BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3588987.2.1
(487 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CD206192.1|CD206192 HS1_21_F03.b1_A012 Heat-shocked seed... 563 e-159
gb|CD225929.1|CD225929 CCC1_42_E11.b1_A007 Callus culture/c... 563 e-159
gb|CF073438.1|CF073438 FE1_10_B08.b1_A002 Iron-deficient se... 563 e-159
gb|CW040788.1|CW040788 104_274_10506292_114_30470 Sorghum m... 254 7e-066
gb|CW063071.1|CW063071 104_308_10521699_1_30092 Sorghum met... 204 5e-051
gb|AW746098.1|AW746098 WS1_39_H03.b1_A002 Water-stressed 1 ... 176 1e-042
gb|AW747621.1|AW747621 WS1_74_C09.g1_A002 Water-stressed 1 ... 174 5e-042
gb|AW923920.1|AW923920 WS1_30_B03.b1_A002 Water-stressed 1 ... 174 5e-042
gb|AW925011.1|AW925011 WS1_74_C09.b1_A002 Water-stressed 1 ... 174 5e-042
gb|BE598987.1|BE598987 PI1_86_A03.g1_A002 Pathogen induced ... 174 5e-042
gb|BG048518.1|BG048518 OV1_14_E09.g2_A002 Ovary 1 (OV1) Sor... 174 5e-042
gb|BG240707.1|BG240707 OV1_37_C06.g1_A002 Ovary 1 (OV1) Sor... 174 5e-042
gb|BG947049.1|BG947049 IP1_2_H09.g1_A002 Immature pannicle ... 174 5e-042
gb|CD424860.1|CD424860 SA1_9_E01.b1_A002 Salicylic acid-tre... 174 5e-042
gb|AW679708.1|AW679708 WS1_30_B03.g1_A002 Water-stressed 1 ... 168 3e-040
gb|BG052764.1|BG052764 RHIZ2_14_E10.g1_A003 Rhizome2 (RHIZ2... 167 1e-039
gb|AW746132.1|AW746132 WS1_39_H03.g1_A002 Water-stressed 1 ... 161 7e-038
gb|BE364598.2|BE364598 PI1_15_B06.g1_A002 Pathogen induced ... 161 7e-038
gb|BE364817.2|BE364817 PI1_16_D01.g1_A002 Pathogen induced ... 161 7e-038
gb|CB929152.1|CB929152 ABA1_40_A09.b1_A012 Abscisic acid-tr... 153 2e-035
gb|BG273158.1|BG273158 OV2_27_E09.g1_A002 Ovary 2 (OV2) Sor... 145 4e-033
gb|BZ625902.1|BZ625902 ih41e06.g1 WGS-SbicolorF (DH5a methy... 125 4e-027
gb|CL159623.1|CL159623 104_349_10804388_114_31381_212 Sorgh... 125 4e-027
gb|CL159624.1|CL159624 104_349_10804388_116_31382_212 Sorgh... 125 4e-027
gb|CW063072.1|CW063072 104_308_10521699_5_30097 Sorghum met... 125 4e-027
gb|CW196206.1|CW196206 104_620_11181046_116_36812_093 Sorgh... 125 4e-027
gb|CW204053.1|CW204053 104_631_11186336_116_37095_018 Sorgh... 125 4e-027
gb|CW385665.1|CW385665 fsbb001f069d17k0 Sorghum methylation... 109 2e-022
gb|BG053524.1|BG053524 RHIZ2_10_C06.g1_A003 Rhizome2 (RHIZ2... 105 4e-021
gb|AW679148.1|AW679148 WS1_22_D09.g1_A002 Water-stressed 1 ... 90 2e-016
gb|CW427101.1|CW427101 fsbb001f138o15k0 Sorghum methylation... 84 1e-014
gb|CW474171.1|CW474171 fsbb001f229o04f0 Sorghum methylation... 84 1e-014
gb|BG947050.1|BG947050 IP1_2_H10.g1_A002 Immature pannicle ... 70 2e-010
gb|BI099220.1|BI099220 IP1_39_H05.g1_A002 Immature pannicle... 66 3e-009
gb|AW679016.1|AW679016 WS1_22_D09.b1_A002 Water-stressed 1 ... 60 2e-007
gb|AW565411.1|AW565411 LG1_343_H08.g1_A002 Light Grown 1 (L... 58 8e-007
gb|CW336658.1|CW336658 104_836_11483713_116_36110_013 Sorgh... 44 0.012
gb|CW474172.1|CW474172 fsbb001f229o04k0 Sorghum methylation... 42 0.046
>gb|CD206192.1|CD206192 HS1_21_F03.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_21_F03_A012 3', mRNA sequence
Length = 623
Score = 563 bits (284), Expect = e-159
Identities = 376/406 (92%), Gaps = 12/406 (2%)
Strand = Plus / Minus
Query: 94 ttcagtttccaaaatgcgaaacaatgat---caagttcacagcatttccagcacaggtcc 150
|||||||||||||||||||||||||||| || ||||| |||||||||||||||| |||
Sbjct: 575 ttcagtttccaaaatgcgaaacaatgatgatcaggttcatagcatttccagcacagatcc 516
Query: 151 cagat---aacccggacattccagccaccgtctacttc------atctgaactatccctg 201
||| | |||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct: 515 cagttctgaacccggacattccagccactgtctacttctacttcatctgaactatccctg 456
Query: 202 cgctgacgagcttctggatcttctgcatcactccggggttcttgaggtgcgcctgcgcag 261
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct: 455 cgctgacgagcttctggatcttttgcatcactccggggttcttgaggtgcgcctgggcag 396
Query: 262 cccgagggttctcctgcagatccgtcaaaacctgctgcatgatcggatcagtcaggatgt 321
|||||||||||||||||| ||| |||||||||||| |||||||||||||||| |||||||
Sbjct: 395 cccgagggttctcctgcaaatcagtcaaaacctgccgcatgatcggatcagtaaggatgt 336
Query: 322 tctggatctcagggtcttgcatggctttgttctgtctctctttcagttcctcctcactga 381
||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 335 tctggatttcagggtcctgcatggctttgttctgtctctctttcagttcctcctcgctga 276
Query: 382 gttcgcctctgctcgccttggtgatctgttcaacacacctccttacaccatcaagtaact 441
||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 275 gttcgcccctgctcgccttgttgatctgttcaacacacctccttacaccatcaagtaact 216
Query: 442 cctggtttttcgggncatgctttaggccagcttgataagtttccag 487
|||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct: 215 cctggtttttcgggtcatgctttaagccagcttgataagtttccag 170
Score = 44.1 bits (22), Expect = 0.012
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 47 atatggatcattaacagccatgacca 72
|||||||| |||||||||||||||||
Sbjct: 611 atatggataattaacagccatgacca 586
>gb|CD225929.1|CD225929 CCC1_42_E11.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_42_E11_A007 3', mRNA sequence
Length = 642
Score = 563 bits (284), Expect = e-159
Identities = 376/406 (92%), Gaps = 12/406 (2%)
Strand = Plus / Minus
Query: 94 ttcagtttccaaaatgcgaaacaatgat---caagttcacagcatttccagcacaggtcc 150
|||||||||||||||||||||||||||| || ||||| |||||||||||||||| |||
Sbjct: 603 ttcagtttccaaaatgcgaaacaatgatgatcaggttcatagcatttccagcacagatcc 544
Query: 151 cagat---aacccggacattccagccaccgtctacttc------atctgaactatccctg 201
||| | |||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct: 543 cagttctgaacccggacattccagccactgtctacttctacttcatctgaactatccctg 484
Query: 202 cgctgacgagcttctggatcttctgcatcactccggggttcttgaggtgcgcctgcgcag 261
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct: 483 cgctgacgagcttctggatcttttgcatcactccggggttcttgaggtgcgcctgggcag 424
Query: 262 cccgagggttctcctgcagatccgtcaaaacctgctgcatgatcggatcagtcaggatgt 321
|||||||||||||||||| ||| |||||||||||| |||||||||||||||| |||||||
Sbjct: 423 cccgagggttctcctgcaaatcagtcaaaacctgccgcatgatcggatcagtaaggatgt 364
Query: 322 tctggatctcagggtcttgcatggctttgttctgtctctctttcagttcctcctcactga 381
||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 363 tctggatttcagggtcctgcatggctttgttctgtctctctttcagttcctcctcgctga 304
Query: 382 gttcgcctctgctcgccttggtgatctgttcaacacacctccttacaccatcaagtaact 441
||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 303 gttcgcccctgctcgccttgttgatctgttcaacacacctccttacaccatcaagtaact 244
Query: 442 cctggtttttcgggncatgctttaggccagcttgataagtttccag 487
|||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct: 243 cctggtttttcgggtcatgctttaagccagcttgataagtttccag 198
Score = 44.1 bits (22), Expect = 0.012
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 47 atatggatcattaacagccatgacca 72
|||||||| |||||||||||||||||
Sbjct: 639 atatggataattaacagccatgacca 614
>gb|CF073438.1|CF073438 FE1_10_B08.b1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
clone FE1_10_B08_A002 3', mRNA sequence
Length = 633
Score = 563 bits (284), Expect = e-159
Identities = 376/406 (92%), Gaps = 12/406 (2%)
Strand = Plus / Minus
Query: 94 ttcagtttccaaaatgcgaaacaatgat---caagttcacagcatttccagcacaggtcc 150
|||||||||||||||||||||||||||| || ||||| |||||||||||||||| |||
Sbjct: 587 ttcagtttccaaaatgcgaaacaatgatgatcaggttcatagcatttccagcacagatcc 528
Query: 151 cagat---aacccggacattccagccaccgtctacttc------atctgaactatccctg 201
||| | |||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct: 527 cagttctgaacccggacattccagccactgtctacttctacttcatctgaactatccctg 468
Query: 202 cgctgacgagcttctggatcttctgcatcactccggggttcttgaggtgcgcctgcgcag 261
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct: 467 cgctgacgagcttctggatcttttgcatcactccggggttcttgaggtgcgcctgggcag 408
Query: 262 cccgagggttctcctgcagatccgtcaaaacctgctgcatgatcggatcagtcaggatgt 321
|||||||||||||||||| ||| |||||||||||| |||||||||||||||| |||||||
Sbjct: 407 cccgagggttctcctgcaaatcagtcaaaacctgccgcatgatcggatcagtaaggatgt 348
Query: 322 tctggatctcagggtcttgcatggctttgttctgtctctctttcagttcctcctcactga 381
||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 347 tctggatttcagggtcctgcatggctttgttctgtctctctttcagttcctcctcgctga 288
Query: 382 gttcgcctctgctcgccttggtgatctgttcaacacacctccttacaccatcaagtaact 441
||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 287 gttcgcccctgctcgccttgttgatctgttcaacacacctccttacaccatcaagtaact 228
Query: 442 cctggtttttcgggncatgctttaggccagcttgataagtttccag 487
|||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct: 227 cctggtttttcgggtcatgctttaagccagcttgataagtttccag 182
Score = 44.1 bits (22), Expect = 0.012
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 47 atatggatcattaacagccatgacca 72
|||||||| |||||||||||||||||
Sbjct: 623 atatggataattaacagccatgacca 598
>gb|CW040788.1|CW040788 104_274_10506292_114_30470 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10506292, DNA
sequence
Length = 717
Score = 254 bits (128), Expect = 7e-066
Identities = 194/215 (90%), Gaps = 12/215 (5%)
Strand = Plus / Minus
Query: 94 ttcagtttccaaaatgcgaaacaatgat---caagttcacagcatttccagcacaggtcc 150
|||||||||||||||||||||||||||| || ||||| |||||||||||||||| |||
Sbjct: 513 ttcagtttccaaaatgcgaaacaatgatgatcaggttcatagcatttccagcacagatcc 454
Query: 151 cagat---aacccggacattccagccaccgtctacttc------atctgaactatccctg 201
||| | |||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct: 453 cagttctgaacccggacattccagccactgtctacttctacttcatctgaactatccctg 394
Query: 202 cgctgacgagcttctggatcttctgcatcactccggggttcttgaggtgcgcctgcgcag 261
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct: 393 cgctgacgagcttctggatcttttgcatcactccggggttcttgaggtgcgcctgggcag 334
Query: 262 cccgagggttctcctgcagatccgtcaaaacctgc 296
|||||||||||||||||| ||| ||||||||||||
Sbjct: 333 cccgagggttctcctgcaaatcagtcaaaacctgc 299
Score = 95.6 bits (48), Expect = 4e-018
Identities = 60/64 (93%)
Strand = Plus / Minus
Query: 291 acctgctgcatgatcggatcagtcaggatgttctggatctcagggtcttgcatggctttg 350
|||||| |||||||||||||||| |||||||||||||| |||||||| ||||||||||||
Sbjct: 216 acctgccgcatgatcggatcagtaaggatgttctggatttcagggtcctgcatggctttg 157
Query: 351 ttct 354
||||
Sbjct: 156 ttct 153
Score = 65.9 bits (33), Expect = 3e-009
Identities = 39/41 (95%)
Strand = Plus / Minus
Query: 353 ctgtctctctttcagttcctcctcactgagttcgcctctgc 393
|||||||||||||||||||||||| ||||||||||| ||||
Sbjct: 41 ctgtctctctttcagttcctcctcgctgagttcgcccctgc 1
Score = 44.1 bits (22), Expect = 0.012
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 47 atatggatcattaacagccatgacca 72
|||||||| |||||||||||||||||
Sbjct: 549 atatggataattaacagccatgacca 524
>gb|CW063071.1|CW063071 104_308_10521699_1_30092 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10521699, DNA
sequence
Length = 638
Score = 204 bits (103), Expect = 5e-051
Identities = 115/119 (96%)
Strand = Plus / Plus
Query: 178 tctacttcatctgaactatccctgcgctgacgagcttctggatcttctgcatcactccgg 237
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 5 tctacttcatctgaactatccctgcgctgacgagcttctggatcttttgcatcactccgg 64
Query: 238 ggttcttgaggtgcgcctgcgcagcccgagggttctcctgcagatccgtcaaaacctgc 296
||||||||||||||||||| |||||||||||||||||||||| ||| ||||||||||||
Sbjct: 65 ggttcttgaggtgcgcctgggcagcccgagggttctcctgcaaatcagtcaaaacctgc 123
Score = 125 bits (63), Expect = 4e-027
Identities = 68/70 (97%)
Strand = Plus / Plus
Query: 418 acctccttacaccatcaagtaactcctggtttttcgggncatgctttaggccagcttgat 477
|||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct: 535 acctccttacaccatcaagtaactcctggtttttcgggtcatgctttaagccagcttgat 594
Query: 478 aagtttccag 487
||||||||||
Sbjct: 595 aagtttccag 604
Score = 113 bits (57), Expect = 2e-023
Identities = 66/69 (95%)
Strand = Plus / Plus
Query: 353 ctgtctctctttcagttcctcctcactgagttcgcctctgctcgccttggtgatctgttc 412
|||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||
Sbjct: 381 ctgtctctctttcagttcctcctcgctgagttcgcccctgctcgccttgttgatctgttc 440
Query: 413 aacacacct 421
|||||||||
Sbjct: 441 aacacacct 449
Score = 95.6 bits (48), Expect = 4e-018
Identities = 60/64 (93%)
Strand = Plus / Plus
Query: 291 acctgctgcatgatcggatcagtcaggatgttctggatctcagggtcttgcatggctttg 350
|||||| |||||||||||||||| |||||||||||||| |||||||| ||||||||||||
Sbjct: 206 acctgccgcatgatcggatcagtaaggatgttctggatttcagggtcctgcatggctttg 265
Query: 351 ttct 354
||||
Sbjct: 266 ttct 269
>gb|AW746098.1|AW746098 WS1_39_H03.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 508
Score = 176 bits (89), Expect = 1e-042
Identities = 249/303 (82%)
Strand = Plus / Minus
Query: 184 tcatctgaactatccctgcgctgacgagcttctggatcttctgcatcactccggggttct 243
|||| ||||||||||| || || || |||||||| ||||||||||| |||||||||||||
Sbjct: 481 tcatntgaactatcccagcacttacaagcttctgaatcttctgcataactccggggttct 422
Query: 244 tgaggtgcgcctgcgcagcccgagggttctcctgcagatccgtcaaaacctgctgcatga 303
| |||||| |||| || |||| ||||||||||| | ||| | | ||||| ||||||
Sbjct: 421 tcaggtgctcctgggctgcccttgggttctcctggaaatcaattagcacctgtcgcatga 362
Query: 304 tcggatcagtcaggatgttctggatctcagggtcttgcatggctttgttctgtctctctt 363
| || || || || |||||||||||||| ||||||||||| |||||||||||||| ||||
Sbjct: 361 tagggtcggtaagaatgttctggatctctgggtcttgcatagctttgttctgtctttctt 302
Query: 364 tcagttcctcctcactgagttcgcctctgctcgccttggtgatctgttcaacacacctcc 423
|| ||| |||| ||| | ||| |||||| | |||||| |||||||||||| ||||||||
Sbjct: 301 gcaattcgtcctgacttatttcacctctgttggccttgttgatctgttcaatacacctcc 242
Query: 424 ttacaccatcaagtaactcctggtttttcgggncatgctttaggccagcttgataagttt 483
| ||||||||||| | ||| |||| || ||| ||||||| | |||||| || || ||||
Sbjct: 241 taacaccatcaagcagttccgggttgtttgggtcatgcttcaagccagcctggtaggttt 182
Query: 484 cca 486
|||
Sbjct: 181 cca 179
>gb|AW747621.1|AW747621 WS1_74_C09.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 599
Score = 174 bits (88), Expect = 5e-042
Identities = 249/303 (82%)
Strand = Plus / Minus
Query: 184 tcatctgaactatccctgcgctgacgagcttctggatcttctgcatcactccggggttct 243
|||| ||||||||||| || || || |||||||| ||||||||||| |||||||||||||
Sbjct: 369 tcatttgaactatcccagcacttacaagcttctgaatcttctgcataactccggggttct 310
Query: 244 tgaggtgcgcctgcgcagcccgagggttctcctgcagatccgtcaaaacctgctgcatga 303
| |||||| |||| || |||| ||||||||||| | ||| | | ||||| ||||||
Sbjct: 309 tcaggtgctcctgggctgcccttgggttctcctggaaatcaattagcacctgtcgcatga 250
Query: 304 tcggatcagtcaggatgttctggatctcagggtcttgcatggctttgttctgtctctctt 363
| || || || || |||||||||||||| ||||||||||| |||||||||||||| ||||
Sbjct: 249 tagggtcggtaagaatgttctggatctctgggtcttgcatagctttgttctgtctttctt 190
Query: 364 tcagttcctcctcactgagttcgcctctgctcgccttggtgatctgttcaacacacctcc 423
|| ||| |||| ||| | ||| |||||| | |||||| |||||||||||| ||||||||
Sbjct: 189 gcaattcgtcctgacttatttcacctctgttggccttgttgatctgttcaatacacctcc 130
Query: 424 ttacaccatcaagtaactcctggtttttcgggncatgctttaggccagcttgataagttt 483
| ||||||||||| | ||| |||| || ||| ||||||| | |||||| || || ||||
Sbjct: 129 taacaccatcaagcagttccgggttgtttgggtcatgcttcaagccagcctggtaggttt 70
Query: 484 cca 486
|||
Sbjct: 69 cca 67
>gb|AW923920.1|AW923920 WS1_30_B03.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 495
Score = 174 bits (88), Expect = 5e-042
Identities = 249/303 (82%)
Strand = Plus / Minus
Query: 184 tcatctgaactatccctgcgctgacgagcttctggatcttctgcatcactccggggttct 243
|||| ||||||||||| || || || |||||||| ||||||||||| |||||||||||||
Sbjct: 468 tcatttgaactatcccagcacttacaagcttctgaatcttctgcataactccggggttct 409
Query: 244 tgaggtgcgcctgcgcagcccgagggttctcctgcagatccgtcaaaacctgctgcatga 303
| |||||| |||| || |||| ||||||||||| | ||| | | ||||| ||||||
Sbjct: 408 tcaggtgctcctgggctgcccttgggttctcctggaaatcaattagcacctgtcgcatga 349
Query: 304 tcggatcagtcaggatgttctggatctcagggtcttgcatggctttgttctgtctctctt 363
| || || || || |||||||||||||| ||||||||||| |||||||||||||| ||||
Sbjct: 348 tagggtcggtaagaatgttctggatctctgggtcttgcatagctttgttctgtctttctt 289
Query: 364 tcagttcctcctcactgagttcgcctctgctcgccttggtgatctgttcaacacacctcc 423
|| ||| |||| ||| | ||| |||||| | |||||| |||||||||||| ||||||||
Sbjct: 288 gcaattcgtcctgacttatttcacctctgttggccttgttgatctgttcaatacacctcc 229
Query: 424 ttacaccatcaagtaactcctggtttttcgggncatgctttaggccagcttgataagttt 483
| ||||||||||| | ||| |||| || ||| ||||||| | |||||| || || ||||
Sbjct: 228 taacaccatcaagcagttccgggttgtttgggtcatgcttcaagccagcctggtaggttt 169
Query: 484 cca 486
|||
Sbjct: 168 cca 166
>gb|AW925011.1|AW925011 WS1_74_C09.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 589
Score = 174 bits (88), Expect = 5e-042
Identities = 249/303 (82%)
Strand = Plus / Minus
Query: 184 tcatctgaactatccctgcgctgacgagcttctggatcttctgcatcactccggggttct 243
|||| ||||||||||| || || || |||||||| ||||||||||| |||||||||||||
Sbjct: 468 tcatttgaactatcccagcacttacaagcttctgaatcttctgcataactccggggttct 409
Query: 244 tgaggtgcgcctgcgcagcccgagggttctcctgcagatccgtcaaaacctgctgcatga 303
| |||||| |||| || |||| ||||||||||| | ||| | | ||||| ||||||
Sbjct: 408 tcaggtgctcctgggctgcccttgggttctcctggaaatcaattagcacctgtcgcatga 349
Query: 304 tcggatcagtcaggatgttctggatctcagggtcttgcatggctttgttctgtctctctt 363
| || || || || |||||||||||||| ||||||||||| |||||||||||||| ||||
Sbjct: 348 tagggtcggtaagaatgttctggatctctgggtcttgcatagctttgttctgtctttctt 289
Query: 364 tcagttcctcctcactgagttcgcctctgctcgccttggtgatctgttcaacacacctcc 423
|| ||| |||| ||| | ||| |||||| | |||||| |||||||||||| ||||||||
Sbjct: 288 gcaattcgtcctgacttatttcacctctgttggccttgttgatctgttcaatacacctcc 229
Query: 424 ttacaccatcaagtaactcctggtttttcgggncatgctttaggccagcttgataagttt 483
| ||||||||||| | ||| |||| || ||| ||||||| | |||||| || || ||||
Sbjct: 228 taacaccatcaagcagttccgggttgtttgggtcatgcttcaagccagcctggtaggttt 169
Query: 484 cca 486
|||
Sbjct: 168 cca 166
>gb|BE598987.1|BE598987 PI1_86_A03.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 585
Score = 174 bits (88), Expect = 5e-042
Identities = 249/303 (82%)
Strand = Plus / Minus
Query: 184 tcatctgaactatccctgcgctgacgagcttctggatcttctgcatcactccggggttct 243
|||| ||||||||||| || || || |||||||| ||||||||||| |||||||||||||
Sbjct: 372 tcatttgaactatcccagcacttacaagcttctgaatcttctgcataactccggggttct 313
Query: 244 tgaggtgcgcctgcgcagcccgagggttctcctgcagatccgtcaaaacctgctgcatga 303
| |||||| |||| || |||| ||||||||||| | ||| | | ||||| ||||||
Sbjct: 312 tcaggtgctcctgggctgcccttgggttctcctggaaatcaattagcacctgtcgcatga 253
Query: 304 tcggatcagtcaggatgttctggatctcagggtcttgcatggctttgttctgtctctctt 363
| || || || || |||||||||||||| ||||||||||| |||||||||||||| ||||
Sbjct: 252 tagggtcggtaagaatgttctggatctctgggtcttgcatagctttgttctgtctttctt 193
Query: 364 tcagttcctcctcactgagttcgcctctgctcgccttggtgatctgttcaacacacctcc 423
|| ||| |||| ||| | ||| |||||| | |||||| |||||||||||| ||||||||
Sbjct: 192 gcaattcgtcctgacttatttcacctctgttggccttgttgatctgttcaatacacctcc 133
Query: 424 ttacaccatcaagtaactcctggtttttcgggncatgctttaggccagcttgataagttt 483
| ||||||||||| | ||| |||| || ||| ||||||| | |||||| || || ||||
Sbjct: 132 taacaccatcaagcagttccgggttgtttgggtcatgcttcaagccagcctggtaggttt 73
Query: 484 cca 486
|||
Sbjct: 72 cca 70
>gb|BG048518.1|BG048518 OV1_14_E09.g2_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 615
Score = 174 bits (88), Expect = 5e-042
Identities = 249/303 (82%)
Strand = Plus / Minus
Query: 184 tcatctgaactatccctgcgctgacgagcttctggatcttctgcatcactccggggttct 243
|||| ||||||||||| || || || |||||||| ||||||||||| |||||||||||||
Sbjct: 435 tcatttgaactatcccagcacttacaagcttctgaatcttctgcataactccggggttct 376
Query: 244 tgaggtgcgcctgcgcagcccgagggttctcctgcagatccgtcaaaacctgctgcatga 303
| |||||| |||| || |||| ||||||||||| | ||| | | ||||| ||||||
Sbjct: 375 tcaggtgctcctgggctgcccttgggttctcctggaaatcaattagcacctgtcgcatga 316
Query: 304 tcggatcagtcaggatgttctggatctcagggtcttgcatggctttgttctgtctctctt 363
| || || || || |||||||||||||| ||||||||||| |||||||||||||| ||||
Sbjct: 315 tagggtcggtaagaatgttctggatctctgggtcttgcatagctttgttctgtctttctt 256
Query: 364 tcagttcctcctcactgagttcgcctctgctcgccttggtgatctgttcaacacacctcc 423
|| ||| |||| ||| | ||| |||||| | |||||| |||||||||||| ||||||||
Sbjct: 255 gcaattcgtcctgacttatttcacctctgttggccttgttgatctgttcaatacacctcc 196
Query: 424 ttacaccatcaagtaactcctggtttttcgggncatgctttaggccagcttgataagttt 483
| ||||||||||| | ||| |||| || ||| ||||||| | |||||| || || ||||
Sbjct: 195 taacaccatcaagcagttccgggttgtttgggtcatgcttcaagccagcctggtaggttt 136
Query: 484 cca 486
|||
Sbjct: 135 cca 133
>gb|BG240707.1|BG240707 OV1_37_C06.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 554
Score = 174 bits (88), Expect = 5e-042
Identities = 249/303 (82%)
Strand = Plus / Minus
Query: 184 tcatctgaactatccctgcgctgacgagcttctggatcttctgcatcactccggggttct 243
|||| ||||||||||| || || || |||||||| ||||||||||| |||||||||||||
Sbjct: 376 tcatttgaactatcccagcacttacaagcttctgaatcttctgcataactccggggttct 317
Query: 244 tgaggtgcgcctgcgcagcccgagggttctcctgcagatccgtcaaaacctgctgcatga 303
| |||||| |||| || |||| ||||||||||| | ||| | | ||||| ||||||
Sbjct: 316 tcaggtgctcctgggctgcccttgggttctcctggaaatcaattagcacctgtcgcatga 257
Query: 304 tcggatcagtcaggatgttctggatctcagggtcttgcatggctttgttctgtctctctt 363
| || || || || |||||||||||||| ||||||||||| |||||||||||||| ||||
Sbjct: 256 tagggtcggtaagaatgttctggatctctgggtcttgcatagctttgttctgtctttctt 197
Query: 364 tcagttcctcctcactgagttcgcctctgctcgccttggtgatctgttcaacacacctcc 423
|| ||| |||| ||| | ||| |||||| | |||||| |||||||||||| ||||||||
Sbjct: 196 gcaattcgtcctgacttatttcacctctgttggccttgttgatctgttcaatacacctcc 137
Query: 424 ttacaccatcaagtaactcctggtttttcgggncatgctttaggccagcttgataagttt 483
| ||||||||||| | ||| |||| || ||| ||||||| | |||||| || || ||||
Sbjct: 136 taacaccatcaagcagttccgggttgtttgggtcatgcttcaagccagcctggtaggttt 77
Query: 484 cca 486
|||
Sbjct: 76 cca 74
>gb|BG947049.1|BG947049 IP1_2_H09.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 590
Score = 174 bits (88), Expect = 5e-042
Identities = 249/303 (82%)
Strand = Plus / Minus
Query: 184 tcatctgaactatccctgcgctgacgagcttctggatcttctgcatcactccggggttct 243
|||| ||||||||||| || || || |||||||| ||||||||||| |||||||||||||
Sbjct: 358 tcatttgaactatcccagcacttacaagcttctgaatcttctgcataactccggggttct 299
Query: 244 tgaggtgcgcctgcgcagcccgagggttctcctgcagatccgtcaaaacctgctgcatga 303
| |||||| |||| || |||| ||||||||||| | ||| | | ||||| ||||||
Sbjct: 298 tcaggtgctcctgggctgcccttgggttctcctggaaatcaattagcacctgtcgcatga 239
Query: 304 tcggatcagtcaggatgttctggatctcagggtcttgcatggctttgttctgtctctctt 363
| || || || || |||||||||||||| ||||||||||| |||||||||||||| ||||
Sbjct: 238 tagggtcggtaagaatgttctggatctctgggtcttgcatagctttgttctgtctttctt 179
Query: 364 tcagttcctcctcactgagttcgcctctgctcgccttggtgatctgttcaacacacctcc 423
|| ||| |||| ||| | ||| |||||| | |||||| |||||||||||| ||||||||
Sbjct: 178 gcaattcgtcctgacttatttcacctctgttggccttgttgatctgttcaatacacctcc 119
Query: 424 ttacaccatcaagtaactcctggtttttcgggncatgctttaggccagcttgataagttt 483
| ||||||||||| | ||| |||| || ||| ||||||| | |||||| || || ||||
Sbjct: 118 taacaccatcaagcagttccgggttgtttgggtcatgcttcaagccagcctggtaggttt 59
Query: 484 cca 486
|||
Sbjct: 58 cca 56
>gb|CD424860.1|CD424860 SA1_9_E01.b1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_9_E01_A002 3', mRNA sequence
Length = 605
Score = 174 bits (88), Expect = 5e-042
Identities = 249/303 (82%)
Strand = Plus / Minus
Query: 184 tcatctgaactatccctgcgctgacgagcttctggatcttctgcatcactccggggttct 243
|||| ||||||||||| || || || |||||||| ||||||||||| |||||||||||||
Sbjct: 363 tcatttgaactatcccagcacttacaagcttctgaatcttctgcataactccggggttct 304
Query: 244 tgaggtgcgcctgcgcagcccgagggttctcctgcagatccgtcaaaacctgctgcatga 303
| |||||| |||| || |||| ||||||||||| | ||| | | ||||| ||||||
Sbjct: 303 tcaggtgctcctgggctgcccttgggttctcctggaaatcaattagcacctgtcgcatga 244
Query: 304 tcggatcagtcaggatgttctggatctcagggtcttgcatggctttgttctgtctctctt 363
| || || || || |||||||||||||| ||||||||||| |||||||||||||| ||||
Sbjct: 243 tagggtcggtaagaatgttctggatctctgggtcttgcatagctttgttctgtctttctt 184
Query: 364 tcagttcctcctcactgagttcgcctctgctcgccttggtgatctgttcaacacacctcc 423
|| ||| |||| ||| | ||| |||||| | |||||| |||||||||||| ||||||||
Sbjct: 183 gcaattcgtcctgacttatttcacctctgttggccttgttgatctgttcaatacacctcc 124
Query: 424 ttacaccatcaagtaactcctggtttttcgggncatgctttaggccagcttgataagttt 483
| ||||||||||| | ||| |||| || ||| ||||||| | |||||| || || ||||
Sbjct: 123 taacaccatcaagcagttccgggttgtttgggtcatgcttcaagccagcctggtaggttt 64
Query: 484 cca 486
|||
Sbjct: 63 cca 61
>gb|AW679708.1|AW679708 WS1_30_B03.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 531
Score = 168 bits (85), Expect = 3e-040
Identities = 211/253 (83%)
Strand = Plus / Minus
Query: 184 tcatctgaactatccctgcgctgacgagcttctggatcttctgcatcactccggggttct 243
|||| ||||||||||| || || || |||||||| ||||||||||| |||||||||||||
Sbjct: 287 tcatttgaactatcccagcacttacaagcttctgaatcttctgcataactccggggttct 228
Query: 244 tgaggtgcgcctgcgcagcccgagggttctcctgcagatccgtcaaaacctgctgcatga 303
| |||||| |||| || |||| ||||||||||| | ||| | | ||||| ||||||
Sbjct: 227 tcaggtgctcctgggctgcccttgggttctcctggaaatcaattagcacctgtcgcatga 168
Query: 304 tcggatcagtcaggatgttctggatctcagggtcttgcatggctttgttctgtctctctt 363
| || || || || |||||||||||||| ||||||||||| |||||||||||||| ||||
Sbjct: 167 tagggtcggtaagaatgttctggatctctgggtcttgcatagctttgttctgtctttctt 108
Query: 364 tcagttcctcctcactgagttcgcctctgctcgccttggtgatctgttcaacacacctcc 423
|| ||| |||| ||| | ||| |||||| | |||||| |||||||||||| ||||||||
Sbjct: 107 gcaattcgtcctgacttatttcacctctgttggccttgttgatctgttcaatacacctcc 48
Query: 424 ttacaccatcaag 436
| |||||||||||
Sbjct: 47 taacaccatcaag 35
>gb|BG052764.1|BG052764 RHIZ2_14_E10.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 617
Score = 167 bits (84), Expect = 1e-039
Identities = 248/303 (81%)
Strand = Plus / Minus
Query: 184 tcatctgaactatccctgcgctgacgagcttctggatcttctgcatcactccggggttct 243
|||| ||||||||||| || || || |||||||| |||||||||| |||||||||||||
Sbjct: 436 tcatttgaactatcccagcacttacaagcttctgaatcttctgcaaaactccggggttct 377
Query: 244 tgaggtgcgcctgcgcagcccgagggttctcctgcagatccgtcaaaacctgctgcatga 303
| |||||| |||| || |||| ||||||||||| | ||| | | ||||| ||||||
Sbjct: 376 tcaggtgctcctgggctgcccttgggttctcctggaaatcaattagcacctgtcgcatga 317
Query: 304 tcggatcagtcaggatgttctggatctcagggtcttgcatggctttgttctgtctctctt 363
| || || || || |||||||||||||| ||||||||||| |||||||||||||| ||||
Sbjct: 316 tagggtcggtaagaatgttctggatctctgggtcttgcatagctttgttctgtctttctt 257
Query: 364 tcagttcctcctcactgagttcgcctctgctcgccttggtgatctgttcaacacacctcc 423
|| ||| |||| ||| | ||| |||||| | |||||| |||||||||||| ||||||||
Sbjct: 256 gcaattcgtcctgacttatttcacctctgttggccttgttgatctgttcaatacacctcc 197
Query: 424 ttacaccatcaagtaactcctggtttttcgggncatgctttaggccagcttgataagttt 483
| ||||||||||| | ||| |||| || ||| ||||||| | |||||| || || ||||
Sbjct: 196 taacaccatcaagcagttccgggttgtttgggtcatgcttcaagccagcctggtaggttt 137
Query: 484 cca 486
|||
Sbjct: 136 cca 134
>gb|AW746132.1|AW746132 WS1_39_H03.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 512
Score = 161 bits (81), Expect = 7e-038
Identities = 210/253 (83%)
Strand = Plus / Minus
Query: 184 tcatctgaactatccctgcgctgacgagcttctggatcttctgcatcactccggggttct 243
|||| ||||||||||| || || || |||||||| ||||||||||| |||||||||||||
Sbjct: 285 tcatttgaactatcccagcacttacaagcttctgaatcttctgcataactccggggttct 226
Query: 244 tgaggtgcgcctgcgcagcccgagggttctcctgcagatccgtcaaaacctgctgcatga 303
| | |||| |||| || |||| ||||||||||| | ||| | | ||||| ||||||
Sbjct: 225 tcaagtgctcctgggctgcccttgggttctcctggaaatcaattagcacctgtcgcatga 166
Query: 304 tcggatcagtcaggatgttctggatctcagggtcttgcatggctttgttctgtctctctt 363
| || || || || |||||||||||||| ||||||||||| |||||||||||||| ||||
Sbjct: 165 tagggtcggtaagaatgttctggatctctgggtcttgcatagctttgttctgtctttctt 106
Query: 364 tcagttcctcctcactgagttcgcctctgctcgccttggtgatctgttcaacacacctcc 423
|| ||| |||| ||| | ||| |||||| | |||||| |||||||||||| ||||||||
Sbjct: 105 gcaattcgtcctgacttatttcacctctgttggccttgttgatctgttcaatacacctcc 46
Query: 424 ttacaccatcaag 436
| |||||||||||
Sbjct: 45 taacaccatcaag 33
>gb|BE364598.2|BE364598 PI1_15_B06.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 532
Score = 161 bits (81), Expect = 7e-038
Identities = 210/253 (83%)
Strand = Plus / Minus
Query: 184 tcatctgaactatccctgcgctgacgagcttctggatcttctgcatcactccggggttct 243
|||| ||||||||||| || || || |||||||| ||||||||||| |||||||||||||
Sbjct: 288 tcatttgaactatcccagcacttacaagcttctgaatcttctgcataactccggggttct 229
Query: 244 tgaggtgcgcctgcgcagcccgagggttctcctgcagatccgtcaaaacctgctgcatga 303
| |||||| |||| || |||| ||||||||||| | ||| | | ||||| ||||||
Sbjct: 228 tcaggtgctcctgggctgcccttgggttctcctggaaatcaattagcacctgtcgcatga 169
Query: 304 tcggatcagtcaggatgttctggatctcagggtcttgcatggctttgttctgtctctctt 363
| || || || || |||||||||||||| ||||||||||| |||||||||||||| ||||
Sbjct: 168 tagggtcggtaagaatgttctggatctctgggtcttgcatagctttgttctgtctttctt 109
Query: 364 tcagttcctcctcactgagttcgcctctgctcgccttggtgatctgttcaacacacctcc 423
|| ||| |||| ||| | ||| |||||| | |||||| |||||||||||| ||||||||
Sbjct: 108 gcaattcgtcctgacttatttcacctctgttggccttgttgatctgttcaatacacctcc 49
Query: 424 ttacaccatcaag 436
| |||| ||||||
Sbjct: 48 taacacaatcaag 36
>gb|BE364817.2|BE364817 PI1_16_D01.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 527
Score = 161 bits (81), Expect = 7e-038
Identities = 210/253 (83%)
Strand = Plus / Minus
Query: 184 tcatctgaactatccctgcgctgacgagcttctggatcttctgcatcactccggggttct 243
|||| ||||||||||| || || || |||||||| ||||||||||| |||||||||||||
Sbjct: 283 tcatttgaactatcccagcacttacaagcttctgaatcttctgcataactccggggttct 224
Query: 244 tgaggtgcgcctgcgcagcccgagggttctcctgcagatccgtcaaaacctgctgcatga 303
| |||||| |||| || |||| ||||||||||| | ||| | | ||||| ||||||
Sbjct: 223 tcaggtgctcctgggctgcccttgggttctcctggaaatcaattagcacctgtcgcatga 164
Query: 304 tcggatcagtcaggatgttctggatctcagggtcttgcatggctttgttctgtctctctt 363
| || || || || |||||||||||||| ||||||||||| |||||||||||||| ||||
Sbjct: 163 tagggtcggtaagaatgttctggatctctgggtcttgcatagctttgttctgtctttctt 104
Query: 364 tcagttcctcctcactgagttcgcctctgctcgccttggtgatctgttcaacacacctcc 423
|| ||| |||| ||| | ||| |||||| | |||||| |||||||||||| ||||||||
Sbjct: 103 gcaattcgtcctgacttatttcacctctgttggccttgttgatctgttcaatacacctcc 44
Query: 424 ttacaccatcaag 436
| |||| ||||||
Sbjct: 43 taacacaatcaag 31
>gb|CB929152.1|CB929152 ABA1_40_A09.b1_A012 Abscisic acid-treated seedlings Sorghum bicolor
cDNA clone ABA1_40_A09_A012 3', mRNA sequence
Length = 500
Score = 153 bits (77), Expect = 2e-035
Identities = 209/253 (82%)
Strand = Plus / Minus
Query: 184 tcatctgaactatccctgcgctgacgagcttctggatcttctgcatcactccggggttct 243
|||| ||||||||||| || || || |||||||| ||||||||||| |||||||||||||
Sbjct: 282 tcatttgaactatcccagcacttacaagcttctgaatcttctgcataactccggggttct 223
Query: 244 tgaggtgcgcctgcgcagcccgagggttctcctgcagatccgtcaaaacctgctgcatga 303
| |||||| |||| || |||| ||||||||||| | ||| | || ||||| |||||
Sbjct: 222 tcaggtgctcctgggctgcccttgggttctcctggaaatcaattaacacctgtcccatga 163
Query: 304 tcggatcagtcaggatgttctggatctcagggtcttgcatggctttgttctgtctctctt 363
| || || || | |||||||||||||| ||| ||||||| |||||||||||||| ||||
Sbjct: 162 tagggtcggtaaaaatgttctggatctctggggcttgcatagctttgttctgtctttctt 103
Query: 364 tcagttcctcctcactgagttcgcctctgctcgccttggtgatctgttcaacacacctcc 423
|| ||| |||| ||| | ||| |||||| | |||||| |||||||||||| ||||||||
Sbjct: 102 gcaattcgtcctgacttatttcacctctgttggccttgttgatctgttcaatacacctcc 43
Query: 424 ttacaccatcaag 436
| |||||||||||
Sbjct: 42 taacaccatcaag 30
>gb|BG273158.1|BG273158 OV2_27_E09.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 631
Score = 145 bits (73), Expect = 4e-033
Identities = 226/276 (81%), Gaps = 1/276 (0%)
Strand = Plus / Minus
Query: 211 gcttctggatcttctgcatcactccggggttcttgaggtgcgcctgcgcagcccgagggt 270
||||||| ||||||||||| |||||||||||||| |||||| |||| || |||| ||||
Sbjct: 631 gcttctgaatcttctgcataactccggggttcttcaggtgctcctgggctgcccttgggt 572
Query: 271 tctcctgcagatccgtcaaaacctgctgcatgatcggatcagtcaggatgttctggatct 330
||||||| | || | | ||||| ||||||| || || || || |||||||||||||
Sbjct: 571 tctcctggaaataatt-agcacctgtcgcatgatagggtcggtaagaatgttctggatct 513
Query: 331 cagggtcttgcatggctttgttctgtctctctttcagttcctcctcactgagttcgcctc 390
| ||||||||||| |||||||||||||| |||| || ||| |||| ||| | ||| ||||
Sbjct: 512 ctgggtcttgcatagctttgttctgtctttcttgcaattcgtcctgacttatttcacctc 453
Query: 391 tgctcgccttggtgatctgttcaacacacctccttacaccatcaagtaactcctggtttt 450
|| | |||||| |||||||||||| ||||||||| ||||||||||| | ||| |||| |
Sbjct: 452 tgttggccttgttgatctgttcaatacacctcctaacaccatcaagcagttccgggttgt 393
Query: 451 tcgggncatgctttaggccagcttgataagtttcca 486
| ||| ||||||| | |||||| || || |||||||
Sbjct: 392 ttgggtcatgcttcaagccagcctggtaggtttcca 357
>gb|BZ625902.1|BZ625902 ih41e06.g1 WGS-SbicolorF (DH5a methyl filtered) Sorghum bicolor
genomic clone ih41e06 5', DNA sequence
Length = 712
Score = 125 bits (63), Expect = 4e-027
Identities = 68/70 (97%)
Strand = Plus / Minus
Query: 418 acctccttacaccatcaagtaactcctggtttttcgggncatgctttaggccagcttgat 477
|||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct: 494 acctccttacaccatcaagtaactcctggtttttcgggtcatgctttaagccagcttgat 435
Query: 478 aagtttccag 487
||||||||||
Sbjct: 434 aagtttccag 425
Score = 97.6 bits (49), Expect = 9e-019
Identities = 64/69 (92%)
Strand = Plus / Minus
Query: 353 ctgtctctctttcagttcctcctcactgagttcgcctctgctcgccttggtgatctgttc 412
||||||||||| |||||| ||||| ||||||||||| |||||||||||| ||||||||||
Sbjct: 648 ctgtctctcttccagttcatcctcgctgagttcgcccctgctcgccttgttgatctgttc 589
Query: 413 aacacacct 421
|||||||||
Sbjct: 588 aacacacct 580
>gb|CL159623.1|CL159623 104_349_10804388_114_31381_212 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10804388, DNA
sequence
Length = 787
Score = 125 bits (63), Expect = 4e-027
Identities = 68/70 (97%)
Strand = Plus / Minus
Query: 418 acctccttacaccatcaagtaactcctggtttttcgggncatgctttaggccagcttgat 477
|||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct: 721 acctccttacaccatcaagtaactcctggtttttcgggtcatgctttaagccagcttgat 662
Query: 478 aagtttccag 487
||||||||||
Sbjct: 661 aagtttccag 652
>gb|CL159624.1|CL159624 104_349_10804388_116_31382_212 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10804388, DNA
sequence
Length = 780
Score = 125 bits (63), Expect = 4e-027
Identities = 68/70 (97%)
Strand = Plus / Plus
Query: 418 acctccttacaccatcaagtaactcctggtttttcgggncatgctttaggccagcttgat 477
|||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct: 300 acctccttacaccatcaagtaactcctggtttttcgggtcatgctttaagccagcttgat 359
Query: 478 aagtttccag 487
||||||||||
Sbjct: 360 aagtttccag 369
Score = 113 bits (57), Expect = 2e-023
Identities = 66/69 (95%)
Strand = Plus / Plus
Query: 353 ctgtctctctttcagttcctcctcactgagttcgcctctgctcgccttggtgatctgttc 412
|||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||
Sbjct: 146 ctgtctctctttcagttcctcctcgctgagttcgcccctgctcgccttgttgatctgttc 205
Query: 413 aacacacct 421
|||||||||
Sbjct: 206 aacacacct 214
Score = 52.0 bits (26), Expect = 5e-005
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 321 ttctggatctcagggtcttgcatggctttgttct 354
|||||||| |||||||| ||||||||||||||||
Sbjct: 1 ttctggatttcagggtcctgcatggctttgttct 34
>gb|CW063072.1|CW063072 104_308_10521699_5_30097 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10521699, DNA
sequence
Length = 543
Score = 125 bits (63), Expect = 4e-027
Identities = 68/70 (97%)
Strand = Plus / Minus
Query: 418 acctccttacaccatcaagtaactcctggtttttcgggncatgctttaggccagcttgat 477
|||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct: 516 acctccttacaccatcaagtaactcctggtttttcgggtcatgctttaagccagcttgat 457
Query: 478 aagtttccag 487
||||||||||
Sbjct: 456 aagtttccag 447
>gb|CW196206.1|CW196206 104_620_11181046_116_36812_093 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11181046, DNA
sequence
Length = 749
Score = 125 bits (63), Expect = 4e-027
Identities = 68/70 (97%)
Strand = Plus / Plus
Query: 418 acctccttacaccatcaagtaactcctggtttttcgggncatgctttaggccagcttgat 477
|||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct: 259 acctccttacaccatcaagtaactcctggtttttcgggtcatgctttaagccagcttgat 318
Query: 478 aagtttccag 487
||||||||||
Sbjct: 319 aagtttccag 328
Score = 113 bits (57), Expect = 2e-023
Identities = 66/69 (95%)
Strand = Plus / Plus
Query: 353 ctgtctctctttcagttcctcctcactgagttcgcctctgctcgccttggtgatctgttc 412
|||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||
Sbjct: 105 ctgtctctctttcagttcctcctcgctgagttcgcccctgctcgccttgttgatctgttc 164
Query: 413 aacacacct 421
|||||||||
Sbjct: 165 aacacacct 173
>gb|CW204053.1|CW204053 104_631_11186336_116_37095_018 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11186336, DNA
sequence
Length = 682
Score = 125 bits (63), Expect = 4e-027
Identities = 68/70 (97%)
Strand = Plus / Plus
Query: 418 acctccttacaccatcaagtaactcctggtttttcgggncatgctttaggccagcttgat 477
|||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct: 66 acctccttacaccatcaagtaactcctggtttttcgggtcatgctttaagccagcttgat 125
Query: 478 aagtttccag 487
||||||||||
Sbjct: 126 aagtttccag 135
>gb|CW385665.1|CW385665 fsbb001f069d17k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f069d17, DNA
sequence
Length = 777
Score = 109 bits (55), Expect = 2e-022
Identities = 67/70 (95%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 418 acctccttacaccatcaagtaactcctggtttttcgggncatgctttaggccagcttgat 477
|||||||||| ||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct: 22 acctccttac-ccatcaagtaactcctggtttttcgggtcatgctttaagccagcttgat 80
Query: 478 aagtttccag 487
||||||||||
Sbjct: 81 aagtttccag 90
>gb|BG053524.1|BG053524 RHIZ2_10_C06.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 455
Score = 105 bits (53), Expect = 4e-021
Identities = 148/180 (82%)
Strand = Plus / Minus
Query: 184 tcatctgaactatccctgcgctgacgagcttctggatcttctgcatcactccggggttct 243
|||| ||||||||||| || || || |||||||| |||||||||| |||||||||||||
Sbjct: 180 tcatttgaactatcccagcacttacaagcttctgaatcttctgcaaaactccggggttct 121
Query: 244 tgaggtgcgcctgcgcagcccgagggttctcctgcagatccgtcaaaacctgctgcatga 303
| |||||| |||| || |||| ||||||||||| | ||| | | ||||| ||||||
Sbjct: 120 tcaggtgctcctgggctgcccttgggttctcctggaaatcaattancacctgtcgcatga 61
Query: 304 tcggatcagtcaggatgttctggatctcagggtcttgcatggctttgttctgtctctctt 363
| || || || | |||||||||||||| ||||||||||| |||||||||||||| ||||
Sbjct: 60 tagggtcggtaaaaatgttctggatctctgggtcttgcatagctttgttctgtctttctt 1
>gb|AW679148.1|AW679148 WS1_22_D09.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 538
Score = 89.7 bits (45), Expect = 2e-016
Identities = 84/97 (86%)
Strand = Plus / Minus
Query: 318 atgttctggatctcagggtcttgcatggctttgttctgtctctctttcagttcctcctca 377
|||||||||||||| ||||||||||| |||||||||||||| |||| || ||| |||| |
Sbjct: 200 atgttctggatctctgggtcttgcatagctttgttctgtctttcttgcaattcgtcctga 141
Query: 378 ctgagttcgcctctgctcgccttggtgatctgttcaa 414
|| | ||| |||||| | |||||| ||||||||||||
Sbjct: 140 cttatttcacctctgttggccttgttgatctgttcaa 104
Score = 48.1 bits (24), Expect = 8e-004
Identities = 45/52 (86%)
Strand = Plus / Minus
Query: 184 tcatctgaactatccctgcgctgacgagcttctggatcttctgcatcactcc 235
|||| ||||||||||| || || || |||||||| ||||||||||| |||||
Sbjct: 306 tcatttgaactatcccagcacttacaagcttctgaatcttctgcataactcc 255
>gb|CW427101.1|CW427101 fsbb001f138o15k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f138o15, DNA
sequence
Length = 596
Score = 83.8 bits (42), Expect = 1e-014
Identities = 81/94 (86%)
Strand = Plus / Minus
Query: 184 tcatctgaactatccctgcgctgacgagcttctggatcttctgcatcactccggggttct 243
|||| ||||||||||| || || || |||||||| ||||||||||| |||||||||||||
Sbjct: 444 tcatttgaactatcccagcacttacaagcttctgaatcttctgcataactccggggttct 385
Query: 244 tgaggtgcgcctgcgcagcccgagggttctcctg 277
| |||||| |||| || |||| |||||||||||
Sbjct: 384 tcaggtgctcctgggctgcccttgggttctcctg 351
Score = 60.0 bits (30), Expect = 2e-007
Identities = 36/38 (94%)
Strand = Plus / Minus
Query: 318 atgttctggatctcagggtcttgcatggctttgttctg 355
|||||||||||||| ||||||||||| |||||||||||
Sbjct: 226 atgttctggatctctgggtcttgcatagctttgttctg 189
Score = 42.1 bits (21), Expect = 0.046
Identities = 57/69 (82%)
Strand = Plus / Minus
Query: 353 ctgtctctctttcagttcctcctcactgagttcgcctctgctcgccttggtgatctgttc 412
|||||| |||| || ||| |||| ||| | ||| |||||| | |||||| ||||||||||
Sbjct: 99 ctgtctttcttgcaattcgtcctgacttatttcacctctgttggccttgttgatctgttc 40
Query: 413 aacacacct 421
|| ||||||
Sbjct: 39 aatacacct 31
>gb|CW474171.1|CW474171 fsbb001f229o04f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f229o04, DNA
sequence
Length = 670
Score = 83.8 bits (42), Expect = 1e-014
Identities = 81/94 (86%)
Strand = Plus / Plus
Query: 184 tcatctgaactatccctgcgctgacgagcttctggatcttctgcatcactccggggttct 243
|||| ||||||||||| || || || |||||||| ||||||||||| |||||||||||||
Sbjct: 316 tcatttgaactatcccagcacttacaagcttctgaatcttctgcataactccggggttct 375
Query: 244 tgaggtgcgcctgcgcagcccgagggttctcctg 277
| |||||| |||| || |||| |||||||||||
Sbjct: 376 tcaggtgctcctgggctgcccttgggttctcctg 409
Score = 60.0 bits (30), Expect = 2e-007
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 318 atgttctggatctcagggtcttgcatggctttgttctg 355
|||||||||||||| ||||||||||| |||||||||||
Sbjct: 534 atgttctggatctctgggtcttgcatagctttgttctg 571
>gb|BG947050.1|BG947050 IP1_2_H10.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 299
Score = 69.9 bits (35), Expect = 2e-010
Identities = 59/67 (88%)
Strand = Plus / Minus
Query: 184 tcatctgaactatccctgcgctgacgagcttctggatcttctgcatcactccggggttct 243
|||| ||||||||||| || || || |||||||| ||||||||||| |||||||||||||
Sbjct: 67 tcatttgaactatcccagcacttacaagcttctgaatcttctgcataactccggggttct 8
Query: 244 tgaggtg 250
| |||||
Sbjct: 7 tcaggtg 1
>gb|BI099220.1|BI099220 IP1_39_H05.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 310
Score = 65.9 bits (33), Expect = 3e-009
Identities = 54/61 (88%)
Strand = Plus / Minus
Query: 184 tcatctgaactatccctgcgctgacgagcttctggatcttctgcatcactccggggttct 243
|||| ||||||||||| || || || |||||||| ||||||||||| |||||||||||||
Sbjct: 64 tcatttgaactatcccagcacttacaagcttctgaatcttctgcataactccggggttct 5
Query: 244 t 244
|
Sbjct: 4 t 4
>gb|AW679016.1|AW679016 WS1_22_D09.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 200
Score = 60.0 bits (30), Expect = 2e-007
Identities = 74/89 (83%)
Strand = Plus / Minus
Query: 398 cttggtgatctgttcaacacacctccttacaccatcaagtaactcctggtttttcgggnc 457
|||| |||||||||||| ||||||||| ||||||||||| | ||| |||| || ||| |
Sbjct: 200 cttgttgatctgttcaatacacctcctaacaccatcaagcagttccgggttgtttgggtc 141
Query: 458 atgctttaggccagcttgataagtttcca 486
|||||| | |||||| || || |||||||
Sbjct: 140 atgcttcaagccagcctggtaggtttcca 112
>gb|AW565411.1|AW565411 LG1_343_H08.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 400
Score = 58.0 bits (29), Expect = 8e-007
Identities = 134/169 (79%)
Strand = Plus / Minus
Query: 183 ttcatctgaactatccctgcgctgacgagcttctggatcttctgcatcactccggggttc 242
||||| ||||||||||| || || || ||||| || || || ||||| |||||||||||
Sbjct: 169 ttcatttgaactatcccagcacttacaagcttttgaattttttgcataactccggggttt 110
Query: 243 ttgaggtgcgcctgcgcagcccgagggttctcctgcagatccgtcaaaacctgctgcatg 302
|| ||| || |||| || |||| ||||||||||| | ||| | | ||||| |||||
Sbjct: 109 ttcaggggctcctgggctgcccttgggttctcctggaaatcaattaccacctgtcgcatg 50
Query: 303 atcggatcagtcaggatgttctggatctcagggtcttgcatggctttgt 351
|| || || || | |||||||||||||| ||||||||||| |||||||
Sbjct: 49 atagggtcggtaaaaatgttctggatctctgggtcttgcatagctttgt 1
>gb|CW336658.1|CW336658 104_836_11483713_116_36110_013 Sorghum methylation filtered
library (LibID: 104) Sorghum bicolor genomic clone
11483713, DNA sequence
Length = 680
Score = 44.1 bits (22), Expect = 0.012
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 47 atatggatcattaacagccatgacca 72
|||||||| |||||||||||||||||
Sbjct: 53 atatggataattaacagccatgacca 28
>gb|CW474172.1|CW474172 fsbb001f229o04k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f229o04, DNA
sequence
Length = 611
Score = 42.1 bits (21), Expect = 0.046
Identities = 57/69 (82%)
Strand = Plus / Minus
Query: 353 ctgtctctctttcagttcctcctcactgagttcgcctctgctcgccttggtgatctgttc 412
|||||| |||| || ||| |||| ||| | ||| |||||| | |||||| ||||||||||
Sbjct: 538 ctgtctttcttgcaattcgtcctgacttatttcacctctgttggccttgttgatctgttc 479
Query: 413 aacacacct 421
|| ||||||
Sbjct: 478 aatacacct 470
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 105,278
Number of Sequences: 832831
Number of extensions: 105278
Number of successful extensions: 28012
Number of sequences better than 0.5: 38
Number of HSP's better than 0.5 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 27925
Number of HSP's gapped (non-prelim): 79
length of query: 487
length of database: 491,359,669
effective HSP length: 19
effective length of query: 468
effective length of database: 475,535,880
effective search space: 222550791840
effective search space used: 222550791840
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)