BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3665414.2.1
(3330 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BM325071.1|BM325071 PIC1_39_D08.b1_A002 Pathogen-infecte... 894 0.0
gb|BM325667.1|BM325667 PIC1_47_C12.b1_A002 Pathogen-infecte... 852 0.0
gb|CD205100.1|CD205100 HS1_12_D05.b1_A012 Heat-shocked seed... 813 0.0
gb|BM326604.1|BM326604 PIC1_59_C05.b1_A002 Pathogen-infecte... 763 0.0
gb|BM324737.1|BM324737 PIC1_35_A07.b1_A002 Pathogen-infecte... 684 0.0
gb|BE596005.1|BE596005 PI1_51_B03.g1_A002 Pathogen induced ... 666 0.0
gb|CD462204.1|CD462204 SA1_40_B09.b1_A002 Salicylic acid-tr... 666 0.0
gb|BE596224.1|BE596224 PI1_51_B03.b1_A002 Pathogen induced ... 640 0.0
gb|BM329541.1|BM329541 PIC1_39_D08.g1_A002 Pathogen-infecte... 628 e-178
gb|BM325513.1|BM325513 PIC1_45_E03.b1_A002 Pathogen-infecte... 585 e-164
gb|BM329226.1|BM329226 PIC1_35_A07.g1_A002 Pathogen-infecte... 484 e-134
gb|BM330114.1|BM330114 PIC1_47_C12.g1_A002 Pathogen-infecte... 484 e-134
gb|BM331672.1|BM331672 PIC1_59_C05.g1_A002 Pathogen-infecte... 484 e-134
gb|AW671681.1|AW671681 LG1_349_E04.b1_A002 Light Grown 1 (L... 482 e-133
gb|BM329963.1|BM329963 PIC1_45_E03.g1_A002 Pathogen-infecte... 404 e-110
gb|BM323435.1|BM323435 PIC1_19_C05.b1_A002 Pathogen-infecte... 353 7e-095
gb|CW049057.1|CW049057 104_288_10513803_114_30200 Sorghum m... 305 1e-080
gb|CW441451.1|CW441451 fsbb001f160j18k0 Sorghum methylation... 204 4e-050
gb|CW462112.1|CW462112 fsbb001f210b16f0 Sorghum methylation... 196 9e-048
gb|CW441450.1|CW441450 fsbb001f160j18f0 Sorghum methylation... 153 1e-034
gb|CW462113.1|CW462113 fsbb001f210b16k0 Sorghum methylation... 151 5e-034
gb|CD212899.1|CD212899 HS1_17_E04.b1_A012 Heat-shocked seed... 109 2e-021
gb|CW049058.1|CW049058 104_288_10513803_115_30199 Sorghum m... 105 3e-020
gb|CW358121.1|CW358121 fsbb001f025b15f0 Sorghum methylation... 74 9e-011
gb|BM323503.1|BM323503 PIC1_20_A11.b1_A002 Pathogen-infecte... 74 9e-011
gb|BM326196.1|BM326196 PIC1_72_B08.b1_A002 Pathogen-infecte... 74 9e-011
gb|BM327936.1|BM327936 PIC1_19_C05.g1_A002 Pathogen-infecte... 56 2e-005
gb|BZ340259.1|BZ340259 ic37f12.g1 WGS-SbicolorF (JM107 adap... 54 9e-005
gb|CW310946.1|CW310946 104_800_11469977_148_35757_075 Sorgh... 54 9e-005
gb|CL163517.1|CL163517 104_356_10807200_116_31811_336 Sorgh... 50 0.001
gb|CW186644.1|CW186644 104_604_11166676_116_36708_004 Sorgh... 50 0.001
gb|CW786105.1|CW786105 SP__Ba0019B09.f SP__Ba Sorghum propi... 50 0.001
gb|CD205196.1|CD205196 HS1_12_D05.g1_A012 Heat-shocked seed... 50 0.001
gb|CD462285.1|CD462285 SA1_40_B09.g1_A002 Salicylic acid-tr... 50 0.001
gb|BG159398.1|BG159398 OV2_7_D02.g1_A002 Ovary 2 (OV2) Sorg... 48 0.005
gb|CD236213.1|CD236213 SS1_32_H04.g1_A012 Salt-stressed see... 48 0.005
gb|CL163516.1|CL163516 104_356_10807200_114_31810_336 Sorgh... 46 0.021
gb|CW028967.1|CW028967 104_256_10499406_116_30400 Sorghum m... 46 0.021
gb|CW131679.1|CW131679 104_514_11115800_148_34789_020 Sorgh... 46 0.021
gb|CD203755.1|CD203755 HS1_1_E05.g1_A012 Heat-shocked seedl... 46 0.021
gb|CD207465.1|CD207465 HS1_65_A07.g1_A012 Heat-shocked seed... 46 0.021
gb|CD211922.1|CD211922 HS1_67_C08.g1_A012 Heat-shocked seed... 46 0.021
gb|CD212111.1|CD212111 HS1_68_E03.g1_A012 Heat-shocked seed... 46 0.021
gb|CD230437.1|CD230437 SS1_43_D10.g1_A012 Salt-stressed see... 46 0.021
gb|CD232632.1|CD232632 SS1_46_E08.g1_A012 Salt-stressed see... 46 0.021
gb|CD233268.1|CD233268 SS1_12_D08.g1_A012 Salt-stressed see... 46 0.021
gb|CD233975.1|CD233975 SS1_5_E03.g1_A012 Salt-stressed seed... 46 0.021
emb|AX146656.1| Sequence 7 from Patent WO0134818 46 0.021
emb|AX146657.1| Sequence 8 from Patent WO0134818 46 0.021
gb|AY372819.1| Sorghum bicolor P-glycoprotein 1 (PGP1) gene... 46 0.021
gb|BZ345761.1|BZ345761 ht56g03.b1 WGS-SbicolorF (JM107 adap... 44 0.083
gb|CL154062.1|CL154062 104_338_10781133_114_31369_381 Sorgh... 44 0.083
gb|CL154063.1|CL154063 104_338_10781133_116_31370_381 Sorgh... 44 0.083
gb|CL195436.1|CL195436 104_420_10942376_114_32301_018 Sorgh... 44 0.083
gb|CW066840.1|CW066840 104_314_10523900_115_30127 Sorghum m... 44 0.083
gb|CW098169.1|CW098169 104_464_11002862_148_34365_053 Sorgh... 44 0.083
gb|CW157713.1|CW157713 104_561_11147672_116_36390_028 Sorgh... 44 0.083
gb|CW243885.1|CW243885 104_704_11220293_116_37577_021 Sorgh... 44 0.083
gb|CW243886.1|CW243886 104_704_11220293_148_37578_021 Sorgh... 44 0.083
gb|CW312864.1|CW312864 104_802_11470985_116_35782_065 Sorgh... 44 0.083
gb|CW399362.1|CW399362 fsbb001f089c20k0 Sorghum methylation... 44 0.083
gb|CW441867.1|CW441867 fsbb001f161d18k0 Sorghum methylation... 44 0.083
gb|AW563891.1|AW563891 LG1_272_C09.b1_A002 Light Grown 1 (L... 44 0.083
gb|AW564060.1|AW564060 LG1_281_C03.b1_A002 Light Grown 1 (L... 44 0.083
gb|AW564569.1|AW564569 LG1_296_C12.b1_A002 Light Grown 1 (L... 44 0.083
gb|AW564747.1|AW564747 LG1_301_E02.b1_A002 Light Grown 1 (L... 44 0.083
gb|BE125201.1|BE125201 DG1_14_F10.b1_A002 Dark Grown 1 (DG1... 44 0.083
gb|BE125061.1|BE125061 DG1_15_F06.b1_A002 Dark Grown 1 (DG1... 44 0.083
gb|BE355308.1|BE355308 DG1_114_C10.b1_A002 Dark Grown 1 (DG... 44 0.083
gb|BE357431.1|BE357431 DG1_15_F06.b2_A002 Dark Grown 1 (DG1... 44 0.083
gb|BE361026.1|BE361026 DG1_69_A01.b1_A002 Dark Grown 1 (DG1... 44 0.083
gb|BE365262.1|BE365262 PI1_26_D11.b1_A002 Pathogen induced ... 44 0.083
gb|BE367457.1|BE367457 PI1_8_F11.b1_A002 Pathogen induced 1... 44 0.083
gb|BF422146.1|BF422146 FM1_12_D08.b1_A003 Floral-Induced Me... 44 0.083
gb|BF657189.1|BF657189 OV2_21_G08.b1_A002 Ovary 2 (OV2) Sor... 44 0.083
gb|BF657209.1|BF657209 OV2_22_A05.b1_A002 Ovary 2 (OV2) Sor... 44 0.083
gb|BG048359.1|BG048359 OV1_13_C02.b1_A002 Ovary 1 (OV1) Sor... 44 0.083
gb|BG158312.1|BG158312 EM1_12_C06.b1_A002 Embryo 1 (EM1) So... 44 0.083
gb|BG241703.1|BG241703 RHIZ2_49_G08.b1_A003 Rhizome2 (RHIZ2... 44 0.083
gb|BG463059.1|BG463059 EM1_47_A06.b1_A002 Embryo 1 (EM1) So... 44 0.083
gb|BG463249.1|BG463249 EM1_48_C06.b1_A002 Embryo 1 (EM1) So... 44 0.083
gb|BG465620.1|BG465620 RHIZ2_46_G04.b1_A003 Rhizome2 (RHIZ2... 44 0.083
gb|BG649674.1|BG649674 RHIZ2_82_B02.b1_A003 Rhizome2 (RHIZ2... 44 0.083
gb|CD220010.1|CD220010 CCC1_60_A12.g1_A007 Callus culture/c... 44 0.083
gb|CD223175.1|CD223175 CCC1_26_C03.g1_A007 Callus culture/c... 44 0.083
gb|CD230026.1|CD230026 SS1_40_H12.g1_A012 Salt-stressed see... 44 0.083
gb|CD428699.1|CD428699 ETH1_35_C11.g1_A002 Ethylene-treated... 44 0.083
gb|CD428422.1|CD428422 ETH1_31_D11.g1_A002 Ethylene-treated... 44 0.083
gb|CD429116.1|CD429116 ETH1_2_G08.g1_A002 Ethylene-treated ... 44 0.083
gb|CD429336.1|CD429336 ETH1_3_D06.g1_A002 Ethylene-treated ... 44 0.083
gb|CD462449.1|CD462449 ETH1_37_E01.g1_A002 Ethylene-treated... 44 0.083
gb|CF482695.1|CF482695 POL1_8_C05.g1_A002 Pollen Sorghum bi... 44 0.083
gb|CF485489.1|CF485489 POL1_31_G07.g1_A002 Pollen Sorghum b... 44 0.083
gb|CF486110.1|CF486110 POL1_35_F08.g1_A002 Pollen Sorghum b... 44 0.083
gb|CF486441.1|CF486441 POL1_37_E08.g1_A002 Pollen Sorghum b... 44 0.083
gb|CF487056.1|CF487056 POL1_41_B03.g1_A002 Pollen Sorghum b... 44 0.083
gb|CF487266.1|CF487266 POL1_42_F04.g1_A002 Pollen Sorghum b... 44 0.083
gb|CF487611.1|CF487611 POL1_44_G11.g1_A002 Pollen Sorghum b... 44 0.083
gb|CF487927.1|CF487927 POL1_46_F04.g1_A002 Pollen Sorghum b... 44 0.083
gb|CF488285.1|CF488285 POL1_48_H04.g1_A002 Pollen Sorghum b... 44 0.083
gb|CN124253.1|CN124253 RHOH1_3_D03.g1_A002 Acid- and alkali... 44 0.083
gb|CN127037.1|CN127037 RHOH1_20_D12.g1_A002 Acid- and alkal... 44 0.083
gb|CN128605.1|CN128605 RHOH1_30_C01.g1_A002 Acid- and alkal... 44 0.083
gb|CN133387.1|CN133387 OX1_11_H11.g1_A002 Oxidatively-stres... 44 0.083
gb|CN134341.1|CN134341 OX1_25_F08.g1_A002 Oxidatively-stres... 44 0.083
gb|CN136387.1|CN136387 OX1_42_E11.g1_A002 Oxidatively-stres... 44 0.083
gb|CN136393.1|CN136393 OX1_42_F08.g1_A002 Oxidatively-stres... 44 0.083
gb|CN137798.1|CN137798 OX1_59_E03.g1_A002 Oxidatively-stres... 44 0.083
gb|CX609263.1|CX609263 ANR1_11_D07.g1_A002 Anaerobic roots ... 44 0.083
gb|CX614899.1|CX614899 GABR1_17_B04.b1_A002 GA- or brassino... 44 0.083
gb|CX614986.1|CX614986 GABR1_17_B04.g1_A002 GA- or brassino... 44 0.083
gb|CX616375.1|CX616375 GABR1_27_C03.g1_A002 GA- or brassino... 44 0.083
gb|CX617243.1|CX617243 GABR1_32_C10.g1_A002 GA- or brassino... 44 0.083
gb|CX621005.1|CX621005 GABR1_55_A01.g1_A002 GA- or brassino... 44 0.083
gb|BZ367896.1|BZ367896 id07b12.b1 WGS-SbicolorF (JM107 adap... 42 0.33
gb|BZ367897.1|BZ367897 id07b12.g1 WGS-SbicolorF (JM107 adap... 42 0.33
gb|BZ695410.1|BZ695410 SP__Ba0063F21.r SP__Ba Sorghum propi... 42 0.33
gb|CL181898.1|CL181898 104_393_10897054_148_31921_046 Sorgh... 42 0.33
gb|CW513274.1|CW513274 115_3_10511424_1_30020 Sorghum unfil... 42 0.33
gb|CW513606.1|CW513606 115_4_10511778_1_30021 Sorghum unfil... 42 0.33
gb|CW125737.1|CW125737 104_506_11112500_148_34725_078 Sorgh... 42 0.33
gb|CW169384.1|CW169384 104_579_11154645_148_36500_089 Sorgh... 42 0.33
gb|CW174877.1|CW174877 104_587_11157639_148_36839_062 Sorgh... 42 0.33
gb|CW184959.1|CW184959 104_602_11165812_116_36692_008 Sorgh... 42 0.33
gb|CW197113.1|CW197113 104_621_11181517_116_36817_057 Sorgh... 42 0.33
gb|CW197114.1|CW197114 104_621_11181517_148_36818_057 Sorgh... 42 0.33
gb|CW247119.1|CW247119 104_708_11221624_116_36078_064 Sorgh... 42 0.33
gb|CW305217.1|CW305217 104_790_11466199_116_35700_024 Sorgh... 42 0.33
gb|CW317381.1|CW317381 104_809_11473385_116_35861_077 Sorgh... 42 0.33
gb|CW320069.1|CW320069 104_812_11474816_116_35889_018 Sorgh... 42 0.33
gb|CW320070.1|CW320070 104_812_11474816_148_35893_018 Sorgh... 42 0.33
gb|CW339514.1|CW339514 104_840_11485312_116_36141_060 Sorgh... 42 0.33
gb|CW339515.1|CW339515 104_840_11485312_148_36140_060 Sorgh... 42 0.33
gb|CW345643.1|CW345643 104_848_11488604_116_36212_068 Sorgh... 42 0.33
gb|CW345644.1|CW345644 104_848_11488604_148_36211_068 Sorgh... 42 0.33
gb|CW357876.1|CW357876 fsbb001f024l14k0 Sorghum methylation... 42 0.33
gb|CW373897.1|CW373897 fsbb001f050i01k0 Sorghum methylation... 42 0.33
gb|CW377657.1|CW377657 fsbb001f056b05k0 Sorghum methylation... 42 0.33
gb|CW387857.1|CW387857 fsbb001f072g04f0 Sorghum methylation... 42 0.33
gb|CW408765.1|CW408765 fsbb001f102m19f0 Sorghum methylation... 42 0.33
gb|CW408766.1|CW408766 fsbb001f102m19k0 Sorghum methylation... 42 0.33
gb|CW455151.1|CW455151 fsbb001f199o13k0 Sorghum methylation... 42 0.33
gb|CW463539.1|CW463539 fsbb001f212d16k0 Sorghum methylation... 42 0.33
gb|CW467456.1|CW467456 fsbb001f219c12k0 Sorghum methylation... 42 0.33
gb|CW789898.1|CW789898 SP__Ba0063F21.r SP__Ba Sorghum propi... 42 0.33
gb|BE595146.1|BE595146 PI1_46_D06.b1_A002 Pathogen induced ... 42 0.33
gb|BE597640.1|BE597640 PI1_72_C07.b1_A002 Pathogen induced ... 42 0.33
gb|BG047946.1|BG047946 OV1_25_G05.g1_A002 Ovary 1 (OV1) Sor... 42 0.33
gb|BG357092.1|BG357092 OV2_9_G08.b1_A002 Ovary 2 (OV2) Sorg... 42 0.33
gb|BG947975.1|BG947975 IP1_7_G08.b1_A002 Immature pannicle ... 42 0.33
gb|BI076251.1|BI076251 IP1_27_G08.b1_A002 Immature pannicle... 42 0.33
gb|BI139861.1|BI139861 IP1_46_E06.b1_A002 Immature pannicle... 42 0.33
gb|BI140085.1|BI140085 IP1_49_G09.b1_A002 Immature pannicle... 42 0.33
gb|CD210657.1|CD210657 HS1_48_G08.g1_A012 Heat-shocked seed... 42 0.33
gb|CD213563.1|CD213563 HS1_41_D11.g1_A012 Heat-shocked seed... 42 0.33
gb|CD425363.1|CD425363 SA1_11_G11.g1_A002 Salicylic acid-tr... 42 0.33
gb|CF427896.1|CF427896 PH1_11_H02.g1_A002 Phosphorous-defic... 42 0.33
gb|CF428209.1|CF428209 PH1_13_E02.g1_A002 Phosphorous-defic... 42 0.33
gb|CF429968.1|CF429968 PH1_25_B07.g1_A002 Phosphorous-defic... 42 0.33
gb|CF432401.1|CF432401 NIT1_13_G09.g1_A002 Nitrogen-deficie... 42 0.33
gb|CF433671.1|CF433671 NIT1_28_B06.g1_A002 Nitrogen-deficie... 42 0.33
gb|CF489474.1|CF489474 POL1_57_F11.g1_A002 Pollen Sorghum b... 42 0.33
gb|CN132873.1|CN132873 OX1_8_F03.g1_A002 Oxidatively-stress... 42 0.33
gb|CX614164.1|CX614164 GABR1_12_A08.g1_A002 GA- or brassino... 42 0.33
gb|CX619752.1|CX619752 GABR1_47_C10.g1_A002 GA- or brassino... 42 0.33
gb|CX621034.1|CX621034 GABR1_55_C09.g1_A002 GA- or brassino... 42 0.33
>gb|BM325071.1|BM325071 PIC1_39_D08.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 599
Score = 894 bits (451), Expect = 0.0
Identities = 556/591 (94%)
Strand = Plus / Plus
Query: 1408 gggaataagaccaggaaatctggtttgcgttcttttatgggccttattggtatgggacat 1467
||||||||||||||||||||||||||||| || |||||||| |||||||||||||| |||
Sbjct: 9 gggaataagaccaggaaatctggtttgcgctcctttatgggtcttattggtatggggcat 68
Query: 1468 gggaatgtagagaagaacattctaaaaccaagggaagatcccctacttgatagcgatgat 1527
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 69 ggaaatgtagagaagaacattctaaaaccaagggaagatccgctacttgatagcgatgat 128
Query: 1528 gagagaccagatagcttcgatgacgatttcaggaagaaagaaatgagaaagggcatagat 1587
||||||||||| ||||| ||||| |||||||||| |||||||||||||| ||| ||||||
Sbjct: 129 gagagaccagaaagctttgatgatgatttcaggaggaaagaaatgagaaggggtatagat 188
Query: 1588 ttggctaccacacttgaacgtattgaaaagaattttgtcatcaccgacccgaggttacca 1647
|||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct: 189 ttggctactacacttgaacgtattgaaaagaattttgtcatcactgacccaaggttaccg 248
Query: 1648 gataatccaattatatttgcatcggatagctttttgcgtttgacagagtattgccgcgaa 1707
|| |||||||||||||||||||| ||||||||||| || |||||||||||||| ||||||
Sbjct: 249 gacaatccaattatatttgcatcagatagctttttacgattgacagagtattgtcgcgaa 308
Query: 1708 gaaatattgggaagaaactgcaggtttcttcaaggacctgaaactgaccgtgggacagta 1767
||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gaagtattgggaagaaattgcaggtttcttcaaggacctgaaactgaccgtgggacagta 368
Query: 1768 aagaagataagagatgccatagataaccaaacagaagttactgttcagctgataaattat 1827
||||||||||| ||||||||||||||||||||||||||||| | |||||||||||| |||
Sbjct: 369 aagaagataagggatgccatagataaccaaacagaagttaccgatcagctgataaactat 428
Query: 1828 acaaagagcggtaagaaattctggaacctctttcacttgcagcctatgcgtgatcagaag 1887
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 429 acaaagagcggtaaaaaattctggaacctctttcacttgcaacctatgcgtgatcagaag 488
Query: 1888 ggtgatgttcaatacttcattggggttcaattggatggaactgagcgtgttcgagaggct 1947
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 489 ggtgaagttcaatacttcattggggttcaattggatggaactgagcgtgttcgagacact 548
Query: 1948 gctgcaaaagatggtgccatactggttaagaaaactgcagacaatattgat 1998
|||||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct: 549 gctgcaaaagatggtgccatgatggttaagaaaactgcagataatattgat 599
>gb|BM325667.1|BM325667 PIC1_47_C12.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 611
Score = 852 bits (430), Expect = 0.0
Identities = 547/586 (93%), Gaps = 10/586 (1%)
Strand = Plus / Plus
Query: 2392 gactattgtgctggtggggaactctttatgctccttgataggcaacctatgaaggttctg 2451
||||||| |||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 29 gactattatgctggcggggaactctttatgctcctcgataggcaacctatgaaggttcta 88
Query: 2452 aaggaggatgcggtcaggttctatgctgcagaagtggtcacagcacttgaatacctacat 2511
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89 aaggaagatgcggttaggttctatgctgcagaagtggtcacagcacttgaatacctacat 148
Query: 2512 tgccaaggtataatctacagagacttaaagccagagaacattttacttcatagagatggg 2571
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 149 tgccaaggtataatctacagagacttaaagccagagaacattttacttcaaagagatggg 208
Query: 2572 cacatttcattgacagactttgatttgtcttgcttgacatcctgccgaccacaagtgttt 2631
|||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 209 cacatttccttgacagactttgatttgtcttgcttgacatcctgccaaccacaagtgttt 268
Query: 2632 cttccacacgatattgataagaagaaaaagaggaggaagagcaggagtaatcccatattt 2691
|||||| | || |||||||||||||| |||||||||||||||||| |||||||||||
Sbjct: 269 cttccagaaga---tgataagaagaaaaggaggaggaagagcaggagcaatcccatattc 325
Query: 2692 tttgctgaaccaatgcgagcatcaaattcttttgttggtacagaggagtacattgcacc- 2750
||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 326 tttgccgagccaatgcgagcatcaaattcttttgttggtacagaggagtacatagcacca 385
Query: 2751 ------ggagattattaccggagctggccatacgagtgctgtagattggtgggcgctagg 2804
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct: 386 gttgtaggagattattaccggagccggccatacaagtgctgtagattggtgggcgctagg 445
Query: 2805 aattcttctatatgagatgttatatggttatacacccttcagagggaaaacaagacaaag 2864
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct: 446 aattcttctatatgagatgttgtatggttatacaccctttagagggaaaacaagacaaag 505
Query: 2865 gacatttgctaatattctgcacaaggatatcagatttcctgcgagcatacaggtgagcct 2924
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 506 gacctttgctaatattctgcacaaggatatcagatttcctgcgagcattcaggtgagcct 565
Query: 2925 ggcggcaaggcagctgatataccggttgctacaccgagaccctgca 2970
|||||||| || |||||||| ||||||||||||| |||||||||
Sbjct: 566 tgcggcaagacaattgatatacaggttgctacaccgggaccctgca 611
>gb|CD205100.1|CD205100 HS1_12_D05.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA clone
HS1_12_D05_A012 3', mRNA sequence
Length = 593
Score = 813 bits (410), Expect = 0.0
Identities = 523/560 (93%), Gaps = 3/560 (0%)
Strand = Plus / Plus
Query: 714 gagggccgccgccgccggtgctggtagagctctcccccgggtgtcggaggagcttcgcgc 773
||||||||||||||||||| || ||||| |||||| | ||||||||||||||||||||
Sbjct: 37 gagggccgccgccgccggtact---agagcgctccccagagtgtcggaggagcttcgcgc 93
Query: 774 cgcgctctcagcgttccagcagaccttcgtcgtgtccgatgccacccgccctgaccaccc 833
||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||| ||||
Sbjct: 94 cgcgctctctgcgttccagcagaccttcgtcgtgtccgatgccactcgccccgactaccc 153
Query: 834 catcctctacgccagcgctggattcttcaacatgacgggctactcctccaatgaggtcgt 893
|||||||||||| || |||||||||||||||||||| || |||||||| |||||||| ||
Sbjct: 154 catcctctacgctagtgctggattcttcaacatgactggttactcctcaaatgaggtggt 213
Query: 894 cggaaggaactgccgcttccttcaaggttctgggaccgaccccgtagagatttccaagat 953
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 214 cggaaggaactgccgcttccttcaaggttctgggactgaccccgtagagatttccaagat 273
Query: 954 cagacaggctctcgcagctgggtcaaattactgtggccgtatcctcaactacaagaagga 1013
||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct: 274 caggcaggctctcgcagctgggtcaaattactgtggtcgtattctcaactacaagaagga 333
Query: 1014 tggcacaccattctggaacctcctaaccgttgcccccataaaggatgaggatggcagggt 1073
||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct: 334 tggtacaccattctggaacctcctaactgttgcccccatcaaggatgaggatggcagggt 393
Query: 1074 cctcaagttcattgggatgcaagtggaagtaagtaagtacacggaaggtaacaaagatac 1133
|||||||||||||||||||||||||||||| ||||||||||| ||||||| ||| |||||
Sbjct: 394 cctcaagttcattgggatgcaagtggaagtgagtaagtacacagaaggtagcaaggatac 453
Query: 1134 tgctcttcgtccaaatggattgccagagtcactcatcaaatatgatgcaaggcagaagga 1193
|||||||| |||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 454 agctcttcgcccaaatggattgccagagtcactcatcaaatatgatgccagacagaagga 513
Query: 1194 tcatgctcgtagctcagtctcggagctcctacttgccctgaaggatccacggtcattgtc 1253
|||||| |||||||||||||| ||||| ||||||||||| ||||||||||| ||||||||
Sbjct: 514 tcatgcccgtagctcagtctcagagcttctacttgccctcaaggatccacgatcattgtc 573
Query: 1254 agaatcaagaaacaatacct 1273
||||||||||||||||||||
Sbjct: 574 agaatcaagaaacaatacct 593
>gb|BM326604.1|BM326604 PIC1_59_C05.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 507
Score = 763 bits (385), Expect = 0.0
Identities = 473/502 (94%), Gaps = 3/502 (0%)
Strand = Plus / Plus
Query: 2165 cagtaaggcctttaggatctggtgatactggcagtgtccacttggtggagttgcttggca 2224
||||||| || |||||||||||||| ||||||||||| || |||||||||||||||||||
Sbjct: 9 cagtaagacccttaggatctggtgacactggcagtgtgcatttggtggagttgcttggca 68
Query: 2225 caggtgaatactttgccatgaaagctatggataaaagtgtcatgcttaaccgaaacaagg 2284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 caggtgaatactttgccatgaaagctatggataaaagtgtcatgcttaaccgaaacaagg 128
Query: 2285 tccatagagctaccgctgaacgacaaatccttgatatgttggaccacccattccttccga 2344
||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |
Sbjct: 129 tccatagagctaccgctgaacgacaaatcttggatatgttggaccacccattccttccaa 188
Query: 2345 cattgtatgcatcatttcagacaaagacacatatatgtcttattgttgactattgtgctg 2404
|||||||||||||||||||||||||||||||| | ||||||||| ||||||| |||||
Sbjct: 189 cattgtatgcatcatttcagacaaagacacatgtgtgtcttattaccgactattatgctg 248
Query: 2405 gtggggaactctttatgctccttgataggcaacctatgaaggttctgaaggaggatgcgg 2464
| |||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||
Sbjct: 249 gcggggaactctttatgctcctcgataggcaacctatgaaggttctaaaggaagatgcgg 308
Query: 2465 tcaggttctatgctgcagaagtggtcacagcacttgaatacctacattgccaaggtataa 2524
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 ttaggttctatgctgcagaagtggtcacagcacttgaatacctacattgccaaggtataa 368
Query: 2525 tctacagagacttaaagccagagaacattttacttcatagagatgggcacatttcattga 2584
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct: 369 tctacagagacttaaagccagagaacattttacttcaaagagatgggcacatttccttga 428
Query: 2585 cagactttgatttgtcttgcttgacatcctgccgaccacaagtgtttcttccacacgata 2644
||||||||||||||||||||||||||||||||| ||||||||||||||||||| | |||
Sbjct: 429 cagactttgatttgtcttgcttgacatcctgccaaccacaagtgtttcttccagaagat- 487
Query: 2645 ttgataagaagaaaaagaggag 2666
||||||||||| | ||||||
Sbjct: 488 --gataagaagaanaggaggag 507
>gb|BM324737.1|BM324737 PIC1_35_A07.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 494
Score = 684 bits (345), Expect = 0.0
Identities = 438/469 (93%), Gaps = 10/469 (2%)
Strand = Plus / Plus
Query: 2392 gactattgtgctggtggggaactctttatgctccttgataggcaacctatgaaggttctg 2451
||||||| |||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 29 gactattatgctggcggggaactctttatgctcctcgataggcaacctatgaaggttcta 88
Query: 2452 aaggaggatgcggtcaggttctatgctgcagaagtggtcacagcacttgaatacctacat 2511
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89 aaggaagatgcggttaggttctatgctgcagaagtggtcacagcacttgaatacctacat 148
Query: 2512 tgccaaggtataatctacagagacttaaagccagagaacattttacttcatagagatggg 2571
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 149 tgccaaggtataatctacagagacttaaagccagagaacattttacttcaaagagatggg 208
Query: 2572 cacatttcattgacagactttgatttgtcttgcttgacatcctgccgaccacaagtgttt 2631
|||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 209 cacatttccttgacagactttgatttgtcttgcttgacatcctgccaaccacaagtgttt 268
Query: 2632 cttccacacgatattgataagaagaaaaagaggaggaagagcaggagtaatcccatattt 2691
|||||| | || |||||||||||||| |||||||||||||||||| |||||||||||
Sbjct: 269 cttccagaaga---tgataagaagaaaaggaggaggaagagcaggagcaatcccatattc 325
Query: 2692 tttgctgaaccaatgcgagcatcaaattcttttgttggtacagaggagtacattgcacc- 2750
||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 326 tttgccgagccaatgcgagcatcaaattcttttgttggtacagaggagtacatagcacca 385
Query: 2751 ------ggagattattaccggagctggccatacgagtgctgtagattggtgggcgctagg 2804
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct: 386 gttgtaggagattattaccggagccggccatacaagtgctgtagattggtgggcgctagg 445
Query: 2805 aattcttctatatgagatgttatatggttatacacccttcagagggaaa 2853
||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct: 446 aattcttctatatgagatgttgtatggttatacaccctttagagggaaa 494
>gb|BE596005.1|BE596005 PI1_51_B03.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 644
Score = 666 bits (336), Expect = 0.0
Identities = 429/460 (93%)
Strand = Plus / Plus
Query: 2646 tgataagaagaaaaagaggaggaagagcaggagtaatcccatattttttgctgaaccaat 2705
|||||||||||||| |||||||||||||||||| ||||||||||| ||||| || |||||
Sbjct: 1 tgataagaagaaaaggaggaggaagagcaggagcaatcccatattctttgccgagccaat 60
Query: 2706 gcgagcatcaaattcttttgttggtacagaggagtacattgcaccggagattattaccgg 2765
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct: 61 gcgagcatcaaattcttttgttggtacagaggagtacatagcaccagagattattaccgg 120
Query: 2766 agctggccatacgagtgctgtagattggtgggcgctaggaattcttctatatgagatgtt 2825
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 agccggccatacaagtgctgtagattggtgggcgctaggaattcttctatatgagatgtt 180
Query: 2826 atatggttatacacccttcagagggaaaacaagacaaaggacatttgctaatattctgca 2885
||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct: 181 gtatggttatacaccctttagagggaaaacaagacaaaggacctttgctaatattctgca 240
Query: 2886 caaggatatcagatttcctgcgagcatacaggtgagcctggcggcaaggcagctgatata 2945
||||||||||||||||||||||||||| ||||||||||| |||||||| || |||||||
Sbjct: 241 caaggatatcagatttcctgcgagcattcaggtgagccttgcggcaagacaattgatata 300
Query: 2946 ccggttgctacaccgagaccctgcaaataggctaggttcctatgagggcgctatggagat 3005
| ||||||||||||| |||||||||||||||||||||||||| ||||| ||||| |||||
Sbjct: 301 caggttgctacaccgggaccctgcaaataggctaggttcctacgagggtgctattgagat 360
Query: 3006 caaacaacaccccttctttcgtggcataaactgggctctagttcgtgccgccacgccccc 3065
|||||||||||||||||| |||||||||||||||||||||||||||||||| || || ||
Sbjct: 361 caaacaacaccccttcttccgtggcataaactgggctctagttcgtgccgcaacacctcc 420
Query: 3066 agagctggaggctcccctccaggatacattggaggccaca 3105
|||| | ||||||||| | || ||||||||||||||||||
Sbjct: 421 agagttagaggctcccttgcaagatacattggaggccaca 460
Score = 85.7 bits (43), Expect = 2e-014
Identities = 58/63 (92%)
Strand = Plus / Plus
Query: 3130 gctcacaccgatatgttctgatcatacattgatccatgatgctacatgttaatttgctta 3189
||||||||||||||||| ||| |||||||||| |||||| |||||||||||||||||| |
Sbjct: 488 gctcacaccgatatgttttgaacatacattgagccatgaagctacatgttaatttgctca 547
Query: 3190 aag 3192
|||
Sbjct: 548 aag 550
Score = 56.0 bits (28), Expect = 2e-005
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 3239 tgagaacaataatgtatgttaaggactaatta 3270
||||||||||||||||||| ||||||||||||
Sbjct: 612 tgagaacaataatgtatgtcaaggactaatta 643
>gb|CD462204.1|CD462204 SA1_40_B09.b1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_40_B09_A002 3', mRNA sequence
Length = 674
Score = 666 bits (336), Expect = 0.0
Identities = 429/460 (93%)
Strand = Plus / Plus
Query: 2646 tgataagaagaaaaagaggaggaagagcaggagtaatcccatattttttgctgaaccaat 2705
|||||||||||||| |||||||||||||||||| ||||||||||| ||||| || |||||
Sbjct: 14 tgataagaagaaaaggaggaggaagagcaggagcaatcccatattctttgccgagccaat 73
Query: 2706 gcgagcatcaaattcttttgttggtacagaggagtacattgcaccggagattattaccgg 2765
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct: 74 gcgagcatcaaattcttttgttggtacagaggagtacatagcaccagagattattaccgg 133
Query: 2766 agctggccatacgagtgctgtagattggtgggcgctaggaattcttctatatgagatgtt 2825
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134 agccggccatacaagtgctgtagattggtgggcgctaggaattcttctatatgagatgtt 193
Query: 2826 atatggttatacacccttcagagggaaaacaagacaaaggacatttgctaatattctgca 2885
||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct: 194 gtatggttatacaccctttagagggaaaacaagacaaaggacctttgctaatattctgca 253
Query: 2886 caaggatatcagatttcctgcgagcatacaggtgagcctggcggcaaggcagctgatata 2945
||||||||||||||||||||||||||| ||||||||||| |||||||| || |||||||
Sbjct: 254 caaggatatcagatttcctgcgagcattcaggtgagccttgcggcaagacaattgatata 313
Query: 2946 ccggttgctacaccgagaccctgcaaataggctaggttcctatgagggcgctatggagat 3005
| ||||||||||||| |||||||||||||||||||||||||| ||||| ||||| |||||
Sbjct: 314 caggttgctacaccgggaccctgcaaataggctaggttcctacgagggtgctattgagat 373
Query: 3006 caaacaacaccccttctttcgtggcataaactgggctctagttcgtgccgccacgccccc 3065
|||||||||||||||||| |||||||||||||||||||||||||||||||| || || ||
Sbjct: 374 caaacaacaccccttcttccgtggcataaactgggctctagttcgtgccgcaacacctcc 433
Query: 3066 agagctggaggctcccctccaggatacattggaggccaca 3105
|||| | ||||||||| | || ||||||||||||||||||
Sbjct: 434 agagttagaggctcccttgcaagatacattggaggccaca 473
Score = 85.7 bits (43), Expect = 2e-014
Identities = 58/63 (92%)
Strand = Plus / Plus
Query: 3130 gctcacaccgatatgttctgatcatacattgatccatgatgctacatgttaatttgctta 3189
||||||||||||||||| ||| |||||||||| |||||| |||||||||||||||||| |
Sbjct: 501 gctcacaccgatatgttttgaacatacattgagccatgaagctacatgttaatttgctca 560
Query: 3190 aag 3192
|||
Sbjct: 561 aag 563
>gb|BE596224.1|BE596224 PI1_51_B03.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 501
Score = 640 bits (323), Expect = 0.0
Identities = 450/493 (91%), Gaps = 12/493 (2%)
Strand = Plus / Plus
Query: 667 ccctccggttccaaccgcaccagcgagagtggcaactccatcgacga---------gagg 717
||||| || ||||||||||||||||||||||| |||||||| ||||| ||||
Sbjct: 12 ccctctggctccaaccgcaccagcgagagtggaaactccattgacgacgacagctcgagg 71
Query: 718 gccgccgccgccggtgctggtagagctctcccccgggtgtcggaggagcttcgcgccgcg 777
||||||||||||||| || ||||| |||||| | ||||||||||||||||||||||||
Sbjct: 72 gccgccgccgccggtact---agagcgctccccagagtgtcggaggagcttcgcgccgcg 128
Query: 778 ctctcagcgttccagcagaccttcgtcgtgtccgatgccacccgccctgaccaccccatc 837
||||| ||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||
Sbjct: 129 ctctctgcgttccagcagaccttcgtcgtgtccgatgccactcgccccgactaccccatc 188
Query: 838 ctctacgccagcgctggattcttcaacatgacgggctactcctccaatgaggtcgtcgga 897
|||||||| || |||||||||||||||||||| || |||||||| |||||||| ||||||
Sbjct: 189 ctctacgctagtgctggattcttcaacatgactggttactcctcaaatgaggtggtcgga 248
Query: 898 aggaactgccgcttccttcaaggttctgggaccgaccccgtagagatttccaagatcaga 957
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 249 aggaactgccgcttccttcaaggttctgggactgaccccgtagagatttccaagatcagg 308
Query: 958 caggctctcgcagctgggtcaaattactgtggccgtatcctcaactacaagaaggatggc 1017
|||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct: 309 caggctctcgcagctgggtcaaattactgtggtcgtattctcaactacaagaaggatggt 368
Query: 1018 acaccattctggaacctcctaaccgttgcccccataaaggatgaggatggcagggtcctc 1077
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct: 369 acaccattctggaacctcctaactgttgcccccatcaaggatgaggatggcagggtcctc 428
Query: 1078 aagttcattgggatgcaagtggaagtaagtaagtacacggaaggtaacaaagatactgct 1137
|||||||||||||||||||||||||| ||||||||||| ||||||| ||| ||||| |||
Sbjct: 429 aagttcattgggatgcaagtggaagtgagtaagtacacagaaggtagcaaggatacagct 488
Query: 1138 cttcgtccaaatg 1150
||||| |||||||
Sbjct: 489 cttcgcccaaatg 501
>gb|BM329541.1|BM329541 PIC1_39_D08.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 657
Score = 628 bits (317), Expect = e-178
Identities = 407/437 (93%)
Strand = Plus / Plus
Query: 2669 agagcaggagtaatcccatattttttgctgaaccaatgcgagcatcaaattcttttgttg 2728
|||||||||| ||||||||||| ||||| || ||||||||||||||||||||||||||||
Sbjct: 1 agagcaggagcaatcccatattctttgccgagccaatgcgagcatcaaattcttttgttg 60
Query: 2729 gtacagaggagtacattgcaccggagattattaccggagctggccatacgagtgctgtag 2788
|||||||||||||||| ||||| ||||||||||||||||| |||||||| ||||||||||
Sbjct: 61 gtacagaggagtacatagcaccagagattattaccggagccggccatacaagtgctgtag 120
Query: 2789 attggtgggcgctaggaattcttctatatgagatgttatatggttatacacccttcagag 2848
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct: 121 attggtgggcgctaggaattcttctatatgagatgttgtatggttatacaccctttagag 180
Query: 2849 ggaaaacaagacaaaggacatttgctaatattctgcacaaggatatcagatttcctgcga 2908
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggaaaacaagacaaaggacctttgctaatattctgcacaaggatatcagatttcctgcga 240
Query: 2909 gcatacaggtgagcctggcggcaaggcagctgatataccggttgctacaccgagaccctg 2968
|||| ||||||||||| |||||||| || |||||||| ||||||||||||| |||||||
Sbjct: 241 gcattcaggtgagccttgcggcaagacaattgatatacaggttgctacaccgggaccctg 300
Query: 2969 caaataggctaggttcctatgagggcgctatggagatcaaacaacaccccttctttcgtg 3028
||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||| ||||
Sbjct: 301 caaataggctaggttcctacgagggtgctattgagatcaaacaacaccccttcttccgtg 360
Query: 3029 gcataaactgggctctagttcgtgccgccacgcccccagagctggaggctcccctccagg 3088
|||||||||||||||||||||||||||| || || |||||| | ||||||||| | || |
Sbjct: 361 gcataaactgggctctagttcgtgccgcaacacctccagagttagaggctcccttgcaag 420
Query: 3089 atacattggaggccaca 3105
|||||||||||||||||
Sbjct: 421 atacattggaggccaca 437
Score = 85.7 bits (43), Expect = 2e-014
Identities = 58/63 (92%)
Strand = Plus / Plus
Query: 3130 gctcacaccgatatgttctgatcatacattgatccatgatgctacatgttaatttgctta 3189
||||||||||||||||| ||| |||||||||| |||||| |||||||||||||||||| |
Sbjct: 465 gctcacaccgatatgttttgaacatacattgagccatgaagctacatgttaatttgctca 524
Query: 3190 aag 3192
|||
Sbjct: 525 aag 527
Score = 56.0 bits (28), Expect = 2e-005
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 3239 tgagaacaataatgtatgttaaggactaatta 3270
||||||||||||||||||| ||||||||||||
Sbjct: 589 tgagaacaataatgtatgtcaaggactaatta 620
>gb|BM325513.1|BM325513 PIC1_45_E03.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 468
Score = 585 bits (295), Expect = e-164
Identities = 355/375 (94%)
Strand = Plus / Plus
Query: 923 ctgggaccgaccccgtagagatttccaagatcagacaggctctcgcagctgggtcaaatt 982
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 9 ctgggactgaccccgtagagatttccaagatcaggcaggctctcgcagctgggtcaaatt 68
Query: 983 actgtggccgtatcctcaactacaagaaggatggcacaccattctggaacctcctaaccg 1042
||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct: 69 actgtggtcgtattctcaactacaagaaggatggtacaccattctggaacctcctaactg 128
Query: 1043 ttgcccccataaaggatgaggatggcagggtcctcaagttcattgggatgcaagtggaag 1102
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 ttgcccccatcaaggatgaggatggcagggtcctcaagttcattgggatgcaagtggaag 188
Query: 1103 taagtaagtacacggaaggtaacaaagatactgctcttcgtccaaatggattgccagagt 1162
| ||||||||||| ||||||| ||| ||||| |||||||| |||||||||||||||||||
Sbjct: 189 tgagtaagtacacagaaggtagcaaggatacagctcttcgcccaaatggattgccagagt 248
Query: 1163 cactcatcaaatatgatgcaaggcagaaggatcatgctcgtagctcagtctcggagctcc 1222
||||||||||||||||||| || |||||||||||||| |||||||||||||| ||||| |
Sbjct: 249 cactcatcaaatatgatgccagacagaaggatcatgcccgtagctcagtctcagagcttc 308
Query: 1223 tacttgccctgaaggatccacggtcattgtcagaatcaagaaacaataccttaaaaagga 1282
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 309 tacttgccctcaaggatccacgatcattgtcagaatcaagaaacaataccttaaaaagga 368
Query: 1283 aatcacaggaatcag 1297
|||||||||||||||
Sbjct: 369 aatcacaggaatcag 383
Score = 99.6 bits (50), Expect = 2e-018
Identities = 62/66 (93%)
Strand = Plus / Plus
Query: 1311 agttcccggcaagagaagctccgaaactggatcccgtcgtaactcacatagtggaatgag 1370
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |
Sbjct: 403 agttcccggcaagagaagctccgaaagtggatcccgtcgtaactcacggagtggaatgcg 462
Query: 1371 aaactc 1376
||||||
Sbjct: 463 aaactc 468
>gb|BM329226.1|BM329226 PIC1_35_A07.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 553
Score = 484 bits (244), Expect = e-134
Identities = 313/336 (93%)
Strand = Plus / Plus
Query: 2770 ggccatacgagtgctgtagattggtgggcgctaggaattcttctatatgagatgttatat 2829
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 2 ggccatacaagtgctgtagattggtgggcgctaggaattcttctatatgagatgttgtat 61
Query: 2830 ggttatacacccttcagagggaaaacaagacaaaggacatttgctaatattctgcacaag 2889
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 62 ggttatacaccctttagagggaaaacaagacaaaggacctttgctaatattctgcacaag 121
Query: 2890 gatatcagatttcctgcgagcatacaggtgagcctggcggcaaggcagctgatataccgg 2949
||||||||||||||||||||||| ||||||||||| |||||||| || |||||||| ||
Sbjct: 122 gatatcagatttcctgcgagcattcaggtgagccttgcggcaagacaattgatatacagg 181
Query: 2950 ttgctacaccgagaccctgcaaataggctaggttcctatgagggcgctatggagatcaaa 3009
||||||||||| |||||||||||||||||||||||||| ||||| ||||| |||||||||
Sbjct: 182 ttgctacaccgggaccctgcaaataggctaggttcctacgagggtgctattgagatcaaa 241
Query: 3010 caacaccccttctttcgtggcataaactgggctctagttcgtgccgccacgcccccagag 3069
|||||||||||||| |||||||||||||||||||||||||||||||| || || ||||||
Sbjct: 242 caacaccccttcttccgtggcataaactgggctctagttcgtgccgcaacacctccagag 301
Query: 3070 ctggaggctcccctccaggatacattggaggccaca 3105
| ||||||||| | || ||||||||||||||||||
Sbjct: 302 ttagaggctcccttgcaagatacattggaggccaca 337
Score = 85.7 bits (43), Expect = 2e-014
Identities = 58/63 (92%)
Strand = Plus / Plus
Query: 3130 gctcacaccgatatgttctgatcatacattgatccatgatgctacatgttaatttgctta 3189
||||||||||||||||| ||| |||||||||| |||||| |||||||||||||||||| |
Sbjct: 365 gctcacaccgatatgttttgaacatacattgagccatgaagctacatgttaatttgctca 424
Query: 3190 aag 3192
|||
Sbjct: 425 aag 427
Score = 56.0 bits (28), Expect = 2e-005
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 3239 tgagaacaataatgtatgttaaggactaatta 3270
||||||||||||||||||| ||||||||||||
Sbjct: 489 tgagaacaataatgtatgtcaaggactaatta 520
>gb|BM330114.1|BM330114 PIC1_47_C12.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 606
Score = 484 bits (244), Expect = e-134
Identities = 332/362 (91%), Gaps = 7/362 (1%)
Strand = Plus / Plus
Query: 2727 tggtacagaggagtacattgcacc-------ggagattattaccggagctggccatacga 2779
|||||||||||||||||| ||||| |||||||||||||||||| |||||||| |
Sbjct: 1 tggtacagaggagtacatagcaccagttgtaggagattattaccggagccggccatacaa 60
Query: 2780 gtgctgtagattggtgggcgctaggaattcttctatatgagatgttatatggttatacac 2839
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 61 gtgctgtagattggtgggcgctaggaattcttctatatgagatgttgtatggttatacac 120
Query: 2840 ccttcagagggaaaacaagacaaaggacatttgctaatattctgcacaaggatatcagat 2899
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 121 cctttagagggaaaacaagacaaaggacctttgctaatattctgcacaaggatatcagat 180
Query: 2900 ttcctgcgagcatacaggtgagcctggcggcaaggcagctgatataccggttgctacacc 2959
||||||||||||| ||||||||||| |||||||| || |||||||| ||||||||||||
Sbjct: 181 ttcctgcgagcattcaggtgagccttgcggcaagacaattgatatacaggttgctacacc 240
Query: 2960 gagaccctgcaaataggctaggttcctatgagggcgctatggagatcaaacaacacccct 3019
| |||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||
Sbjct: 241 gggaccctgcaaataggctaggttcctacgagggtgctattgagatcaaacaacacccct 300
Query: 3020 tctttcgtggcataaactgggctctagttcgtgccgccacgcccccagagctggaggctc 3079
|||| |||||||||||||||||| ||||||||||||| || || |||||| | |||||||
Sbjct: 301 tcttccgtggcataaactgggctttagttcgtgccgcaacacctccagagttagaggctc 360
Query: 3080 cc 3081
||
Sbjct: 361 cc 362
Score = 56.0 bits (28), Expect = 2e-005
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 3239 tgagaacaataatgtatgttaaggactaatta 3270
||||||||||||||||||| ||||||||||||
Sbjct: 538 tgagaacaataatgtatgtcaaggactaatta 569
Score = 48.1 bits (24), Expect = 0.005
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 3141 tatgttctgatcatacattgatccatgatgctacatgttaatttgcttaaag 3192
|||||| ||| |||||||| |||||| |||||||||||||||||| ||||
Sbjct: 425 tatgttttgaacatacattcccccatgaagctacatgttaatttgctcaaag 476
>gb|BM331672.1|BM331672 PIC1_59_C05.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 558
Score = 484 bits (244), Expect = e-134
Identities = 313/336 (93%)
Strand = Plus / Plus
Query: 2770 ggccatacgagtgctgtagattggtgggcgctaggaattcttctatatgagatgttatat 2829
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 3 ggccatacaagtgctgtagattggtgggcgctaggaattcttctatatgagatgttgtat 62
Query: 2830 ggttatacacccttcagagggaaaacaagacaaaggacatttgctaatattctgcacaag 2889
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 63 ggttatacaccctttagagggaaaacaagacaaaggacctttgctaatattctgcacaag 122
Query: 2890 gatatcagatttcctgcgagcatacaggtgagcctggcggcaaggcagctgatataccgg 2949
||||||||||||||||||||||| ||||||||||| |||||||| || |||||||| ||
Sbjct: 123 gatatcagatttcctgcgagcattcaggtgagccttgcggcaagacaattgatatacagg 182
Query: 2950 ttgctacaccgagaccctgcaaataggctaggttcctatgagggcgctatggagatcaaa 3009
||||||||||| |||||||||||||||||||||||||| ||||| ||||| |||||||||
Sbjct: 183 ttgctacaccgggaccctgcaaataggctaggttcctacgagggtgctattgagatcaaa 242
Query: 3010 caacaccccttctttcgtggcataaactgggctctagttcgtgccgccacgcccccagag 3069
|||||||||||||| |||||||||||||||||||||||||||||||| || || ||||||
Sbjct: 243 caacaccccttcttccgtggcataaactgggctctagttcgtgccgcaacacctccagag 302
Query: 3070 ctggaggctcccctccaggatacattggaggccaca 3105
| ||||||||| | || ||||||||||||||||||
Sbjct: 303 ttagaggctcccttgcaagatacattggaggccaca 338
Score = 85.7 bits (43), Expect = 2e-014
Identities = 58/63 (92%)
Strand = Plus / Plus
Query: 3130 gctcacaccgatatgttctgatcatacattgatccatgatgctacatgttaatttgctta 3189
||||||||||||||||| ||| |||||||||| |||||| |||||||||||||||||| |
Sbjct: 366 gctcacaccgatatgttttgaacatacattgagccatgaagctacatgttaatttgctca 425
Query: 3190 aag 3192
|||
Sbjct: 426 aag 428
Score = 56.0 bits (28), Expect = 2e-005
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 3239 tgagaacaataatgtatgttaaggactaatta 3270
||||||||||||||||||| ||||||||||||
Sbjct: 490 tgagaacaataatgtatgtcaaggactaatta 521
>gb|AW671681.1|AW671681 LG1_349_E04.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 518
Score = 482 bits (243), Expect = e-133
Identities = 312/335 (93%)
Strand = Plus / Minus
Query: 2771 gccatacgagtgctgtagattggtgggcgctaggaattcttctatatgagatgttatatg 2830
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 518 gccatacaagtgctgtagattggtgggcgctaggaattcttctatatgagatgttgtatg 459
Query: 2831 gttatacacccttcagagggaaaacaagacaaaggacatttgctaatattctgcacaagg 2890
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 458 gttatacaccctttagagggaaaacaagacaaaggacctttgctaatattctgcacaagg 399
Query: 2891 atatcagatttcctgcgagcatacaggtgagcctggcggcaaggcagctgatataccggt 2950
|||||||||||||||||||||| ||||||||||| |||||||| || |||||||| |||
Sbjct: 398 atatcagatttcctgcgagcattcaggtgagccttgcggcaagacaattgatatacaggt 339
Query: 2951 tgctacaccgagaccctgcaaataggctaggttcctatgagggcgctatggagatcaaac 3010
|||||||||| |||||||||||||||||||||||||| ||||| ||||| ||||||||||
Sbjct: 338 tgctacaccgggaccctgcaaataggctaggttcctacgagggtgctattgagatcaaac 279
Query: 3011 aacaccccttctttcgtggcataaactgggctctagttcgtgccgccacgcccccagagc 3070
||||||||||||| |||||||||||||||||||||||||||||||| || || ||||||
Sbjct: 278 aacaccccttcttccgtggcataaactgggctctagttcgtgccgcaacacctccagagt 219
Query: 3071 tggaggctcccctccaggatacattggaggccaca 3105
| ||||||||| | || ||||||||||||||||||
Sbjct: 218 tagaggctcccttgcaagatacattggaggccaca 184
Score = 85.7 bits (43), Expect = 2e-014
Identities = 58/63 (92%)
Strand = Plus / Minus
Query: 3130 gctcacaccgatatgttctgatcatacattgatccatgatgctacatgttaatttgctta 3189
||||||||||||||||| ||| |||||||||| |||||| |||||||||||||||||| |
Sbjct: 156 gctcacaccgatatgttttgaacatacattgagccatgaagctacatgttaatttgctca 97
Query: 3190 aag 3192
|||
Sbjct: 96 aag 94
>gb|BM329963.1|BM329963 PIC1_45_E03.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 531
Score = 404 bits (204), Expect = e-110
Identities = 270/292 (92%)
Strand = Plus / Plus
Query: 2814 atatgagatgttatatggttatacacccttcagagggaaaacaagacaaaggacatttgc 2873
|||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct: 1 atatgagatgttgtatggttatacaccctttagagggaaaacaagacaaaggacctttgc 60
Query: 2874 taatattctgcacaaggatatcagatttcctgcgagcatacaggtgagcctggcggcaag 2933
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct: 61 taatattctgcacaaggatatcagatttcctgcgagcattcaggtgagccttgcggcaag 120
Query: 2934 gcagctgatataccggttgctacaccgagaccctgcaaataggctaggttcctatgaggg 2993
|| |||||||| ||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct: 121 acaattgatatacaggttgctacaccgggaccctgcaaataggctaggttcctacgaggg 180
Query: 2994 cgctatggagatcaaacaacaccccttctttcgtggcataaactgggctctagttcgtgc 3053
||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 181 tgctattgagatcaaacaacaccccttcttccgtggcataaactgggctctagttcgtgc 240
Query: 3054 cgccacgcccccagagctggaggctcccctccaggatacattggaggccaca 3105
||| || || |||||| | ||||||||| | || ||||||||||||||||||
Sbjct: 241 cgcaacacctccagagttagaggctcccttgcaagatacattggaggccaca 292
Score = 85.7 bits (43), Expect = 2e-014
Identities = 58/63 (92%)
Strand = Plus / Plus
Query: 3130 gctcacaccgatatgttctgatcatacattgatccatgatgctacatgttaatttgctta 3189
||||||||||||||||| ||| |||||||||| |||||| |||||||||||||||||| |
Sbjct: 320 gctcacaccgatatgttttgaacatacattgagccatgaagctacatgttaatttgctca 379
Query: 3190 aag 3192
|||
Sbjct: 380 aag 382
Score = 56.0 bits (28), Expect = 2e-005
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 3239 tgagaacaataatgtatgttaaggactaatta 3270
||||||||||||||||||| ||||||||||||
Sbjct: 444 tgagaacaataatgtatgtcaaggactaatta 475
>gb|BM323435.1|BM323435 PIC1_19_C05.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 553
Score = 353 bits (178), Expect = 7e-095
Identities = 214/226 (94%)
Strand = Plus / Plus
Query: 2197 agtgtccacttggtggagttgcttggcacaggtgaatactttgccatgaaagctatggat 2256
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 agtgtgcatttggtggagttgcttggcacaggtgaatactttgccatgaaagctatggat 387
Query: 2257 aaaagtgtcatgcttaaccgaaacaaggtccatagagctaccgctgaacgacaaatcctt 2316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 388 aaaagtgtcatgcttaaccgaaacaaggtccatagagctaccgctgaacgacaaatcttg 447
Query: 2317 gatatgttggaccacccattccttccgacattgtatgcatcatttcagacaaagacacat 2376
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 448 gatatgttggaccacccattccttccaacattgtatgcatcatttcagacaaagacacat 507
Query: 2377 atatgtcttattgttgactattgtgctggtggggaactctttatgc 2422
| ||||||||| ||||||| |||||| ||||||||||||||||
Sbjct: 508 gtgtgtcttattaccgactattatgctggcggggaactctttatgc 553
Score = 109 bits (55), Expect = 2e-021
Identities = 73/79 (92%)
Strand = Plus / Plus
Query: 2120 aggttcttgagaacggtgaaagcattgatttgaaacatttcagaccagtaaggcctttag 2179
||||||||||||| ||||||| |||||||||||||||||| ||||||||||| || ||||
Sbjct: 113 aggttcttgagaatggtgaaaacattgatttgaaacattttagaccagtaagacccttag 172
Query: 2180 gatctggtgatactggcag 2198
|||||||||| ||||||||
Sbjct: 173 gatctggtgacactggcag 191
>gb|CW049057.1|CW049057 104_288_10513803_114_30200 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10513803, DNA
sequence
Length = 673
Score = 305 bits (154), Expect = 1e-080
Identities = 196/210 (93%)
Strand = Plus / Plus
Query: 1450 cttattggtatgggacatgggaatgtagagaagaacattctaaaaccaagggaagatccc 1509
|||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 308 cttattggtatggggcatggaaatgtagagaagaacattctaaaaccaagggaagatccg 367
Query: 1510 ctacttgatagcgatgatgagagaccagatagcttcgatgacgatttcaggaagaaagaa 1569
||||||||||||||||||||||||||||| ||||| ||||| |||||||||| |||||||
Sbjct: 368 ctacttgatagcgatgatgagagaccagaaagctttgatgatgatttcaggaggaaagaa 427
Query: 1570 atgagaaagggcatagatttggctaccacacttgaacgtattgaaaagaattttgtcatc 1629
||||||| ||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 428 atgagaaggggtatagatttggctactacacttgaacgtattgaaaagaattttgtcatc 487
Query: 1630 accgacccgaggttaccagataatccaatt 1659
|| ||||| |||||||| || |||||||||
Sbjct: 488 actgacccaaggttaccggacaatccaatt 517
Score = 210 bits (106), Expect = 6e-052
Identities = 130/138 (94%)
Strand = Plus / Plus
Query: 1311 agttcccggcaagagaagctccgaaactggatcccgtcgtaactcacatagtggaatgag 1370
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |
Sbjct: 58 agttcccggcaagagaagctccgaaagtggatcccgtcgtaactcacggagtggaatgcg 117
Query: 1371 aaactctctacaaaaaatcagtgaggtgcctgaaggagggaataagaccaggaaatctgg 1430
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct: 118 aaactctctacaaaaaattagtgaagtgcctgaaggagggaataagaccaggaaatctgg 177
Query: 1431 tttgcgttcttttatggg 1448
|||||| || ||||||||
Sbjct: 178 tttgcgctcctttatggg 195
Score = 75.8 bits (38), Expect = 2e-011
Identities = 38/38 (100%)
Strand = Plus / Plus
Query: 1260 aagaaacaataccttaaaaaggaaatcacaggaatcag 1297
||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aagaaacaataccttaaaaaggaaatcacaggaatcag 38
Score = 52.0 bits (26), Expect = 3e-004
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 1660 atatttgcatcggatagctttttgcgtttgacagagta 1697
||||||||||| ||||||||||| || |||||||||||
Sbjct: 636 atatttgcatcagatagctttttacgattgacagagta 673
>gb|CW441451.1|CW441451 fsbb001f160j18k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f160j18, DNA
sequence
Length = 677
Score = 204 bits (103), Expect = 4e-050
Identities = 112/115 (97%)
Strand = Plus / Plus
Query: 1726 tgcaggtttcttcaaggacctgaaactgaccgtgggacagtaaagaagataagagatgcc 1785
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 22 tgcaggtttcttcaaggacctgaaactgaccgtgggacagtaaagaagataagggatgcc 81
Query: 1786 atagataaccaaacagaagttactgttcagctgataaattatacaaagagcggta 1840
||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct: 82 atagataaccaaacagaagttaccgttcagctgataaactatacaaagagcggta 136
Score = 139 bits (70), Expect = 2e-030
Identities = 79/82 (96%)
Strand = Plus / Plus
Query: 1886 agggtgatgttcaatacttcattggggttcaattggatggaactgagcgtgttcgagagg 1945
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 agggtgaagttcaatacttcattggggttcaattggatggaactgagcgtgttcgagaca 536
Query: 1946 ctgctgcaaaagatggtgccat 1967
||||||||||||||||||||||
Sbjct: 537 ctgctgcaaaagatggtgccat 558
Score = 87.7 bits (44), Expect = 6e-015
Identities = 50/52 (96%)
Strand = Plus / Plus
Query: 1837 ggtaagaaattctggaacctctttcacttgcagcctatgcgtgatcagaagg 1888
||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 333 ggtaaaaaattctggaacctctttcacttgcaacctatgcgtgatcagaagg 384
>gb|CW462112.1|CW462112 fsbb001f210b16f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f210b16, DNA
sequence
Length = 665
Score = 196 bits (99), Expect = 9e-048
Identities = 108/111 (97%)
Strand = Plus / Minus
Query: 2517 aggtataatctacagagacttaaagccagagaacattttacttcatagagatgggcacat 2576
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 172 aggtataatctacagagacttaaagccagagaacattttacttcaaagagatgggcacat 113
Query: 2577 ttcattgacagactttgatttgtcttgcttgacatcctgccgaccacaagt 2627
||| ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 112 ttccttgacagactttgatttgtcttgcttgacatcctgccaaccacaagt 62
Score = 109 bits (55), Expect = 2e-021
Identities = 55/55 (100%)
Strand = Plus / Minus
Query: 2467 aggttctatgctgcagaagtggtcacagcacttgaatacctacattgccaaggta 2521
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 aggttctatgctgcagaagtggtcacagcacttgaatacctacattgccaaggta 479
>gb|CW441450.1|CW441450 fsbb001f160j18f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f160j18, DNA
sequence
Length = 714
Score = 153 bits (77), Expect = 1e-034
Identities = 89/93 (95%)
Strand = Plus / Minus
Query: 2031 gagacctgaggatctatgggctaatcactcaaaaccagtcttgccaaagccacatatgaa 2090
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 527 gagaccagaggatctatgggctaatcattcaaaaccagtcttgccaaagccacatatgaa 468
Query: 2091 ggatactgcatcgtggagagccatccaaaaggt 2123
|||||| ||||| ||||||||||||||||||||
Sbjct: 467 ggataccgcatcatggagagccatccaaaaggt 435
Score = 109 bits (55), Expect = 2e-021
Identities = 73/79 (92%)
Strand = Plus / Minus
Query: 2120 aggttcttgagaacggtgaaagcattgatttgaaacatttcagaccagtaaggcctttag 2179
||||||||||||| ||||||| |||||||||||||||||| ||||||||||| || ||||
Sbjct: 219 aggttcttgagaatggtgaaaacattgatttgaaacattttagaccagtaagacccttag 160
Query: 2180 gatctggtgatactggcag 2198
|||||||||| ||||||||
Sbjct: 159 gatctggtgacactggcag 141
Score = 63.9 bits (32), Expect = 9e-008
Identities = 52/56 (92%), Gaps = 2/56 (3%)
Strand = Plus / Minus
Query: 1978 aaaactgcagacaatattgatga-ggctgcaaaggagctt-ccggatgctaatttg 2031
||||||||||| ||||||||||| |||||||||||| ||| |||||||||||||||
Sbjct: 667 aaaactgcagataatattgatgagggctgcaaaggaacttcccggatgctaatttg 612
>gb|CW462113.1|CW462113 fsbb001f210b16k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f210b16, DNA
sequence
Length = 610
Score = 151 bits (76), Expect = 5e-034
Identities = 88/92 (95%)
Strand = Plus / Plus
Query: 2031 gagacctgaggatctatgggctaatcactcaaaaccagtcttgccaaagccacatatgaa 2090
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 100 gagaccagaggatctatgggctaatcattcaaaaccagtcttgccaaagccacatatgaa 159
Query: 2091 ggatactgcatcgtggagagccatccaaaagg 2122
|||||| ||||| |||||||||||||||||||
Sbjct: 160 ggataccgcatcatggagagccatccaaaagg 191
Score = 85.7 bits (43), Expect = 2e-014
Identities = 67/75 (89%)
Strand = Plus / Plus
Query: 2124 tcttgagaacggtgaaagcattgatttgaaacatttcagaccagtaaggcctttaggatc 2183
||||||||| || | || |||||||||||||||||| ||||||||||| || ||||||||
Sbjct: 412 tcttgagaatgggggaaacattgatttgaaacattttagaccagtaagacccttaggatc 471
Query: 2184 tggtgatactggcag 2198
|||||| ||||||||
Sbjct: 472 tggtgacactggcag 486
>gb|CD212899.1|CD212899 HS1_17_E04.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA clone
HS1_17_E04_A012 3', mRNA sequence
Length = 306
Score = 109 bits (55), Expect = 2e-021
Identities = 97/111 (87%)
Strand = Plus / Plus
Query: 2995 gctatggagatcaaacaacaccccttctttcgtggcataaactgggctctagttcgtgcc 3054
||||| ||||||||||| |||||||| || |||||||||||||||||| |||||||||||
Sbjct: 4 gctattgagatcaaacaccacccctttttccgtggcataaactgggctttagttcgtgcc 63
Query: 3055 gccacgcccccagagctggaggctcccctccaggatacattggaggccaca 3105
|| || || |||||| | ||||||||| | || ||| ||||||||||||||
Sbjct: 64 gcaacccctccagagttagaggctcccttgcaagatccattggaggccaca 114
Score = 77.8 bits (39), Expect = 6e-012
Identities = 57/63 (90%)
Strand = Plus / Plus
Query: 3130 gctcacaccgatatgttctgatcatacattgatccatgatgctacatgttaatttgctta 3189
||||||||||||||||| ||| |||||||||| || ||| |||||||||||||||||| |
Sbjct: 142 gctcacaccgatatgttttgaacatacattgagccgtgaagctacatgttaatttgctca 201
Query: 3190 aag 3192
|||
Sbjct: 202 aag 204
Score = 42.1 bits (21), Expect = 0.33
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 3246 aataatgtatgttaaggactaatta 3270
|||||||||||| ||||||||||||
Sbjct: 274 aataatgtatgtcaaggactaatta 298
>gb|CW049058.1|CW049058 104_288_10513803_115_30199 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10513803, DNA
sequence
Length = 352
Score = 105 bits (53), Expect = 3e-020
Identities = 68/73 (93%)
Strand = Plus / Minus
Query: 1660 atatttgcatcggatagctttttgcgtttgacagagtattgccgcgaagaaatattggga 1719
||||||||||| ||||||||||| || |||||||||||||| ||||||||||||||||||
Sbjct: 176 atatttgcatcagatagctttttacgattgacagagtattgtcgcgaagaaatattggga 117
Query: 1720 agaaactgcaggt 1732
||||| |||||||
Sbjct: 116 agaaattgcaggt 104
Score = 83.8 bits (42), Expect = 1e-013
Identities = 54/58 (93%)
Strand = Plus / Minus
Query: 1602 tgaacgtattgaaaagaattttgtcatcaccgacccgaggttaccagataatccaatt 1659
|||||||||||||||||||||||||||||| ||||| |||||||| || |||||||||
Sbjct: 352 tgaacgtattgaaaagaattttgtcatcactgacccaaggttaccggacaatccaatt 295
>gb|CW358121.1|CW358121 fsbb001f025b15f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f025b15, DNA
sequence
Length = 690
Score = 73.8 bits (37), Expect = 9e-011
Identities = 103/125 (82%)
Strand = Plus / Minus
Query: 790 cagcagaccttcgtcgtgtccgatgccacccgccctgaccaccccatcctctacgccagc 849
|||||||| ||||| || ||||| ||||| ||||| ||| ||||||| |||||||||||
Sbjct: 568 cagcagacgttcgtggtctccgacgccacgcgcccggactgccccatcatctacgccagc 509
Query: 850 gctggattcttcaacatgacgggctactcctccaatgaggtcgtcggaaggaactgccgc 909
|| || |||| || |||||| |||||| || |||| || || ||||| | |||||||||
Sbjct: 508 gccggcttctacaccatgaccggctacgccgccaaggacgtggtcggccgcaactgccgc 449
Query: 910 ttcct 914
|||||
Sbjct: 448 ttcct 444
>gb|BM323503.1|BM323503 PIC1_20_A11.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 611
Score = 73.8 bits (37), Expect = 9e-011
Identities = 82/97 (84%)
Strand = Plus / Plus
Query: 1831 aagagcggtaagaaattctggaacctctttcacttgcagcctatgcgtgatcagaagggt 1890
||||| || ||||| ||||||||| | || ||| ||||||| ||||| || ||||||||
Sbjct: 281 aagagtgggaagaagttctggaacttgttccacctgcagccaatgcgagaccagaaggga 340
Query: 1891 gatgttcaatacttcattggggttcaattggatggaa 1927
|| |||| ||||||||||| ||||||||||||||||
Sbjct: 341 gagcttcagtacttcattggtgttcaattggatggaa 377
>gb|BM326196.1|BM326196 PIC1_72_B08.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 559
Score = 73.8 bits (37), Expect = 9e-011
Identities = 82/97 (84%)
Strand = Plus / Plus
Query: 1831 aagagcggtaagaaattctggaacctctttcacttgcagcctatgcgtgatcagaagggt 1890
||||| || ||||| ||||||||| | || ||| ||||||| ||||| || ||||||||
Sbjct: 434 aagagtgggaagaagttctggaacttgttccacctgcagccaatgcgagaccagaaggga 493
Query: 1891 gatgttcaatacttcattggggttcaattggatggaa 1927
|| |||| ||||||||||| ||||||||||||||||
Sbjct: 494 gagcttcagtacttcattggtgttcaattggatggaa 530
>gb|BM327936.1|BM327936 PIC1_19_C05.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 129
Score = 56.0 bits (28), Expect = 2e-005
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 3239 tgagaacaataatgtatgttaaggactaatta 3270
||||||||||||||||||| ||||||||||||
Sbjct: 75 tgagaacaataatgtatgtcaaggactaatta 106
>gb|BZ340259.1|BZ340259 ic37f12.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone ic37f12 5', DNA sequence
Length = 667
Score = 54.0 bits (27), Expect = 9e-005
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 297 aggaggaggagaaggaggagcagcagcagca 327
||||||||||| |||||||||||||||||||
Sbjct: 653 aggaggaggaggaggaggagcagcagcagca 623
Score = 48.1 bits (24), Expect = 0.005
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 298 ggaggaggagaaggaggagcagcagcagcagc 329
|||||||||| |||||||| ||||||||||||
Sbjct: 655 ggaggaggaggaggaggaggagcagcagcagc 624
>gb|CW310946.1|CW310946 104_800_11469977_148_35757_075 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11469977, DNA
sequence
Length = 713
Score = 54.0 bits (27), Expect = 9e-005
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 297 aggaggaggagaaggaggagcagcagcagca 327
||||||||||| |||||||||||||||||||
Sbjct: 46 aggaggaggaggaggaggagcagcagcagca 76
Score = 50.1 bits (25), Expect = 0.001
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 297 aggaggaggagaaggaggagcagcagcagcagc 329
||||||||||| |||||||| ||||||||||||
Sbjct: 43 aggaggaggaggaggaggaggagcagcagcagc 75
>gb|CL163517.1|CL163517 104_356_10807200_116_31811_336 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10807200, DNA
sequence
Length = 689
Score = 50.1 bits (25), Expect = 0.001
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 70 gtgtctgtatcgatgtgtccgtattttctccatctcgtctgcata 114
||||||| ||||||||||||||| ||| ||||| ||||||||||
Sbjct: 456 gtgtctggatcgatgtgtccgtaattttcccatcccgtctgcata 412
>gb|CW186644.1|CW186644 104_604_11166676_116_36708_004 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11166676, DNA
sequence
Length = 649
Score = 50.1 bits (25), Expect = 0.001
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 70 gtgtctgtatcgatgtgtccgtattttctccatctcgtctgcata 114
||||||| ||||||||||||||| ||| ||||| ||||||||||
Sbjct: 247 gtgtctggatcgatgtgtccgtaattttcccatcccgtctgcata 203
>gb|CW786105.1|CW786105 SP__Ba0019B09.f SP__Ba Sorghum propinquum genomic clone
SP__Ba0019B09 5', DNA sequence
Length = 757
Score = 50.1 bits (25), Expect = 0.001
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 297 aggaggaggagaaggaggagcagcagcag 325
||||||||||| |||||||||||||||||
Sbjct: 523 aggaggaggaggaggaggagcagcagcag 495
Score = 48.1 bits (24), Expect = 0.005
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 297 aggaggaggagaaggaggagcagcagcagcag 328
||||||| ||| ||||||||||||||||||||
Sbjct: 556 aggaggacgaggaggaggagcagcagcagcag 525
Score = 48.1 bits (24), Expect = 0.005
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 297 aggaggaggagaaggaggagcagcagcagcag 328
||||||||||| |||||||| |||||||||||
Sbjct: 526 aggaggaggaggaggaggaggagcagcagcag 495
>gb|CD205196.1|CD205196 HS1_12_D05.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_12_D05_A012 5', mRNA sequence
Length = 699
Score = 50.1 bits (25), Expect = 0.001
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 70 gtgtctgtatcgatgtgtccgtattttctccatctcgtctgcata 114
||||||| ||||||||||||||| ||| ||||| ||||||||||
Sbjct: 81 gtgtctggatcgatgtgtccgtaattttcccatcccgtctgcata 125
>gb|CD462285.1|CD462285 SA1_40_B09.g1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_40_B09_A002 5', mRNA sequence
Length = 820
Score = 50.1 bits (25), Expect = 0.001
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 70 gtgtctgtatcgatgtgtccgtattttctccatctcgtctgcata 114
||||||| ||||||||||||||| ||| ||||| ||||||||||
Sbjct: 81 gtgtctggatcgatgtgtccgtaattttcccatcccgtctgcata 125
Score = 48.1 bits (24), Expect = 0.005
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 434 cgcgtgattcccgagggtccctcgaagtcttcaatccagacgcc 477
||||||| || || || ||||| |||||||||||||||||||||
Sbjct: 713 cgcgtgactctcgtggatcccttgaagtcttcaatccagacgcc 756
>gb|BG159398.1|BG159398 OV2_7_D02.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA sequence
Length = 489
Score = 48.1 bits (24), Expect = 0.005
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 300 aggaggagaaggaggagcagcagcagcagcca 331
|||||||| ||||| |||||||||||||||||
Sbjct: 235 aggaggaggaggagcagcagcagcagcagcca 266
>gb|CD236213.1|CD236213 SS1_32_H04.g1_A012 Salt-stressed seedlings Sorghum bicolor cDNA clone
SS1_32_H04_A012 5', mRNA sequence
Length = 581
Score = 48.1 bits (24), Expect = 0.005
Identities = 60/72 (83%)
Strand = Plus / Plus
Query: 2184 tggtgatactggcagtgtccacttggtggagttgcttggcacaggtgaatactttgccat 2243
|||||| ||||||||||| || ||||||||||||| |||| ||||||| ||||| ||
Sbjct: 235 tggtgacactggcagtgtacatttggtggagttgcaaggcagtggtgaattatttgcaat 294
Query: 2244 gaaagctatgga 2255
||| || |||||
Sbjct: 295 gaaggcaatgga 306
>gb|CL163516.1|CL163516 104_356_10807200_114_31810_336 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10807200, DNA
sequence
Length = 685
Score = 46.1 bits (23), Expect = 0.021
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 72 gtctgtatcgatgtgtccgtattttctccatctcgtctgcata 114
||||| ||||||||||||||| ||| ||||| ||||||||||
Sbjct: 629 gtctggatcgatgtgtccgtaattttcccatcccgtctgcata 671
>gb|CW028967.1|CW028967 104_256_10499406_116_30400 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10499406, DNA
sequence
Length = 602
Score = 46.1 bits (23), Expect = 0.021
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 301 ggaggagaaggaggagcagcagcagca 327
||||||| |||||||||||||||||||
Sbjct: 602 ggaggaggaggaggagcagcagcagca 576
>gb|CW131679.1|CW131679 104_514_11115800_148_34789_020 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11115800, DNA
sequence
Length = 629
Score = 46.1 bits (23), Expect = 0.021
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 303 aggagaaggaggagcagcagcagcagc 329
||||||||||||||||||| |||||||
Sbjct: 519 aggagaaggaggagcagcaccagcagc 493
>gb|CD203755.1|CD203755 HS1_1_E05.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA clone
HS1_1_E05_A012 5', mRNA sequence
Length = 645
Score = 46.1 bits (23), Expect = 0.021
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 309 aggaggagcagcagcagcagcca 331
|||||||||||||||||||||||
Sbjct: 36 aggaggagcagcagcagcagcca 58
>gb|CD207465.1|CD207465 HS1_65_A07.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_65_A07_A012 5', mRNA sequence
Length = 580
Score = 46.1 bits (23), Expect = 0.021
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 309 aggaggagcagcagcagcagcca 331
|||||||||||||||||||||||
Sbjct: 33 aggaggagcagcagcagcagcca 55
>gb|CD211922.1|CD211922 HS1_67_C08.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_67_C08_A012 5', mRNA sequence
Length = 577
Score = 46.1 bits (23), Expect = 0.021
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 309 aggaggagcagcagcagcagcca 331
|||||||||||||||||||||||
Sbjct: 55 aggaggagcagcagcagcagcca 77
>gb|CD212111.1|CD212111 HS1_68_E03.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_68_E03_A012 5', mRNA sequence
Length = 546
Score = 46.1 bits (23), Expect = 0.021
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 309 aggaggagcagcagcagcagcca 331
|||||||||||||||||||||||
Sbjct: 34 aggaggagcagcagcagcagcca 56
>gb|CD230437.1|CD230437 SS1_43_D10.g1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_43_D10_A012 5', mRNA sequence
Length = 412
Score = 46.1 bits (23), Expect = 0.021
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 309 aggaggagcagcagcagcagcca 331
|||||||||||||||||||||||
Sbjct: 19 aggaggagcagcagcagcagcca 41
>gb|CD232632.1|CD232632 SS1_46_E08.g1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_46_E08_A012 5', mRNA sequence
Length = 577
Score = 46.1 bits (23), Expect = 0.021
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 309 aggaggagcagcagcagcagcca 331
|||||||||||||||||||||||
Sbjct: 36 aggaggagcagcagcagcagcca 58
>gb|CD233268.1|CD233268 SS1_12_D08.g1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_12_D08_A012 5', mRNA sequence
Length = 615
Score = 46.1 bits (23), Expect = 0.021
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 309 aggaggagcagcagcagcagcca 331
|||||||||||||||||||||||
Sbjct: 34 aggaggagcagcagcagcagcca 56
>gb|CD233975.1|CD233975 SS1_5_E03.g1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_5_E03_A012 5', mRNA sequence
Length = 662
Score = 46.1 bits (23), Expect = 0.021
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 309 aggaggagcagcagcagcagcca 331
|||||||||||||||||||||||
Sbjct: 50 aggaggagcagcagcagcagcca 72
>emb|AX146656.1| Sequence 7 from Patent WO0134818
Length = 6827
Score = 46.1 bits (23), Expect = 0.021
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 303 aggagaaggaggagcagcagcagcagc 329
||||||||||||||||||| |||||||
Sbjct: 283 aggagaaggaggagcagcaccagcagc 257
>emb|AX146657.1| Sequence 8 from Patent WO0134818
Length = 4213
Score = 46.1 bits (23), Expect = 0.021
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 303 aggagaaggaggagcagcagcagcagc 329
||||||||||||||||||| |||||||
Sbjct: 261 aggagaaggaggagcagcaccagcagc 235
>gb|AY372819.1| Sorghum bicolor P-glycoprotein 1 (PGP1) gene, PGP1-Dw3-T allele,
complete cds
Length = 6827
Score = 46.1 bits (23), Expect = 0.021
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 303 aggagaaggaggagcagcagcagcagc 329
||||||||||||||||||| |||||||
Sbjct: 283 aggagaaggaggagcagcaccagcagc 257
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,103,957
Number of Sequences: 832831
Number of extensions: 1103957
Number of successful extensions: 377143
Number of sequences better than 0.5: 166
Number of HSP's better than 0.5 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 376446
Number of HSP's gapped (non-prelim): 619
length of query: 3330
length of database: 491,359,669
effective HSP length: 21
effective length of query: 3309
effective length of database: 473,870,218
effective search space: 1568036551362
effective search space used: 1568036551362
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)