BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3665460.2.1
(649 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CD424558.1|CD424558 SA1_6_C12.g1_A002 Salicylic acid-tre... 555 e-156
gb|CD464043.1|CD464043 ETH1_48_G09.b1_A002 Ethylene-treated... 555 e-156
gb|CW329487.1|CW329487 104_826_11479871_116_35995_096 Sorgh... 547 e-154
gb|CN126440.1|CN126440 RHOH1_17_D12.b1_A002 Acid- and alkal... 533 e-150
gb|CD424461.1|CD424461 SA1_6_C12.b1_A002 Salicylic acid-tre... 482 e-134
gb|CN137605.1|CN137605 OX1_58_H05.b1_A002 Oxidatively-stres... 476 e-132
gb|CD462684.1|CD462684 ETH1_39_D04.b1_A002 Ethylene-treated... 432 e-119
gb|AW282498.1|AW282498 LG1_312_H11.g1_A002 Light Grown 1 (L... 416 e-114
gb|CN127635.1|CN127635 RHOH1_24_D09.b1_A002 Acid- and alkal... 412 e-113
gb|CW329488.1|CW329488 104_826_11479871_148_35996_096 Sorgh... 396 e-108
gb|CF429936.1|CF429936 PH1_25_A06.b1_A002 Phosphorous-defic... 347 8e-094
gb|BF656030.1|BF656030 FM1_43_B04.g1_A003 Floral-Induced Me... 321 5e-086
gb|CD232252.1|CD232252 SS1_39_D06.b1_A012 Salt-stressed see... 293 1e-077
gb|CL191252.1|CL191252 104_410_10906666_114_32533_045 Sorgh... 210 1e-052
gb|CW361212.1|CW361212 fsbb001f029k10k0 Sorghum methylation... 159 4e-037
gb|CW361211.1|CW361211 fsbb001f029k10f0 Sorghum methylation... 137 1e-030
gb|CD219815.1|CD219815 CCC1_59_E06.b1_A007 Callus culture/c... 129 3e-028
gb|CN130868.1|CN130868 RHOH1_44_H02.b1_A002 Acid- and alkal... 115 5e-024
gb|CW063943.1|CW063943 104_309_10522288_114_30136 Sorghum m... 101 8e-020
gb|CW337923.1|CW337923 104_838_11484471_116_36126_064 Sorgh... 101 8e-020
gb|CW337924.1|CW337924 104_838_11484471_148_36127_064 Sorgh... 101 8e-020
gb|AW679312.1|AW679312 WS1_23_D08.g1_A002 Water-stressed 1 ... 101 8e-020
gb|AW922540.1|AW922540 DG1_20_D08.g1_A002 Dark Grown 1 (DG1... 101 8e-020
gb|BE357975.1|BE357975 DG1_23_H01.g1_A002 Dark Grown 1 (DG1... 101 8e-020
gb|BE358170.1|BE358170 DG1_24_B06.g1_A002 Dark Grown 1 (DG1... 101 8e-020
gb|BE358464.1|BE358464 DG1_29_B03.g1_A002 Dark Grown 1 (DG1... 101 8e-020
gb|BE358854.1|BE358854 DG1_32_D09.g1_A002 Dark Grown 1 (DG1... 101 8e-020
gb|BE359627.1|BE359627 DG1_54_C02.g2_A002 Dark Grown 1 (DG1... 101 8e-020
gb|BE359916.1|BE359916 DG1_58_D02.g2_A002 Dark Grown 1 (DG1... 101 8e-020
gb|BE360023.1|BE360023 DG1_60_D11.g2_A002 Dark Grown 1 (DG1... 101 8e-020
gb|BE360131.1|BE360131 DG1_61_C06.g1_A002 Dark Grown 1 (DG1... 101 8e-020
gb|BE360177.1|BE360177 DG1_61_C06.g2_A002 Dark Grown 1 (DG1... 101 8e-020
gb|BE362457.1|BE362457 DG1_86_F01.g1_A002 Dark Grown 1 (DG1... 101 8e-020
gb|BG102547.1|BG102547 RHIZ2_34_D08.g1_A003 Rhizome2 (RHIZ2... 101 8e-020
gb|BG323022.1|BG323022 EM1_14_A04.g1_A002 Embryo 1 (EM1) So... 101 8e-020
gb|CB928030.1|CB928030 ABA1_36_D01.b1_A012 Abscisic acid-tr... 101 8e-020
gb|CD206011.1|CD206011 HS1_20_G11.b1_A012 Heat-shocked seed... 101 8e-020
gb|CD206826.1|CD206826 HS1_25_E08.b1_A012 Heat-shocked seed... 101 8e-020
gb|CD208770.1|CD208770 HS1_44_F11.b1_A012 Heat-shocked seed... 101 8e-020
gb|CD221002.1|CD221002 CCC1_73_D05.b1_A007 Callus culture/c... 101 8e-020
gb|CD221984.1|CD221984 CCC1_1_H04.b1_A007 Callus culture/ce... 101 8e-020
gb|CD222306.1|CD222306 CCC1_21_A12.b1_A007 Callus culture/c... 101 8e-020
gb|CD222617.1|CD222617 CCC1_23_C12.b1_A007 Callus culture/c... 101 8e-020
gb|CD223152.1|CD223152 CCC1_26_B11.b1_A007 Callus culture/c... 101 8e-020
gb|CD223588.1|CD223588 CCC1_29_B11.b1_A007 Callus culture/c... 101 8e-020
gb|CD224280.1|CD224280 CCC1_33_B12.b1_A007 Callus culture/c... 101 8e-020
gb|CD225385.1|CD225385 CCC1_3_E05.b1_A007 Callus culture/ce... 101 8e-020
gb|CD226206.1|CD226206 CCC1_44_F01.b1_A007 Callus culture/c... 101 8e-020
gb|CD227866.1|CD227866 CCC1_56_E07.b1_A007 Callus culture/c... 101 8e-020
gb|CD228019.1|CD228019 CCC1_5_G06.b1_A007 Callus culture/ce... 101 8e-020
gb|CD228325.1|CD228325 CCC1_7_E03.b1_A007 Callus culture/ce... 101 8e-020
gb|CD228496.1|CD228496 CCC1_8_G05.b1_A007 Callus culture/ce... 101 8e-020
gb|CD228966.1|CD228966 CCC1_11_F06.b1_A007 Callus culture/c... 101 8e-020
gb|CD229249.1|CD229249 CCC1_14_A06.b1_A007 Callus culture/c... 101 8e-020
gb|CN126812.1|CN126812 RHOH1_19_G02.b1_A002 Acid- and alkal... 101 8e-020
gb|CX613427.1|CX613427 GABR1_8_C12.b1_A002 GA- or brassinol... 101 8e-020
gb|CX615471.1|CX615471 GABR1_20_G10.b1_A002 GA- or brassino... 94 2e-017
gb|CL162166.1|CL162166 104_354_10806217_114_31830_121 Sorgh... 84 2e-014
gb|BG557108.1|BG557108 EM1_42_G03.g1_A002 Embryo 1 (EM1) So... 80 3e-013
gb|CD225388.1|CD225388 CCC1_3_E02.b1_A007 Callus culture/ce... 78 1e-012
gb|CW321511.1|CW321511 104_814_11475594_148_35939_065 Sorgh... 66 4e-009
gb|BE359241.1|BE359241 DG1_39_H04.g1_A002 Dark Grown 1 (DG1... 66 4e-009
gb|CN127716.1|CN127716 RHOH1_24_D09.g3_A002 Acid- and alkal... 66 4e-009
gb|CW491052.1|CW491052 fsbb001f280m01k0 Sorghum methylation... 64 2e-008
gb|CW481051.1|CW481051 fsbb001f240g19f0 Sorghum methylation... 62 7e-008
gb|CW172683.1|CW172683 104_584_11156422_148_36543_095 Sorgh... 60 3e-007
gb|CW200655.1|CW200655 104_626_11184164_148_36867_076 Sorgh... 58 1e-006
gb|BE358889.1|BE358889 DG1_32_E11.g1_A002 Dark Grown 1 (DG1... 56 4e-006
gb|CF073350.1|CF073350 FE1_22_G08.g1_A002 Iron-deficient se... 56 4e-006
gb|CB929194.1|CB929194 ABA1_40_G04.b1_A012 Abscisic acid-tr... 48 0.001
gb|CL178773.1|CL178773 104_387_10894824_148_31905_120 Sorgh... 42 0.063
gb|CW187737.1|CW187737 104_607_11172637_148_36722_059 Sorgh... 42 0.063
gb|CW023037.1|CW023037 104_162_10432203_1_30008 Sorghum met... 40 0.25
gb|CW067191.1|CW067191 104_314_10524115_114_30126 Sorghum m... 40 0.25
gb|CW072075.1|CW072075 104_325_10592061_114_30535 Sorghum m... 40 0.25
gb|CW072076.1|CW072076 104_325_10592061_116_30539 Sorghum m... 40 0.25
gb|CW133244.1|CW133244 104_516_11116655_148_34802_082 Sorgh... 40 0.25
gb|CW141560.1|CW141560 104_532_11136375_148_34930_056 Sorgh... 40 0.25
gb|CW151693.1|CW151693 104_552_11144079_116_36315_054 Sorgh... 40 0.25
gb|CW151694.1|CW151694 104_552_11144079_148_36316_054 Sorgh... 40 0.25
gb|CW300694.1|CW300694 104_784_11463805_148_36254_059 Sorgh... 40 0.25
gb|CW300963.1|CW300963 104_784_11463953_148_36254_069 Sorgh... 40 0.25
gb|CW371298.1|CW371298 fsbb001f046l04f0 Sorghum methylation... 40 0.25
gb|CW449776.1|CW449776 fsbb001f188b09f0 Sorghum methylation... 40 0.25
gb|CW449777.1|CW449777 fsbb001f188b09k0 Sorghum methylation... 40 0.25
gb|CW474163.1|CW474163 fsbb001f229n23f0 Sorghum methylation... 40 0.25
gb|AW680162.1|AW680162 WS1_4_A06.g1_A002 Water-stressed 1 (... 40 0.25
gb|AW925072.1|AW925072 WS1_75_A12.b1_A002 Water-stressed 1 ... 40 0.25
gb|BE593740.1|BE593740 WS1_101_F03.g1_A002 Water-stressed 1... 40 0.25
gb|BE594054.1|BE594054 WS1_101_F03.b1_A002 Water-stressed 1... 40 0.25
gb|BG102846.1|BG102846 RHIZ2_34_B06.b1_A003 Rhizome2 (RHIZ2... 40 0.25
gb|BG103299.1|BG103299 RHIZ2_18_D01.b1_A003 Rhizome2 (RHIZ2... 40 0.25
gb|BG240371.1|BG240371 OV1_29_B11.b1_A002 Ovary 1 (OV1) Sor... 40 0.25
gb|BG412745.1|BG412745 OV2_34_C08.b1_A002 Ovary 2 (OV2) Sor... 40 0.25
gb|BG560241.1|BG560241 RHIZ2_71_G10.b1_A003 Rhizome2 (RHIZ2... 40 0.25
gb|BG560300.1|BG560300 RHIZ2_72_E10.b1_A003 Rhizome2 (RHIZ2... 40 0.25
gb|BG560445.1|BG560445 RHIZ2_74_D11.b1_A003 Rhizome2 (RHIZ2... 40 0.25
gb|BG649447.1|BG649447 EM1_79_E07.b1_A002 Embryo 1 (EM1) So... 40 0.25
gb|BG933487.1|BG933487 WS1_4_A06.b1_A002 Water-stressed 1 (... 40 0.25
gb|BM324841.1|BM324841 PIC1_36_D10.b1_A002 Pathogen-infecte... 40 0.25
gb|BM326357.1|BM326357 PIC1_56_B02.b1_A002 Pathogen-infecte... 40 0.25
gb|CB925232.1|CB925232 ABA1_20_C02.g1_A012 Abscisic acid-tr... 40 0.25
gb|CD207788.1|CD207788 HS1_34_H12.g1_A012 Heat-shocked seed... 40 0.25
gb|CD220477.1|CD220477 CCC1_67_H08.g1_A007 Callus culture/c... 40 0.25
gb|CD232586.1|CD232586 SS1_46_C02.g1_A012 Salt-stressed see... 40 0.25
gb|CD463751.1|CD463751 ETH1_46_E05.g1_A002 Ethylene-treated... 40 0.25
gb|CF480884.1|CF480884 POL1_68_D04.g1_A002 Pollen Sorghum b... 40 0.25
gb|CF489962.1|CF489962 POL1_61_D10.g1_A002 Pollen Sorghum b... 40 0.25
gb|CN123952.1|CN123952 RHOH1_1_E11.g1_A002 Acid- and alkali... 40 0.25
gb|CN124601.1|CN124601 RHOH1_5_G03.g1_A002 Acid- and alkali... 40 0.25
gb|CN130205.1|CN130205 RHOH1_40_A07.b1_A002 Acid- and alkal... 40 0.25
gb|CN130279.1|CN130279 RHOH1_40_A07.g1_A002 Acid- and alkal... 40 0.25
gb|CN134191.1|CN134191 OX1_20_G06.g1_A002 Oxidatively-stres... 40 0.25
gb|CN134936.1|CN134936 OX1_29_B09.g1_A002 Oxidatively-stres... 40 0.25
gb|CN143345.1|CN143345 WOUND1_15_E01.g1_A002 Wounded leaves... 40 0.25
gb|CX612746.1|CX612746 GABR1_4_F02.b1_A002 GA- or brassinol... 40 0.25
gb|CX612835.1|CX612835 GABR1_4_F02.g1_A002 GA- or brassinol... 40 0.25
>gb|CD424558.1|CD424558 SA1_6_C12.g1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_6_C12_A002 5', mRNA sequence
Length = 718
Score = 555 bits (280), Expect = e-156
Identities = 419/465 (90%), Gaps = 3/465 (0%)
Strand = Plus / Plus
Query: 1 gctcaacgatctgatcctgctcaacagcggcatctcctcctgcatcccgcccgagatcgg 60
||||||||| ||||| || |||||||||||||||||||||||||||||||| ||||||||
Sbjct: 189 gctcaacgacctgattctcctcaacagcggcatctcctcctgcatcccgcctgagatcgg 248
Query: 61 caagctggccaagctcnccgtgctggacctcagcttcaccagcatcgccggcaccctgcc 120
|||||||| ||||||| ||||||| |||||||| |||| || |||||||||||| |||||
Sbjct: 249 caagctggacaagctcaccgtgctcgacctcagtttcaacaacatcgccggcacgctgcc 308
Query: 121 ggacacgatcggcaacatgcgggcgctggagcagctcgacgtcgcgcacaaccgcctcgc 180
||| || |||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct: 309 ggatacaatcggcaacatgcgcgcgctggagcagctcgacgtcgcgcacaaccggctcgc 368
Query: 181 cggcgagataccggagagcgtctgcggcctgccgcacctcaagaacttcacctactcgta 240
|||||||||||| |||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct: 369 cggcgagataccagagagcatctgcgagctgccgcacctcaagaacttcacctactcgta 428
Query: 241 caacttcttctgcggcgagccgcaccggtgcctcgaggtgccgcgcgtcgacgaccgcca 300
|||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| ||
Sbjct: 429 caacttcttctgcggcgagccgcatcggtgcctcgaggtgccgcgcatcgacgaccggca 488
Query: 301 gaactgcatcgccgggcgccccgaccagcgcccgggcgaggagtgcatctcgttcctgca 360
||||||||| || ||||||||||||||||| || ||||||||||||||||| ||||| ||
Sbjct: 489 gaactgcattgctgggcgccccgaccagcggccaggcgaggagtgcatctcattcctaca 548
Query: 361 ccagccgagggtgcgctgcgacgcccacgggtgcatcgcgccac---cgtcttcgccacc 417
||| || |||| | |||||||| ||| |||||||||||||||| || | |||| ||
Sbjct: 549 ccaaccacgggttcactgcgacggccatgggtgcatcgcgccaccatcgccgccgccgcc 608
Query: 418 tccacctccacctatgcatgctcctccgccgcctgtatactgatc 462
||||||||||| ||||||||||||| |||||||||||||||||
Sbjct: 609 accacctccaccagtgcatgctcctcctccgcctgtatactgatc 653
Score = 42.1 bits (21), Expect = 0.063
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 521 aagggtaaatgcatacacatg 541
|||||||||||||||||||||
Sbjct: 698 aagggtaaatgcatacacatg 718
>gb|CD464043.1|CD464043 ETH1_48_G09.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_48_G09_A002 3', mRNA sequence
Length = 691
Score = 555 bits (280), Expect = e-156
Identities = 419/465 (90%), Gaps = 3/465 (0%)
Strand = Plus / Plus
Query: 1 gctcaacgatctgatcctgctcaacagcggcatctcctcctgcatcccgcccgagatcgg 60
||||||||| ||||| || |||||||||||||||||||||||||||||||| ||||||||
Sbjct: 74 gctcaacgagctgattctcctcaacagcggcatctcctcctgcatcccgcctgagatcgg 133
Query: 61 caagctggccaagctcnccgtgctggacctcagcttcaccagcatcgccggcaccctgcc 120
|||||||| ||||||| ||||||| |||||||| |||| || |||||||||||| |||||
Sbjct: 134 caagctggacaagctcaccgtgctcgacctcagtttcaacaacatcgccggcacgctgcc 193
Query: 121 ggacacgatcggcaacatgcgggcgctggagcagctcgacgtcgcgcacaaccgcctcgc 180
||| || |||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct: 194 ggatacaatcggcaacatgcgcgcgctggagcagctcgacgtcgcgcacaaccggctcgc 253
Query: 181 cggcgagataccggagagcgtctgcggcctgccgcacctcaagaacttcacctactcgta 240
|||||||||||| |||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct: 254 cggcgagataccagagagcatctgcgagctgccgcacctcaagaacttcacctactcgta 313
Query: 241 caacttcttctgcggcgagccgcaccggtgcctcgaggtgccgcgcgtcgacgaccgcca 300
|||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| ||
Sbjct: 314 caacttcttctgcggcgagccgcatcggtgcctcgaggtgccgcgcatcgacgaccggca 373
Query: 301 gaactgcatcgccgggcgccccgaccagcgcccgggcgaggagtgcatctcgttcctgca 360
||||||||| || ||||||||||||||||| || ||||||||||||||||| ||||| ||
Sbjct: 374 gaactgcattgctgggcgccccgaccagcggccaggcgaggagtgcatctcattcctaca 433
Query: 361 ccagccgagggtgcgctgcgacgcccacgggtgcatcgcgccac---cgtcttcgccacc 417
||| || |||| | |||||||| ||| |||||||||||||||| || | |||| ||
Sbjct: 434 ccaaccacgggttcactgcgacggccatgggtgcatcgcgccaccatcgccgccgccgcc 493
Query: 418 tccacctccacctatgcatgctcctccgccgcctgtatactgatc 462
||||||||||| ||||||||||||| |||||||||||||||||
Sbjct: 494 accacctccaccagtgcatgctcctcctccgcctgtatactgatc 538
Score = 131 bits (66), Expect = 9e-029
Identities = 75/78 (96%)
Strand = Plus / Plus
Query: 521 aagggtaaatgcatacacatggtatatactgtaacttttatttctcagcaaaagattaat 580
|||||||||||||||||||||||||||||||||| |||||||||||| ||||||| ||||
Sbjct: 583 aagggtaaatgcatacacatggtatatactgtaatttttatttctcaacaaaagagtaat 642
Query: 581 aatggattcatagatttt 598
||||||||||||||||||
Sbjct: 643 aatggattcatagatttt 660
>gb|CW329487.1|CW329487 104_826_11479871_116_35995_096 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11479871, DNA
sequence
Length = 703
Score = 547 bits (276), Expect = e-154
Identities = 418/465 (89%), Gaps = 3/465 (0%)
Strand = Plus / Plus
Query: 1 gctcaacgatctgatcctgctcaacagcggcatctcctcctgcatcccgcccgagatcgg 60
||||||||| ||||| || |||||||||||||||||||||||||||||||| ||||||||
Sbjct: 207 gctcaacgagctgattctcctcaacagcggcatctcctcctgcatcccgcctgagatcgg 266
Query: 61 caagctggccaagctcnccgtgctggacctcagcttcaccagcatcgccggcaccctgcc 120
|||||||| ||||||| ||||||| |||||||| |||| || |||||||||||| |||||
Sbjct: 267 caagctggacaagctcaccgtgctcgacctcagtttcaacaacatcgccggcacgctgcc 326
Query: 121 ggacacgatcggcaacatgcgggcgctggagcagctcgacgtcgcgcacaaccgcctcgc 180
||| || |||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct: 327 ggatacaatcggcaacatgcgcgcgctggagcagctcgacgtcgcgcacaaccggctcgc 386
Query: 181 cggcgagataccggagagcgtctgcggcctgccgcacctcaagaacttcacctactcgta 240
|||||||||||| |||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct: 387 cggcgagataccagagagcatctgcgagctgccgcacctcaagaacttcacctactcgta 446
Query: 241 caacttcttctgcggcgagccgcaccggtgcctcgaggtgccgcgcgtcgacgaccgcca 300
|||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| ||
Sbjct: 447 caacttcttctgcggcgagccgcatcggtgcctcgaggtgccgcgcatcgacgaccggca 506
Query: 301 gaactgcatcgccgggcgccccgaccagcgcccgggcgaggagtgcatctcgttcctgca 360
||||||||| || ||||||||||||||||| || ||||||||||||||||| ||||| ||
Sbjct: 507 gaactgcattgctgggcgccccgaccagcggccaggcgaggagtgcatctcattcctaca 566
Query: 361 ccagccgagggtgcgctgcgacgcccacgggtgcatcgcgccac---cgtcttcgccacc 417
||| || |||| | |||||||| ||| |||||||||||||||| || | |||| ||
Sbjct: 567 ccaaccacgggttcactgcgacggccatgggtgcatcgcgccaccatcgccgccgccgcc 626
Query: 418 tccacctccacctatgcatgctcctccgccgcctgtatactgatc 462
||||||||||| ||||||||||||| ||||||||||||||||
Sbjct: 627 accacctccaccagtgcatgctcctccctcgcctgtatactgatc 671
>gb|CN126440.1|CN126440 RHOH1_17_D12.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_17_D12_A002 3', mRNA sequence
Length = 588
Score = 533 bits (269), Expect = e-150
Identities = 402/446 (90%), Gaps = 3/446 (0%)
Strand = Plus / Plus
Query: 20 ctcaacagcggcatctcctcctgcatcccgcccgagatcggcaagctggccaagctcncc 79
|||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| ||
Sbjct: 2 ctcaacagcggcatctcctcctgcatcccgcctgagatcggcaagctggacaagctcacc 61
Query: 80 gtgctggacctcagcttcaccagcatcgccggcaccctgccggacacgatcggcaacatg 139
||||| |||||||| |||| || |||||||||||| |||||||| || ||||||||||||
Sbjct: 62 gtgctcgacctcagtttcaacaacatcgccggcacgctgccggatacaatcggcaacatg 121
Query: 140 cgggcgctggagcagctcgacgtcgcgcacaaccgcctcgccggcgagataccggagagc 199
|| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct: 122 cgcgcgctggagcagctcgacgtcgcgcacaaccggctcgccggcgagataccagagagc 181
Query: 200 gtctgcggcctgccgcacctcaagaacttcacctactcgtacaacttcttctgcggcgag 259
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 atctgcgagctgccgcacctcaagaacttcacctactcgtacaacttcttctgcggcgag 241
Query: 260 ccgcaccggtgcctcgaggtgccgcgcgtcgacgaccgccagaactgcatcgccgggcgc 319
||||| ||||||||||||||||||||| |||||||||| ||||||||||| || ||||||
Sbjct: 242 ccgcatcggtgcctcgaggtgccgcgcatcgacgaccggcagaactgcattgctgggcgc 301
Query: 320 cccgaccagcgcccgggcgaggagtgcatctcgttcctgcaccagccgagggtgcgctgc 379
||||||||||| || ||||||||||||||||| ||||| ||||| || |||| | |||
Sbjct: 302 cccgaccagcggccaggcgaggagtgcatctcattcctacaccaaccacgggttcattgc 361
Query: 380 gacgcccacgggtgcatcgcgccacc---gtcttcgccacctccacctccacctatgcat 436
|||| ||| ||||||||||||||||| | | |||| || ||||||||||| |||||
Sbjct: 362 gacggccatgggtgcatcgcgccaccatggccgccgccgccaccacctccaccagtgcat 421
Query: 437 gctcctccgccgcctgtatactgatc 462
|||||||| |||||||||||||||||
Sbjct: 422 gctcctcctccgcctgtatactgatc 447
Score = 137 bits (69), Expect = 1e-030
Identities = 88/93 (94%), Gaps = 1/93 (1%)
Strand = Plus / Plus
Query: 521 aagggtaaatgcatacacatggtatatactgtaacttttatttctcagcaaaagattaat 580
|||||||||||||||||||||||||||||||||| |||||||||||| ||||||| ||||
Sbjct: 492 aagggtaaatgcatacacatggtatatactgtaatttttatttctcaacaaaagagtaat 551
Query: 581 aatggattcatagatttttcatcacggaatgct 613
|||||||||||||| ||||||| ||||||||||
Sbjct: 552 aatggattcataga-ttttcattacggaatgct 583
>gb|CD424461.1|CD424461 SA1_6_C12.b1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_6_C12_A002 3', mRNA sequence
Length = 580
Score = 482 bits (243), Expect = e-134
Identities = 382/428 (89%), Gaps = 3/428 (0%)
Strand = Plus / Plus
Query: 38 tcctgcatcccgcccgagatcggcaagctggccaagctcnccgtgctggacctcagcttc 97
|||||||||||||| |||||||||||||||| ||||||| ||||||| |||||||| |||
Sbjct: 1 tcctgcatcccgcctgagatcggcaagctggacaagctcaccgtgctcgacctcagtttc 60
Query: 98 accagcatcgccggcaccctgccggacacgatcggcaacatgcgggcgctggagcagctc 157
| || |||||||||||| |||||||| || |||||||||||||| ||||||||||||||
Sbjct: 61 aacaacatcgccggcacgctgccggatacaatcggcaacatgcgcgcgctggagcagctt 120
Query: 158 gacgtcgcgcacaaccgcctcgccggcgagataccggagagcgtctgcggcctgccgcac 217
||||||||||||||||| ||||||||||||||||| |||||| |||||| |||||||||
Sbjct: 121 gacgtcgcgcacaaccggctcgccggcgagataccagagagcatctgcgagctgccgcac 180
Query: 218 ctcaagaacttcacctactcgtacaacttcttctgcggcgagccgcaccggtgcctcgag 277
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct: 181 ctcaagaacttcacctactcgtacaacttcttttgcggcgagccgcatcggtgcctcgag 240
Query: 278 gtgccgcgcgtcgacgaccgccagaactgcatcgccgggcgccccgaccagcgcccgggc 337
||||||||| |||||||||| ||||||||||| || ||||||||||||||||| || |||
Sbjct: 241 gtgccgcgcatcgacgaccggcagaactgcattgctgggcgccccgaccagcggccaggc 300
Query: 338 gaggagtgcatctcgttcctgcaccagccgagggtgcgctgcgacgcccacgggtgcatc 397
||||||||||| || ||||| ||||| || |||| | |||||||| ||| |||||||||
Sbjct: 301 gaggagtgcatttcattcctacaccaaccacgggttcactgcgacggccatgggtgcatc 360
Query: 398 gcgccacc---gtcttcgccacctccacctccacctatgcatgctcctccgccgcctgta 454
|||||||| | | |||| || ||||||||||| ||||||||||||| |||||||||
Sbjct: 361 gcgccaccattgccgccgccgccaccacctccaccagtgcatgctcctcctccgcctgta 420
Query: 455 tactgatc 462
||||||||
Sbjct: 421 tactgatc 428
Score = 137 bits (69), Expect = 1e-030
Identities = 88/93 (94%), Gaps = 1/93 (1%)
Strand = Plus / Plus
Query: 521 aagggtaaatgcatacacatggtatatactgtaacttttatttctcagcaaaagattaat 580
|||||||||||||||||||||||||||||||||| |||||||||||| ||||||| ||||
Sbjct: 473 aagggtaaatgcatacacatggtatatactgtaatttttatttctcaacaaaagagtaat 532
Query: 581 aatggattcatagatttttcatcacggaatgct 613
|||||||||||||| ||||||| ||||||||||
Sbjct: 533 aatggattcataga-ttttcattacggaatgct 564
>gb|CN137605.1|CN137605 OX1_58_H05.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_58_H05_A002 3', mRNA sequence
Length = 634
Score = 476 bits (240), Expect = e-132
Identities = 409/465 (87%), Gaps = 3/465 (0%)
Strand = Plus / Plus
Query: 1 gctcaacgatctgatcctgctcaacagcggcatctcctcctgcatcccgcccgagatcgg 60
||||||||| ||||| || |||||||| ||||||||||||||||||||||| ||||||||
Sbjct: 49 gctcaacgagctgattctcctcaacaggggcatctcctcctgcatcccgcctgagatcgg 108
Query: 61 caagctggccaagctcnccgtgctggacctcagcttcaccagcatcgccggcaccctgcc 120
|||| ||| ||||||| ||||||| |||||||| |||| || |||||||||||| |||||
Sbjct: 109 caagttggacaagctcaccgtgctcgacctcagtttcaacaacatcgccggcacgctgcc 168
Query: 121 ggacacgatcggcaacatgcgggcgctggagcagctcgacgtcgcgcacaaccgcctcgc 180
||| || || ||||||||||| |||||||||||||||||||| ||||||||||| |||||
Sbjct: 169 ggatacaattggcaacatgcgcgcgctggagcagctcgacgttgcgcacaaccggctcgc 228
Query: 181 cggcgagataccggagagcgtctgcggcctgccgcacctcaagaacttcacctactcgta 240
|||||| ||||| |||||| | |||| |||||||||||||||||||||||||| | |||
Sbjct: 229 cggcgatataccagagagcatttgcgagctgccgcacctcaagaacttcacctattggta 288
Query: 241 caacttcttctgcggcgagccgcaccggtgcctcgaggtgccgcgcgtcgacgaccgcca 300
|||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| ||
Sbjct: 289 caacttcttctgcggcgagccgcatcggtgcctcgaggtgccgcgcatcgacgaccggca 348
Query: 301 gaactgcatcgccgggcgccccgaccagcgcccgggcgaggagtgcatctcgttcctgca 360
||| ||||| || ||||||||||||||||| || ||||||||||||||||| ||||| ||
Sbjct: 349 gaattgcattgctgggcgccccgaccagcggccaggcgaggagtgcatctcattcctaca 408
Query: 361 ccagccgagggtgcgctgcgacgcccacgggtgcatcgcgccacc---gtcttcgccacc 417
||| || |||| | ||||||| ||| ||||||||||||||||| | | |||| ||
Sbjct: 409 ccaaccacgggttcattgcgacggccatgggtgcatcgcgccaccatagccgccgccgcc 468
Query: 418 tccacctccacctatgcatgctcctccgccgcctgtatactgatc 462
||||||||||| ||||||||||||| |||||||||||||||||
Sbjct: 469 accacctccaccagtgcatgctcctcctccgcctgtatactgatc 513
Score = 129 bits (65), Expect = 3e-028
Identities = 74/77 (96%)
Strand = Plus / Plus
Query: 521 aagggtaaatgcatacacatggtatatactgtaacttttatttctcagcaaaagattaat 580
|||||||||||||||||||||||||||||||||| |||||||||||| ||||||| ||||
Sbjct: 558 aagggtaaatgcatacacatggtatatactgtaatttttatttctcaacaaaagagtaat 617
Query: 581 aatggattcatagattt 597
|||||||||||||||||
Sbjct: 618 aatggattcatagattt 634
>gb|CD462684.1|CD462684 ETH1_39_D04.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_39_D04_A002 3', mRNA sequence
Length = 448
Score = 432 bits (218), Expect = e-119
Identities = 337/376 (89%), Gaps = 3/376 (0%)
Strand = Plus / Plus
Query: 90 tcagcttcaccagcatcgccggcaccctgccggacacgatcggcaacatgcgggcgctgg 149
|||| |||| || |||||||||||| |||||||| || |||||||||||||| |||||||
Sbjct: 1 tcagtttcaacaacatcgccggcacgctgccggatacaatcggcaacatgcgcgcgctgg 60
Query: 150 agcagctcgacgtcgcgcacaaccgcctcgccggcgagataccggagagcgtctgcggcc 209
||||||||||||||||||||||||| ||||||||||||||||| |||||| |||||| |
Sbjct: 61 agcagctcgacgtcgcgcacaaccggctcgccggcgagataccagagagcatctgcgagc 120
Query: 210 tgccgcacctcaagaacttcacctactcgtacaacttcttctgcggcgagccgcaccggt 269
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 121 tgccgcacctcaagaacttcacctactcgtacaacttcttctgcggcgagccgcatcggt 180
Query: 270 gcctcgaggtgccgcgcgtcgacgaccgccagaactgcatcgccgggcgccccgaccagc 329
||||||||||||||||| |||||||||| ||||||||||| || ||||||||||||||||
Sbjct: 181 gcctcgaggtgccgcgcatcgacgaccggcagaactgcattgctgggcgccccgaccagc 240
Query: 330 gcccgggcgaggagtgcatctcgttcctgcaccagccgagggtgcgctgcgacgcccacg 389
| || ||||||||||||||||| ||||| ||||| || |||| | |||||||| ||| |
Sbjct: 241 ggccaggcgaggagtgcatctcattcctacaccaaccacgggttcactgcgacggccatg 300
Query: 390 ggtgcatcgcgccac---cgtcttcgccacctccacctccacctatgcatgctcctccgc 446
||||||||||||||| || | |||| || ||||||||||| ||||||||||||| |
Sbjct: 301 ggtgcatcgcgccaccatcgccgccgccgccaccacctccaccagtgcatgctcctcctc 360
Query: 447 cgcctgtatactgatc 462
||||||||||||||||
Sbjct: 361 cgcctgtatactgatc 376
Score = 56.0 bits (28), Expect = 4e-006
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 521 aagggtaaatgcatacacatggtatata 548
||||||||||||||||||||||||||||
Sbjct: 421 aagggtaaatgcatacacatggtatata 448
>gb|AW282498.1|AW282498 LG1_312_H11.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 480
Score = 416 bits (210), Expect = e-114
Identities = 320/356 (89%), Gaps = 3/356 (0%)
Strand = Plus / Plus
Query: 110 ggcaccctgccggacacgatcggcaacatgcgggcgctggagcagctcgacgtcgcgcac 169
||||| |||||||| || |||||||||||||| |||||||||||||||||||||||||||
Sbjct: 1 ggcacgctgccggatacaatcggcaacatgcgcgcgctggagcagctcgacgtcgcgcac 60
Query: 170 aaccgcctcgccggcgagataccggagagcgtctgcggcctgccgcacctcaagaacttc 229
||||| ||||||||||||||||| |||||| |||||| |||||||||||||||||||||
Sbjct: 61 aaccggctcgccggcgagataccagagagcatctgcgagctgccgcacctcaagaacttc 120
Query: 230 acctactcgtacaacttcttctgcggcgagccgcaccggtgcctcgaggtgccgcgcgtc 289
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct: 121 acctactcgtacaacttcttctgcggcgagccgcatcggtgcctcgaggtgccgcgcatc 180
Query: 290 gacgaccgccagaactgcatcgccgggcgccccgaccagcgcccgggcgaggagtgcatc 349
|||||||| ||||||||||| || ||||||||||||||||| || |||||||||||||||
Sbjct: 181 gacgaccggcagaactgcattgctgggcgccccgaccagcggccaggcgaggagtgcatc 240
Query: 350 tcgttcctgcaccagccgagggtgcgctgcgacgcccacgggtgcatcgcgccac---cg 406
|| ||||| ||||| || |||| | |||||||| ||| |||||||||||||||| ||
Sbjct: 241 tcattcctacaccaaccacgggttcactgcgacggccatgggtgcatcgcgccaccatcg 300
Query: 407 tcttcgccacctccacctccacctatgcatgctcctccgccgcctgtatactgatc 462
| |||| || ||||||||||| ||||||||||||| |||||||||||||||||
Sbjct: 301 ccgccgccgccaccacctccaccagtgcatgctcctcctccgcctgtatactgatc 356
Score = 131 bits (66), Expect = 9e-029
Identities = 75/78 (96%)
Strand = Plus / Plus
Query: 521 aagggtaaatgcatacacatggtatatactgtaacttttatttctcagcaaaagattaat 580
|||||||||||||||||||||||||||||||||| |||||||||||| ||||||| ||||
Sbjct: 401 aagggtaaatgcatacacatggtatatactgtaatttttatttctcaacaaaagagtaat 460
Query: 581 aatggattcatagatttt 598
||||||||||||||||||
Sbjct: 461 aatggattcatagatttt 478
>gb|CN127635.1|CN127635 RHOH1_24_D09.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_24_D09_A002 3', mRNA sequence
Length = 746
Score = 412 bits (208), Expect = e-113
Identities = 315/350 (90%), Gaps = 3/350 (0%)
Strand = Plus / Plus
Query: 116 ctgccggacacgatcggcaacatgcgggcgctggagcagctcgacgtcgcgcacaaccgc 175
|||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 177 ctgccggatacaatcggcaacatgcgcgcgctggagcagctcgacgtcgcgcacaaccgg 236
Query: 176 ctcgccggcgagataccggagagcgtctgcggcctgccgcacctcaagaacttcacctac 235
||||||||||||||||| |||||| |||||| |||||||||||||||||||||||||||
Sbjct: 237 ctcgccggcgagataccagagagcatctgcgagctgccgcacctcaagaacttcacctac 296
Query: 236 tcgtacaacttcttctgcggcgagccgcaccggtgcctcgaggtgccgcgcgtcgacgac 295
||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct: 297 tcgtacaacttcttctgcggcgagccgcatcggtgcctcgaggtgccgcgcatcgacgac 356
Query: 296 cgccagaactgcatcgccgggcgccccgaccagcgcccgggcgaggagtgcatctcgttc 355
|| ||||||||||| || ||||||||||||||||| || ||||||||||||||||| |||
Sbjct: 357 cggcagaactgcattgctgggcgccccgaccagcggccaggcgaggagtgcatctcattc 416
Query: 356 ctgcaccagccgagggtgcgctgcgacgcccacgggtgcatcgcgccac---cgtcttcg 412
|| ||||| || |||| | |||||||| ||| |||||||||||||||| || | ||
Sbjct: 417 ctacaccaaccacgggttcactgcgacggccatgggtgcatcgcgccaccatcgccgccg 476
Query: 413 ccacctccacctccacctatgcatgctcctccgccgcctgtatactgatc 462
|| || ||||||||||| ||||||||||||| |||||||||||||||||
Sbjct: 477 ccgccaccacctccaccagtgcatgctcctcctccgcctgtatactgatc 526
Score = 137 bits (69), Expect = 1e-030
Identities = 88/93 (94%), Gaps = 1/93 (1%)
Strand = Plus / Plus
Query: 521 aagggtaaatgcatacacatggtatatactgtaacttttatttctcagcaaaagattaat 580
|||||||||||||||||||||||||||||||||| |||||||||||| ||||||| ||||
Sbjct: 571 aagggtaaatgcatacacatggtatatactgtaatttttatttctcaacaaaagagtaat 630
Query: 581 aatggattcatagatttttcatcacggaatgct 613
|||||||||||||| ||||||| ||||||||||
Sbjct: 631 aatggattcataga-ttttcattacggaatgct 662
>gb|CW329488.1|CW329488 104_826_11479871_148_35996_096 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11479871, DNA
sequence
Length = 654
Score = 396 bits (200), Expect = e-108
Identities = 301/334 (90%), Gaps = 3/334 (0%)
Strand = Plus / Minus
Query: 132 gcaacatgcgggcgctggagcagctcgacgtcgcgcacaaccgcctcgccggcgagatac 191
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 654 gcaacatgcgcgcgctggagcagctcgacgtcgcgcacaaccggctcgccggcgagatac 595
Query: 192 cggagagcgtctgcggcctgccgcacctcaagaacttcacctactcgtacaacttcttct 251
| |||||| |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 cagagagcatctgcgagctgccgcacctcaagaacttcacctactcgtacaacttcttct 535
Query: 252 gcggcgagccgcaccggtgcctcgaggtgccgcgcgtcgacgaccgccagaactgcatcg 311
||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||| |
Sbjct: 534 gcggcgagccgcatcggtgcctcgaggtgccgcgcatcgacgaccggcagaactgcattg 475
Query: 312 ccgggcgccccgaccagcgcccgggcgaggagtgcatctcgttcctgcaccagccgaggg 371
| ||||||||||||||||| || ||||||||||||||||| ||||| ||||| || |||
Sbjct: 474 ctgggcgccccgaccagcggccaggcgaggagtgcatctcattcctacaccaaccacggg 415
Query: 372 tgcgctgcgacgcccacgggtgcatcgcgccac---cgtcttcgccacctccacctccac 428
| | |||||||| ||| |||||||||||||||| || | |||| || ||||||||||
Sbjct: 414 ttcactgcgacggccatgggtgcatcgcgccaccatcgccgccgccgccaccacctccac 355
Query: 429 ctatgcatgctcctccgccgcctgtatactgatc 462
| ||||||||||||| |||||||||||||||||
Sbjct: 354 cagtgcatgctcctcctccgcctgtatactgatc 321
Score = 137 bits (69), Expect = 1e-030
Identities = 88/93 (94%), Gaps = 1/93 (1%)
Strand = Plus / Minus
Query: 521 aagggtaaatgcatacacatggtatatactgtaacttttatttctcagcaaaagattaat 580
|||||||||||||||||||||||||||||||||| |||||||||||| ||||||| ||||
Sbjct: 276 aagggtaaatgcatacacatggtatatactgtaatttttatttctcaacaaaagagtaat 217
Query: 581 aatggattcatagatttttcatcacggaatgct 613
|||||||||||||| ||||||| ||||||||||
Sbjct: 216 aatggattcataga-ttttcattacggaatgct 185
>gb|CF429936.1|CF429936 PH1_25_A06.b1_A002 Phosphorous-deficient seedlings Sorghum bicolor
cDNA clone PH1_25_A06_A002 3', mRNA sequence
Length = 525
Score = 347 bits (175), Expect = 8e-094
Identities = 263/291 (90%), Gaps = 1/291 (0%)
Strand = Plus / Plus
Query: 116 ctgccggacacgatcggcaacatgcgggcgctggagcagctcgacgtcgcgcacaaccgc 175
|||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 4 ctgccggatacaatcggcaacatgcgcgcgctggagcagctcgacgtcgcgcacaaccgg 63
Query: 176 ct-cgccggcgagataccggagagcgtctgcggcctgccgcacctcaagaacttcaccta 234
|| ||||||||||||||| |||||| |||||| ||||||||||||||||||||||||||
Sbjct: 64 cttcgccggcgagataccagagagcatctgcgagctgccgcacctcaagaacttcaccta 123
Query: 235 ctcgtacaacttcttctgcggcgagccgcaccggtgcctcgaggtgccgcgcgtcgacga 294
||||||||||||||| |||||||||||||| ||||||||||||||||||||| |||||||
Sbjct: 124 ctcgtacaacttcttttgcggcgagccgcatcggtgcctcgaggtgccgcgcatcgacga 183
Query: 295 ccgccagaactgcatcgccgggcgccccgaccagcgcccgggcgaggagtgcatctcgtt 354
||| ||||||||||| || ||||||||||||||||| || ||||||||||||||||| ||
Sbjct: 184 ccggcagaactgcattgctgggcgccccgaccagcggccaggcgaggagtgcatctcatt 243
Query: 355 cctgcaccagccgagggtgcgctgcgacgcccacgggtgcatcgcgccacc 405
||| ||||| || |||| | || |||| ||| |||||||||||||||||
Sbjct: 244 cctacaccaaccacgggttcattgggacggccatgggtgcatcgcgccacc 294
Score = 137 bits (69), Expect = 1e-030
Identities = 88/93 (94%), Gaps = 1/93 (1%)
Strand = Plus / Plus
Query: 521 aagggtaaatgcatacacatggtatatactgtaacttttatttctcagcaaaagattaat 580
|||||||||||||||||||||||||||||||||| |||||||||||| ||||||| ||||
Sbjct: 400 aagggtaaatgcatacacatggtatatactgtaatttttatttctcaacaaaagagtaat 459
Query: 581 aatggattcatagatttttcatcacggaatgct 613
|||||||||||||| ||||||| ||||||||||
Sbjct: 460 aatggattcataga-ttttcattacggaatgct 491
Score = 56.0 bits (28), Expect = 4e-006
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 419 ccacctccacctatgcatgctcctccgccgcctgtatactgatc 462
|||| |||||| ||||||||||||| |||||||||||||||||
Sbjct: 312 ccacttccaccagtgcatgctcctcctccgcctgtatactgatc 355
>gb|BF656030.1|BF656030 FM1_43_B04.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 428
Score = 321 bits (162), Expect = 5e-086
Identities = 272/306 (88%), Gaps = 2/306 (0%)
Strand = Plus / Plus
Query: 158 gacgtcgcgcacaaccgcctcgccggcgagataccggagagcgtctgcggcctgccgcac 217
||||||||||||||| | ||||||||||||||||| |||||| |||||| |||||||||
Sbjct: 1 gacgtcgcgcacaacgggctcgccggcgagataccagagagcatctgcgagctgccgcac 60
Query: 218 ctcaagaacttcacctactcgtacaacttcttctgcggcgagccgcaccggtgcctcgag 277
||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct: 61 ctcaagaacttcacctactcgtacaactttctctgcggcgagccgcatcggtgcctcgag 120
Query: 278 gtgccgcgcgtcgacgaccgccaga-actgcatcgccgggcgccccgaccagcgcccggg 336
||||||||| ||| ||||| ||||| ||||||| || |||||||| |||||||| || ||
Sbjct: 121 gtgccgcgcatcgccgacc-ccagacactgcattgctgggcgccctgaccagcggccagg 179
Query: 337 cgaggagtgcatctcgttcctgcaccagccgagggtgcgctgcgacgcccacgggtgcat 396
||||||||||||||| ||||| ||||| || |||| | |||||||||||| ||||||||
Sbjct: 180 cgaggagtgcatctcattcctacaccaaccacgggttcactgcgacgcccatgggtgcat 239
Query: 397 cgcgccaccgtcttcgccacctccacctccacctatgcatgctcctccgccgcctgtata 456
||||||||| || |||| || ||||||||||| ||||||||||||| |||||||||||
Sbjct: 240 cgcgccaccatcgccgccgccaccacctccaccagtgcatgctcctcctccgcctgtata 299
Query: 457 ctgatc 462
||||||
Sbjct: 300 ctgatc 305
Score = 137 bits (69), Expect = 1e-030
Identities = 91/97 (93%), Gaps = 1/97 (1%)
Strand = Plus / Plus
Query: 502 cttgtggtgtcaaaatcgaaagggtaaatgcatacacatggtatatactgtaacttttat 561
|||||||||| ||||| ||| |||||||||||||||||||||||||||||||| ||||||
Sbjct: 332 cttgtggtgtgaaaattgaa-gggtaaatgcatacacatggtatatactgtaatttttat 390
Query: 562 ttctcagcaaaagattaataatggattcatagatttt 598
|||||| ||||||| ||||||||||||||||||||||
Sbjct: 391 ttctcaacaaaagagtaataatggattcatagatttt 427
>gb|CD232252.1|CD232252 SS1_39_D06.b1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_39_D06_A012 3', mRNA sequence
Length = 426
Score = 293 bits (148), Expect = 1e-077
Identities = 262/300 (87%)
Strand = Plus / Plus
Query: 163 cgcgcacaaccgcctcgccggcgagataccggagagcgtctgcggcctgccgcacctcaa 222
|||||||||||| |||||||| |||||||| |||||| | |||| ||||||||||||||
Sbjct: 1 cgcgcacaaccggctcgccggggagataccagagagcatttgcgagctgccgcacctcaa 60
Query: 223 gaacttcacctactcgtacaacttcttctgcggcgagccgcaccggtgcctcgaggtgcc 282
|||||||||||| | ||||||||| || |||||||||||||| |||||||||||||||||
Sbjct: 61 gaacttcacctattggtacaactttttttgcggcgagccgcatcggtgcctcgaggtgcc 120
Query: 283 gcgcgtcgacgaccgccagaactgcatcgccgggcgccccgaccagcgcccgggcgagga 342
|||| |||||||||| ||||||||||| | ||||||||||||||||| || || |||||
Sbjct: 121 gcgcatcgacgaccggcagaactgcattgttgggcgccccgaccagcggccaggggagga 180
Query: 343 gtgcatctcgttcctgcaccagccgagggtgcgctgcgacgcccacgggtgcatcgcgcc 402
|||||| || ||||| ||||| || |||| | |||||||||||| ||||||||||||||
Sbjct: 181 gtgcatttcattcctacaccaaccacgggttcactgcgacgcccatgggtgcatcgcgcc 240
Query: 403 accgtcttcgccacctccacctccacctatgcatgctcctccgccgcctgtatactgatc 462
||| | |||| || ||||||||||| ||||||||||||| |||||||||||||||||
Sbjct: 241 accattgccgccgccaccacctccaccagtgcatgctcctcctccgcctgtatactgatc 300
Score = 121 bits (61), Expect = 8e-026
Identities = 90/97 (92%), Gaps = 2/97 (2%)
Strand = Plus / Plus
Query: 502 cttgtggtgtcaaaatcgaaagggtaaatgcatacacatggtatatactgtaacttttat 561
|||||||||| ||||| ||| |||||||||||||||||||||||||||||||| |||| |
Sbjct: 327 cttgtggtgtgaaaattgaa-gggtaaatgcatacacatggtatatactgtaa-tttttt 384
Query: 562 ttctcagcaaaagattaataatggattcatagatttt 598
|||||| ||||||| ||||||||||||||||||||||
Sbjct: 385 ttctcaacaaaagagtaataatggattcatagatttt 421
>gb|CL191252.1|CL191252 104_410_10906666_114_32533_045 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10906666, DNA
sequence
Length = 562
Score = 210 bits (106), Expect = 1e-052
Identities = 147/161 (91%)
Strand = Plus / Minus
Query: 1 gctcaacgatctgatcctgctcaacagcggcatctcctcctgcatcccgcccgagatcgg 60
||||||||| ||||| || |||||||||||||||||||||||||||||||| ||||||||
Sbjct: 161 gctcaacgagctgattctcctcaacagcggcatctcctcctgcatcccgcctgagatcgg 102
Query: 61 caagctggccaagctcnccgtgctggacctcagcttcaccagcatcgccggcaccctgcc 120
|||||||| ||||||| ||||||| |||||||| |||| || |||||||||||| |||||
Sbjct: 101 caagctggacaagctcaccgtgctcgacctcagtttcaacaacatcgccggcacgctgcc 42
Query: 121 ggacacgatcggcaacatgcgggcgctggagcagctcgacg 161
||| || |||||||||||||| |||||||||||||||||||
Sbjct: 41 ggatacaatcggcaacatgcgcgcgctggagcagctcgacg 1
>gb|CW361212.1|CW361212 fsbb001f029k10k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f029k10, DNA
sequence
Length = 706
Score = 159 bits (80), Expect = 4e-037
Identities = 112/123 (91%)
Strand = Plus / Plus
Query: 1 gctcaacgatctgatcctgctcaacagcggcatctcctcctgcatcccgcccgagatcgg 60
||||||||| ||||| || |||||||||||||||||||||||||||||||| ||||||||
Sbjct: 576 gctcaacgagctgattctcctcaacagcggcatctcctcctgcatcccgcctgagatcgg 635
Query: 61 caagctggccaagctcnccgtgctggacctcagcttcaccagcatcgccggcaccctgcc 120
|||||||| ||||||| ||||||| |||||||| |||| || |||||||||||| |||||
Sbjct: 636 caagctggacaagctcaccgtgctcgacctcagtttcaacaacatcgccggcacgctgcc 695
Query: 121 gga 123
|||
Sbjct: 696 gga 698
>gb|CW361211.1|CW361211 fsbb001f029k10f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f029k10, DNA
sequence
Length = 764
Score = 137 bits (69), Expect = 1e-030
Identities = 88/93 (94%), Gaps = 1/93 (1%)
Strand = Plus / Minus
Query: 521 aagggtaaatgcatacacatggtatatactgtaacttttatttctcagcaaaagattaat 580
|||||||||||||||||||||||||||||||||| |||||||||||| ||||||| ||||
Sbjct: 578 aagggtaaatgcatacacatggtatatactgtaatttttatttctcaacaaaagagtaat 519
Query: 581 aatggattcatagatttttcatcacggaatgct 613
|||||||||||||| ||||||| ||||||||||
Sbjct: 518 aatggattcataga-ttttcattacggaatgct 487
Score = 103 bits (52), Expect = 2e-020
Identities = 120/142 (84%), Gaps = 3/142 (2%)
Strand = Plus / Minus
Query: 324 accagcgcccgggcgaggagtgcatctcgttcctgcaccagccgagggtgcgctgcgacg 383
||||||| || ||||||||||||||||| ||||| ||||| || |||| | ||||||||
Sbjct: 764 accagcggccaggcgaggagtgcatctcattcctacaccaaccacgggttcactgcgacg 705
Query: 384 cccacgggtgcatcgcgccac---cgtcttcgccacctccacctccacctatgcatgctc 440
||| |||||||||||||||| || | |||| || ||||||||||| |||||||||
Sbjct: 704 gccatgggtgcatcgcgccaccatcgccgccgccgccaccacctccaccagtgcatgctc 645
Query: 441 ctccgccgcctgtatactgatc 462
|||| |||||||||||||||||
Sbjct: 644 ctcctccgcctgtatactgatc 623
>gb|CD219815.1|CD219815 CCC1_59_E06.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_59_E06_A007 3', mRNA sequence
Length = 262
Score = 129 bits (65), Expect = 3e-028
Identities = 74/77 (96%)
Strand = Plus / Plus
Query: 521 aagggtaaatgcatacacatggtatatactgtaacttttatttctcagcaaaagattaat 580
|||||||||||||||||||||||||||||||||| |||||||||||| ||||||| ||||
Sbjct: 185 aagggtaaatgcatacacatggtatatactgtaatttttatttctcaacaaaagagtaat 244
Query: 581 aatggattcatagattt 597
|||||||||||||||||
Sbjct: 245 aatggattcatagattt 261
Score = 99.6 bits (50), Expect = 3e-019
Identities = 118/140 (84%), Gaps = 3/140 (2%)
Strand = Plus / Plus
Query: 326 cagcgcccgggcgaggagtgcatctcgttcctgcaccagccgagggtgcgctgcgacgcc 385
||||| || ||||||||||||||||| ||||| ||||| || |||| | |||||||| |
Sbjct: 1 cagcggccaggcgaggagtgcatctcattcctacaccatccacgggttcactgcgacggc 60
Query: 386 cacgggtgcatcgcgccacc---gtcttcgccacctccacctccacctatgcatgctcct 442
|| ||||||||||||||||| | | |||| || ||||||||||| |||||||||||
Sbjct: 61 catgggtgcatcgcgccaccattgccgccgccgccaccacctccaccagtgcatgctcct 120
Query: 443 ccgccgcctgtatactgatc 462
|| |||||||||||||||||
Sbjct: 121 cctccgcctgtatactgatc 140
>gb|CN130868.1|CN130868 RHOH1_44_H02.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_44_H02_A002 3', mRNA sequence
Length = 165
Score = 115 bits (58), Expect = 5e-024
Identities = 67/70 (95%)
Strand = Plus / Plus
Query: 521 aagggtaaatgcatacacatggtatatactgtaacttttatttctcagcaaaagattaat 580
|||||||||||||||||||||||||||||||||| |||||||||||| ||||||| ||||
Sbjct: 96 aagggtaaatgcatacacatggtatatactgtaatttttatttctcaacaaaagagtaat 155
Query: 581 aatggattca 590
||||||||||
Sbjct: 156 aatggattca 165
Score = 63.9 bits (32), Expect = 2e-008
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 419 ccacctccacctatgcatgctcctccgccgcctgtatactgatc 462
||||||||||| ||||||||||||| |||||||||||||||||
Sbjct: 8 ccacctccaccagtgcatgctcctcctccgcctgtatactgatc 51
>gb|CW063943.1|CW063943 104_309_10522288_114_30136 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10522288, DNA
sequence
Length = 661
Score = 101 bits (51), Expect = 8e-020
Identities = 87/99 (87%)
Strand = Plus / Minus
Query: 217 cctcaagaacttcacctactcgtacaacttcttctgcggcgagccgcaccggtgcctcga 276
||||| ||||||||||||||||||||||| ||||||| |||||||| |||||||||||
Sbjct: 226 cctcaggaacttcacctactcgtacaactacttctgcaccgagccgcggcggtgcctcga 167
Query: 277 ggtgccgcgcgtcgacgaccgccagaactgcatcgccgg 315
| | |||||||||||||| |||||||||||||||||
Sbjct: 166 catccgccgcgtcgacgaccggcagaactgcatcgccgg 128
Score = 46.1 bits (23), Expect = 0.004
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 150 agcagctcgacgtcgcgcacaac 172
|||||||||||||||||||||||
Sbjct: 293 agcagctcgacgtcgcgcacaac 271
>gb|CW337923.1|CW337923 104_838_11484471_116_36126_064 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11484471, DNA
sequence
Length = 668
Score = 101 bits (51), Expect = 8e-020
Identities = 87/99 (87%)
Strand = Plus / Plus
Query: 217 cctcaagaacttcacctactcgtacaacttcttctgcggcgagccgcaccggtgcctcga 276
||||| ||||||||||||||||||||||| ||||||| |||||||| |||||||||||
Sbjct: 396 cctcaggaacttcacctactcgtacaactacttctgcaccgagccgcggcggtgcctcga 455
Query: 277 ggtgccgcgcgtcgacgaccgccagaactgcatcgccgg 315
| | |||||||||||||| |||||||||||||||||
Sbjct: 456 catccgccgcgtcgacgaccggcagaactgcatcgccgg 494
Score = 46.1 bits (23), Expect = 0.004
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 150 agcagctcgacgtcgcgcacaac 172
|||||||||||||||||||||||
Sbjct: 329 agcagctcgacgtcgcgcacaac 351
>gb|CW337924.1|CW337924 104_838_11484471_148_36127_064 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11484471, DNA
sequence
Length = 601
Score = 101 bits (51), Expect = 8e-020
Identities = 87/99 (87%)
Strand = Plus / Minus
Query: 217 cctcaagaacttcacctactcgtacaacttcttctgcggcgagccgcaccggtgcctcga 276
||||| ||||||||||||||||||||||| ||||||| |||||||| |||||||||||
Sbjct: 548 cctcaggaacttcacctactcgtacaactacttctgcaccgagccgcggcggtgcctcga 489
Query: 277 ggtgccgcgcgtcgacgaccgccagaactgcatcgccgg 315
| | |||||||||||||| |||||||||||||||||
Sbjct: 488 catccgccgcgtcgacgaccggcagaactgcatcgccgg 450
>gb|AW679312.1|AW679312 WS1_23_D08.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 462
Score = 101 bits (51), Expect = 8e-020
Identities = 87/99 (87%)
Strand = Plus / Plus
Query: 217 cctcaagaacttcacctactcgtacaacttcttctgcggcgagccgcaccggtgcctcga 276
||||| ||||||||||||||||||||||| ||||||| |||||||| |||||||||||
Sbjct: 51 cctcaggaacttcacctactcgtacaactacttctgcaccgagccgcggcggtgcctcga 110
Query: 277 ggtgccgcgcgtcgacgaccgccagaactgcatcgccgg 315
| | |||||||||||||| |||||||||||||||||
Sbjct: 111 catccgccgcgtcgacgaccggcagaactgcatcgccgg 149
>gb|AW922540.1|AW922540 DG1_20_D08.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 510
Score = 101 bits (51), Expect = 8e-020
Identities = 87/99 (87%)
Strand = Plus / Plus
Query: 217 cctcaagaacttcacctactcgtacaacttcttctgcggcgagccgcaccggtgcctcga 276
||||| ||||||||||||||||||||||| ||||||| |||||||| |||||||||||
Sbjct: 16 cctcaggaacttcacctactcgtacaactacttctgcaccgagccgcggcggtgcctcga 75
Query: 277 ggtgccgcgcgtcgacgaccgccagaactgcatcgccgg 315
| | |||||||||||||| |||||||||||||||||
Sbjct: 76 catccgccgcgtcgacgaccggcagaactgcatcgccgg 114
>gb|BE357975.1|BE357975 DG1_23_H01.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 622
Score = 101 bits (51), Expect = 8e-020
Identities = 87/99 (87%)
Strand = Plus / Plus
Query: 217 cctcaagaacttcacctactcgtacaacttcttctgcggcgagccgcaccggtgcctcga 276
||||| ||||||||||||||||||||||| ||||||| |||||||| |||||||||||
Sbjct: 125 cctcaggaacttcacctactcgtacaactacttctgcaccgagccgcggcggtgcctcga 184
Query: 277 ggtgccgcgcgtcgacgaccgccagaactgcatcgccgg 315
| | |||||||||||||| |||||||||||||||||
Sbjct: 185 catccgccgcgtcgacgaccggcagaactgcatcgccgg 223
Score = 46.1 bits (23), Expect = 0.004
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 150 agcagctcgacgtcgcgcacaac 172
|||||||||||||||||||||||
Sbjct: 58 agcagctcgacgtcgcgcacaac 80
>gb|BE358170.1|BE358170 DG1_24_B06.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 651
Score = 101 bits (51), Expect = 8e-020
Identities = 87/99 (87%)
Strand = Plus / Plus
Query: 217 cctcaagaacttcacctactcgtacaacttcttctgcggcgagccgcaccggtgcctcga 276
||||| ||||||||||||||||||||||| ||||||| |||||||| |||||||||||
Sbjct: 128 cctcaggaacttcacctactcgtacaactacttctgcaccgagccgcggcggtgcctcga 187
Query: 277 ggtgccgcgcgtcgacgaccgccagaactgcatcgccgg 315
| | |||||||||||||| |||||||||||||||||
Sbjct: 188 catccgccgcgtcgacgaccggcagaactgcatcgccgg 226
Score = 46.1 bits (23), Expect = 0.004
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 150 agcagctcgacgtcgcgcacaac 172
|||||||||||||||||||||||
Sbjct: 61 agcagctcgacgtcgcgcacaac 83
>gb|BE358464.1|BE358464 DG1_29_B03.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 645
Score = 101 bits (51), Expect = 8e-020
Identities = 87/99 (87%)
Strand = Plus / Plus
Query: 217 cctcaagaacttcacctactcgtacaacttcttctgcggcgagccgcaccggtgcctcga 276
||||| ||||||||||||||||||||||| ||||||| |||||||| |||||||||||
Sbjct: 123 cctcaggaacttcacctactcgtacaactacttctgcaccgagccgcggcggtgcctcga 182
Query: 277 ggtgccgcgcgtcgacgaccgccagaactgcatcgccgg 315
| | |||||||||||||| |||||||||||||||||
Sbjct: 183 catccgccgcgtcgacgaccggcagaactgcatcgccgg 221
Score = 46.1 bits (23), Expect = 0.004
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 150 agcagctcgacgtcgcgcacaac 172
|||||||||||||||||||||||
Sbjct: 56 agcagctcgacgtcgcgcacaac 78
>gb|BE358854.1|BE358854 DG1_32_D09.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 668
Score = 101 bits (51), Expect = 8e-020
Identities = 87/99 (87%)
Strand = Plus / Plus
Query: 217 cctcaagaacttcacctactcgtacaacttcttctgcggcgagccgcaccggtgcctcga 276
||||| ||||||||||||||||||||||| ||||||| |||||||| |||||||||||
Sbjct: 170 cctcaggaacttcacctactcgtacaactacttctgcaccgagccgcggcggtgcctcga 229
Query: 277 ggtgccgcgcgtcgacgaccgccagaactgcatcgccgg 315
| | |||||||||||||| |||||||||||||||||
Sbjct: 230 catccgccgcgtcgacgaccggcagaactgcatcgccgg 268
Score = 46.1 bits (23), Expect = 0.004
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 150 agcagctcgacgtcgcgcacaac 172
|||||||||||||||||||||||
Sbjct: 103 agcagctcgacgtcgcgcacaac 125
>gb|BE359627.1|BE359627 DG1_54_C02.g2_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 438
Score = 101 bits (51), Expect = 8e-020
Identities = 87/99 (87%)
Strand = Plus / Plus
Query: 217 cctcaagaacttcacctactcgtacaacttcttctgcggcgagccgcaccggtgcctcga 276
||||| ||||||||||||||||||||||| ||||||| |||||||| |||||||||||
Sbjct: 194 cctcaggaacttcacctactcgtacaactacttctgcaccgagccgcggcggtgcctcga 253
Query: 277 ggtgccgcgcgtcgacgaccgccagaactgcatcgccgg 315
| | |||||||||||||| |||||||||||||||||
Sbjct: 254 catccgccgcgtcgacgaccggcagaactgcatcgccgg 292
Score = 46.1 bits (23), Expect = 0.004
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 150 agcagctcgacgtcgcgcacaac 172
|||||||||||||||||||||||
Sbjct: 127 agcagctcgacgtcgcgcacaac 149
>gb|BE359916.1|BE359916 DG1_58_D02.g2_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 396
Score = 101 bits (51), Expect = 8e-020
Identities = 87/99 (87%)
Strand = Plus / Plus
Query: 217 cctcaagaacttcacctactcgtacaacttcttctgcggcgagccgcaccggtgcctcga 276
||||| ||||||||||||||||||||||| ||||||| |||||||| |||||||||||
Sbjct: 51 cctcaggaacttcacctactcgtacaactacttctgcaccgagccgcggcggtgcctcga 110
Query: 277 ggtgccgcgcgtcgacgaccgccagaactgcatcgccgg 315
| | |||||||||||||| |||||||||||||||||
Sbjct: 111 catccgccgcgtcgacgaccggcagaactgcatcgccgg 149
>gb|BE360023.1|BE360023 DG1_60_D11.g2_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 570
Score = 101 bits (51), Expect = 8e-020
Identities = 87/99 (87%)
Strand = Plus / Plus
Query: 217 cctcaagaacttcacctactcgtacaacttcttctgcggcgagccgcaccggtgcctcga 276
||||| ||||||||||||||||||||||| ||||||| |||||||| |||||||||||
Sbjct: 124 cctcaggaacttcacctactcgtacaactacttctgcaccgagccgcggcggtgcctcga 183
Query: 277 ggtgccgcgcgtcgacgaccgccagaactgcatcgccgg 315
| | |||||||||||||| |||||||||||||||||
Sbjct: 184 catccgccgcgtcgacgaccggcagaactgcatcgccgg 222
Score = 46.1 bits (23), Expect = 0.004
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 150 agcagctcgacgtcgcgcacaac 172
|||||||||||||||||||||||
Sbjct: 57 agcagctcgacgtcgcgcacaac 79
>gb|BE360131.1|BE360131 DG1_61_C06.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 424
Score = 101 bits (51), Expect = 8e-020
Identities = 87/99 (87%)
Strand = Plus / Plus
Query: 217 cctcaagaacttcacctactcgtacaacttcttctgcggcgagccgcaccggtgcctcga 276
||||| ||||||||||||||||||||||| ||||||| |||||||| |||||||||||
Sbjct: 175 cctcaggaacttcacctactcgtacaactacttctgcaccgagccgcggcggtgcctcga 234
Query: 277 ggtgccgcgcgtcgacgaccgccagaactgcatcgccgg 315
| | |||||||||||||| |||||||||||||||||
Sbjct: 235 catccgccgcgtcgacgaccggcagaactgcatcgccgg 273
Score = 46.1 bits (23), Expect = 0.004
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 150 agcagctcgacgtcgcgcacaac 172
|||||||||||||||||||||||
Sbjct: 108 agcagctcgacgtcgcgcacaac 130
>gb|BE360177.1|BE360177 DG1_61_C06.g2_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 425
Score = 101 bits (51), Expect = 8e-020
Identities = 87/99 (87%)
Strand = Plus / Plus
Query: 217 cctcaagaacttcacctactcgtacaacttcttctgcggcgagccgcaccggtgcctcga 276
||||| ||||||||||||||||||||||| ||||||| |||||||| |||||||||||
Sbjct: 61 cctcaggaacttcacctactcgtacaactacttctgcaccgagccgcggcggtgcctcga 120
Query: 277 ggtgccgcgcgtcgacgaccgccagaactgcatcgccgg 315
| | |||||||||||||| |||||||||||||||||
Sbjct: 121 catccgccgcgtcgacgaccggcagaactgcatcgccgg 159
>gb|BE362457.1|BE362457 DG1_86_F01.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 402
Score = 101 bits (51), Expect = 8e-020
Identities = 87/99 (87%)
Strand = Plus / Plus
Query: 217 cctcaagaacttcacctactcgtacaacttcttctgcggcgagccgcaccggtgcctcga 276
||||| ||||||||||||||||||||||| ||||||| |||||||| |||||||||||
Sbjct: 176 cctcaggaacttcacctactcgtacaactacttctgcaccgagccgcggcggtgcctcga 235
Query: 277 ggtgccgcgcgtcgacgaccgccagaactgcatcgccgg 315
| | |||||||||||||| |||||||||||||||||
Sbjct: 236 catccgccgcgtcgacgaccggcagaactgcatcgccgg 274
Score = 46.1 bits (23), Expect = 0.004
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 150 agcagctcgacgtcgcgcacaac 172
|||||||||||||||||||||||
Sbjct: 109 agcagctcgacgtcgcgcacaac 131
>gb|BG102547.1|BG102547 RHIZ2_34_D08.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 513
Score = 101 bits (51), Expect = 8e-020
Identities = 87/99 (87%)
Strand = Plus / Plus
Query: 217 cctcaagaacttcacctactcgtacaacttcttctgcggcgagccgcaccggtgcctcga 276
||||| ||||||||||||||||||||||| ||||||| |||||||| |||||||||||
Sbjct: 133 cctcaggaacttcacctactcgtacaactacttctgcaccgagccgcggcggtgcctcga 192
Query: 277 ggtgccgcgcgtcgacgaccgccagaactgcatcgccgg 315
| | |||||||||||||| |||||||||||||||||
Sbjct: 193 catccgccgcgtcgacgaccggcagaactgcatcgccgg 231
Score = 46.1 bits (23), Expect = 0.004
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 150 agcagctcgacgtcgcgcacaac 172
|||||||||||||||||||||||
Sbjct: 66 agcagctcgacgtcgcgcacaac 88
>gb|BG323022.1|BG323022 EM1_14_A04.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 427
Score = 101 bits (51), Expect = 8e-020
Identities = 87/99 (87%)
Strand = Plus / Plus
Query: 217 cctcaagaacttcacctactcgtacaacttcttctgcggcgagccgcaccggtgcctcga 276
||||| ||||||||||||||||||||||| ||||||| |||||||| |||||||||||
Sbjct: 53 cctcaggaacttcacctactcgtacaactacttctgcaccgagccgcggcggtgcctcga 112
Query: 277 ggtgccgcgcgtcgacgaccgccagaactgcatcgccgg 315
| | |||||||||||||| |||||||||||||||||
Sbjct: 113 catccgccgcgtcgacgaccggcagaactgcatcgccgg 151
>gb|CB928030.1|CB928030 ABA1_36_D01.b1_A012 Abscisic acid-treated seedlings Sorghum bicolor
cDNA clone ABA1_36_D01_A012 3', mRNA sequence
Length = 484
Score = 101 bits (51), Expect = 8e-020
Identities = 87/99 (87%)
Strand = Plus / Plus
Query: 217 cctcaagaacttcacctactcgtacaacttcttctgcggcgagccgcaccggtgcctcga 276
||||| ||||||||||||||||||||||| ||||||| |||||||| |||||||||||
Sbjct: 14 cctcaggaacttcacctactcgtacaactacttctgcaccgagccgcggcggtgcctcga 73
Query: 277 ggtgccgcgcgtcgacgaccgccagaactgcatcgccgg 315
| | |||||||||||||| |||||||||||||||||
Sbjct: 74 catccgccgcgtcgacgaccggcagaactgcatcgccgg 112
>gb|CD206011.1|CD206011 HS1_20_G11.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_20_G11_A012 3', mRNA sequence
Length = 648
Score = 101 bits (51), Expect = 8e-020
Identities = 87/99 (87%)
Strand = Plus / Plus
Query: 217 cctcaagaacttcacctactcgtacaacttcttctgcggcgagccgcaccggtgcctcga 276
||||| ||||||||||||||||||||||| ||||||| |||||||| |||||||||||
Sbjct: 288 cctcaggaacttcacctactcgtacaactacttctgcaccgagccgcggcggtgcctcga 347
Query: 277 ggtgccgcgcgtcgacgaccgccagaactgcatcgccgg 315
| | |||||||||||||| |||||||||||||||||
Sbjct: 348 catccgccgcgtcgacgaccggcagaactgcatcgccgg 386
Score = 46.1 bits (23), Expect = 0.004
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 150 agcagctcgacgtcgcgcacaac 172
|||||||||||||||||||||||
Sbjct: 221 agcagctcgacgtcgcgcacaac 243
>gb|CD206826.1|CD206826 HS1_25_E08.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_25_E08_A012 3', mRNA sequence
Length = 599
Score = 101 bits (51), Expect = 8e-020
Identities = 87/99 (87%)
Strand = Plus / Plus
Query: 217 cctcaagaacttcacctactcgtacaacttcttctgcggcgagccgcaccggtgcctcga 276
||||| ||||||||||||||||||||||| ||||||| |||||||| |||||||||||
Sbjct: 122 cctcaggaacttcacctactcgtacaactacttctgcaccgagccgcggcggtgcctcga 181
Query: 277 ggtgccgcgcgtcgacgaccgccagaactgcatcgccgg 315
| | |||||||||||||| |||||||||||||||||
Sbjct: 182 catccgccgcgtcgacgaccggcagaactgcatcgccgg 220
Score = 46.1 bits (23), Expect = 0.004
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 150 agcagctcgacgtcgcgcacaac 172
|||||||||||||||||||||||
Sbjct: 55 agcagctcgacgtcgcgcacaac 77
>gb|CD208770.1|CD208770 HS1_44_F11.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_44_F11_A012 3', mRNA sequence
Length = 573
Score = 101 bits (51), Expect = 8e-020
Identities = 87/99 (87%)
Strand = Plus / Plus
Query: 217 cctcaagaacttcacctactcgtacaacttcttctgcggcgagccgcaccggtgcctcga 276
||||| ||||||||||||||||||||||| ||||||| |||||||| |||||||||||
Sbjct: 98 cctcaggaacttcacctactcgtacaactacttctgcaccgagccgcggcggtgcctcga 157
Query: 277 ggtgccgcgcgtcgacgaccgccagaactgcatcgccgg 315
| | |||||||||||||| |||||||||||||||||
Sbjct: 158 catccgccgcgtcgacgaccggcagaactgcatcgccgg 196
Score = 46.1 bits (23), Expect = 0.004
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 150 agcagctcgacgtcgcgcacaac 172
|||||||||||||||||||||||
Sbjct: 31 agcagctcgacgtcgcgcacaac 53
>gb|CD221002.1|CD221002 CCC1_73_D05.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_73_D05_A007 3', mRNA sequence
Length = 647
Score = 101 bits (51), Expect = 8e-020
Identities = 87/99 (87%)
Strand = Plus / Plus
Query: 217 cctcaagaacttcacctactcgtacaacttcttctgcggcgagccgcaccggtgcctcga 276
||||| ||||||||||||||||||||||| ||||||| |||||||| |||||||||||
Sbjct: 120 cctcaggaacttcacctactcgtacaactacttctgcaccgagccgcggcggtgcctcga 179
Query: 277 ggtgccgcgcgtcgacgaccgccagaactgcatcgccgg 315
| | |||||||||||||| |||||||||||||||||
Sbjct: 180 catccgccgcgtcgacgaccggcagaactgcatcgccgg 218
Score = 46.1 bits (23), Expect = 0.004
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 150 agcagctcgacgtcgcgcacaac 172
|||||||||||||||||||||||
Sbjct: 53 agcagctcgacgtcgcgcacaac 75
>gb|CD221984.1|CD221984 CCC1_1_H04.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_1_H04_A007 3', mRNA sequence
Length = 561
Score = 101 bits (51), Expect = 8e-020
Identities = 87/99 (87%)
Strand = Plus / Plus
Query: 217 cctcaagaacttcacctactcgtacaacttcttctgcggcgagccgcaccggtgcctcga 276
||||| ||||||||||||||||||||||| ||||||| |||||||| |||||||||||
Sbjct: 127 cctcaggaacttcacctactcgtacaactacttctgcaccgagccgcggcggtgcctcga 186
Query: 277 ggtgccgcgcgtcgacgaccgccagaactgcatcgccgg 315
| | |||||||||||||| |||||||||||||||||
Sbjct: 187 catccgccgcgtcgacgaccggcagaactgcatcgccgg 225
Score = 46.1 bits (23), Expect = 0.004
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 150 agcagctcgacgtcgcgcacaac 172
|||||||||||||||||||||||
Sbjct: 60 agcagctcgacgtcgcgcacaac 82
>gb|CD222306.1|CD222306 CCC1_21_A12.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_21_A12_A007 3', mRNA sequence
Length = 627
Score = 101 bits (51), Expect = 8e-020
Identities = 87/99 (87%)
Strand = Plus / Plus
Query: 217 cctcaagaacttcacctactcgtacaacttcttctgcggcgagccgcaccggtgcctcga 276
||||| ||||||||||||||||||||||| ||||||| |||||||| |||||||||||
Sbjct: 115 cctcaggaacttcacctactcgtacaactacttctgcaccgagccgcggcggtgcctcga 174
Query: 277 ggtgccgcgcgtcgacgaccgccagaactgcatcgccgg 315
| | |||||||||||||| |||||||||||||||||
Sbjct: 175 catccgccgcgtcgacgaccggcagaactgcatcgccgg 213
Score = 46.1 bits (23), Expect = 0.004
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 150 agcagctcgacgtcgcgcacaac 172
|||||||||||||||||||||||
Sbjct: 48 agcagctcgacgtcgcgcacaac 70
>gb|CD222617.1|CD222617 CCC1_23_C12.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_23_C12_A007 3', mRNA sequence
Length = 618
Score = 101 bits (51), Expect = 8e-020
Identities = 87/99 (87%)
Strand = Plus / Plus
Query: 217 cctcaagaacttcacctactcgtacaacttcttctgcggcgagccgcaccggtgcctcga 276
||||| ||||||||||||||||||||||| ||||||| |||||||| |||||||||||
Sbjct: 289 cctcaggaacttcacctactcgtacaactacttctgcaccgagccgcggcggtgcctcga 348
Query: 277 ggtgccgcgcgtcgacgaccgccagaactgcatcgccgg 315
| | |||||||||||||| |||||||||||||||||
Sbjct: 349 catccgccgcgtcgacgaccggcagaactgcatcgccgg 387
Score = 46.1 bits (23), Expect = 0.004
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 150 agcagctcgacgtcgcgcacaac 172
|||||||||||||||||||||||
Sbjct: 222 agcagctcgacgtcgcgcacaac 244
>gb|CD223152.1|CD223152 CCC1_26_B11.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_26_B11_A007 3', mRNA sequence
Length = 475
Score = 101 bits (51), Expect = 8e-020
Identities = 87/99 (87%)
Strand = Plus / Plus
Query: 217 cctcaagaacttcacctactcgtacaacttcttctgcggcgagccgcaccggtgcctcga 276
||||| ||||||||||||||||||||||| ||||||| |||||||| |||||||||||
Sbjct: 115 cctcaggaacttcacctactcgtacaactacttctgcaccgagccgcggcggtgcctcga 174
Query: 277 ggtgccgcgcgtcgacgaccgccagaactgcatcgccgg 315
| | |||||||||||||| |||||||||||||||||
Sbjct: 175 catccgccgcgtcgacgaccggcagaactgcatcgccgg 213
Score = 46.1 bits (23), Expect = 0.004
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 150 agcagctcgacgtcgcgcacaac 172
|||||||||||||||||||||||
Sbjct: 48 agcagctcgacgtcgcgcacaac 70
>gb|CD223588.1|CD223588 CCC1_29_B11.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_29_B11_A007 3', mRNA sequence
Length = 605
Score = 101 bits (51), Expect = 8e-020
Identities = 87/99 (87%)
Strand = Plus / Plus
Query: 217 cctcaagaacttcacctactcgtacaacttcttctgcggcgagccgcaccggtgcctcga 276
||||| ||||||||||||||||||||||| ||||||| |||||||| |||||||||||
Sbjct: 257 cctcaggaacttcacctactcgtacaactacttctgcaccgagccgcggcggtgcctcga 316
Query: 277 ggtgccgcgcgtcgacgaccgccagaactgcatcgccgg 315
| | |||||||||||||| |||||||||||||||||
Sbjct: 317 catccgccgcgtcgacgaccggcagaactgcatcgccgg 355
Score = 42.1 bits (21), Expect = 0.063
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 150 agcagctcgacgtcgcgcaca 170
|||||||||||||||||||||
Sbjct: 190 agcagctcgacgtcgcgcaca 210
>gb|CD224280.1|CD224280 CCC1_33_B12.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_33_B12_A007 3', mRNA sequence
Length = 615
Score = 101 bits (51), Expect = 8e-020
Identities = 87/99 (87%)
Strand = Plus / Plus
Query: 217 cctcaagaacttcacctactcgtacaacttcttctgcggcgagccgcaccggtgcctcga 276
||||| ||||||||||||||||||||||| ||||||| |||||||| |||||||||||
Sbjct: 126 cctcaggaacttcacctactcgtacaactacttctgcaccgagccgcggcggtgcctcga 185
Query: 277 ggtgccgcgcgtcgacgaccgccagaactgcatcgccgg 315
| | |||||||||||||| |||||||||||||||||
Sbjct: 186 catccgccgcgtcgacgaccggcagaactgcatcgccgg 224
Score = 46.1 bits (23), Expect = 0.004
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 150 agcagctcgacgtcgcgcacaac 172
|||||||||||||||||||||||
Sbjct: 59 agcagctcgacgtcgcgcacaac 81
>gb|CD225385.1|CD225385 CCC1_3_E05.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_3_E05_A007 3', mRNA sequence
Length = 612
Score = 101 bits (51), Expect = 8e-020
Identities = 87/99 (87%)
Strand = Plus / Plus
Query: 217 cctcaagaacttcacctactcgtacaacttcttctgcggcgagccgcaccggtgcctcga 276
||||| ||||||||||||||||||||||| ||||||| |||||||| |||||||||||
Sbjct: 122 cctcaggaacttcacctactcgtacaactacttctgcaccgagccgcggcggtgcctcga 181
Query: 277 ggtgccgcgcgtcgacgaccgccagaactgcatcgccgg 315
| | |||||||||||||| |||||||||||||||||
Sbjct: 182 catccgccgcgtcgacgaccggcagaactgcatcgccgg 220
Score = 46.1 bits (23), Expect = 0.004
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 150 agcagctcgacgtcgcgcacaac 172
|||||||||||||||||||||||
Sbjct: 55 agcagctcgacgtcgcgcacaac 77
>gb|CD226206.1|CD226206 CCC1_44_F01.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_44_F01_A007 3', mRNA sequence
Length = 590
Score = 101 bits (51), Expect = 8e-020
Identities = 87/99 (87%)
Strand = Plus / Plus
Query: 217 cctcaagaacttcacctactcgtacaacttcttctgcggcgagccgcaccggtgcctcga 276
||||| ||||||||||||||||||||||| ||||||| |||||||| |||||||||||
Sbjct: 122 cctcaggaacttcacctactcgtacaactacttctgcaccgagccgcggcggtgcctcga 181
Query: 277 ggtgccgcgcgtcgacgaccgccagaactgcatcgccgg 315
| | |||||||||||||| |||||||||||||||||
Sbjct: 182 catccgccgcgtcgacgaccggcagaactgcatcgccgg 220
Score = 46.1 bits (23), Expect = 0.004
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 150 agcagctcgacgtcgcgcacaac 172
|||||||||||||||||||||||
Sbjct: 55 agcagctcgacgtcgcgcacaac 77
>gb|CD227866.1|CD227866 CCC1_56_E07.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_56_E07_A007 3', mRNA sequence
Length = 642
Score = 101 bits (51), Expect = 8e-020
Identities = 87/99 (87%)
Strand = Plus / Plus
Query: 217 cctcaagaacttcacctactcgtacaacttcttctgcggcgagccgcaccggtgcctcga 276
||||| ||||||||||||||||||||||| ||||||| |||||||| |||||||||||
Sbjct: 289 cctcaggaacttcacctactcgtacaactacttctgcaccgagccgcggcggtgcctcga 348
Query: 277 ggtgccgcgcgtcgacgaccgccagaactgcatcgccgg 315
| | |||||||||||||| |||||||||||||||||
Sbjct: 349 catccgccgcgtcgacgaccggcagaactgcatcgccgg 387
Score = 46.1 bits (23), Expect = 0.004
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 150 agcagctcgacgtcgcgcacaac 172
|||||||||||||||||||||||
Sbjct: 222 agcagctcgacgtcgcgcacaac 244
>gb|CD228019.1|CD228019 CCC1_5_G06.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_5_G06_A007 3', mRNA sequence
Length = 594
Score = 101 bits (51), Expect = 8e-020
Identities = 87/99 (87%)
Strand = Plus / Plus
Query: 217 cctcaagaacttcacctactcgtacaacttcttctgcggcgagccgcaccggtgcctcga 276
||||| ||||||||||||||||||||||| ||||||| |||||||| |||||||||||
Sbjct: 129 cctcaggaacttcacctactcgtacaactacttctgcaccgagccgcggcggtgcctcga 188
Query: 277 ggtgccgcgcgtcgacgaccgccagaactgcatcgccgg 315
| | |||||||||||||| |||||||||||||||||
Sbjct: 189 catccgccgcgtcgacgaccggcagaactgcatcgccgg 227
Score = 46.1 bits (23), Expect = 0.004
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 150 agcagctcgacgtcgcgcacaac 172
|||||||||||||||||||||||
Sbjct: 62 agcagctcgacgtcgcgcacaac 84
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 209,333
Number of Sequences: 832831
Number of extensions: 209333
Number of successful extensions: 61779
Number of sequences better than 0.5: 117
Number of HSP's better than 0.5 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 61477
Number of HSP's gapped (non-prelim): 240
length of query: 649
length of database: 491,359,669
effective HSP length: 19
effective length of query: 630
effective length of database: 475,535,880
effective search space: 299587604400
effective search space used: 299587604400
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)