BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3665525.2.1
(620 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BM317408.1|BM317408 LG1_261_H08.g9_A002 Light Grown 1 (L... 565 e-159
gb|AW286139.2|AW286139 LG1_261_H08.b1_A002 Light Grown 1 (L... 507 e-142
gb|BF656938.1|BF656938 OV2_22_H05.g1_A002 Ovary 2 (OV2) Sor... 414 e-114
gb|CW132946.1|CW132946 104_516_11116489_148_34802_007 Sorgh... 246 2e-063
gb|CW150519.1|CW150519 104_551_11143453_116_36307_063 Sorgh... 246 2e-063
gb|CW333022.1|CW333022 104_830_11481721_148_36039_001 Sorgh... 246 2e-063
gb|BZ336865.1|BZ336865 hz39f11.b1 WGS-SbicolorF (JM107 adap... 220 1e-055
gb|CW477861.1|CW477861 fsbb001f235g16f0 Sorghum methylation... 220 1e-055
gb|CW477862.1|CW477862 fsbb001f235g16k0 Sorghum methylation... 220 1e-055
gb|CW150520.1|CW150520 104_551_11143453_148_36308_063 Sorgh... 216 2e-054
gb|BZ336866.1|BZ336866 hz39f11.g1 WGS-SbicolorF (JM107 adap... 155 6e-036
gb|CW228767.1|CW228767 104_668_11206561_148_37248_001 Sorgh... 143 2e-032
gb|CW333021.1|CW333021 104_830_11481721_116_36040_001 Sorgh... 72 7e-011
gb|CW145824.1|CW145824 104_538_11138669_116_34978_023 Sorgh... 44 0.015
gb|CW413562.1|CW413562 fsbb001f112m11f0 Sorghum methylation... 42 0.060
gb|CW275088.1|CW275088 104_748_11404775_148_35382_092 Sorgh... 40 0.24
>gb|BM317408.1|BM317408 LG1_261_H08.g9_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 662
Score = 565 bits (285), Expect = e-159
Identities = 374/401 (93%), Gaps = 2/401 (0%)
Strand = Plus / Minus
Query: 121 atgaatcaaacgaatactccaaacgcatctactgagtgaggg-cggaggtcaactatcgg 179
|||||||||| ||||||||||||| ||||||||| ||||||| | |||||||||||| |
Sbjct: 400 atgaatcaaatgaatactccaaacacatctactgggtgaggggcagaggtcaactatgag 341
Query: 180 atccgttagtttgtgttccaaccgagaaatcatcagtcctcggactcggacacctcggct 239
|||||| |||||||| ||||||| ||||| ||||| ||||| |||||||||||||| |||
Sbjct: 340 atccgt-agtttgtgctccaaccaagaaaacatcaatcctcagactcggacacctcagct 282
Query: 240 gcaacggttggaccacctgtgcattcttttctttgatgaagctctagcatttttacctct 299
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 281 gcaacagttggaccacctgtgcactcttttctttgatgaagctctagcatttttacctct 222
Query: 300 gggtggcatagccctgagcattttggaatgtcccaaacagcaactgaagactccgtgcag 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 221 gggtggcatagccctgagcattttggaatgtcccaaacagcaactgaagactccgtgcag 162
Query: 360 tcaggttcacagagcgcatgtgtgttctcatggttgacgttcatagcaagcatccacgat 419
|||| |||||| || ||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct: 161 tcagcttcacaaagtgcatgtgtgttctcatggttgacgttcatggcaagcatccaagat 102
Query: 420 ccaattgtaacgtcctagatactaaacatacggaaactgttgttcctcaaagcaaccaag 479
||||||||||| |||| | | ||||||||||||||||||||||| |||||||||||||||
Sbjct: 101 ccaattgtaacatcctcgttgctaaacatacggaaactgttgtttctcaaagcaaccaag 42
Query: 480 ctagccaccacgtcagctgataaagcataaattggcccata 520
|||||||||||||||||||||| ||||||||||||||||||
Sbjct: 41 ctagccaccacgtcagctgatagagcataaattggcccata 1
>gb|AW286139.2|AW286139 LG1_261_H08.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 452
Score = 507 bits (256), Expect = e-142
Identities = 298/312 (95%)
Strand = Plus / Minus
Query: 309 agccctgagcattttggaatgtcccaaacagcaactgaagactccgtgcagtcaggttca 368
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 452 agccctgagcattttggaatgtcccaaacagcaactgaagactccgtgcagtcagcttca 393
Query: 369 cagagcgcatgtgtgttctcatggttgacgttcatagcaagcatccacgatccaattgta 428
|| || ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 392 caaagtgcatgtgtgttctcatggttgacgttcatggcaagcatccaagatccaattgta 333
Query: 429 acgtcctagatactaaacatacggaaactgttgttcctcaaagcaaccaagctagccacc 488
|| |||| | | ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 332 acatcctcgttgctaaacatacggaaactgttgtttctcaaagcaaccaagctagccacc 273
Query: 489 acgtcagctgataaagcataaattggcccatatgcatgaagaaagtattctgatccgagt 548
||||||||||||| |||||||||||||||||| |||||||| |||||||| |||||||||
Sbjct: 272 acgtcagctgatagagcataaattggcccatacgcatgaaggaagtattccgatccgagt 213
Query: 549 aagaaggattggggctcataccatttcaacttaggatcagtaaaaacaggccccttcttc 608
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 aagaaggattggggctcataccatttcaacttaggatcagtaaaaacaggccccttcttc 153
Query: 609 atgcatccaatg 620
||||||||||||
Sbjct: 152 atgcatccaatg 141
>gb|BF656938.1|BF656938 OV2_22_H05.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 547
Score = 414 bits (209), Expect = e-114
Identities = 280/301 (93%), Gaps = 2/301 (0%)
Strand = Plus / Minus
Query: 121 atgaatcaaacgaatactccaaacgcatctactgagtgaggg-cggaggtcaactatcgg 179
|||||||||| ||||||||||||| ||||||||| ||||||| | |||||||||||| |
Sbjct: 300 atgaatcaaatgaatactccaaacacatctactgggtgaggggcagaggtcaactatgag 241
Query: 180 atccgttagtttgtgttccaaccgagaaatcatcagtcctcggactcggacacctcggct 239
|||||| |||||||| ||||||| ||||| ||||| ||||| |||||||||||||| |||
Sbjct: 240 atccgt-agtttgtgctccaaccaagaaaacatcaatcctcagactcggacacctcagct 182
Query: 240 gcaacggttggaccacctgtgcattcttttctttgatgaagctctagcatttttacctct 299
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 181 gcaacagttggaccacctgtgcactcttttctttgatgaagctctagcatttttacctct 122
Query: 300 gggtggcatagccctgagcattttggaatgtcccaaacagcaactgaagactccgtgcag 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gggtggcatagccctgagcattttggaatgtcccaaacagcaactgaagactccgtgcag 62
Query: 360 tcaggttcacagagcgcatgtgtgttctcatggttgacgttcatagcaagcatccacgat 419
|||| |||||| || ||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct: 61 tcagcttcacaaagtgcatgtgtgttctcatggttgacgttcatggcaagcatccaagat 2
Query: 420 c 420
|
Sbjct: 1 c 1
>gb|CW132946.1|CW132946 104_516_11116489_148_34802_007 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11116489, DNA
sequence
Length = 736
Score = 246 bits (124), Expect = 2e-063
Identities = 180/196 (91%), Gaps = 2/196 (1%)
Strand = Plus / Minus
Query: 121 atgaatcaaacgaatactccaaacgcatctactgagtgaggg-cggaggtcaactatcgg 179
|||||||||| ||||||||||||| ||||||||| ||||||| | |||||||||||| |
Sbjct: 480 atgaatcaaatgaatactccaaacacatctactgggtgaggggcagaggtcaactatgag 421
Query: 180 atccgttagtttgtgttccaaccgagaaatcatcagtcctcggactcggacacctcggct 239
|||||| |||||||| ||||||| ||||| ||||| ||||| |||||||||||||| |||
Sbjct: 420 atccgt-agtttgtgctccaaccaagaaaacatcaatcctcagactcggacacctcagct 362
Query: 240 gcaacggttggaccacctgtgcattcttttctttgatgaagctctagcatttttacctct 299
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 361 gcaacagttggaccacctgtgcactcttttctttgatgaagctctagcatttttacctct 302
Query: 300 gggtggcatagccctg 315
||||||||||||||||
Sbjct: 301 gggtggcatagccctg 286
>gb|CW150519.1|CW150519 104_551_11143453_116_36307_063 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11143453, DNA
sequence
Length = 625
Score = 246 bits (124), Expect = 2e-063
Identities = 180/196 (91%), Gaps = 2/196 (1%)
Strand = Plus / Plus
Query: 121 atgaatcaaacgaatactccaaacgcatctactgagtgaggg-cggaggtcaactatcgg 179
|||||||||| ||||||||||||| ||||||||| ||||||| | |||||||||||| |
Sbjct: 125 atgaatcaaatgaatactccaaacacatctactgggtgaggggcagaggtcaactatgag 184
Query: 180 atccgttagtttgtgttccaaccgagaaatcatcagtcctcggactcggacacctcggct 239
|||||| |||||||| ||||||| ||||| ||||| ||||| |||||||||||||| |||
Sbjct: 185 atccgt-agtttgtgctccaaccaagaaaacatcaatcctcagactcggacacctcagct 243
Query: 240 gcaacggttggaccacctgtgcattcttttctttgatgaagctctagcatttttacctct 299
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 244 gcaacagttggaccacctgtgcactcttttctttgatgaagctctagcatttttacctct 303
Query: 300 gggtggcatagccctg 315
||||||||||||||||
Sbjct: 304 gggtggcatagccctg 319
>gb|CW333022.1|CW333022 104_830_11481721_148_36039_001 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11481721, DNA
sequence
Length = 726
Score = 246 bits (124), Expect = 2e-063
Identities = 180/196 (91%), Gaps = 2/196 (1%)
Strand = Plus / Minus
Query: 121 atgaatcaaacgaatactccaaacgcatctactgagtgaggg-cggaggtcaactatcgg 179
|||||||||| ||||||||||||| ||||||||| ||||||| | |||||||||||| |
Sbjct: 288 atgaatcaaatgaatactccaaacacatctactgggtgaggggcagaggtcaactatgag 229
Query: 180 atccgttagtttgtgttccaaccgagaaatcatcagtcctcggactcggacacctcggct 239
|||||| |||||||| ||||||| ||||| ||||| ||||| |||||||||||||| |||
Sbjct: 228 atccgt-agtttgtgctccaaccaagaaaacatcaatcctcagactcggacacctcagct 170
Query: 240 gcaacggttggaccacctgtgcattcttttctttgatgaagctctagcatttttacctct 299
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 169 gcaacagttggaccacctgtgcactcttttctttgatgaagctctagcatttttacctct 110
Query: 300 gggtggcatagccctg 315
||||||||||||||||
Sbjct: 109 gggtggcatagccctg 94
>gb|BZ336865.1|BZ336865 hz39f11.b1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone hz39f11 5', DNA sequence
Length = 716
Score = 220 bits (111), Expect = 1e-055
Identities = 138/147 (93%)
Strand = Plus / Plus
Query: 312 cctgagcattttggaatgtcccaaacagcaactgaagactccgtgcagtcaggttcacag 371
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 469 cctgagcattttggaatgtcccaaacagcaactgaagactccgtgcagtcagcttcacaa 528
Query: 372 agcgcatgtgtgttctcatggttgacgttcatagcaagcatccacgatccaattgtaacg 431
|| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct: 529 agtgcatgtgtgttctcatggttgacgttcatggcaagcatccaagatccaattgtaaca 588
Query: 432 tcctagatactaaacatacggaaactg 458
|||| | | ||||||||||||||||||
Sbjct: 589 tcctcgttgctaaacatacggaaactg 615
Score = 137 bits (69), Expect = 1e-030
Identities = 88/93 (94%), Gaps = 1/93 (1%)
Strand = Plus / Plus
Query: 223 actcggacacctcggctgcaacggttggaccacctgtgcattcttttctttgatgaagct 282
|||||||| |||| ||||| || ||||||||||||||||| |||||||||||||||||||
Sbjct: 1 actcggac-cctcagctgccacagttggaccacctgtgcactcttttctttgatgaagct 59
Query: 283 ctagcatttttacctctgggtggcatagccctg 315
|||||||||||||||||||||||||||||||||
Sbjct: 60 ctagcatttttacctctgggtggcatagccctg 92
>gb|CW477861.1|CW477861 fsbb001f235g16f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f235g16, DNA
sequence
Length = 752
Score = 220 bits (111), Expect = 1e-055
Identities = 138/147 (93%)
Strand = Plus / Minus
Query: 312 cctgagcattttggaatgtcccaaacagcaactgaagactccgtgcagtcaggttcacag 371
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 656 cctgagcattttggaatgtcccaaacagcaactgaagactccgtgcagtcagcttcacaa 597
Query: 372 agcgcatgtgtgttctcatggttgacgttcatagcaagcatccacgatccaattgtaacg 431
|| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct: 596 agtgcatgtgtgttctcatggttgacgttcatggcaagcatccaagatccaattgtaaca 537
Query: 432 tcctagatactaaacatacggaaactg 458
|||| | | ||||||||||||||||||
Sbjct: 536 tcctcgttgctaaacatacggaaactg 510
>gb|CW477862.1|CW477862 fsbb001f235g16k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f235g16, DNA
sequence
Length = 751
Score = 220 bits (111), Expect = 1e-055
Identities = 138/147 (93%)
Strand = Plus / Plus
Query: 312 cctgagcattttggaatgtcccaaacagcaactgaagactccgtgcagtcaggttcacag 371
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 183 cctgagcattttggaatgtcccaaacagcaactgaagactccgtgcagtcagcttcacaa 242
Query: 372 agcgcatgtgtgttctcatggttgacgttcatagcaagcatccacgatccaattgtaacg 431
|| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct: 243 agtgcatgtgtgttctcatggttgacgttcatggcaagcatccaagatccaattgtaaca 302
Query: 432 tcctagatactaaacatacggaaactg 458
|||| | | ||||||||||||||||||
Sbjct: 303 tcctcgttgctaaacatacggaaactg 329
>gb|CW150520.1|CW150520 104_551_11143453_148_36308_063 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11143453, DNA
sequence
Length = 557
Score = 216 bits (109), Expect = 2e-054
Identities = 139/149 (93%)
Strand = Plus / Minus
Query: 310 gccctgagcattttggaatgtcccaaacagcaactgaagactccgtgcagtcaggttcac 369
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct: 433 gccctgagcattttggaatgtcccaaacagcaattgaagactccgtgcagtcagcttcac 374
Query: 370 agagcgcatgtgtgttctcatggttgacgttcatagcaagcatccacgatccaattgtaa 429
| || ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct: 373 aaagtgcatgtgtgttctcatggttgacgttcatggcaagcatccaagatccaattgtaa 314
Query: 430 cgtcctagatactaaacatacggaaactg 458
| |||| | | ||||||||||||||||||
Sbjct: 313 catcctcgttgctaaacatacggaaactg 285
>gb|BZ336866.1|BZ336866 hz39f11.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone hz39f11 5', DNA sequence
Length = 627
Score = 155 bits (78), Expect = 6e-036
Identities = 105/114 (92%)
Strand = Plus / Minus
Query: 345 gaagactccgtgcagtcaggttcacagagcgcatgtgtgttctcatggttgacgttcata 404
||||||||||||||||||| |||||| || |||||||||||||||||||||||||||||
Sbjct: 627 gaagactccgtgcagtcagcttcacaaagtgcatgtgtgttctcatggttgacgttcatg 568
Query: 405 gcaagcatccacgatccaattgtaacgtcctagatactaaacatacggaaactg 458
||||||||||| |||||||||||||| |||| | | ||||||||||||||||||
Sbjct: 567 gcaagcatccaagatccaattgtaacatcctcgttgctaaacatacggaaactg 514
>gb|CW228767.1|CW228767 104_668_11206561_148_37248_001 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11206561, DNA
sequence
Length = 291
Score = 143 bits (72), Expect = 2e-032
Identities = 125/140 (89%), Gaps = 2/140 (1%)
Strand = Plus / Minus
Query: 121 atgaatcaaacgaatactccaaacgcatctactgagtgaggg-cggaggtcaactatcgg 179
|||||||||| ||||||||||||| ||||||||| ||||||| | |||||||||||| |
Sbjct: 139 atgaatcaaatgaatactccaaacacatctactgggtgaggggcagaggtcaactatgag 80
Query: 180 atccgttagtttgtgttccaaccgagaaatcatcagtcctcggactcggacacctcggct 239
|||||| |||||||| ||||||| ||||| ||||| ||||| |||||||||||||| |||
Sbjct: 79 atccgt-agtttgtgctccaaccaagaaaacatcaatcctcagactcggacacctcagct 21
Query: 240 gcaacggttggaccacctgt 259
||||| ||||||||||||||
Sbjct: 20 gcaacagttggaccacctgt 1
>gb|CW333021.1|CW333021 104_830_11481721_116_36040_001 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11481721, DNA
sequence
Length = 711
Score = 71.9 bits (36), Expect = 7e-011
Identities = 71/80 (88%), Gaps = 2/80 (2%)
Strand = Plus / Plus
Query: 121 atgaatcaaacgaatactccaaacgcatctactgagtga-gggcggaggtcaactatcgg 179
|||||||||| ||||||||||||| ||||||||| |||| |||| |||||||||||| |
Sbjct: 633 atgaatcaaatgaatactccaaacacatctactgggtgaggggcagaggtcaactatgag 692
Query: 180 atccgttagtttgtgttcca 199
||||| ||||||||| ||||
Sbjct: 693 atccg-tagtttgtgctcca 711
>gb|CW145824.1|CW145824 104_538_11138669_116_34978_023 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11138669, DNA
sequence
Length = 709
Score = 44.1 bits (22), Expect = 0.015
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 121 atgaatcaaacgaatactccaaacgcatct 150
|||||||||| ||||||||||||| |||||
Sbjct: 30 atgaatcaaatgaatactccaaacacatct 1
>gb|CW413562.1|CW413562 fsbb001f112m11f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f112m11, DNA
sequence
Length = 680
Score = 42.1 bits (21), Expect = 0.060
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 287 catttttacctctgggtggca 307
|||||||||||||||||||||
Sbjct: 386 catttttacctctgggtggca 366
>gb|CW275088.1|CW275088 104_748_11404775_148_35382_092 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11404775, DNA
sequence
Length = 481
Score = 40.1 bits (20), Expect = 0.24
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 575 caacttaggatcagtaaaaa 594
||||||||||||||||||||
Sbjct: 81 caacttaggatcagtaaaaa 62
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 146,488
Number of Sequences: 832831
Number of extensions: 146488
Number of successful extensions: 38676
Number of sequences better than 0.5: 16
Number of HSP's better than 0.5 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 38630
Number of HSP's gapped (non-prelim): 33
length of query: 620
length of database: 491,359,669
effective HSP length: 19
effective length of query: 601
effective length of database: 475,535,880
effective search space: 285797063880
effective search space used: 285797063880
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)