297733.1|CW297733 104_780_11462198_116_35649_063 Sorgh... 92 1e-016
gb|CW297734.1|CW297734 104_780_11462198_148_35653_063 Sorgh... 92 1e-016
gb|CW322471.1|CW322471 104_816_11476115_148_35952_044 Sorgh... 92 1e-016
gb|CW436719.1|CW436719 fsbb001f153h11k0 Sorghum methylation... 92 1e-016
gb|AW565319.1|AW565319 LG1_342_A09.g1_A002 Light Grown 1 (L... 92 1e-016
gb|AW677269.1|AW677269 DG1_6_C02.g1_A002 Dark Grown 1 (DG1)... 92 1e-016
gb|AW745482.1|AW745482 WS1_35_G01.b1_A002 Water-stressed 1 ... 92 1e-016
gb|AW922837.1|AW922837 DG1_46_C11.g1_A002 Dark Grown 1 (DG1... 92 1e-016
gb|AW923056.1|AW923056 DG1_48_F12.g1_A002 Dark Grown 1 (DG1... 92 1e-016
gb|BE355038.1|BE355038 DG1_10_B12.g1_A002 Dark Grown 1 (DG1... 92 1e-016
gb|BE355327.1|BE355327 DG1_114_H09.b1_A002 Dark Grown 1 (DG... 92 1e-016
gb|BE355405.1|BE355405 DG1_114_H09.b2_A002 Dark Grown 1 (DG... 92 1e-016
gb|BE355461.1|BE355461 DG1_114_C11.g1_A002 Dark Grown 1 (DG... 92 1e-016
gb|BE355472.1|BE355472 DG1_114_H09.g1_A002 Dark Grown 1 (DG... 92 1e-016
gb|BE355572.1|BE355572 DG1_115_C11.b1_A002 Dark Grown 1 (DG... 92 1e-016
gb|BE356652.1|BE356652 DG1_126_A06.g1_A002 Dark Grown 1 (DG... 92 1e-016
gb|BE358732.1|BE358732 DG1_31_D02.g1_A002 Dark Grown 1 (DG1... 92 1e-016
gb|BE359598.1|BE359598 DG1_54_H12.g2_A002 Dark Grown 1 (DG1... 92 1e-016
gb|BE360126.1|BE360126 DG1_61_D02.g1_A002 Dark Grown 1 (DG1... 92 1e-016
gb|BE360152.1|BE360152 DG1_61_D02.g2_A002 Dark Grown 1 (DG1... 92 1e-016
gb|BE360475.1|BE360475 DG1_63_E06.g1_A002 Dark Grown 1 (DG1... 92 1e-016
gb|BE360990.1|BE360990 DG1_68_E08.g1_A002 Dark Grown 1 (DG1... 92 1e-016
gb|BE361202.1|BE361202 DG1_70_F03.g1_A002 Dark Grown 1 (DG1... 92 1e-016
gb|BE367050.1|BE367050 PI1_42_D08.g2_A002 Pathogen induced ... 92 1e-016
gb|BE592930.1|BE592930 WS1_92_B10.b1_A002 Water-stressed 1 ... 92 1e-016
gb|BF585486.1|BF585486 FM1_23_B02.g1_A003 Floral-Induced Me... 92 1e-016
gb|BG054269.1|BG054269 OV2_4_D10.g1_A002 Ovary 2 (OV2) Sorg... 92 1e-016
gb|BG103102.1|BG103102 RHIZ2_18_B11.g1_A003 Rhizome2 (RHIZ2... 92 1e-016
gb|BG239851.1|BG239851 OV1_29_G11.g1_A002 Ovary 1 (OV1) Sor... 92 1e-016
gb|BG356951.1|BG356951 OV2_12_A10.g1_A002 Ovary 2 (OV2) Sor... 92 1e-016
gb|BG932930.1|BG932930 DG1_69_B03.g1_A002 Dark Grown 1 (DG1... 92 1e-016
gb|BG932961.1|BG932961 DG1_69_E04.g1_A002 Dark Grown 1 (DG1... 92 1e-016
gb|BG947157.1|BG947157 IP1_3_C03.g1_A002 Immature pannicle ... 92 1e-016
gb|BI075504.1|BI075504 IP1_21_D02.g1_A002 Immature pannicle... 92 1e-016
gb|BI099244.1|BI099244 IP1_40_D02.g1_A002 Immature pannicle... 92 1e-016
gb|BI211453.1|BI211453 IP1_57_A06.g1_A002 Immature pannicle... 92 1e-016
gb|BI245526.1|BI245526 IP1_66_E07.g1_A002 Immature pannicle... 92 1e-016
gb|BM318326.1|BM318326 PI1_77_C08.g9_A002 Pathogen induced ... 92 1e-016
gb|CD220727.1|CD220727 CCC1_69_D11.b1_A007 Callus culture/c... 92 1e-016
gb|CD221354.1|CD221354 CCC1_54_F07.b1_A007 Callus culture/c... 92 1e-016
gb|CD223110.1|CD223110 CCC1_26_F03.b1_A007 Callus culture/c... 92 1e-016
gb|CD224320.1|CD224320 CCC1_33_H03.b1_A007 Callus culture/c... 92 1e-016
gb|CD224791.1|CD224791 CCC1_36_B03.b1_A007 Callus culture/c... 92 1e-016
gb|CD426221.1|CD426221 SA1_19_A02.b1_A002 Salicylic acid-tr... 92 1e-016
gb|CD426231.1|CD426231 SA1_19_D09.b1_A002 Salicylic acid-tr... 92 1e-016
gb|CD431991.1|CD431991 ETH1_12_C08.b1_A002 Ethylene-treated... 92 1e-016
gb|CF072290.1|CF072290 FE1_7_F11.b1_A002 Iron-deficient see... 92 1e-016
gb|CF072697.1|CF072697 FE1_25_E09.b1_A002 Iron-deficient se... 92 1e-016
gb|CF074261.1|CF074261 FE1_23_H08.b1_A002 Iron-deficient se... 92 1e-016
gb|CF427528.1|CF427528 PH1_16_G05.b1_A002 Phosphorous-defic... 92 1e-016
gb|CF431298.1|CF431298 NIT1_5_B12.b1_A002 Nitrogen-deficien... 92 1e-016
gb|CN125016.1|CN125016 RHOH1_8_H01.b1_A002 Acid- and alkali... 92 1e-016
gb|CN126243.1|CN126243 RHOH1_16_B03.b1_A002 Acid- and alkal... 92 1e-016
gb|CN129246.1|CN129246 RHOH1_34_G08.b3_A002 Acid- and alkal... 92 1e-016
gb|CN129330.1|CN129330 RHOH1_34_G08.g1_A002 Acid- and alkal... 92 1e-016
gb|CN131413.1|CN131413 RHOH1_48_A02.b1_A002 Acid- and alkal... 92 1e-016
gb|CN138952.1|CN138952 OX1_15_D09.b1_A002 Oxidatively-stres... 92 1e-016
gb|CX608397.1|CX608397 ANR1_38_H10.b1_A002 Anaerobic roots ... 92 1e-016
gb|BG049661.1|BG049661 EM1_7_D05.g1_A002 Embryo 1 (EM1) Sor... 90 4e-016
gb|AW565796.1|AW565796 LG1_349_B05.g1_A002 Light Grown 1 (L... 88 2e-015
gb|CX619982.1|CX619982 GABR1_49_D04.b1_A002 GA- or brassino... 86 6e-015
gb|CW234030.1|CW234030 104_687_11213762_148_37379_005 Sorgh... 84 2e-014
gb|CW314845.1|CW314845 104_805_11472043_148_35821_070 Sorgh... 82 9e-014
gb|BF704912.1|BF704912 FM1_46_B04.g2_A003 Floral-Induced Me... 82 9e-014
gb|BG052269.1|BG052269 RHIZ2_12_D09.g1_A003 Rhizome2 (RHIZ2... 82 9e-014
gb|BE366988.1|BE366988 PI1_42_D08.g1_A002 Pathogen induced ... 76 6e-012
gb|CX622505.1|CX622505 GABR1_64_H04.b2_A002 GA- or brassino... 76 6e-012
gb|BF656584.1|BF656584 FM1_51_H09.g1_A003 Floral-Induced Me... 74 2e-011
gb|BG412632.1|BG412632 OV2_36_H06.g1_A002 Ovary 2 (OV2) Sor... 70 4e-010
gb|CW246219.1|CW246219 104_707_11221250_116_37604_013 Sorgh... 66 6e-009
gb|AW285466.2|AW285466 LG1_251_H09.g1_A002 Light Grown 1 (L... 66 6e-009
gb|BE362573.1|BE362573 DG1_87_D07.g1_A002 Dark Grown 1 (DG1... 66 6e-009
gb|BG159391.1|BG159391 OV2_7_C05.g1_A002 Ovary 2 (OV2) Sorg... 66 6e-009
gb|BI351078.1|BI351078 IP1_69_E08.g1_A002 Immature pannicle... 66 6e-009
gb|BI351177.1|BI351177 IP1_70_H04.g1_A002 Immature pannicle... 66 6e-009
gb|BM323365.1|BM323365 PIC1_18_D12.b1_A002 Pathogen-infecte... 66 6e-009
gb|CW234029.1|CW234029 104_687_11213762_116_37380_005 Sorgh... 64 2e-008
gb|CW220801.1|CW220801 104_655_11197555_116_37153_070 Sorgh... 58 1e-006
gb|CW220802.1|CW220802 104_655_11197555_148_37154_070 Sorgh... 58 1e-006
gb|BE358315.1|BE358315 DG1_29_B04.b1_A002 Dark Grown 1 (DG1... 58 1e-006
gb|BE362992.2|BE362992 DG1_92_F01.g1_A002 Dark Grown 1 (DG1... 50 3e-004
gb|CW410953.1|CW410953 fsbb001f105o16f0 Sorghum methylation... 48 0.001
gb|CW398382.1|CW398382 fsbb001f087m15k0 Sorghum methylation... 46 0.005
gb|BG947536.1|BG947536 IP1_5_F11.g1_A002 Immature pannicle ... 46 0.005
gb|CW437890.1|CW437890 fsbb001f155d19f0 Sorghum methylation... 44 0.021
gb|BE359155.1|BE359155 DG1_39_C05.b1_A002 Dark Grown 1 (DG1... 44 0.021
gb|BE918238.1|BE918238 OV1_3_G09.b1_A002 Ovary 1 (OV1) Sorg... 44 0.021
gb|CW229255.1|CW229255 104_670_11207206_116_37258_087 Sorgh... 42 0.082
gb|CW459140.1|CW459140 fsbb001f205l23f0 Sorghum methylation... 42 0.082
>gb|CL173774.1|CL173774 104_377_10891106_116_31793_242 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10891106, DNA
sequence
Length = 778
Score = 894 bits (451), Expect = 0.0
Identities = 546/572 (95%), Gaps = 5/572 (0%)
Strand = Plus / Plus
Query: 7 gagaacgtgaaggccgcggtgaagaactn-gtgacgcaggtggccaagaagtccctgagc 65
|||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 63 gagaacgtgaaggccgcggtgaagaactgcgtgacgcaggtggccaagaagtcgctgagc 122
Query: 66 ctgaacgccaggggcgg-ctccacaacgcgcgcttctgcgagaaggacctgcagacggcg 124
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123 ctgaacgccaggggcgggctccacaacgcgcgcttctgcgagaaggacctgcagacggcg 182
Query: 125 atcngaccgcgaggcggtgtttncgtacgcggacgacccgtgcagcccccaactacgcgc 184
||| ||||| ||||||||||| |||||||||||||||||||||||||| |||||| |||
Sbjct: 183 atc-gaccgggaggcggtgttcgcgtacgcggacgacccgtgcagcccc-aactacccgc 240
Query: 185 tgatgcagaaantccgcgcggtgctggtcgagcacgcgctggccaaacggcgacgccgag 244
|||||||||| |||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct: 241 tgatgcagaagctccgcgcggtgctgatcgagcacgcgctggccaa-cggcgacgccgag 299
Query: 245 cgcgacgtggacacgtccatcttcgccaaggtggccgagttcgagcagcaggtccgcgcg 304
|||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 cgcgtcgtggagacgtccatcttcgccaaggtggccgagttcgagcagcaggtccgcgcc 359
Query: 305 gcgctgcccaaggaggtggaagccgcgcgcgcggccgtggagaacggcagccctctggtc 364
|||||||||||||||||||| ||||||||||| |||||||||| ||||| |||||||||
Sbjct: 360 gcgctgcccaaggaggtggaggccgcgcgcgccgccgtggagagcggcaaccctctggtg 419
Query: 365 cccaacaggatcaaggagtgccggtcctacccgctgtaccggttcgtgcgcgaggaggtc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 cccaacaggatcaaggagtgccggtcctacccgctgtaccggttcgtgcgcgaggaggtc 479
Query: 425 ggcaccgagtacctgaccggcgagaagacgaggtcgcccggcgaggagctgaacaaggtg 484
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 ggcacccagtacctgaccggcgagaagacgaggtcgcccggcgaggagctgaacaaggtg 539
Query: 485 ctcgtggccatcaaccagcgcaagcacatcgacccgctgctcgagtgcctcaaggagtgg 544
|| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 540 ctggtggccatcaaccagcgcaagcacgtcgacccgctgctcgagtgcctcaaggagtgg 599
Query: 545 aacggcgagcccctgccgctctgctgagctgc 576
||||||||||| ||||||||||||||||||||
Sbjct: 600 aacggcgagccactgccgctctgctgagctgc 631
Score = 50.1 bits (25), Expect = 3e-004
Identities = 49/57 (85%)
Strand = Plus / Plus
Query: 603 gaaggaaaacaaaagtatagcagcacaaaacagagcgtttcaaggtcgttgtgaagt 659
|||| ||||| |||||| ||| || ||| ||||||||||||||| || |||||||||
Sbjct: 676 gaagaaaaaccaaagtacagcggctcaagacagagcgtttcaagatcattgtgaagt 732
>gb|CW315423.1|CW315423 104_806_11472351_148_35827_056 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11472351, DNA
sequence
Length = 651
Score = 860 bits (434), Expect = 0.0
Identities = 529/555 (95%), Gaps = 5/555 (0%)
Strand = Plus / Minus
Query: 24 ggtgaagaactn-gtgacgcaggtggccaagaagtccctgagcctgaacgccaggggcgg 82
||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 651 ggtgaagaactgcgtgacgcaggtggccaagaagtcgctgagcctgaacgccaggggcgg 592
Query: 83 -ctccacaacgcgcgcttctgcgagaaggacctgcagacggcgatcngaccgcgaggcgg 141
||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct: 591 gctccacaacgcgcgcttctgcgagaaggacctgcagacggcgatc-gaccgggaggcgg 533
Query: 142 tgtttncgtacgcggacgacccgtgcagcccccaactacgcgctgatgcagaaantccgc 201
|||| |||||||||||||||||||||||||| |||||| ||||||||||||| |||||
Sbjct: 532 tgttcgcgtacgcggacgacccgtgcagcccc-aactacccgctgatgcagaagctccgc 474
Query: 202 gcggtgctggtcgagcacgcgctggccaaacggcgacgccgagcgcgacgtggacacgtc 261
||||||||| ||||||||||||||||||| ||||||||||||||||| |||||| |||||
Sbjct: 473 gcggtgctgatcgagcacgcgctggccaa-cggcgacgccgagcgcgtcgtggagacgtc 415
Query: 262 catcttcgccaaggtggccgagttcgagcagcaggtccgcgcggcgctgcccaaggaggt 321
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 414 catcttcgccaaggtggccgagttcgagcagcaggtccgcgccgcgctgcccaaggaggt 355
Query: 322 ggaagccgcgcgcgcggccgtggagaacggcagccctctggtccccaacaggatcaagga 381
||| ||||||||||| |||||||||| ||||| ||||||||| |||||||||||||||||
Sbjct: 354 ggaggccgcgcgcgccgccgtggagagcggcaaccctctggtgcccaacaggatcaagga 295
Query: 382 gtgccggtcctacccgctgtaccggttcgtgcgcgaggaggtcggcaccgagtacctgac 441
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 294 gtgccggtcctacccgctgtaccggttcgtgcgcgaggaggtcggcacccagtacctgac 235
Query: 442 cggcgagaagacgaggtcgcccggcgaggagctgaacaaggtgctcgtggccatcaacca 501
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 234 cggcgagaagacgaggtcgcccggcgaggagctgaacaaggtgctggtggccatcaacca 175
Query: 502 gcgcaagcacatcgacccgctgctcgagtgcctcaaggagtggaacggcgagcccctgcc 561
|||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 174 gcgcaagcacgtcgacccgctgctcgagtgcctcaaggagtggaacggcgagccactgcc 115
Query: 562 gctctgctgagctgc 576
|||||||||||||||
Sbjct: 114 gctctgctgagctgc 100
Score = 46.1 bits (23), Expect = 0.005
Identities = 47/55 (85%)
Strand = Plus / Minus
Query: 603 gaaggaaaacaaaagtatagcagcacaaaacagagcgtttcaaggtcgttgtgaa 657
|||| ||||| |||||| ||| || ||| ||||||||||||||| || |||||||
Sbjct: 55 gaagaaaaaccaaagtacagcggctcaagacagagcgtttcaagatcattgtgaa 1
>gb|CL173775.1|CL173775 104_377_10891106_148_31792_242 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10891106, DNA
sequence
Length = 725
Score = 856 bits (432), Expect = 0.0
Identities = 518/542 (95%), Gaps = 4/542 (0%)
Strand = Plus / Minus
Query: 36 gtgacgcaggtggccaagaagtccctgagcctgaacgccaggggcgg-ctccacaacgcg 94
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct: 723 gtgacgcaggtggccaagaagtcgctgagcctgaacgccaggggcgggctccacaacgcg 664
Query: 95 cgcttctgcgagaaggacctgcagacggcgatcngaccgcgaggcggtgtttncgtacgc 154
||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||
Sbjct: 663 cgcttctgcgagaaggacctgcagacggcgatc-gaccgggaggcggtgttcgcgtacgc 605
Query: 155 ggacgacccgtgcagcccccaactacgcgctgatgcagaaantccgcgcggtgctggtcg 214
||||||||||||||||||| |||||| ||||||||||||| |||||||||||||| |||
Sbjct: 604 ggacgacccgtgcagcccc-aactacccgctgatgcagaagctccgcgcggtgctgatcg 546
Query: 215 agcacgcgctggccaaacggcgacgccgagcgcgacgtggacacgtccatcttcgccaag 274
|||||||||||||||| ||||||||||||||||| |||||| ||||||||||||||||||
Sbjct: 545 agcacgcgctggccaa-cggcgacgccgagcgcgtcgtggagacgtccatcttcgccaag 487
Query: 275 gtggccgagttcgagcagcaggtccgcgcggcgctgcccaaggaggtggaagccgcgcgc 334
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct: 486 gtggccgagttcgagcagcaggtccgcgccgcgctgcccaaggaggtggaggccgcgcgc 427
Query: 335 gcggccgtggagaacggcagccctctggtccccaacaggatcaaggagtgccggtcctac 394
|| |||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct: 426 gccgccgtggagagcggcaaccctctggtgcccaacaggatcaaggagtgccggtcctac 367
Query: 395 ccgctgtaccggttcgtgcgcgaggaggtcggcaccgagtacctgaccggcgagaagacg 454
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 366 ccgctgtaccggttcgtgcgcgaggaggtcggcacccagtacctgaccggcgagaagacg 307
Query: 455 aggtcgcccggcgaggagctgaacaaggtgctcgtggccatcaaccagcgcaagcacatc 514
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct: 306 aggtcgcccggcgaggagctgaacaaggtgctggtggccatcaaccagcgcaagcacgtc 247
Query: 515 gacccgctgctcgagtgcctcaaggagtggaacggcgagcccctgccgctctgctgagct 574
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 246 gacccgctgctcgagtgcctcaaggagtggaacggcgagccactgccgctctgctgagct 187
Query: 575 gc 576
||
Sbjct: 186 gc 185
Score = 81.8 bits (41), Expect = 9e-014
Identities = 118/141 (83%), Gaps = 7/141 (4%)
Strand = Plus / Minus
Query: 603 gaaggaaaacaaaagtatagcagcacaaaacagagcgtttcaaggtcgttgtgaagtgct 662
|||| ||||| |||||| ||| || ||| ||||||||||||||| || ||||||||| |
Sbjct: 140 gaagaaaaaccaaagtacagcggctcaagacagagcgtttcaagatcattgtgaagt-tt 82
Query: 663 ttacgatcatactagcaggaga---actctatatttaccgttgccctg---taccagtag 716
|||| | || |||||||| ||| ||||||||||||||||||| || ||| |||||
Sbjct: 81 ttacaaccagactagcagaagatactctctatatttaccgttgccttgtactactagtag 22
Query: 717 ctaaagttcatgtgaatgttg 737
|||||||||||||||||||||
Sbjct: 21 ctaaagttcatgtgaatgttg 1
>gb|BG101760.1|BG101760 RHIZ2_21_A04.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 525
Score = 731 bits (369), Expect = 0.0
Identities = 442/463 (95%), Gaps = 3/463 (0%)
Strand = Plus / Plus
Query: 114 tgcagacggcgatcngaccgcgaggcggtgtttncgtacgcggacgacccgtgcagcccc 173
|||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct: 1 tgcagacggcgatc-gaccgggaggcggtgttcgcgtacgcggacgacccgtgcagcccc 59
Query: 174 caactacgcgctgatgcagaaantccgcgcggtgctggtcgagcacgcgctggccaaacg 233
|||||| ||||||||||||| |||||||||||||| ||||||||||||||||||| ||
Sbjct: 60 -aactacccgctgatgcagaagctccgcgcggtgctgatcgagcacgcgctggccaa-cg 117
Query: 234 gcgacgccgagcgcgacgtggacacgtccatcttcgccaaggtggccgagttcgagcagc 293
||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 118 gcgacgccgagcgcgtcgtggagacgtccatcttcgccaaggtggccgagttcgagcagc 177
Query: 294 aggtccgcgcggcgctgcccaaggaggtggaagccgcgcgcgcggccgtggagaacggca 353
|||||||||| |||||||||||||||||||| ||||||||||| |||||||||| |||||
Sbjct: 178 aggtccgcgccgcgctgcccaaggaggtggaggccgcgcgcgccgccgtggagagcggca 237
Query: 354 gccctctggtccccaacaggatcaaggagtgccggtcctacccgctgtaccggttcgtgc 413
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 accctctggtgcccaacaggatcaaggagtgccggtcctacccgctgtaccggttcgtgc 297
Query: 414 gcgaggaggtcggcaccgagtacctgaccggcgagaagacgaggtcgcccggcgaggagc 473
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 gcgaggaggtcggcacccagtacctgaccggcgagaagacgaggtcgcccggcgaggagc 357
Query: 474 tgaacaaggtgctcgtggccatcaaccagcgcaagcacatcgacccgctgctcgagtgcc 533
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 tgaacaaggtgctggtggccatcaaccagcgcaagcacatcgacccgctgctcgagtgcc 417
Query: 534 tcaaggagtggaacggcgagcccctgccgctctgctgagctgc 576
|||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 418 tcaaggagtggaacggcgagccactgccgctctgctgagctgc 460
>gb|BG355763.2|BG355763 EM1_19_C06.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 495
Score = 690 bits (348), Expect = 0.0
Identities = 434/457 (94%), Gaps = 5/457 (1%)
Strand = Plus / Plus
Query: 7 gagaacgtgaaggccgcggtgaagaactn-gtgacgcaggtggccaagaagtccctgagc 65
|||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 42 gagaacgtgaaggccgcggtgaagaactgcgtgacgcaggtggccaagaagtcgctgagc 101
Query: 66 ctgaacgccaggggcgg-ctccacaacgcgcgcttctgcgagaaggacctgcagacggcg 124
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102 ctgaacgccaggggcgggctccacaacgcgcgcttctgcgagaaggacctgcagacggcg 161
Query: 125 atcngaccgcgaggcggtgtttncgtacgcggacgacccgtgcagcccccaactacgcgc 184
||| ||||| ||||||||||| |||||||||||||||||||||||||| |||||| |||
Sbjct: 162 atc-gaccgggaggcggtgttcgcgtacgcggacgacccgtgcagcccc-aactacccgc 219
Query: 185 tgatgcagaaantccgcgcggtgctggtcgagcacgcgctggccaaacggcgacgccgag 244
|||||||||| |||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct: 220 tgatgcagaagctccgcgcggtgctgatcgagcacgcgctggccaa-cggcgacgccgag 278
Query: 245 cgcgacgtggacacgtccatcttcgccaaggtggccgagttcgagcagcaggtccgcgcg 304
|||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 cgcgtcgtggagacgtccatcttcgccaaggtggccgagttcgagcagcaggtccgcgcc 338
Query: 305 gcgctgcccaaggaggtggaagccgcgcgcgcggccgtggagaacggcagccctctggtc 364
|||||||||||||||||||| ||||||||||| |||||||||| ||||| |||||||||
Sbjct: 339 gcgctgcccaaggaggtggaggccgcgcgcgccgccgtggagagcggcaaccctctggtg 398
Query: 365 cccaacaggatcaaggagtgccggtcctacccgctgtaccggttcgtgcgcgaggaggtc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 cccaacaggatcaaggagtgccggtcctacccgctgtaccggttcgtgcgcgaggaggtc 458
Query: 425 ggcaccgagtacctgaccggcgagaagacgaggtcgc 461
|||||| ||||||||||||||||||||||||||||||
Sbjct: 459 ggcacccagtacctgaccggcgagaagacgaggtcgc 495
>gb|BG356009.2|BG356009 EM1_19_C06.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 513
Score = 541 bits (273), Expect = e-152
Identities = 305/316 (96%)
Strand = Plus / Plus
Query: 261 ccatcttcgccaaggtggccgagttcgagcagcaggtccgcgcggcgctgcccaaggagg 320
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1 ccatcttcgccaaggtggcngagttcgagcagcaggtccgcgccgcgctgcccaaggagg 60
Query: 321 tggaagccgcgcgcgcggccgtggagaacggcagccctctggtccccaacaggatcaagg 380
|||| ||||||||||| |||||||||| ||||| ||||||||| ||||||||||||||||
Sbjct: 61 tggaggccgcgcgcgccgccgtggagagcggcaaccctctggtgcccaacaggatcaagg 120
Query: 381 agtgccggtcctacccgctgtaccggttcgtgcgcgaggaggtcggcaccgagtacctga 440
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 121 agtgccggtcctacccgctgtaccggttcgtgcgcgaggaggtcggcacccagtacctga 180
Query: 441 ccggcgagaagacgaggtcgcccggcgaggagctgaacaaggtgctcgtggccatcaacc 500
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 181 ccggcgagaagacgaggtcgcccggcgaggagctgaacaaggtgctggtggccatcaacc 240
Query: 501 agcgcaagcacatcgacccgctgctcgagtgcctcaaggagtggaacggcgagcccctgc 560
||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 241 agcgcaagcacgtcgacccgctgctcgagtgcctcaaggagtggaacggcgagccactgc 300
Query: 561 cgctctgctgagctgc 576
||||||||||||||||
Sbjct: 301 cgctctgctgagctgc 316
Score = 97.6 bits (49), Expect = 2e-018
Identities = 126/149 (84%), Gaps = 7/149 (4%)
Strand = Plus / Plus
Query: 603 gaaggaaaacaaaagtatagcagcacaaaacagagcgtttcaaggtcgttgtgaagtgct 662
|||| ||||| |||||| ||| || ||| ||||||||||||||| || ||||||||| |
Sbjct: 361 gaagaaaaaccaaagtacagcggctcaagacagagcgtttcaagatcattgtgaagt-tt 419
Query: 663 ttacgatcatactagcaggaga---actctatatttaccgttgccctg---taccagtag 716
|||| | || |||||||| ||| ||||||||||||||||||| || ||| |||||
Sbjct: 420 ttacaaccagactagcagaagatactctctatatttaccgttgccttgtactactagtag 479
Query: 717 ctaaagttcatgtgaatgttgttgtgttc 745
|||||||||||||||||||||||||||||
Sbjct: 480 ctaaagttcatgtgaatgttgttgtgttc 508
>gb|BE362449.1|BE362449 DG1_86_G01.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 432
Score = 539 bits (272), Expect = e-151
Identities = 305/316 (96%)
Strand = Plus / Plus
Query: 261 ccatcttcgccaaggtggccgagttcgagcagcaggtccgcgcggcgctgcccaaggagg 320
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1 ccattttcgccaaggtggccgagttcgagcagcaggtccgcgccgcgctgcccaaggagg 60
Query: 321 tggaagccgcgcgcgcggccgtggagaacggcagccctctggtccccaacaggatcaagg 380
|||| ||||||||||| |||||||||| ||||| ||||||||| ||||||||||||||||
Sbjct: 61 tggaggccgcgcgcgccgccgtggagagcggcaaccctctggtgcccaacaggatcaagg 120
Query: 381 agtgccggtcctacccgctgtaccggttcgtgcgcgaggaggtcggcaccgagtacctga 440
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 121 agtgccggtcctacccgctgtaccggttcgtgcgcgaggaggtcggcacccagtacctga 180
Query: 441 ccggcgagaagacgaggtcgcccggcgaggagctgaacaaggtgctcgtggccatcaacc 500
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 181 ccggcgagaagacgaggtcgcccggcgaggagctgaacaaggtgctggtggccatcaacc 240
Query: 501 agcgcaagcacatcgacccgctgctcgagtgcctcaaggagtggaacggcgagcccctgc 560
||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 241 agcgcaagcacgtcgacccgctgctcgagtgcctcaaggagtggaacggcgagccactgc 300
Query: 561 cgctctgctgagctgc 576
||||||||||||||||
Sbjct: 301 cgctctgctgagctgc 316
Score = 50.1 bits (25), Expect = 3e-004
Identities = 49/57 (85%)
Strand = Plus / Plus
Query: 603 gaaggaaaacaaaagtatagcagcacaaaacagagcgtttcaaggtcgttgtgaagt 659
|||| ||||| |||||| ||| || ||| ||||||||||||||| || |||||||||
Sbjct: 361 gaagaaaaaccaaagtacagcggctcaagacagagcgtttcaagatcattgtgaagt 417
>gb|CD226034.1|CD226034 CCC1_43_C09.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_43_C09_A007 3', mRNA sequence
Length = 614
Score = 527 bits (266), Expect = e-148
Identities = 296/306 (96%)
Strand = Plus / Plus
Query: 271 caaggtggccgagttcgagcagcaggtccgcgcggcgctgcccaaggaggtggaagccgc 330
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct: 1 caaggtggccgagttcgagcagcaggtccgcgccgcgctgcccaaggaggtggaggccgc 60
Query: 331 gcgcgcggccgtggagaacggcagccctctggtccccaacaggatcaaggagtgccggtc 390
|||||| |||||||||| ||||| ||||||||| ||||||||||||||||||||||||||
Sbjct: 61 gcgcgccgccgtggagagcggcaaccctctggtgcccaacaggatcaaggagtgccggtc 120
Query: 391 ctacccgctgtaccggttcgtgcgcgaggaggtcggcaccgagtacctgaccggcgagaa 450
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 121 ctacccgctgtaccggttcgtgcgcgaggaggtcggcacccagtacctgaccggcgagaa 180
Query: 451 gacgaggtcgcccggcgaggagctgaacaaggtgctcgtggccatcaaccagcgcaagca 510
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 181 gacgaggtcgcccggcgaggagctgaacaaggtgctggtggccatcaaccagcgcaagca 240
Query: 511 catcgacccgctgctcgagtgcctcaaggagtggaacggcgagcccctgccgctctgctg 570
| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 241 cgtcgacccgctgctcgagtgcctcaaggagtggaacggcgagccactgccgctctgctg 300
Query: 571 agctgc 576
||||||
Sbjct: 301 agctgc 306
Score = 196 bits (99), Expect = 2e-048
Identities = 199/229 (86%), Gaps = 10/229 (4%)
Strand = Plus / Plus
Query: 603 gaaggaaaacaaaagtatagcagcacaaaacagagcgtttcaaggtcgttgtgaagtgct 662
|||| ||||| |||||| ||| || ||| ||||||||||||||| || ||||||||| |
Sbjct: 351 gaagaaaaaccaaagtacagcggctcaagacagagcgtttcaagatcattgtgaagt-tt 409
Query: 663 ttacgatcatactagcaggaga---actctatatttaccgttgccctg---taccagtag 716
|||| | || |||||||| ||| ||||||||||||||||||| || ||| |||||
Sbjct: 410 ttacaaccagactagcagaagatactctctatatttaccgttgccttgtactactagtag 469
Query: 717 ctaaagttcatgtgaatgttgttgtg---ttcccgcagctgcgacgccatggcctgcgat 773
|||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct: 470 ctaaagttcatgtgaatgttgttgtgttcttcccgcagctgcgacgccatggcctgcaat 529
Query: 774 gtgcatggtcttggctgctgcagctactgaaacttttgatggttttaac 822
| ||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct: 530 gcgcatgttcttggctgttgcagctactgaaacttttgatggttttaac 578
>gb|CW482625.1|CW482625 fsbb001f242n03k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f242n03, DNA
sequence
Length = 636
Score = 498 bits (251), Expect = e-139
Identities = 284/295 (96%)
Strand = Plus / Minus
Query: 282 agttcgagcagcaggtccgcgcggcgctgcccaaggaggtggaagccgcgcgcgcggccg 341
|||||||||||||||||||||| |||||||||||||||||||| |||||||||| ||||
Sbjct: 636 agttcgagcagcaggtccgcgccgcgctgcccaaggaggtggaggccgcgcgcgtcgccg 577
Query: 342 tggagaacggcagccctctggtccccaacaggatcaaggagtgccggtcctacccgctgt 401
|||||| ||||| ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 576 tggagagcggcaaccctctggtgcccaacaggatcaaggagtgccggtcctacccgctgt 517
Query: 402 accggttcgtgcgcgaggaggtcggcaccgagtacctgaccggcgagaagacgaggtcgc 461
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 516 accggttcgtgcgcgaggaggtcggcacccagtacctgaccggcgagaagacgaggtcgc 457
Query: 462 ccggcgaggagctgaacaaggtgctcgtggccatcaaccagcgcaagcacatcgacccgc 521
||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct: 456 ccggcgaggagctgaacaaggtgctggtggccatcaaccagcgcaagcacgtcgacccgc 397
Query: 522 tgctcgagtgcctcaaggagtggaacggcgagcccctgccgctctgctgagctgc 576
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 396 tgctcgagtgcctcaaggagtggaacggcgagccactgccgctctgctgagctgc 342
Score = 196 bits (99), Expect = 2e-048
Identities = 199/229 (86%), Gaps = 10/229 (4%)
Strand = Plus / Minus
Query: 603 gaaggaaaacaaaagtatagcagcacaaaacagagcgtttcaaggtcgttgtgaagtgct 662
|||| ||||| |||||| ||| || ||| ||||||||||||||| || ||||||||| |
Sbjct: 297 gaagaaaaaccaaagtacagcggctcaagacagagcgtttcaagatcattgtgaagt-tt 239
Query: 663 ttacgatcatactagcaggaga---actctatatttaccgttgccctg---taccagtag 716
|||| | || |||||||| ||| ||||||||||||||||||| || ||| |||||
Sbjct: 238 ttacaaccagactagcagaagatactctctatatttaccgttgccttgtactactagtag 179
Query: 717 ctaaagttcatgtgaatgttgttgtg---ttcccgcagctgcgacgccatggcctgcgat 773
|||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct: 178 ctaaagttcatgtgaatgttgttgtgttcttcccgcagctgcgacgccatggcctgcaat 119
Query: 774 gtgcatggtcttggctgctgcagctactgaaacttttgatggttttaac 822
| ||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct: 118 gcgcatgttcttggctgttgcagctactgaaacttttgatggttttaac 70
>gb|CW150733.1|CW150733 104_551_11143570_116_36314_043 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11143570, DNA
sequence
Length = 657
Score = 476 bits (240), Expect = e-132
Identities = 463/530 (87%), Gaps = 6/530 (1%)
Strand = Plus / Plus
Query: 44 ggtggccaagaagtccctgagcctgaacgccaggggcgg-ctccacaacgcgcgcttctg 102
||||||||||||| | |||||| | ||||| ||| || ||||||||||||||||||||
Sbjct: 53 ggtggccaagaagacgctgagcaccagcgccacgggtggcctccacaacgcgcgcttctg 112
Query: 103 cgagaaggacctgcagacggcgatcngaccgcgaggcggtgtttncgtacgcggacgacc 162
|||||||||||||| |||||||||| ||||||||||||||||| |||||||||||||||
Sbjct: 113 cgagaaggacctgctgacggcgatc-gaccgcgaggcggtgttcgcgtacgcggacgacc 171
Query: 163 cgtgcagcccccaactacgcgctgatgcagaaantccgcgcggtgctggtcgagcacgcg 222
| ||||| | |||||||| ||||||||||||| | || |||||||||| |||||||||
Sbjct: 172 cctgcag-cgccaactacccgctgatgcagaagatgcggtcggtgctggtggagcacgcg 230
Query: 223 ctggccaaacggcgacgccgagcgcgacgtggacacgtccatcttcgccaaggtggccga 282
|||||| |||||||| || ||||||||| ||| ||||| | |||||||||||||||
Sbjct: 231 ctggcc-aacggcgaggcggagcgcgacccggagacgtcggtgttcgccaaggtggccac 289
Query: 283 gttcgagcagcaggtccgcgcggcgctgcccaaggaggtggaagccgcgcgcgcggccgt 342
||||||| || || ||||||||||||||||| ||||||||| || || |||||||||||
Sbjct: 290 gttcgaggaggagctccgcgcggcgctgccccgggaggtggacgcggcccgcgcggccgt 349
Query: 343 ggagaacggca-gccctctggtccccaacaggatcaaggagtgccggtcctacccgctgt 401
||||||||||| | || | ||| || ||||||||| ||||||||||| ||||||||||
Sbjct: 350 ggagaacggcacggccgc-ggtaccgaacaggatcgccgagtgccggtcgtacccgctgt 408
Query: 402 accggttcgtgcgcgaggaggtcggcaccgagtacctgaccggcgagaagacgaggtcgc 461
|| ||||||||||||||||| ||||||| |||||||||||||| ||||||||||||||||
Sbjct: 409 acaggttcgtgcgcgaggagctcggcacggagtacctgaccggggagaagacgaggtcgc 468
Query: 462 ccggcgaggagctgaacaaggtgctcgtggccatcaaccagcgcaagcacatcgacccgc 521
||||||||||| ||||||||||| ||||||| || |||| | |||||||||||||| |
Sbjct: 469 ccggcgaggaggtgaacaaggtgttcgtggcgatgaacctgggcaagcacatcgacgccg 528
Query: 522 tgctcgagtgcctcaaggagtggaacggcgagcccctgccgctctgctga 571
|||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct: 529 tgctcgagtgcctcaaggagtggaacggtgagcccctgccgatctgctga 578
>gb|CW460986.1|CW460986 fsbb001f208h04f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f208h04, DNA
sequence
Length = 698
Score = 438 bits (221), Expect = e-121
Identities = 413/471 (87%), Gaps = 5/471 (1%)
Strand = Plus / Plus
Query: 102 gcgagaaggacctgcagacggcgatcngaccgcgaggcggtgtttncgtacgcggacgac 161
||||||||||||||| |||||||||| ||||||||||||||||| ||||||||||||||
Sbjct: 1 gcgagaaggacctgctgacggcgatc-gaccgcgaggcggtgttcgcgtacgcggacgac 59
Query: 162 ccgtgcagcccccaactacgcgctgatgcagaaantccgcgcggtgctggtcgagcacgc 221
|| |||||| || |||||| ||||||||||||| | || |||||||||| ||||||||
Sbjct: 60 ccctgcagcgcc-aactacccgctgatgcagaagatgcggtcggtgctggtggagcacgc 118
Query: 222 gctggccaaacggcgacgccgagcgcgacgtggacacgtccatcttcgccaaggtggccg 281
||||||||| |||||| || ||||||||| ||| ||||| | |||||||||||||||
Sbjct: 119 gctggccaa-cggcgaggcggagcgcgacccggagacgtcggtgttcgccaaggtggcca 177
Query: 282 agttcgagcagcaggtccgcgcggcgctgcccaaggaggtggaagccgcgcgcgcggccg 341
||||||| || || ||||||||||||||||| ||||||||| || || ||||||||||
Sbjct: 178 cgttcgaggaggagctccgcgcggcgctgccccgggaggtggacgcggcccgcgcggccg 237
Query: 342 tggagaacggca-gccctctggtccccaacaggatcaaggagtgccggtcctacccgctg 400
|||||||||||| | || | ||| || ||||||||| ||||||||||| |||||||||
Sbjct: 238 tggagaacggcacggccgc-ggtaccgaacaggatcgccgagtgccggtcgtacccgctg 296
Query: 401 taccggttcgtgcgcgaggaggtcggcaccgagtacctgaccggcgagaagacgaggtcg 460
||| ||||||||||||||||| ||||||| |||||||||||||| |||||||||||||||
Sbjct: 297 tacaggttcgtgcgcgaggagctcggcacggagtacctgaccggggagaagacgaggtcg 356
Query: 461 cccggcgaggagctgaacaaggtgctcgtggccatcaaccagcgcaagcacatcgacccg 520
|||||||||||| ||||||||||| ||||||| || |||| | |||||||||||||| |
Sbjct: 357 cccggcgaggaggtgaacaaggtgttcgtggcgatgaacctgggcaagcacatcgacgcc 416
Query: 521 ctgctcgagtgcctcaaggagtggaacggcgagcccctgccgctctgctga 571
|||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct: 417 gtgctcgagtgcctcaaggagtggaacggtgagcccctgccgatctgctga 467
>gb|CD463381.1|CD463381 ETH1_44_H01.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_44_H01_A002 3', mRNA sequence
Length = 633
Score = 430 bits (217), Expect = e-119
Identities = 253/265 (95%)
Strand = Plus / Plus
Query: 312 ccaaggaggtggaagccgcgcgcgcggccgtggagaacggcagccctctggtccccaaca 371
||||||||||||| ||||||||||| ||||||||| ||||| ||||||||| ||||||
Sbjct: 1 ccaaggaggtggaggccgcgcgcgcccccgtggagagcggcaaccctctggtgtccaaca 60
Query: 372 ggatcaaggagtgccggtcctacccgctgtaccggttcgtgcgcgaggaggtcggcaccg 431
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ggatcaaggagtgccggtcctacccgctgtaccggttcgtgcgcgaggaggtcggcaccc 120
Query: 432 agtacctgaccggcgagaagacgaggtcgcccggcgaggagctgaacaaggtgctcgtgg 491
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 121 agtacctgaccggcgagaagacgaggtcgcccggcgaggagctgaacaaggtgctggtgg 180
Query: 492 ccatcaaccagcgcaagcacatcgacccgctgctcgagtgcctcaaggagtggaacggcg 551
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ccatcaaccagcgcaagcacgtcgacccgctgctcgagtgcctcaaggagtggaacggcg 240
Query: 552 agcccctgccgctctgctgagctgc 576
|||| ||||||||||| ||||||||
Sbjct: 241 agccactgccgctctgttgagctgc 265
Score = 196 bits (99), Expect = 2e-048
Identities = 199/229 (86%), Gaps = 10/229 (4%)
Strand = Plus / Plus
Query: 603 gaaggaaaacaaaagtatagcagcacaaaacagagcgtttcaaggtcgttgtgaagtgct 662
|||| ||||| |||||| ||| || ||| ||||||||||||||| || ||||||||| |
Sbjct: 310 gaagaaaaaccaaagtacagcggctcaagacagagcgtttcaagatcattgtgaagt-tt 368
Query: 663 ttacgatcatactagcaggaga---actctatatttaccgttgccctg---taccagtag 716
|||| | || |||||||| ||| ||||||||||||||||||| || ||| |||||
Sbjct: 369 ttacaaccagactagcagaagatactctctatatttaccgttgccttgtactactagtag 428
Query: 717 ctaaagttcatgtgaatgttgttgtg---ttcccgcagctgcgacgccatggcctgcgat 773
|||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct: 429 ctaaagttcatgtgaatgttgttgtgttcttcccgcagctgcgacgccatggcctgcaat 488
Query: 774 gtgcatggtcttggctgctgcagctactgaaacttttgatggttttaac 822
| ||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct: 489 gcgcatgttcttggctgttgcagctactgaaacttttgatggttttaac 537
>gb|BG557612.1|BG557612 EM1_54_A03.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 508
Score = 400 bits (202), Expect = e-110
Identities = 217/222 (97%)
Strand = Plus / Plus
Query: 355 ccctctggtccccaacaggatcaaggagtgccggtcctacccgctgtaccggttcgtgcg 414
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ccctctggtgcccaacaggatcaaggagtgccggtcctacccgctgtaccggttcgtgcg 60
Query: 415 cgaggaggtcggcaccgagtacctgaccggcgagaagacgaggtcgcccggcgaggagct 474
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cgaggaggtcggcacccagtacctgaccggcgagaagacgaggtcgcccggcgaggagct 120
Query: 475 gaacaaggtgctcgtggccatcaaccagcgcaagcacatcgacccgctgctcgagtgcct 534
|||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 121 gaacaaggtgctggtggccatcaaccagcgcaagcacgtcgacccgctgctcgagtgcct 180
Query: 535 caaggagtggaacggcgagcccctgccgctctgctgagctgc 576
||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 181 caaggagtggaacggcgagccactgccgctctgctgagctgc 222
Score = 192 bits (97), Expect = 4e-047
Identities = 199/230 (86%), Gaps = 11/230 (4%)
Strand = Plus / Plus
Query: 603 gaaggaaaacaaaagtatagcagcacaaaacagagcgtttcaaggtcgttgtgaagtgct 662
|||| ||||| |||||| ||| || ||| ||||||||||||||| || ||||||||| |
Sbjct: 267 gaagaaaaaccaaagtacagcggctcaagacagagcgtttcaagatcattgtgaagt-tt 325
Query: 663 ttacgatcatactagcaggaga---actctatatttaccgttgccctg---taccagtag 716
|||| | || |||||||| ||| ||||||||||||||||||| || ||| |||||
Sbjct: 326 ttacaaccagactagcagaagatactctctatatttaccgttgccttgtactactagtag 385
Query: 717 ctaaagttcatgtgaatgttgttgtgtt----cccgcagctgcgacgccatggcctgcga 772
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct: 386 ctaaagttcatgtgaatgttgttgtgttcttccccgcagctgcgacgccatggcctgcaa 445
Query: 773 tgtgcatggtcttggctgctgcagctactgaaacttttgatggttttaac 822
|| ||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct: 446 tgcgcatgttcttggctgttgcagctactgaaacttttgatggttttaac 495
>gb|BF587927.1|BF587927 FM1_34_F02.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 462
Score = 398 bits (201), Expect = e-109
Identities = 213/217 (98%)
Strand = Plus / Plus
Query: 360 tggtccccaacaggatcaaggagtgccggtcctacccgctgtaccggttcgtgcgcgagg 419
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 tggtgcccaacaggatcaaggagtgccggtcctacccgctgtaccggttcgtgcgcgagg 64
Query: 420 aggtcggcaccgagtacctgaccggcgagaagacgaggtcgcccggcgaggagctgaaca 479
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 aggtcggcacccagtacctgaccggcgagaagacgaggtcgcccggcgaggagctgaaca 124
Query: 480 aggtgctcgtggccatcaaccagcgcaagcacatcgacccgctgctcgagtgcctcaagg 539
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 aggtgctggtggccatcaaccagcgcaagcacatcgacccgctgctcgagtgcctcaagg 184
Query: 540 agtggaacggcgagcccctgccgctctgctgagctgc 576
|||||||||||||||| ||||||||||||||||||||
Sbjct: 185 agtggaacggcgagccactgccgctctgctgagctgc 221
Score = 145 bits (73), Expect = 8e-033
Identities = 169/198 (85%), Gaps = 11/198 (5%)
Strand = Plus / Plus
Query: 603 gaaggaaaacaaaagtatagcagcacaaaacagagcgtttcaaggtcgttgtgaagtgct 662
|||| ||||| |||||| ||| || ||| ||||||||||||||| || ||||||||| |
Sbjct: 266 gaagaaaaaccaaagtacagcggctcaagacagagcgtttcaagatcattgtgaagt-tt 324
Query: 663 ttacgatcatactagcaggaga---actctatatttaccgttgccctg---taccagtag 716
|||| | || |||||||| ||| ||||||||||||||||||| || ||| |||||
Sbjct: 325 ttacaaccagactagcagaagatactctctatatttaccgttgccttgtactactagtag 384
Query: 717 ctaaagttcatgtgaatgttgttgtgttc----ccgcagctgcgacgccatggcctgcga 772
||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct: 385 ctaaagttcatgtgaatgttgttgtgttcttcaccgcagctgcgacgccatggcctgcaa 444
Query: 773 tgtgcatggtcttggctg 790
|||||||| |||||||||
Sbjct: 445 tgtgcatgttcttggctg 462
>gb|BG241551.1|BG241551 RHIZ2_17_A01.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 388
Score = 391 bits (197), Expect = e-107
Identities = 212/217 (97%)
Strand = Plus / Plus
Query: 360 tggtccccaacaggatcaaggagtgccggtcctacccgctgtaccggttcgtgcgcgagg 419
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 5 tggtgcccaacaggatcaaggagtgccggtcgtacccgctgtaccggttcgtgcgcgagg 64
Query: 420 aggtcggcaccgagtacctgaccggcgagaagacgaggtcgcccggcgaggagctgaaca 479
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 aggtcggcacccagtacctgaccggcgagaagacgaggtcgcccggcgaggagctgaaca 124
Query: 480 aggtgctcgtggccatcaaccagcgcaagcacatcgacccgctgctcgagtgcctcaagg 539
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 aggtgctggtggccatcaaccagcgcaagcacatcgacccgctgctcgagtgcctcaagg 184
Query: 540 agtggaacggcgagcccctgccgctctgctgagctgc 576
|||||||||||||||| ||||||||||||||||||||
Sbjct: 185 agtggaacggcgagccactgccgctctgctgagctgc 221
Score = 58.0 bits (29), Expect = 1e-006
Identities = 92/111 (82%), Gaps = 4/111 (3%)
Strand = Plus / Plus
Query: 603 gaaggaaaacaaaagtatagcagcacaaaacagagcgtttcaaggtcgttgtgaagtgct 662
|||| ||||| |||||| ||| || ||| ||||||||||||||| || ||||||||| |
Sbjct: 266 gaagaaaaaccaaagtacagcggctcaagacagagcgtttcaagatcattgtgaagt-tt 324
Query: 663 ttacgatcatactagcaggaga---actctatatttaccgttgccctgtac 710
|||| | || |||||||| ||| ||||||||||||||||||| |||||
Sbjct: 325 ttacaaccagactagcagaagatactctctatatttaccgttgccttgtac 375
>gb|CW300537.1|CW300537 104_784_11463715_116_36253_080 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11463715, DNA
sequence
Length = 735
Score = 345 bits (174), Expect = 4e-093
Identities = 236/251 (94%), Gaps = 5/251 (1%)
Strand = Plus / Minus
Query: 7 gagaacgtgaaggccgcggtgaagaactn-gtgacgcaggtggccaagaagtccctgagc 65
|||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 256 gagaacgtgaaggccgcggtgaagaactgcgtgacgcaggtggccaagaagtcgctgagc 197
Query: 66 ctgaacgccaggggcgg-ctccacaacgcgcgcttctgcgagaaggacctgcagacggcg 124
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 ctgaacgccaggggcgggctccacaacgcgcgcttctgcgagaaggacctgcagacggcg 137
Query: 125 atcngaccgcgaggcggtgtttncgtacgcggacgacccgtgcagcccccaactacgcgc 184
||| ||||| ||||||||||| |||||||||||||||||||||| |||||||||| |||
Sbjct: 136 atc-gaccgggaggcggtgttcgcgtacgcggacgacccgtgcag-ccccaactacccgc 79
Query: 185 tgatgcagaaantccgcgcggtgctggtcgagcacgcgctggccaaacggcgacgccgag 244
|||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct: 78 tgatgcagaagctccgcgcggtgctgatcgagcacgcgctggcc-aacggcgacgccgag 20
Query: 245 cgcgacgtgga 255
|||| ||||||
Sbjct: 19 cgcgtcgtgga 9
>gb|AW922566.1|AW922566 DG1_45_G07.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 309
Score = 319 bits (161), Expect = 2e-085
Identities = 173/177 (97%)
Strand = Plus / Plus
Query: 400 gtaccggttcgtgcgcgaggaggtcggcaccgagtacctgaccggcgagaagacgaggtc 459
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 1 gtaccggttcgtgcgcgaggaggtcggcacccagtacctgaccggcgagaagacgaggtc 60
Query: 460 gcccggcgaggagctgaacaaggtgctcgtggccatcaaccagcgcaagcacatcgaccc 519
||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct: 61 gcccggcgaggagctgaacaaggtgctggtggccatcaaccagcgcaagcacgtcgaccc 120
Query: 520 gctgctcgagtgcctcaaggagtggaacggcgagcccctgccgctctgctgagctgc 576
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 121 gctgctcgagtgcctcaaggagtggaacggcgagccactgccgctctgctgagctgc 177
Score = 50.1 bits (25), Expect = 3e-004
Identities = 49/57 (85%)
Strand = Plus / Plus
Query: 603 gaaggaaaacaaaagtatagcagcacaaaacagagcgtttcaaggtcgttgtgaagt 659
|||| ||||| |||||| ||| || ||| ||||||||||||||| || |||||||||
Sbjct: 222 gaagaaaaaccaaagtacagcggctcaagacagagcgtttcaagatcattgtgaagt 278
>gb|CW380095.1|CW380095 fsbb001f059l10k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f059l10, DNA
sequence
Length = 659
Score = 281 bits (142), Expect = 5e-074
Identities = 163/170 (95%)
Strand = Plus / Minus
Query: 407 ttcgtgcgcgaggaggtcggcaccgagtacctgaccggcgagaagacgaggtcgcccggc 466
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct: 659 ttcgtgcgcgaggaggtcggcacccagtacctgaccggcgagaagacgaggtcgcccgcc 600
Query: 467 gaggagctgaacaaggtgctcgtggccatcaaccagcgcaagcacatcgacccgctgctc 526
|||||||||| ||||||||| |||||||||| ||||||||||||| ||||||||||||||
Sbjct: 599 gaggagctgatcaaggtgctggtggccatcagccagcgcaagcacgtcgacccgctgctc 540
Query: 527 gagtgcctcaaggagtggaacggcgagcccctgccgctctgctgagctgc 576
||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 539 gagtgcctcaaggagtggaacggcgagccactgccgctctgctgagctgc 490
Score = 196 bits (99), Expect = 2e-048
Identities = 199/229 (86%), Gaps = 10/229 (4%)
Strand = Plus / Minus
Query: 603 gaaggaaaacaaaagtatagcagcacaaaacagagcgtttcaaggtcgttgtgaagtgct 662
|||| ||||| |||||| ||| || ||| ||||||||||||||| || ||||||||| |
Sbjct: 445 gaagaaaaaccaaagtacagcggctcaagacagagcgtttcaagatcattgtgaagt-tt 387
Query: 663 ttacgatcatactagcaggaga---actctatatttaccgttgccctg---taccagtag 716
|||| | || |||||||| ||| ||||||||||||||||||| || ||| |||||
Sbjct: 386 ttacaaccagactagcagaagatactctctatatttaccgttgccttgtactactagtag 327
Query: 717 ctaaagttcatgtgaatgttgttgtg---ttcccgcagctgcgacgccatggcctgcgat 773
|||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct: 326 ctaaagttcatgtgaatgttgttgtgttcttcccgcagctgcgacgccatggcctgcaat 267
Query: 774 gtgcatggtcttggctgctgcagctactgaaacttttgatggttttaac 822
| ||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct: 266 gcgcatgttcttggctgttgcagctactgaaacttttgatggttttaac 218
>gb|CL164480.1|CL164480 104_358_10807939_114_31814_307 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10807939, DNA
sequence
Length = 754
Score = 268 bits (135), Expect = 8e-070
Identities = 394/477 (82%), Gaps = 3/477 (0%)
Strand = Plus / Minus
Query: 95 cgcttctgcgagaaggacctgcagacggcgatcngaccgcgaggcggtgtttncgtacgc 154
|||||||||||||||||||||| || |||| || |||||||| ||||| |||| ||
Sbjct: 626 cgcttctgcgagaaggacctgctccaggagatc-gagcgcgaggccgtgttcgcgtatgc 568
Query: 155 ggacgacccgtgcagcccccaactacgcgctgatgcagaaantccgcgcggtgctggtcg 214
|||||||| |||||| || |||||| |||| ||| |||| | ||| ||||| || |
Sbjct: 567 cgacgacccctgcagcgcc-aactacccgctcatgaagaagcttcgcaacgtgctcgtgg 509
Query: 215 agcacgcgctggccaaacggcgacgccgagcgcgacgtggacacgtccatcttcgccaag 274
||| ||| || ||||| ||||| |||||| ||||| || || ||| |||||||||||
Sbjct: 508 agcgcgccctcgccaa-cggcgctgccgagttcgacgccgagacatccgtcttcgccaag 450
Query: 275 gtggccgagttcgagcagcaggtccgcgcggcgctgcccaaggaggtggaagccgcgcgc 334
|| ||| |||||||| || || | ||||||||||||||||||| || || || || ||
Sbjct: 449 gtcgcccagttcgaggaggagctgcgcgcggcgctgcccaaggccgtcgaggctgcacgg 390
Query: 335 gcggccgtggagaacggcagccctctggtccccaacaggatcaaggagtgccggtcctac 394
|||||||| |||||||||| | | | | |||||||| |||| |||||||| ||||||
Sbjct: 389 gcggccgtcgagaacggcaccgcagcgatacccaacagaatcaccgagtgccgctcctac 330
Query: 395 ccgctgtaccggttcgtgcgcgaggaggtcggcaccgagtacctgaccggcgagaagacg 454
||||| ||||| ||||||||| |||||||||| ||| ||||| |||||||||||||||
Sbjct: 329 ccgctctaccgcttcgtgcgccaggaggtcggagccgtctacctcaccggcgagaagacg 270
Query: 455 aggtcgcccggcgaggagctgaacaaggtgctcgtggccatcaaccagcgcaagcacatc 514
| || |||||||||||||| |||||||||||||| |||||||||||| | || ||||||
Sbjct: 269 cgctctcccggcgaggagctcaacaaggtgctcgttgccatcaaccaggggaaacacatc 210
Query: 515 gacccgctgctcgagtgcctcaaggagtggaacggcgagcccctgccgctctgctga 571
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct: 209 gacccgctgctcgagtgcctcaaggagtggaacggcgagccactgcccatctgctga 153
>gb|CW091315.1|CW091315 104_453_10998477_114_33030_093 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10998477, DNA
sequence
Length = 672
Score = 268 bits (135), Expect = 8e-070
Identities = 394/477 (82%), Gaps = 3/477 (0%)
Strand = Plus / Minus
Query: 95 cgcttctgcgagaaggacctgcagacggcgatcngaccgcgaggcggtgtttncgtacgc 154
|||||||||||||||||||||| || |||| || |||||||| ||||| |||| ||
Sbjct: 626 cgcttctgcgagaaggacctgctccaggagatc-gagcgcgaggccgtgttcgcgtatgc 568
Query: 155 ggacgacccgtgcagcccccaactacgcgctgatgcagaaantccgcgcggtgctggtcg 214
|||||||| |||||| || |||||| |||| ||| |||| | ||| ||||| || |
Sbjct: 567 cgacgacccctgcagcgcc-aactacccgctcatgaagaagcttcgcaacgtgctcgtgg 509
Query: 215 agcacgcgctggccaaacggcgacgccgagcgcgacgtggacacgtccatcttcgccaag 274
||| ||| || ||||| ||||| |||||| ||||| || || ||| |||||||||||
Sbjct: 508 agcgcgccctcgccaa-cggcgctgccgagttcgacgccgagacatccgtcttcgccaag 450
Query: 275 gtggccgagttcgagcagcaggtccgcgcggcgctgcccaaggaggtggaagccgcgcgc 334
|| ||| |||||||| || || | ||||||||||||||||||| || || || || ||
Sbjct: 449 gtcgcccagttcgaggaggagctgcgcgcggcgctgcccaaggccgtcgaggctgcacgg 390
Query: 335 gcggccgtggagaacggcagccctctggtccccaacaggatcaaggagtgccggtcctac 394
|||||||| |||||||||| | | | | |||||||| |||| |||||||| ||||||
Sbjct: 389 gcggccgtcgagaacggcaccgcagcgatacccaacagaatcaccgagtgccgctcctac 330
Query: 395 ccgctgtaccggttcgtgcgcgaggaggtcggcaccgagtacctgaccggcgagaagacg 454
||||| ||||| ||||||||| |||||||||| ||| ||||| |||||||||||||||
Sbjct: 329 ccgctctaccgcttcgtgcgccaggaggtcggagccgtctacctcaccggcgagaagacg 270
Query: 455 aggtcgcccggcgaggagctgaacaaggtgctcgtggccatcaaccagcgcaagcacatc 514
| || |||||||||||||| |||||||||||||| |||||||||||| | || ||||||
Sbjct: 269 cgctctcccggcgaggagctcaacaaggtgctcgttgccatcaaccaggggaaacacatc 210
Query: 515 gacccgctgctcgagtgcctcaaggagtggaacggcgagcccctgccgctctgctga 571
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct: 209 gacccgctgctcgagtgcctcaaggagtggaacggcgagccactgcccatctgctga 153
>gb|BE358396.1|BE358396 DG1_29_B04.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 666
Score = 268 bits (135), Expect = 8e-070
Identities = 394/477 (82%), Gaps = 3/477 (0%)
Strand = Plus / Plus
Query: 95 cgcttctgcgagaaggacctgcagacggcgatcngaccgcgaggcggtgtttncgtacgc 154
|||||||||||||||||||||| || |||| || |||||||| ||||| |||| ||
Sbjct: 157 cgcttctgcgagaaggacctgctccaggagatc-gagcgcgaggccgtgttcgcgtatgc 215
Query: 155 ggacgacccgtgcagcccccaactacgcgctgatgcagaaantccgcgcggtgctggtcg 214
|||||||| |||||| || |||||| |||| ||| |||| | ||| ||||| || |
Sbjct: 216 cgacgacccctgcagcgcc-aactacccgctcatgaagaagcttcgcaacgtgctcgtgg 274
Query: 215 agcacgcgctggccaaacggcgacgccgagcgcgacgtggacacgtccatcttcgccaag 274
||| ||| || ||||| ||||| |||||| ||||| || || ||| |||||||||||
Sbjct: 275 agcgcgccctcgccaa-cggcgctgccgagttcgacgccgagacatccgtcttcgccaag 333
Query: 275 gtggccgagttcgagcagcaggtccgcgcggcgctgcccaaggaggtggaagccgcgcgc 334
|| ||| |||||||| || || | ||||||||||||||||||| || || || || ||
Sbjct: 334 gtcgcccagttcgaggaggagctgcgcgcggcgctgcccaaggccgtcgaggctgcacgg 393
Query: 335 gcggccgtggagaacggcagccctctggtccccaacaggatcaaggagtgccggtcctac 394
|||||||| |||||||||| | | | | |||||||| |||| |||||||| ||||||
Sbjct: 394 gcggccgtcgagaacggcaccgcagcgatacccaacagaatcaccgagtgccgctcctac 453
Query: 395 ccgctgtaccggttcgtgcgcgaggaggtcggcaccgagtacctgaccggcgagaagacg 454
||||| ||||| ||||||||| |||||||||| ||| ||||| |||||||||||||||
Sbjct: 454 ccgctctaccgcttcgtgcgccaggaggtcggagccgtctacctcaccggcgagaagacg 513
Query: 455 aggtcgcccggcgaggagctgaacaaggtgctcgtggccatcaaccagcgcaagcacatc 514
| || |||||||||||||| |||||||||||||| |||||||||||| | || ||||||
Sbjct: 514 cgctctcccggcgaggagctcaacaaggtgctcgttgccatcaaccaggggaaacacatc 573
Query: 515 gacccgctgctcgagtgcctcaaggagtggaacggcgagcccctgccgctctgctga 571
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct: 574 gacccgctgctcgagtgcctcaaggagtggaacggcgagccactgcccatctgctga 630
>gb|CW150734.1|CW150734 104_551_11143570_148_36313_043 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11143570, DNA
sequence
Length = 652
Score = 264 bits (133), Expect = 1e-068
Identities = 228/257 (88%), Gaps = 2/257 (0%)
Strand = Plus / Minus
Query: 316 ggaggtggaagccgcgcgcgcggccgtggagaacggca-gccctctggtccccaacagga 374
||||||||| || || |||||| ||||||||||||||| | || | ||| || |||||||
Sbjct: 646 ggaggtggacgcggcccgcgcgtccgtggagaacggcacggccgc-ggtaccgaacagga 588
Query: 375 tcaaggagtgccggtcctacccgctgtaccggttcgtgcgcgaggaggtcggcaccgagt 434
|| ||||||||||| |||||||||||| ||||||||||||||||| ||||||| ||||
Sbjct: 587 tcgccgagtgccggtcgtacccgctgtacaggttcgtgcgcgaggagctcggcacggagt 528
Query: 435 acctgaccggcgagaagacgaggtcgcccggcgaggagctgaacaaggtgctcgtggcca 494
|||||||||| ||||||||||||||||||||||||||| ||||||||||| ||||||| |
Sbjct: 527 acctgaccggggagaagacgaggtcgcccggcgaggaggtgaacaaggtgttcgtggcga 468
Query: 495 tcaaccagcgcaagcacatcgacccgctgctcgagtgcctcaaggagtggaacggcgagc 554
| |||| | |||||||||||||| | |||||||||||||||||||||||||||| ||||
Sbjct: 467 tgaacctgggcaagcacatcgacgccgtgctcgagtgcctcaaggagtggaacggtgagc 408
Query: 555 ccctgccgctctgctga 571
|||||||| ||||||||
Sbjct: 407 ccctgccgatctgctga 391
>gb|CW176959.1|CW176959 104_590_11158763_148_36591_046 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11158763, DNA
sequence
Length = 609
Score = 262 bits (132), Expect = 5e-068
Identities = 264/308 (85%)
Strand = Plus / Minus
Query: 264 tcttcgccaaggtggccgagttcgagcagcaggtccgcgcggcgctgcccaaggaggtgg 323
||||||||||||| ||| |||||||| || || | ||||||||||||||||||| || |
Sbjct: 530 tcttcgccaaggtcgcccagttcgaggaggagctgcgcgcggcgctgcccaaggccgtcg 471
Query: 324 aagccgcgcgcgcggccgtggagaacggcagccctctggtccccaacaggatcaaggagt 383
| || || || |||||||| |||||||||| | | | | |||||||| |||| ||||
Sbjct: 470 aggctgcacgggcggccgtcgagaacggcaccgcagcgatacccaacagaatcaccgagt 411
Query: 384 gccggtcctacccgctgtaccggttcgtgcgcgaggaggtcggcaccgagtacctgaccg 443
|||| ||||||||||| ||||| ||||||||| |||||||||| ||| ||||| ||||
Sbjct: 410 gccgctcctacccgctctaccgcttcgtgcgccaggaggtcggagccgtctacctcaccg 351
Query: 444 gcgagaagacgaggtcgcccggcgaggagctgaacaaggtgctcgtggccatcaaccagc 503
||||||||||| | || |||||||||||||| |||||||||||||| ||||||||||||
Sbjct: 350 gcgagaagacgcgctctcccggcgaggagctcaacaaggtgctcgttgccatcaaccagg 291
Query: 504 gcaagcacatcgacccgctgctcgagtgcctcaaggagtggaacggcgagcccctgccgc 563
| || ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 290 ggaaacacatcgacccgctgctcgagtgcctcaaggagtggaacggcgagccactgccca 231
Query: 564 tctgctga 571
||||||||
Sbjct: 230 tctgctga 223
>gb|BE358841.1|BE358841 DG1_32_D06.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 627
Score = 262 bits (132), Expect = 5e-068
Identities = 264/308 (85%)
Strand = Plus / Plus
Query: 264 tcttcgccaaggtggccgagttcgagcagcaggtccgcgcggcgctgcccaaggaggtgg 323
||||||||||||| ||| |||||||| || || | ||||||||||||||||||| || |
Sbjct: 137 tcttcgccaaggtcgcccagttcgaggaggagctgcgcgcggcgctgcccaaggccgtcg 196
Query: 324 aagccgcgcgcgcggccgtggagaacggcagccctctggtccccaacaggatcaaggagt 383
| || || || |||||||| |||||||||| | | | | |||||||| |||| ||||
Sbjct: 197 aggctgcacgggcggccgtcgagaacggcaccgcagcgatacccaacagaatcaccgagt 256
Query: 384 gccggtcctacccgctgtaccggttcgtgcgcgaggaggtcggcaccgagtacctgaccg 443
|||| ||||||||||| ||||| ||||||||| |||||||||| ||| ||||| ||||
Sbjct: 257 gccgctcctacccgctctaccgcttcgtgcgccaggaggtcggagccgtctacctcaccg 316
Query: 444 gcgagaagacgaggtcgcccggcgaggagctgaacaaggtgctcgtggccatcaaccagc 503
||||||||||| | || |||||||||||||| |||||||||||||| ||||||||||||
Sbjct: 317 gcgagaagacgcgctctcccggcgaggagctcaacaaggtgctcgttgccatcaaccagg 376
Query: 504 gcaagcacatcgacccgctgctcgagtgcctcaaggagtggaacggcgagcccctgccgc 563
| || ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 377 ggaaacacatcgacccgctgctcgagtgcctcaaggagtggaacggcgagccactgccca 436
Query: 564 tctgctga 571
||||||||
Sbjct: 437 tctgctga 444
>gb|BE360494.1|BE360494 DG1_63_B03.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 517
Score = 262 bits (132), Expect = 5e-068
Identities = 264/308 (85%)
Strand = Plus / Plus
Query: 264 tcttcgccaaggtggccgagttcgagcagcaggtccgcgcggcgctgcccaaggaggtgg 323
||||||||||||| ||| |||||||| || || | ||||||||||||||||||| || |
Sbjct: 128 tcttcgccaaggtcgcccagttcgaggaggagctgcgcgcggcgctgcccaaggccgtcg 187
Query: 324 aagccgcgcgcgcggccgtggagaacggcagccctctggtccccaacaggatcaaggagt 383
| || || || |||||||| |||||||||| | | | | |||||||| |||| ||||
Sbjct: 188 aggctgcacgggcggccgtcgagaacggcaccgcagcgatacccaacagaatcaccgagt 247
Query: 384 gccggtcctacccgctgtaccggttcgtgcgcgaggaggtcggcaccgagtacctgaccg 443
|||| ||||||||||| ||||| ||||||||| |||||||||| ||| ||||| ||||
Sbjct: 248 gccgctcctacccgctctaccgcttcgtgcgccaggaggtcggagccgtctacctcaccg 307
Query: 444 gcgagaagacgaggtcgcccggcgaggagctgaacaaggtgctcgtggccatcaaccagc 503
||||||||||| | || |||||||||||||| |||||||||||||| ||||||||||||
Sbjct: 308 gcgagaagacgcgctctcccggcgaggagctcaacaaggtgctcgttgccatcaaccagg 367
Query: 504 gcaagcacatcgacccgctgctcgagtgcctcaaggagtggaacggcgagcccctgccgc 563
| || ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 368 ggaaacacatcgacccgctgctcgagtgcctcaaggagtggaacggcgagccactgccca 427
Query: 564 tctgctga 571
||||||||
Sbjct: 428 tctgctga 435
>gb|BE918444.1|BE918444 OV1_3_G09.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence
Length = 629
Score = 262 bits (132), Expect = 5e-068
Identities = 264/308 (85%)
Strand = Plus / Plus
Query: 264 tcttcgccaaggtggccgagttcgagcagcaggtccgcgcggcgctgcccaaggaggtgg 323
||||||||||||| ||| |||||||| || || | ||||||||||||||||||| || |
Sbjct: 144 tcttcgccaaggtcgcccagttcgaggaggagctgcgcgcggcgctgcccaaggccgtcg 203
Query: 324 aagccgcgcgcgcggccgtggagaacggcagccctctggtccccaacaggatcaaggagt 383
| || || || |||||||| |||||||||| | | | | |||||||| |||| ||||
Sbjct: 204 aggctgcacgggcggccgtcgagaacggcaccgcagcgatacccaacagaatcaccgagt 263
Query: 384 gccggtcctacccgctgtaccggttcgtgcgcgaggaggtcggcaccgagtacctgaccg 443
|||| ||||||||||| ||||| ||||||||| |||||||||| ||| ||||| ||||
Sbjct: 264 gccgctcctacccgctctaccgcttcgtgcgccaggaggtcggagccgtctacctcaccg 323
Query: 444 gcgagaagacgaggtcgcccggcgaggagctgaacaaggtgctcgtggccatcaaccagc 503
||||||||||| | || |||||||||||||| |||||||||||||| ||||||||||||
Sbjct: 324 gcgagaagacgcgctctcccggcgaggagctcaacaaggtgctcgttgccatcaaccagg 383
Query: 504 gcaagcacatcgacccgctgctcgagtgcctcaaggagtggaacggcgagcccctgccgc 563
| || ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 384 ggaaacacatcgacccgctgctcgagtgcctcaaggagtggaacggcgagccactgccca 443
Query: 564 tctgctga 571
||||||||
Sbjct: 444 tctgctga 451
>gb|BE364574.2|BE364574 PI1_15_H09.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 575
Score = 262 bits (132), Expect = 5e-068
Identities = 264/308 (85%)
Strand = Plus / Plus
Query: 264 tcttcgccaaggtggccgagttcgagcagcaggtccgcgcggcgctgcccaaggaggtgg 323
||||||||||||| ||| |||||||| || || | ||||||||||||||||||| || |
Sbjct: 43 tcttcgccaaggtcgcccagttcgaggaggagctgcgcgcggcgctgcccaaggccgtcg 102
Query: 324 aagccgcgcgcgcggccgtggagaacggcagccctctggtccccaacaggatcaaggagt 383
| || || || |||||||| |||||||||| | | | | |||||||| |||| ||||
Sbjct: 103 aggctgcacgggcggccgtcgagaacggcaccgcagcgatacccaacagaatcaccgagt 162
Query: 384 gccggtcctacccgctgtaccggttcgtgcgcgaggaggtcggcaccgagtacctgaccg 443
|||| ||||||||||| ||||| ||||||||| |||||||||| ||| ||||| ||||
Sbjct: 163 gccgctcctacccgctctaccgcttcgtgcgccaggaggtcggagccgtctacctcaccg 222
Query: 444 gcgagaagacgaggtcgcccggcgaggagctgaacaaggtgctcgtggccatcaaccagc 503
||||||||||| | || |||||||||||||| |||||||||||||| ||||||||||||
Sbjct: 223 gcgagaagacgcgctctcccggcgaggagctcaacaaggtgctcgttgccatcaaccagg 282
Query: 504 gcaagcacatcgacccgctgctcgagtgcctcaaggagtggaacggcgagcccctgccgc 563
| || ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 283 ggaaacacatcgacccgctgctcgagtgcctcaaggagtggaacggcgagccactgccca 342
Query: 564 tctgctga 571
||||||||
Sbjct: 343 tctgctga 350
>gb|CW460987.1|CW460987 fsbb001f208h04k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f208h04, DNA
sequence
Length = 763
Score = 254 bits (128), Expect = 1e-065
Identities = 176/192 (91%)
Strand = Plus / Minus
Query: 380 gagtgccggtcctacccgctgtaccggttcgtgcgcgaggaggtcggcaccgagtacctg 439
||||||||||| |||||||||||| ||||||||||||||||| ||||||| |||||||||
Sbjct: 707 gagtgccggtcgtacccgctgtacaggttcgtgcgcgaggagctcggcacggagtacctg 648
Query: 440 accggcgagaagacgaggtcgcccggcgaggagctgaacaaggtgctcgtggccatcaac 499
||||| ||||||||||||||||||||||||||| ||||||||||| ||||||| || |||
Sbjct: 647 accggggagaagacgaggtcgcccggcgaggaggtgaacaaggtgttcgtggcgatgaac 588
Query: 500 cagcgcaagcacatcgacccgctgctcgagtgcctcaaggagtggaacggcgagcccctg 559
| | |||||||||||||| | |||||||||||||||||||||||||||| |||||||||
Sbjct: 587 ctgggcaagcacatcgacgccgtgctcgagtgcctcaaggagtggaacggtgagcccctg 528
Query: 560 ccgctctgctga 571
||| ||||||||
Sbjct: 527 ccgatctgctga 516
>gb|DN551872.1|DN551872 pSPR-RT-MR-H1_G04_C276 pSPR Sorghum propinquum cDNA, mRNA sequence
Length = 1191
Score = 252 bits (127), Expect = 5e-065
Identities = 392/477 (82%), Gaps = 3/477 (0%)
Strand = Plus / Minus
Query: 95 cgcttctgcgagaaggacctgcagacggcgatcngaccgcgaggcggtgtttncgtacgc 154
|||||||||||||||||||||| || |||| || |||||||| ||||| |||| ||
Sbjct: 703 cgcttctgcgagaaggacctgctccaggagatc-gagcgcgaggccgtgttcgcgtatgc 645
Query: 155 ggacgacccgtgcagcccccaactacgcgctgatgcagaaantccgcgcggtgctggtcg 214
|||||||| |||||| || |||||| |||| ||| |||| | ||| ||||| || |
Sbjct: 644 cgacgacccctgcagcgcc-aactacccgctcatgaagaagcttcgcaacgtgctcgtgg 586
Query: 215 agcacgcgctggccaaacggcgacgccgagcgcgacgtggacacgtccatcttcgccaag 274
||| ||| || ||||| ||||| |||||| ||||| || || ||| |||||||||||
Sbjct: 585 agcgcgccctcgccaa-cggcgctgccgagttcgacgccgagacatccgtcttcgccaag 527
Query: 275 gtggccgagttcgagcagcaggtccgcgcggcgctgcccaaggaggtggaagccgcgcgc 334
|| ||| | |||||| || || | ||||||||||||||||||| || || || || ||
Sbjct: 526 gtcgcccacttcgaggaggagctgcgcgcggcgctgcccaaggccgtcgaggctgcacgg 467
Query: 335 gcggccgtggagaacggcagccctctggtccccaacaggatcaaggagtgccggtcctac 394
|||||||| |||||||||| | | | | |||||||| |||| |||||||| ||||||
Sbjct: 466 gcggccgtcgagaacggcaccgcagcgatacccaacagaatcaccgagtgccgctcctac 407
Query: 395 ccgctgtaccggttcgtgcgcgaggaggtcggcaccgagtacctgaccggcgagaagacg 454
||||| ||||| ||||||||| |||||||||| ||| ||||| |||||||||||||||
Sbjct: 406 ccgctctaccgcttcgtgcgccaggaggtcggagccgtctacctcaccggcgagaagacg 347
Query: 455 aggtcgcccggcgaggagctgaacaaggtgctcgtggccatcaaccagcgcaagcacatc 514
| || |||||||||||||| |||||||||||||| ||||||||| || | || ||||||
Sbjct: 346 cgctctcccggcgaggagctcaacaaggtgctcgttgccatcaacaaggggaaacacatc 287
Query: 515 gacccgctgctcgagtgcctcaaggagtggaacggcgagcccctgccgctctgctga 571
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct: 286 gacccgctgctcgagtgcctcaaggagtggaacggcgagccactgcccatctgctga 230
>gb|BG487962.1|BG487962 RHIZ2_61_D12.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 693
Score = 246 bits (124), Expect = 3e-063
Identities = 262/308 (85%)
Strand = Plus / Plus
Query: 264 tcttcgccaaggtggccgagttcgagcagcaggtccgcgcggcgctgcccaaggaggtgg 323
||||||||||||| ||| | |||||| || || | ||||||||||||||||||| || |
Sbjct: 139 tcttcgccaaggtcgcccacttcgaggaggagctgcgcgcggcgctgcccaaggccgtcg 198
Query: 324 aagccgcgcgcgcggccgtggagaacggcagccctctggtccccaacaggatcaaggagt 383
| || || || |||||||| |||||||||| | | | | |||||||| |||| ||||
Sbjct: 199 aggctgcacgggcggccgtcgagaacggcaccgcagcgatacccaacagaatcaccgagt 258
Query: 384 gccggtcctacccgctgtaccggttcgtgcgcgaggaggtcggcaccgagtacctgaccg 443
|||| ||||||||||| ||||| ||||||||| |||||||||| ||| ||||| ||||
Sbjct: 259 gccgctcctacccgctctaccgcttcgtgcgccaggaggtcggagccgtctacctcaccg 318
Query: 444 gcgagaagacgaggtcgcccggcgaggagctgaacaaggtgctcgtggccatcaaccagc 503
||||||||||| | || |||||||||||||| |||||||||||||| ||||||||| ||
Sbjct: 319 gcgagaagacgcgctctcccggcgaggagctcaacaaggtgctcgttgccatcaacaagg 378
Query: 504 gcaagcacatcgacccgctgctcgagtgcctcaaggagtggaacggcgagcccctgccgc 563
| || ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 379 ggaaacacatcgacccgctgctcgagtgcctcaaggagtggaacggcgagccactgccca 438
Query: 564 tctgctga 571
||||||||
Sbjct: 439 tctgctga 446
>gb|BE367374.1|BE367374 PI1_4_E12.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 326
Score = 230 bits (116), Expect = 2e-058
Identities = 128/132 (96%)
Strand = Plus / Plus
Query: 445 cgagaagacgaggtcgcccggcgaggagctgaacaaggtgctcgtggccatcaaccagcg 504
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1 cgagaagacgaggtcgcccggcgaggagctgaacaaggtgctggtggccatcaaccagcg 60
Query: 505 caagcacatcgacccgctgctcgagtgcctcaaggagtggaacggcgagcccctgccgct 564
||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 61 caagcacgtcgacccgctgctcgagtgcctcaaggagtggaacggcgagccactgccgct 120
Query: 565 ctgctgagctgc 576
|||||||||||
Sbjct: 121 ttgctgagctgc 132
Score = 91.7 bits (46), Expect = 1e-016
Identities = 117/138 (84%), Gaps = 7/138 (5%)
Strand = Plus / Plus
Query: 614 aaagtatagcagcacaaaacagagcgtttcaaggtcgttgtgaagtgctttacgatcata 673
|||||| ||| || ||| ||||||||||||||| || ||||||||| ||||| | || |
Sbjct: 188 aaagtacagcggctcaagacagagcgtttcaagatcattgtgaagt-ttttacaaccaga 246
Query: 674 ctagcaggaga---actctatatttaccgttgccctg---taccagtagctaaagttcat 727
||||||| ||| ||||||||||||||||||| || ||| ||||||||||||||||
Sbjct: 247 ctagcagaagatactctctatatttaccgttgccttgtactactagtagctaaagttcat 306
Query: 728 gtgaatgttgttgtgttc 745
||||||||||||||||||
Sbjct: 307 gtgaatgttgttgtgttc 324
>gb|BG558058.1|BG558058 RHIZ2_66_B02.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 426
Score = 224 bits (113), Expect = 1e-056
Identities = 230/269 (85%)
Strand = Plus / Plus
Query: 303 cggcgctgcccaaggaggtggaagccgcgcgcgcggccgtggagaacggcagccctctgg 362
||||||||||||||| || || || || || |||||||| |||||||||| | | |
Sbjct: 1 cggcgctgcccaaggccgtcgaggctgcacgggcggccgtcgagaacggcaccgcagcga 60
Query: 363 tccccaacaggatcaaggagtgccggtcctacccgctgtaccggttcgtgcgcgaggagg 422
| |||||||| |||| |||||||| ||||||||||| ||||| ||||||||| ||||||
Sbjct: 61 tacccaacagaatcaccgagtgccgctcctacccgctctaccgcttcgtgcgccaggagg 120
Query: 423 tcggcaccgagtacctgaccggcgagaagacgaggtcgcccggcgaggagctgaacaagg 482
|||| ||| ||||| ||||||||||||||| | || |||||||||||||| |||||||
Sbjct: 121 tcggagccgtctacctcaccggcgagaagacgcgctctcccggcgaggagctcaacaagg 180
Query: 483 tgctcgtggccatcaaccagcgcaagcacatcgacccgctgctcgagtgcctcaaggagt 542
||||||| ||||||||| || | || ||||||||||||||||||||||||||||||||||
Sbjct: 181 tgctcgttgccatcaacaaggggaaacacatcgacccgctgctcgagtgcctcaaggagt 240
Query: 543 ggaacggcgagcccctgccgctctgctga 571
||||||||||||| ||||| ||||||||
Sbjct: 241 ggaacggcgagccactgcccatctgctga 269
>gb|BF481310.1|BF481310 FM1_18_D04.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 411
Score = 220 bits (111), Expect = 2e-055
Identities = 183/207 (88%)
Strand = Plus / Plus
Query: 365 cccaacaggatcaaggagtgccggtcctacccgctgtaccggttcgtgcgcgaggaggtc 424
|||||||| |||| |||||||| ||||||||||| ||||| ||||||||| ||||||||
Sbjct: 18 cccaacagaatcaccgagtgccgctcctacccgctctaccgcttcgtgcgccaggaggtc 77
Query: 425 ggcaccgagtacctgaccggcgagaagacgaggtcgcccggcgaggagctgaacaaggtg 484
|| ||| ||||| ||||||||||||||| | || |||||||||||||| |||||||||
Sbjct: 78 ggagccgtctacctcaccggcgagaagacgcgctctcccggcgaggagctcaacaaggtg 137
Query: 485 ctcgtggccatcaaccagcgcaagcacatcgacccgctgctcgagtgcctcaaggagtgg 544
||||| ||||||||| || | || ||||||||||||||||||||||||||||||||||||
Sbjct: 138 ctcgttgccatcaacaaggggaaacacatcgacccgctgctcgagtgcctcaaggagtgg 197
Query: 545 aacggcgagcccctgccgctctgctga 571
||||||||||| ||||| ||||||||
Sbjct: 198 aacggcgagccactgcccatctgctga 224
>gb|CW439402.1|CW439402 fsbb001f157i10k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f157i10, DNA
sequence
Length = 706
Score = 196 bits (99), Expect = 2e-048
Identities = 199/229 (86%), Gaps = 10/229 (4%)
Strand = Plus / Plus
Query: 603 gaaggaaaacaaaagtatagcagcacaaaacagagcgtttcaaggtcgttgtgaagtgct 662
|||| ||||| |||||| ||| || ||| ||||||||||||||| || ||||||||| |
Sbjct: 45 gaagaaaaaccaaagtacagcggctcaagacagagcgtttcaagatcattgtgaagt-tt 103
Query: 663 ttacgatcatactagcaggaga---actctatatttaccgttgccctg---taccagtag 716
|||| | || |||||||| ||| ||||||||||||||||||| || ||| |||||
Sbjct: 104 ttacaaccagactagcagaagatactctctatatttaccgttgccttgtactactagtag 163
Query: 717 ctaaagttcatgtgaatgttgttgtg---ttcccgcagctgcgacgccatggcctgcgat 773
|||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct: 164 ctaaagttcatgtgaatgttgttgtgttcttcccgcagctgcgacgccatggcctgcaat 223
Query: 774 gtgcatggtcttggctgctgcagctactgaaacttttgatggttttaac 822
| ||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct: 224 gcgcatgttcttggctgttgcagctactgaaacttttgatggttttaac 272
>gb|CW463400.1|CW463400 fsbb001f211p20f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f211p20, DNA
sequence
Length = 590
Score = 192 bits (97), Expect = 4e-047
Identities = 213/247 (86%), Gaps = 4/247 (1%)
Strand = Plus / Plus
Query: 44 ggtggccaagaagtccctgagcctgaacgccaggggcgg-ctccacaacgcgcgcttctg 102
||||||||||||| | |||||| | ||||| ||| || ||||||||||||||||||||
Sbjct: 347 ggtggccaagaagacgctgagcaccagcgccacgggtggcctccacaacgcgcgcttctg 406
Query: 103 cgagaaggacctgcagacggcgatcngaccgcgaggcggtgtttncgtacgcggacgacc 162
|||||||||||||| |||||||||| ||||||||||||||||| |||||||||||||||
Sbjct: 407 cgagaaggacctgctgacggcgatc-gaccgcgaggcggtgttcgcgtacgcggacgacc 465
Query: 163 cgtgcagcccccaactacgcgctgatgcagaaantccgcgcggtgctggtcgagcacgcg 222
| ||||| | |||||||| ||||||||||||| | || |||||||||| |||||||||
Sbjct: 466 cctgcag-cgccaactacccgctgatgcagaagatgcggtcggtgctggtggagcacgcg 524
Query: 223 ctggccaaacggcgacgccgagcgcgacgtggacacgtccatcttcgccaaggtggccga 282
|||||| |||||||| || ||||||||| ||| ||||| | |||||||||||||||
Sbjct: 525 ctggcc-aacggcgaggcggagcgcgacccggagacgtcggtgttcgccaaggtggccac 583
Query: 283 gttcgag 289
|||||||
Sbjct: 584 gttcgag 590
>gb|CW221367.1|CW221367 104_656_11197867_116_37452_074 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11197867, DNA
sequence
Length = 640
Score = 180 bits (91), Expect = 1e-043
Identities = 160/182 (87%), Gaps = 1/182 (0%)
Strand = Plus / Minus
Query: 380 gagtgccggtcctacccgctgtacc-ggttcgtgcgcgaggaggtcggcaccgagtacct 438
|||||||| || |||||||||||| ||||||||||||||||| ||||| ||||||||||
Sbjct: 361 gagtgccgctcgtacccgctgtacnaggttcgtgcgcgaggagctcggcgccgagtacct 302
Query: 439 gaccggcgagaagacgaggtcgcccggcgaggagctgaacaaggtgctcgtggccatcaa 498
|||||||||||||||| |||||||||| |||||| || |||||||| | | ||||| ||
Sbjct: 301 gaccggcgagaagacgcggtcgcccggggaggaggtggacaaggtggtgatcgccatgaa 242
Query: 499 ccagcgcaagcacatcgacccgctgctcgagtgcctcaaggagtggaacggcgagcccct 558
||||||||||||||||||||| ||||| |||||||||| || ||||| |||| ||||||
Sbjct: 241 ccagcgcaagcacatcgacccactgctggagtgcctcagcgactggaaaggcgcgcccct 182
Query: 559 gc 560
||
Sbjct: 181 gc 180
Score = 99.6 bits (50), Expect = 4e-019
Identities = 83/94 (88%)
Strand = Plus / Minus
Query: 260 tccatcttcgccaaggtggccgagttcgagcagcaggtccgcgcggcgctgcccaaggag 319
|||||| | ||||||||||| ||||||||||||||| ||||||||| ||||||| | |||
Sbjct: 475 tccatcctggccaaggtggctgagttcgagcagcagctccgcgcggtgctgcccgacgag 416
Query: 320 gtggaagccgcgcgcgcggccgtggagaacggca 353
||||| ||||| |||||||| ||||||| |||||
Sbjct: 415 gtggaggccgcacgcgcggctgtggagagcggca 382
Score = 46.1 bits (23), Expect = 0.005
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 132 cgcgaggcggtgtttncgtacgcggacgacccgtgcag 169
|||| ||||||||| |||||||||| |||||||||||
Sbjct: 598 cgcgtggcggtgttcacgtacgcggaggacccgtgcag 561
>gb|CW246218.1|CW246218 104_707_11221250_116_35083_013 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11221250, DNA
sequence
Length = 666
Score = 178 bits (90), Expect = 5e-043
Identities = 331/408 (81%), Gaps = 3/408 (0%)
Strand = Plus / Minus
Query: 95 cgcttctgcgagaaggacctgcagacggcgatcngaccgcgaggcggtgtttncgtacgc 154
|||||||||||||||||||||| || |||| || |||||||| ||||| |||| ||
Sbjct: 412 cgcttctgcgagaaggacctgctccaggagatc-gagcgcgaggccgtgttcgcgtatgc 354
Query: 155 ggacgacccgtgcagcccccaactacgcgctgatgcagaaantccgcgcggtgctggtcg 214
|||||||| |||||| || |||||| |||| ||| |||| | ||| ||||| || |
Sbjct: 353 cgacgacccctgcagcgcc-aactacccgctcatgaagaagcttcgcaacgtgctcgtgg 295
Query: 215 agcacgcgctggccaaacggcgacgccgagcgcgacgtggacacgtccatcttcgccaag 274
||| ||| || ||||| ||||| |||||| ||||| || || ||| |||||||||||
Sbjct: 294 agcgcgccctcgccaa-cggcgctgccgagttcgacgccgagacatccgtcttcgccaag 236
Query: 275 gtggccgagttcgagcagcaggtccgcgcggcgctgcccaaggaggtggaagccgcgcgc 334
|| ||| |||||||| || || | ||||||||||||||||||| || || || || ||
Sbjct: 235 gtcgcccagttcgaggaggagctgcgcgcggcgctgcccaaggccgtcgaggctgcacgg 176
Query: 335 gcggccgtggagaacggcagccctctggtccccaacaggatcaaggagtgccggtcctac 394
|||||||| |||||||||| | | | | |||||||| |||| |||||||| ||||||
Sbjct: 175 gcggccgtcgagaacggcaccgcagcgatacccaacagaatcaccgagtgccgctcctac 116
Query: 395 ccgctgtaccggttcgtgcgcgaggaggtcggcaccgagtacctgaccggcgagaagacg 454
||||| ||||| ||||||||| |||||||||| ||| ||||| |||||||||||||||
Sbjct: 115 ccgctctaccgcttcgtgcgccaggaggtcggagccgtctacctcaccggcgagaagacg 56
Query: 455 aggtcgcccggcgaggagctgaacaaggtgctcgtggccatcaaccag 502
| || |||||||||||||| |||||||||||||| ||||||||||||
Sbjct: 55 cgctctcccggcgaggagctcaacaaggtgctcgttgccatcaaccag 8
>gb|AW282772.1|AW282772 LG1_290_F07.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 237
Score = 172 bits (87), Expect = 3e-041
Identities = 130/143 (90%), Gaps = 6/143 (4%)
Strand = Plus / Plus
Query: 686 ctctatatttaccgttgccctgtacca---gtagctaaagttcatgtgaatgttgttgtg 742
||||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||
Sbjct: 57 ctctatatttaccgttgccttgtactactagtagctaaagttcatgtgaatgttgttgtg 116
Query: 743 ttc---ccgcagctgcgacgccatggcctgcgatgtgcatggtcttggctgctgcagcta 799
||| ||||||||||||||||||||||||| ||| ||||| | ||||||| ||||||||
Sbjct: 117 ttcttcccgcagctgcgacgccatggcctgcaatgcgcatgtttttggctgttgcagcta 176
Query: 800 ctgaaacttttgatggttttaac 822
|||||||||||||||||||||||
Sbjct: 177 ctgaaacttttgatggttttaac 199
>gb|CW300538.1|CW300538 104_784_11463715_148_36254_080 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11463715, DNA
sequence
Length = 723
Score = 168 bits (85), Expect = 5e-040
Identities = 115/123 (93%), Gaps = 2/123 (1%)
Strand = Plus / Plus
Query: 7 gagaacgtgaaggccgcggtgaagaactn-gtgacgcaggtggccaagaagtccctgagc 65
|||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||
Sbjct: 598 gagaacgtgaaggccgcggtgaagaactgcgtgacgcangtggccaagaagtcgctgagc 657
Query: 66 ctgaacgccaggggc-ggctccacaacgcgcgcttctgcgagaaggacctgcagacggcg 124
||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct: 658 ctgaacgccaggggcgggctcccacacgcgcgcttctgcgagaaggacctgcagacggcg 717
Query: 125 atc 127
|||
Sbjct: 718 atc 720
>gb|CD226116.1|CD226116 CCC1_43_C09.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_43_C09_A007 5', mRNA sequence
Length = 640
Score = 153 bits (77), Expect = 3e-035
Identities = 96/100 (96%), Gaps = 2/100 (2%)
Strand = Plus / Plus
Query: 7 gagaacgtgaaggccgcggtgaagaactn-gtgacgcaggtggccaagaagtccctgagc 65
|||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 541 gagaacgtgaaggccgcggtgaagaactgcgtgacgcaggtggccaagaagtcgctgagc 600
Query: 66 ctgaacgccaggggc-ggctccacaacgcgcgcttctgcg 104
||||||||||||||| ||||||||||||||||||||||||
Sbjct: 601 ctgaacgccaggggcgggctccacaacgcgcgcttctgcg 640
>gb|CW442302.1|CW442302 fsbb001f161o10k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f161o10, DNA
sequence
Length = 459
Score = 145 bits (73), Expect = 8e-033
Identities = 193/233 (82%)
Strand = Plus / Minus
Query: 264 tcttcgccaaggtggccgagttcgagcagcaggtccgcgcggcgctgcccaaggaggtgg 323
||||||||||||| ||| |||||||| || || | ||||||||||||||||||| || |
Sbjct: 233 tcttcgccaaggtcgcccagttcgaggaggagctgcgcgcggcgctgcccaaggccgtcg 174
Query: 324 aagccgcgcgcgcggccgtggagaacggcagccctctggtccccaacaggatcaaggagt 383
| || || || |||||||| |||| ||||| | | | | |||| ||| |||| ||||
Sbjct: 173 aggctgcacgggcggccgtcgagaccggcaccgcagcgatacccaccagaatcaccgagt 114
Query: 384 gccggtcctacccgctgtaccggttcgtgcgcgaggaggtcggcaccgagtacctgaccg 443
|||| ||||||||||| ||||| ||||||||| |||||||||| ||| ||||| ||||
Sbjct: 113 gccgctcctacccgctctaccgcttcgtgcgccaggaggtcggagccgtctacctcaccg 54
Query: 444 gcgagaagacgaggtcgcccggcgaggagctgaacaaggtgctcgtggccatc 496
||||||||||| | || |||||||||||||| |||||||||||||| ||||||
Sbjct: 53 gcgagaagacgcgctctcccggcgaggagctcaacaaggtgctcgttgccatc 1
>gb|CW257415.1|CW257415 104_722_11227323_116_35152_002 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11227323, DNA
sequence
Length = 618
Score = 141 bits (71), Expect = 1e-031
Identities = 89/95 (93%)
Strand = Plus / Plus
Query: 474 tgaacaaggtgctcgtggccatcaaccagcgcaagcacatcgacccgctgctcgagtgcc 533
|||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct: 34 tgaacaagatgctcgtggccatcaaccagcgcaagcacatcgacctactgctcgagtgtc 93
Query: 534 tcaaggagtggaacggcgagcccctgccgctctgc 568
||||||||||||||| |||||||||||| ||||||
Sbjct: 94 tcaaggagtggaacgacgagcccctgccactctgc 128
>gb|CW482624.1|CW482624 fsbb001f242n03f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f242n03, DNA
sequence
Length = 684
Score = 141 bits (71), Expect = 1e-031
Identities = 95/101 (94%), Gaps = 3/101 (2%)
Strand = Plus / Plus
Query: 7 gagaacgtgaaggccgcggtgaagaactn-gtgacgcaggtggccaagaagtccctgagc 65
|||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 584 gagaacgtgaaggccgcggtgaagaactgcgtgacgcaggtggccaagaagtcgctgagc 643
Query: 66 ctgaacgccagggg--cggctccacaacgcgcgcttctgcg 104
|||||||||||||| ||||||||||||||||||||||||
Sbjct: 644 ctgaacgccagggggcgggctccacaacgcgcgcttctgcg 684
>gb|AW677701.1|AW677701 WS1_10_H08.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 571
Score = 141 bits (71), Expect = 1e-031
Identities = 164/195 (84%)
Strand = Plus / Minus
Query: 367 caacaggatcaaggagtgccggtcctacccgctgtaccggttcgtgcgcgaggaggtcgg 426
||||||||||||||| ||||||| |||||||||||||| ||| | ||| |||| ||||
Sbjct: 233 caacaggatcaaggacagccggtcgtacccgctgtaccgcttcatccgccaggacctcgg 174
Query: 427 caccgagtacctgaccggcgagaagacgaggtcgcccggcgaggagctgaacaaggtgct 486
| ||| ||||||||||||||||||| | ||| |||||||||||| ||||||||| |
Sbjct: 173 cgccgtgtacctgaccggcgagaagctcaagtcccccggcgaggagtgcaacaaggtgtt 114
Query: 487 cgtggccatcaaccagcgcaagcacatcgacccgctgctcgagtgcctcaaggagtggaa 546
| |||| ||| | || |||||| ||||||||| ||||||||||||||||||||||| |
Sbjct: 113 cctggcgctcagcgagggcaagctcatcgaccccatgctcgagtgcctcaaggagtggga 54
Query: 547 cggcgagcccctgcc 561
|||| ||||||||||
Sbjct: 53 cggcaagcccctgcc 39
Score = 44.1 bits (22), Expect = 0.021
Identities = 53/62 (85%), Gaps = 1/62 (1%)
Strand = Plus / Minus
Query: 83 ctccacaacgcgcgcttctgcgagaaggacctgcagacggcgatcngaccgcgaggcggt 142
||||||| |||||||||| ||||||||| ||||| || || ||| ||||||||||| ||
Sbjct: 514 ctccacagcgcgcgcttcagcgagaaggccctgctcaccgccatc-gaccgcgaggccgt 456
Query: 143 gt 144
||
Sbjct: 455 gt 454
>gb|BE359207.1|BE359207 DG1_39_C05.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 393
Score = 141 bits (71), Expect = 1e-031
Identities = 164/195 (84%)
Strand = Plus / Plus
Query: 367 caacaggatcaaggagtgccggtcctacccgctgtaccggttcgtgcgcgaggaggtcgg 426
||||||||||||||| ||||||| |||||||||||||| ||| | ||| |||| ||||
Sbjct: 127 caacaggatcaaggacagccggtcgtacccgctgtaccgcttcatccgccaggacctcgg 186
Query: 427 caccgagtacctgaccggcgagaagacgaggtcgcccggcgaggagctgaacaaggtgct 486
| ||| ||||||||||||||||||| | ||| |||||||||||| ||||||||| |
Sbjct: 187 cgccgtgtacctgaccggcgagaagctcaagtcccccggcgaggagtgcaacaaggtgtt 246
Query: 487 cgtggccatcaaccagcgcaagcacatcgacccgctgctcgagtgcctcaaggagtggaa 546
| |||| ||| | || |||||| ||||||||| ||||||||||||||||||||||| |
Sbjct: 247 cctggcgctcagcgagggcaagctcatcgaccccatgctcgagtgcctcaaggagtggga 306
Query: 547 cggcgagcccctgcc 561
|||| ||||||||||
Sbjct: 307 cggcaagcccctgcc 321
>gb|BE361256.1|BE361256 DG1_70_D10.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 343
Score = 141 bits (71), Expect = 1e-031
Identities = 164/195 (84%)
Strand = Plus / Plus
Query: 367 caacaggatcaaggagtgccggtcctacccgctgtaccggttcgtgcgcgaggaggtcgg 426
||||||||||||||| ||||||| |||||||||||||| ||| | ||| |||| ||||
Sbjct: 84 caacaggatcaaggacagccggtcgtacccgctgtaccgcttcatccgccaggacctcgg 143
Query: 427 caccgagtacctgaccggcgagaagacgaggtcgcccggcgaggagctgaacaaggtgct 486
| ||| ||||||||||||||||||| | ||| |||||||||||| ||||||||| |
Sbjct: 144 cgccgtgtacctgaccggcgagaagctcaagtcccccggcgaggagtgcaacaaggtgtt 203
Query: 487 cgtggccatcaaccagcgcaagcacatcgacccgctgctcgagtgcctcaaggagtggaa 546
| |||| ||| | || |||||| ||||||||| ||||||||||||||||||||||| |
Sbjct: 204 cctggcgctcagcgagggcaagctcatcgaccccatgctcgagtgcctcaaggagtggga 263
Query: 547 cggcgagcccctgcc 561
|||| ||||||||||
Sbjct: 264 cggcaagcccctgcc 278
>gb|BE366341.1|BE366341 PI1_32_D08.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 622
Score = 141 bits (71), Expect = 1e-031
Identities = 164/195 (84%)
Strand = Plus / Plus
Query: 367 caacaggatcaaggagtgccggtcctacccgctgtaccggttcgtgcgcgaggaggtcgg 426
||||||||||||||| ||||||| |||||||||||||| ||| | ||| |||| ||||
Sbjct: 132 caacaggatcaaggacagccggtcgtacccgctgtaccgcttcatccgccaggacctcgg 191
Query: 427 caccgagtacctgaccggcgagaagacgaggtcgcccggcgaggagctgaacaaggtgct 486
| ||| ||||||||||||||||||| | ||| |||||||||||| ||||||||| |
Sbjct: 192 cgccgtgtacctgaccggcgagaagctcaagtcccccggcgaggagtgcaacaaggtgtt 251
Query: 487 cgtggccatcaaccagcgcaagcacatcgacccgctgctcgagtgcctcaaggagtggaa 546
| |||| ||| | || |||||| ||||||||| ||||||||||||||||||||||| |
Sbjct: 252 cctggcgctcagcgagggcaagctcatcgaccccatgctcgagtgcctcaaggagtggga 311
Query: 547 cggcgagcccctgcc 561
|||| ||||||||||
Sbjct: 312 cggcaagcccctgcc 326
>gb|BG047581.1|BG047581 OV1_25_F09.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 577
Score = 141 bits (71), Expect = 1e-031
Identities = 164/195 (84%)
Strand = Plus / Plus
Query: 367 caacaggatcaaggagtgccggtcctacccgctgtaccggttcgtgcgcgaggaggtcgg 426
||||||||||||||| ||||||| |||||||||||||| ||| | ||| |||| ||||
Sbjct: 364 caacaggatcaaggacagccggtcgtacccgctgtaccgcttcatccgccaggacctcgg 423
Query: 427 caccgagtacctgaccggcgagaagacgaggtcgcccggcgaggagctgaacaaggtgct 486
| ||| ||||||||||||||||||| | ||| |||||||||||| ||||||||| |
Sbjct: 424 cgccgtgtacctgaccggcgagaagctcaagtcccccggcgaggagtgcaacaaggtgtt 483
Query: 487 cgtggccatcaaccagcgcaagcacatcgacccgctgctcgagtgcctcaaggagtggaa 546
| |||| ||| | || |||||| ||||||||| ||||||||||||||||||||||| |
Sbjct: 484 cctggcgctcagcgagggcaagctcatcgaccccatgctcgagtgcctcaaggagtggga 543
Query: 547 cggcgagcccctgcc 561
|||| ||||||||||
Sbjct: 544 cggcaagcccctgcc 558
Score = 44.1 bits (22), Expect = 0.021
Identities = 53/62 (85%), Gaps = 1/62 (1%)
Strand = Plus / Plus
Query: 83 ctccacaacgcgcgcttctgcgagaaggacctgcagacggcgatcngaccgcgaggcggt 142
||||||| |||||||||| ||||||||| ||||| || || ||| ||||||||||| ||
Sbjct: 83 ctccacagcgcgcgcttcagcgagaaggccctgctcaccgccatc-gaccgcgaggccgt 141
Query: 143 gt 144
||
Sbjct: 142 gt 143
>gb|BG047939.1|BG047939 OV1_25_F09.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 679
Score = 141 bits (71), Expect = 1e-031
Identities = 164/195 (84%)
Strand = Plus / Plus
Query: 367 caacaggatcaaggagtgccggtcctacccgctgtaccggttcgtgcgcgaggaggtcgg 426
||||||||||||||| ||||||| |||||||||||||| ||| | ||| |||| ||||
Sbjct: 158 caacaggatcaaggacagccggtcgtacccgctgtaccgcttcatccgccaggacctcgg 217
Query: 427 caccgagtacctgaccggcgagaagacgaggtcgcccggcgaggagctgaacaaggtgct 486
| ||| ||||||||||||||||||| | ||| |||||||||||| ||||||||| |
Sbjct: 218 cgccgtgtacctgaccggcgagaagctcaagtcccccggcgaggagtgcaacaaggtgtt 277
Query: 487 cgtggccatcaaccagcgcaagcacatcgacccgctgctcgagtgcctcaaggagtggaa 546
| |||| ||| | || |||||| ||||||||| ||||||||||||||||||||||| |
Sbjct: 278 cctggcgctcagcgagggcaagctcatcgaccccatgctcgagtgcctcaaggagtggga 337
Query: 547 cggcgagcccctgcc 561
|||| ||||||||||
Sbjct: 338 cggcaagcccctgcc 352
>gb|BG102506.1|BG102506 RHIZ2_33_H09.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 606
Score = 141 bits (71), Expect = 1e-031
Identities = 164/195 (84%)
Strand = Plus / Plus
Query: 367 caacaggatcaaggagtgccggtcctacccgctgtaccggttcgtgcgcgaggaggtcgg 426
||||||||||||||| ||||||| |||||||||||||| ||| | ||| |||| ||||
Sbjct: 268 caacaggatcaaggacagccggtcgtacccgctgtaccgcttcatccgccaggacctcgg 327
Query: 427 caccgagtacctgaccggcgagaagacgaggtcgcccggcgaggagctgaacaaggtgct 486
| ||| ||||||||||||||||||| | ||| |||||||||||| ||||||||| |
Sbjct: 328 cgccgtgtacctgaccggcgagaagctcaagtcccccggcgaggagtgcaacaaggtgtt 387
Query: 487 cgtggccatcaaccagcgcaagcacatcgacccgctgctcgagtgcctcaaggagtggaa 546
| |||| |||| || |||||| ||||||||| ||||||||||||||||||||||| |
Sbjct: 388 cctggcgatcagtgagggcaagctcatcgaccccatgctcgagtgcctcaaggagtggga 447
Query: 547 cggcgagcccctgcc 561
|||| ||||||||||
Sbjct: 448 cggcaagcccctgcc 462
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 254,565
Number of Sequences: 832831
Number of extensions: 254565
Number of successful extensions: 74009
Number of sequences better than 0.5: 150
Number of HSP's better than 0.5 without gapping: 149
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 73528
Number of HSP's gapped (non-prelim): 411
length of query: 844
length of database: 491,359,669
effective HSP length: 20
effective length of query: 824
effective length of database: 474,703,049
effective search space: 391155312376
effective search space used: 391155312376
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)