BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3570920.2.1
(786 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW271590.1|CW271590 104_743_11403078_148_35343_017 Sorgh... 916 0.0
gb|CW173535.1|CW173535 104_585_11156899_148_36550_076 Sorgh... 831 0.0
gb|CL190246.1|CL190246 104_408_10905953_116_32501_075 Sorgh... 700 0.0
gb|CW452973.1|CW452973 fsbb001f193m09f0 Sorghum methylation... 268 7e-070
gb|CW173534.1|CW173534 104_585_11156899_116_36549_076 Sorgh... 202 3e-050
gb|BG102297.1|BG102297 RHIZ2_24_E11.b1_A003 Rhizome2 (RHIZ2... 107 2e-021
gb|BG102078.1|BG102078 RHIZ2_24_E11.g1_A003 Rhizome2 (RHIZ2... 84 2e-014
gb|DR831561.1|DR831561 MT14 Sorghum bicolor greenbug-respon... 44 0.019
gb|CW027519.1|CW027519 104_254_10498564_116_30396 Sorghum m... 42 0.076
gb|CW061654.1|CW061654 104_305_10520517_114_30152 Sorghum m... 42 0.076
gb|CW280421.1|CW280421 104_755_11407611_116_35443_006 Sorgh... 42 0.076
gb|CW280422.1|CW280422 104_755_11407611_148_35447_006 Sorgh... 42 0.076
gb|CW323755.1|CW323755 104_818_11476798_148_35909_095 Sorgh... 42 0.076
gb|BE598996.1|BE598996 PI1_86_B02.g1_A002 Pathogen induced ... 42 0.076
gb|CF675675.1|CF675675 RUBISCO Subtractive cDNA library fro... 42 0.076
gb|CW150042.1|CW150042 104_549_11142820_116_36302_010 Sorgh... 40 0.30
gb|CF675626.1|CF675626 THAU2 Subtractive cDNA library from ... 40 0.30
gb|DV162795.1|DV162795 P1-M15 Sorghum bicolor greenbug-resp... 40 0.30
gb|DV162819.1|DV162819 P5-B11 Sorghum bicolor greenbug-resp... 40 0.30
gb|DV162820.1|DV162820 P3-G6 Sorghum bicolor greenbug-respo... 40 0.30
gb|DV162819.2|DV162819 P5-B11 Sorghum bicolor greenbug-resp... 40 0.30
>gb|CW271590.1|CW271590 104_743_11403078_148_35343_017 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11403078, DNA
sequence
Length = 633
Score = 916 bits (462), Expect = 0.0
Identities = 533/557 (95%)
Strand = Plus / Minus
Query: 217 ttgaagcctatgctccagttccttgtggagaatcaggcaccgttcatggtggatttgtac 276
||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |||
Sbjct: 633 ttgaagcctatgctcgagttccttgtggagaatcaggcgccgttcatggtggatttatac 574
Query: 277 ccctactatgcgtaccagaactcgcggagcaatgtgtccctcaactacgcgctgttctcg 336
|| |||||||||||||||||||| | |||||||||||||||||||||||| |||||||||
Sbjct: 573 ccntactatgcgtaccagaactcaccgagcaatgtgtccctcaactacgccctgttctcg 514
Query: 337 ccagagtcccaggatgtgattgacccaaacactggactggtttacactaacatgttcgac 396
||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 513 ccacagtctcaggatgtgattgacccaaacactggactggtttacactaacatgtttgat 454
Query: 397 gcccaggtcgattccatcttctttgcgctcatggctctgaacttcaagactttgaagatc 456
|||||||| |||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct: 453 gcccaggttgattccatcttctttgcgctcatggctctgaacttcaaaactctgaagatc 394
Query: 457 atgatcactgagtcagggtggccaaacaaaggggcggtcaaggagactggagccacacca 516
||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct: 393 atgatcactgagtcagggtggccaaacaaaggggcggccaaggagactggagccactcca 334
Query: 517 gacaatgctcagacctacaataccaatttgatacgccatgttgttaatgacagcggcaca 576
|||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 333 gacaatgctcagacttacaataccaatttgatacgccatgttgttaatgacagtggcacg 274
Query: 577 ccggcgaaaccaggggaagagattgatgtctacatattttcattgttcaatgagaacagg 636
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 273 cctgcgaaaccaggggaagaaattgatgtctacatattttcattgttcaatgagaacagg 214
Query: 637 aaacctggcatcgagtcggagaggaactggggactgttttttcctgataagagctctatc 696
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 aaacctggcattgagtcggagaggaactggggactgttttttcctgataagagctctatc 154
Query: 697 tacagccttgattggacgggccgaggcaatgtggatgtgatgactggagcaaacattaca 756
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 153 tacagccttgattggacgggccgaggcaatgtggatgttatgactggagcaaacattaca 94
Query: 757 agtgctaatggtacctg 773
||||| |||||||||||
Sbjct: 93 agtgcaaatggtacctg 77
>gb|CW173535.1|CW173535 104_585_11156899_148_36550_076 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11156899, DNA
sequence
Length = 645
Score = 831 bits (419), Expect = 0.0
Identities = 479/499 (95%)
Strand = Plus / Plus
Query: 275 acccctactatgcgtaccagaactcgcggagcaatgtgtccctcaactacgcgctgttct 334
||||||||||||||||||||||||| | |||||||||||||||||||||||| |||||||
Sbjct: 1 acccctactatgcgtaccagaactcaccgagcaatgtgtccctcaactacgccctgttct 60
Query: 335 cgccagagtcccaggatgtgattgacccaaacactggactggtttacactaacatgttcg 394
||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 61 cgccacagtctcaggatgtgattgacccaaacactggactggtttacactaacatgtttg 120
Query: 395 acgcccaggtcgattccatcttctttgcgctcatggctctgaacttcaagactttgaaga 454
| |||||||| |||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct: 121 atgcccaggttgattccatcttctttgcgctcatggctctgaacttcaaaactctgaaga 180
Query: 455 tcatgatcactgagtcagggtggccaaacaaaggggcggtcaaggagactggagccacac 514
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct: 181 tcatgatcactgagtcagggtggccaaacaaaggggcggccaaggagactggagccactc 240
Query: 515 cagacaatgctcagacctacaataccaatttgatacgccatgttgttaatgacagcggca 574
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 241 cagacaatgctcagacttacaataccaatttgatacgccatgttgttaatgacagtggca 300
Query: 575 caccggcgaaaccaggggaagagattgatgtctacatattttcattgttcaatgagaaca 634
| || ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 301 cgcctgcgaaaccaggggaagaaattgatgtctacatattttcattgttcaatgagaaca 360
Query: 635 ggaaacctggcatcgagtcggagaggaactggggactgttttttcctgataagagctcta 694
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaaacctggcattgagtcggagaggaactggggactgttttttcctgataagagctcta 420
Query: 695 tctacagccttgattggacgggccgaggcaatgtggatgtgatgactggagcaaacatta 754
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 421 tctacagccttgattggacgggccgaggcaatgtggatgttatgactggagcaaacatta 480
Query: 755 caagtgctaatggtacctg 773
||||||| |||||||||||
Sbjct: 481 caagtgcaaatggtacctg 499
>gb|CL190246.1|CL190246 104_408_10905953_116_32501_075 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10905953, DNA
sequence
Length = 657
Score = 700 bits (353), Expect = 0.0
Identities = 398/413 (96%)
Strand = Plus / Minus
Query: 9 cacctacatcaccgtcggcgccgaggtcaccgagagccccgccaacgtctccgccctcgt 68
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 413 cacctacatcaccgtcggcgccgaggtcaccgagagccccaccaacgtctccgccctcgt 354
Query: 69 cgtgccagccatgcgcaatgtgcacaccgcgctcaagaaggccggcctgcacaagaagat 128
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 353 cgtgcctgccatgcgcaatgtgcacaccgcactcaagaaggccggcctgcacaagaagat 294
Query: 129 caccatctccagcacccactcgctcgggatactgtcccggtcgttcccgccgtctgctgg 188
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 293 caccatctccagcacccactcgctcgggatactgtcacggtcgttcccgccgtctgctgg 234
Query: 189 ggcgttcaacagcagctacgcctacttcttgaagcctatgctccagttccttgtggagaa 248
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 233 ggcgttcaacagcagctacgcctacttcttgaagcctatgctcgagttccttgtggagaa 174
Query: 249 tcaggcaccgttcatggtggatttgtacccctactatgcgtaccagaactcgcggagcaa 308
|||||| ||||||||||||||||| |||||||||||||||||||||||||| | ||||||
Sbjct: 173 tcaggcgccgttcatggtggatttatacccctactatgcgtaccagaactcaccgagcaa 114
Query: 309 tgtgtccctcaactacgcgctgttctcgccagagtcccaggatgtgattgacccaaacac 368
|||||||||||||||||| |||||||||||| |||| |||||||||||||||||||||||
Sbjct: 113 tgtgtccctcaactacgccctgttctcgccacagtctcaggatgtgattgacccaaacac 54
Query: 369 tggactggtttacactaacatgttcgacgcccaggtcgattccatcttctttg 421
|||||||||||||||||||||||| || |||||||| ||||||||||||||||
Sbjct: 53 tggactggtttacactaacatgtttgatgcccaggttgattccatcttctttg 1
>gb|CW452973.1|CW452973 fsbb001f193m09f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f193m09, DNA
sequence
Length = 451
Score = 268 bits (135), Expect = 7e-070
Identities = 144/147 (97%)
Strand = Plus / Minus
Query: 9 cacctacatcaccgtcggcgccgaggtcaccgagagccccgccaacgtctccgccctcgt 68
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 148 cacctacatcaccgtcggcgccgaggtcaccgagagccccaccaacgtctccgccctcgt 89
Query: 69 cgtgccagccatgcgcaatgtgcacaccgcgctcaagaaggccggcctgcacaagaagat 128
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 88 cgtgcctgccatgcgcaatgtgcacaccgcactcaagaaggccggcctgcacaagaagat 29
Query: 129 caccatctccagcacccactcgctcgg 155
|||||||||||||||||||||||||||
Sbjct: 28 caccatctccagcacccactcgctcgg 2
>gb|CW173534.1|CW173534 104_585_11156899_116_36549_076 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11156899, DNA
sequence
Length = 667
Score = 202 bits (102), Expect = 3e-050
Identities = 108/110 (98%)
Strand = Plus / Minus
Query: 664 tggggactgttttttcctgataagagctctatctacagccttgattggacgggccgaggc 723
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 tggggactgttttttcctgataagagctctatctacagccttgattggacgggccgaggc 608
Query: 724 aatgtggatgtgatgactggagcaaacattacaagtgctaatggtacctg 773
||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct: 607 aatgtggatgttatgactggagcaaacattacaagtgcaaatggtacctg 558
>gb|BG102297.1|BG102297 RHIZ2_24_E11.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 550
Score = 107 bits (54), Expect = 2e-021
Identities = 57/58 (98%)
Strand = Plus / Plus
Query: 9 cacctacatcaccgtcggcgccgaggtcaccgagagccccgccaacgtctccgccctc 66
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 493 cacctacatcaccgtcggcgccgaggtcaccgagagccccaccaacgtctccgccctc 550
>gb|BG102078.1|BG102078 RHIZ2_24_E11.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 640
Score = 83.8 bits (42), Expect = 2e-014
Identities = 48/50 (96%)
Strand = Plus / Plus
Query: 724 aatgtggatgtgatgactggagcaaacattacaagtgctaatggtacctg 773
||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct: 1 aatgtggatgttatgactggagcaaacattacaagtgcaaatggtacctg 50
>gb|DR831561.1|DR831561 MT14 Sorghum bicolor greenbug-responsive cDNA library Sorghum
bicolor cDNA 5', mRNA sequence
Length = 112
Score = 44.1 bits (22), Expect = 0.019
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 765 tggtacctgcccgggcggccgc 786
||||||||||||||||||||||
Sbjct: 23 tggtacctgcccgggcggccgc 2
>gb|CW027519.1|CW027519 104_254_10498564_116_30396 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10498564, DNA
sequence
Length = 775
Score = 42.1 bits (21), Expect = 0.076
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 379 tacactaacatgttcgacgcccaggtcga 407
||||| |||||||||||||| ||||||||
Sbjct: 428 tacaccaacatgttcgacgcgcaggtcga 400
>gb|CW061654.1|CW061654 104_305_10520517_114_30152 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10520517, DNA
sequence
Length = 454
Score = 42.1 bits (21), Expect = 0.076
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 379 tacactaacatgttcgacgcccaggtcga 407
||||| |||||||||||||| ||||||||
Sbjct: 270 tacaccaacatgttcgacgcgcaggtcga 242
>gb|CW280421.1|CW280421 104_755_11407611_116_35443_006 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11407611, DNA
sequence
Length = 433
Score = 42.1 bits (21), Expect = 0.076
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 379 tacactaacatgttcgacgcccaggtcga 407
||||| |||||||||||||| ||||||||
Sbjct: 416 tacaccaacatgttcgacgcgcaggtcga 388
>gb|CW280422.1|CW280422 104_755_11407611_148_35447_006 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11407611, DNA
sequence
Length = 671
Score = 42.1 bits (21), Expect = 0.076
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 379 tacactaacatgttcgacgcccaggtcga 407
||||| |||||||||||||| ||||||||
Sbjct: 337 tacaccaacatgttcgacgcgcaggtcga 365
>gb|CW323755.1|CW323755 104_818_11476798_148_35909_095 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11476798, DNA
sequence
Length = 684
Score = 42.1 bits (21), Expect = 0.076
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 379 tacactaacatgttcgacgcccaggtcga 407
||||| |||||||||||||| ||||||||
Sbjct: 109 tacaccaacatgttcgacgcgcaggtcga 137
>gb|BE598996.1|BE598996 PI1_86_B02.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 683
Score = 42.1 bits (21), Expect = 0.076
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 379 tacactaacatgttcgacgcccaggtcga 407
||||| |||||||||||||| ||||||||
Sbjct: 3 tacaccaacatgttcgacgcgcaggtcga 31
>gb|CF675675.1|CF675675 RUBISCO Subtractive cDNA library from sorghum infested by greenbug
aphids Sorghum bicolor cDNA clone RUBISCO similar to
Ribulose 1,5-biphosphate carboxylase, mRNA sequence
Length = 638
Score = 42.1 bits (21), Expect = 0.076
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 766 ggtacctgcccgggcggccgc 786
|||||||||||||||||||||
Sbjct: 245 ggtacctgcccgggcggccgc 225
>gb|CW150042.1|CW150042 104_549_11142820_116_36302_010 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11142820, DNA
sequence
Length = 717
Score = 40.1 bits (20), Expect = 0.30
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 669 actgttttttcctgataaga 688
||||||||||||||||||||
Sbjct: 147 actgttttttcctgataaga 166
>gb|CF675626.1|CF675626 THAU2 Subtractive cDNA library from sorghum infested by greenbug
aphids Sorghum bicolor cDNA clone THAU2 similar to
Thaumatin-like protein, mRNA sequence
Length = 747
Score = 40.1 bits (20), Expect = 0.30
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 767 gtacctgcccgggcggccgc 786
||||||||||||||||||||
Sbjct: 223 gtacctgcccgggcggccgc 204
Score = 40.1 bits (20), Expect = 0.30
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 767 gtacctgcccgggcggccgc 786
||||||||||||||||||||
Sbjct: 192 gtacctgcccgggcggccgc 211
>gb|DV162795.1|DV162795 P1-M15 Sorghum bicolor greenbug-responsive cDNA library Sorghum
bicolor cDNA 5', mRNA sequence
Length = 282
Score = 40.1 bits (20), Expect = 0.30
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 767 gtacctgcccgggcggccgc 786
||||||||||||||||||||
Sbjct: 51 gtacctgcccgggcggccgc 32
>gb|DV162819.1|DV162819 P5-B11 Sorghum bicolor greenbug-responsive cDNA library Sorghum
bicolor cDNA 5', mRNA sequence
Length = 234
Score = 40.1 bits (20), Expect = 0.30
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 767 gtacctgcccgggcggccgc 786
||||||||||||||||||||
Sbjct: 65 gtacctgcccgggcggccgc 84
>gb|DV162820.1|DV162820 P3-G6 Sorghum bicolor greenbug-responsive cDNA library Sorghum
bicolor cDNA 5', mRNA sequence
Length = 223
Score = 40.1 bits (20), Expect = 0.30
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 767 gtacctgcccgggcggccgc 786
||||||||||||||||||||
Sbjct: 100 gtacctgcccgggcggccgc 119
>gb|DV162819.2|DV162819 P5-B11 Sorghum bicolor greenbug-responsive cDNA library Sorghum
bicolor cDNA 5', mRNA sequence
Length = 172
Score = 40.1 bits (20), Expect = 0.30
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 767 gtacctgcccgggcggccgc 786
||||||||||||||||||||
Sbjct: 2 gtacctgcccgggcggccgc 21
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 192,058
Number of Sequences: 832831
Number of extensions: 192058
Number of successful extensions: 53201
Number of sequences better than 0.5: 21
Number of HSP's better than 0.5 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 53178
Number of HSP's gapped (non-prelim): 23
length of query: 786
length of database: 491,359,669
effective HSP length: 20
effective length of query: 766
effective length of database: 474,703,049
effective search space: 363622535534
effective search space used: 363622535534
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)