BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3562100.2.1
(759 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BG101804.1|BG101804 RHIZ2_22_F05.g1_A003 Rhizome2 (RHIZ2... 406 e-111
gb|AW283881.1|AW283881 LG1_282_A07.g1_A002 Light Grown 1 (L... 353 1e-095
gb|BG159361.1|BG159361 OV2_6_G12.g1_A002 Ovary 2 (OV2) Sorg... 230 1e-058
gb|CN139974.1|CN139974 OX1_33_F07.b1_A002 Oxidatively-stres... 198 5e-049
gb|CW444206.1|CW444206 fsbb001f164l01k0 Sorghum methylation... 186 2e-045
gb|CW410942.1|CW410942 fsbb001f105o10k0 Sorghum methylation... 184 8e-045
gb|BM328755.1|BM328755 PIC1_26_B07.g1_A002 Pathogen-infecte... 178 5e-043
gb|BG465944.1|BG465944 RHIZ2_46_E09.g1_A003 Rhizome2 (RHIZ2... 145 7e-033
gb|CD228545.1|CD228545 CCC1_8_A06.b1_A007 Callus culture/ce... 145 7e-033
gb|CD228570.1|CD228570 CCC1_8_A06.g1_A007 Callus culture/ce... 96 6e-018
gb|CW070747.1|CW070747 104_322_10590981_116_30543 Sorghum m... 90 3e-016
gb|CW444205.1|CW444205 fsbb001f164l01f0 Sorghum methylation... 90 3e-016
gb|BM324254.1|BM324254 PIC1_26_B07.b1_A002 Pathogen-infecte... 70 3e-010
gb|CW438004.1|CW438004 fsbb001f155g11f0 Sorghum methylation... 68 1e-009
gb|BG159352.1|BG159352 OV2_6_F12.g1_A002 Ovary 2 (OV2) Sorg... 66 5e-009
gb|CL161950.1|CL161950 104_353_10806077_114_31828_365 Sorgh... 40 0.29
gb|CL161951.1|CL161951 104_353_10806077_116_31829_365 Sorgh... 40 0.29
gb|CW370097.1|CW370097 fsbb001f044n13f0 Sorghum methylation... 40 0.29
>gb|BG101804.1|BG101804 RHIZ2_22_F05.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 290
Score = 406 bits (205), Expect = e-111
Identities = 265/286 (92%), Gaps = 8/286 (2%)
Strand = Plus / Plus
Query: 121 tggttcttcagacagacaaaggtgatgaagaattgtgtagtgtttatgtgccaaccaatc 180
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 1 tggttcttcagacagacaaaggtgatgaagaattgtgtagtgtttatgtcccaaccaatc 60
Query: 181 atttatatattggtgacatctttttggtaaactccgccgaaattataaggcccaatttgt 240
||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct: 61 atttatatattggagacatctttttggtaaactccgctgaaattattaggcccaatttgt 120
Query: 241 ctattcgtgaaggcatagaaataattgtttcaggaggaatgactatgccgcaggtgatca 300
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 121 ccattcgtgaaggcatagaaataattgtttcaggaggaatgactatgccacaggtgatca 180
Query: 301 tgtcactggaaccaacacctcggaagagccagaacgtccgtttagacagagtgaggacag 360
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 181 cgtcactggaaccaacacctcggaagagccagaacatccgtttagacagagtgaggaa-- 238
Query: 361 tatgactgtatgaggcatgcatgaaagtgatgggtgtttcaggatg 406
||||||||||||| || |||| | ||||||||||||||||
Sbjct: 239 ------tgtatgaggcatgaatcaaagcgttgggtgtttcaggatg 278
>gb|AW283881.1|AW283881 LG1_282_A07.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 446
Score = 353 bits (178), Expect = 1e-095
Identities = 319/361 (88%), Gaps = 20/361 (5%)
Strand = Plus / Plus
Query: 203 tttggtaaactccgccgaaattataaggcccaatttgtctattcgtgaaggcatagaaat 262
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct: 1 tttggtaaactccgccgaaattattaggcccaatttgtccattcgtgaaggcatagaaat 60
Query: 263 aattgtttcaggaggaatgactatgccgcaggtgatcatgtcactggaaccaacacctcg 322
||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct: 61 aattgtttcaggaggaatgactatgccacaggtgatcacgtcactggaaccaacacctcg 120
Query: 323 gaagagccagaacgtccgtttagacagagtgaggacagtatgactgtatgaggcatgcat 382
||||||||||||| ||||||||||||||||||| |||||||||||||||| ||
Sbjct: 121 gaagagccagaacatccgtttagacagagtgag--------gactgtatgaggcatgaat 172
Query: 383 gaaagtgatgggtgtttcaggatggcttg-ttggttatggattcaaagctggggcatgga 441
||||| | |||||||||||||||| ||| ||||||| ||||||||||||||||||| |
Sbjct: 173 gaaagcgttgggtgtttcaggatgaattgtttggttaccgattcaaagctggggcatgaa 232
Query: 442 gcttgagac-aatcaatttgtagattgcattcagaact----tgcgcattattggcagat 496
|| |||| | ||||| |||||||||||||||||||||| || |||||| ||||
Sbjct: 233 gcatgaggcaaatcagtttgtagattgcattcagaactcgggtgtgcatta----gagat 288
Query: 497 acatgacaacctcgcactaacttgcgttg-caatcagttggtgacacgaaaattgcagct 555
|||||||||||| ||||| ||||||||| ||||| ||||||||||| ||||||||||||
Sbjct: 289 acatgacaacct-gcactgtcttgcgttgccaatcggttggtgacacaaaaattgcagct 347
Query: 556 c 556
|
Sbjct: 348 c 348
Score = 58.0 bits (29), Expect = 1e-006
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 624 tgaacgtgattcaatgctgcatctaccagtgctacttgtgt 664
|||||| |||||||||| ||||||||||||| |||||||||
Sbjct: 406 tgaacgcgattcaatgcagcatctaccagtgttacttgtgt 446
>gb|BG159361.1|BG159361 OV2_6_G12.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA sequence
Length = 486
Score = 230 bits (116), Expect = 1e-058
Identities = 215/248 (86%)
Strand = Plus / Plus
Query: 51 ttcaaagaagtagcaatcattagtcatccccgtgttggtgaatatgcatttggattcata 110
||||||||||| ||||| ||| ||||||| || ||||||||||||||||||||||||||
Sbjct: 30 ttcaaagaagttgcaataattcgtcatccacgaattggtgaatatgcatttggattcata 89
Query: 111 acatcaaccatggttcttcagacagacaaaggtgatgaagaattgtgtagtgtttatgtg 170
|||||||| |||| |||||||| |||||||| ||||||||| |||||||||| ||||||
Sbjct: 90 acatcaacggtggtccttcagactgacaaaggcgatgaagaactgtgtagtgtgtatgtg 149
Query: 171 ccaaccaatcatttatatattggtgacatctttttggtaaactccgccgaaattataagg 230
||||| |||||| |||| || |||||||| ||| |||| ||||| | || ||||||||
Sbjct: 150 ccaacaaatcatctatacatcggtgacatatttctggtgaactctgaggagattataaga 209
Query: 231 cccaatttgtctattcgtgaaggcatagaaataattgtttcaggaggaatgactatgccg 290
|| ||||| || ||||| ||||| || |||||||||||||||||||||||||| |||||
Sbjct: 210 cctaatttatccattcgggaaggaattgaaataattgtttcaggaggaatgaccatgcct 269
Query: 291 caggtgat 298
||||||||
Sbjct: 270 caggtgat 277
>gb|CN139974.1|CN139974 OX1_33_F07.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_33_F07_A002 3', mRNA sequence
Length = 608
Score = 198 bits (100), Expect = 5e-049
Identities = 211/248 (85%)
Strand = Plus / Plus
Query: 51 ttcaaagaagtagcaatcattagtcatccccgtgttggtgaatatgcatttggattcata 110
||||||||||| ||||| ||| |||||||||| |||| ||||| ||||| |||||||||
Sbjct: 104 ttcaaagaagttgcaataattcgtcatccccgaattggcgaatacgcattgggattcata 163
Query: 111 acatcaaccatggttcttcagacagacaaaggtgatgaagaattgtgtagtgtttatgtg 170
|||||||| |||| |||||||| |||||||| ||||||||| |||||||||| |||||
Sbjct: 164 acatcaacggtggtccttcagactgacaaaggcgatgaagaactgtgtagtgtgtatgtc 223
Query: 171 ccaaccaatcatttatatattggtgacatctttttggtaaactccgccgaaattataagg 230
||||| |||||| |||| || |||||||| ||| |||| |||| | || ||||||||
Sbjct: 224 ccaacaaatcatctatacatcggtgacatatttctggtgaactgtgaggagattataaga 283
Query: 231 cccaatttgtctattcgtgaaggcatagaaataattgtttcaggaggaatgactatgccg 290
|| ||||| || ||||| ||||| || |||||||||||||||||||||||||| |||||
Sbjct: 284 cctaatttatccattcgggaaggaattgaaataattgtttcaggaggaatgaccatgcct 343
Query: 291 caggtgat 298
||||||||
Sbjct: 344 caggtgat 351
>gb|CW444206.1|CW444206 fsbb001f164l01k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f164l01, DNA
sequence
Length = 786
Score = 186 bits (94), Expect = 2e-045
Identities = 133/147 (90%), Gaps = 8/147 (5%)
Strand = Plus / Plus
Query: 257 agaaataattgtttcaggaggaatgactatgccgcaggtgatcatgtcactggaaccaac 316
||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct: 375 agaaataattgtttcaggaggaatgactatgccacaggtgatcacgtcactggaaccaac 434
Query: 317 acctcggaagagccagaacgtccgtttagacagagtgaggacagtatgactgtatgaggc 376
||||||||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct: 435 acctcggaagagccagaacatccgtttagacagagtgag--------gactgtatgaggc 486
Query: 377 atgcatgaaagtgatgggtgtttcagg 403
||| ||||||| | |||||||||||||
Sbjct: 487 atgaatgaaagcgttgggtgtttcagg 513
Score = 44.1 bits (22), Expect = 0.019
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 412 ttggttatggattcaaagctggggcatgga 441
||||||| |||||||||||||||||||||
Sbjct: 750 ttggttaccgattcaaagctggggcatgga 779
>gb|CW410942.1|CW410942 fsbb001f105o10k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f105o10, DNA
sequence
Length = 747
Score = 184 bits (93), Expect = 8e-045
Identities = 105/109 (96%)
Strand = Plus / Plus
Query: 257 agaaataattgtttcaggaggaatgactatgccgcaggtgatcatgtcactggaaccaac 316
||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct: 226 agaaataattgtttcaggaggaatgactatgccacaggtgatcacgtcactggaaccaac 285
Query: 317 acctcggaagagccagaacgtccgtttagacagagtgaggacagtatga 365
||||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct: 286 acctcggaagagccagaacatccgtttagacagagtgaggactgtatga 334
Score = 71.9 bits (36), Expect = 8e-011
Identities = 61/68 (89%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 412 ttggttatggattcaaagctggggcatggagcttgagacaa-tcaatttgtagattgcat 470
||||||| ||||||||||||||||||| ||| |||| ||| ||| ||||||||||||||
Sbjct: 601 ttggttaccgattcaaagctggggcatgaagcatgaggcaaatcagtttgtagattgcat 660
Query: 471 tcagaact 478
||||||||
Sbjct: 661 tcagaact 668
Score = 65.9 bits (33), Expect = 5e-009
Identities = 59/65 (90%), Gaps = 2/65 (3%)
Strand = Plus / Plus
Query: 493 agatacatgacaacctcgcactaacttgcgttgc-aatcagttggtgacacgaaaattgc 551
|||||||||||||||| ||||| |||||||||| |||| ||||||||||| ||||||||
Sbjct: 683 agatacatgacaacct-gcactgtcttgcgttgccaatcggttggtgacacaaaaattgc 741
Query: 552 agctc 556
|||||
Sbjct: 742 agctc 746
>gb|BM328755.1|BM328755 PIC1_26_B07.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 574
Score = 178 bits (90), Expect = 5e-043
Identities = 171/198 (86%)
Strand = Plus / Plus
Query: 101 tggattcataacatcaaccatggttcttcagacagacaaaggtgatgaagaattgtgtag 160
|||||||||||||||||| |||| |||||||| |||||||| ||||||||| |||||||
Sbjct: 1 tggattcataacatcaacggtggtccttcagactgacaaaggcgatgaagaactgtgtag 60
Query: 161 tgtttatgtgccaaccaatcatttatatattggtgacatctttttggtaaactccgccga 220
||| ||||||||||| |||||| |||| || |||||||| ||| |||| ||||| | ||
Sbjct: 61 tgtgtatgtgccaacaaatcatctatacatcggtgacatatttctggtgaactctgagga 120
Query: 221 aattataaggcccaatttgtctattcgtgaaggcatagaaataattgtttcaggaggaat 280
|||||||| || ||||| || ||||| ||||| || |||||||||||||||||||||||
Sbjct: 121 gattataagacctaatttatccattcgggaaggaattgaaataattgtttcaggaggaat 180
Query: 281 gactatgccgcaggtgat 298
||| ||||| ||||||||
Sbjct: 181 gaccatgcctcaggtgat 198
>gb|BG465944.1|BG465944 RHIZ2_46_E09.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 602
Score = 145 bits (73), Expect = 7e-033
Identities = 148/173 (85%)
Strand = Plus / Plus
Query: 126 cttcagacagacaaaggtgatgaagaattgtgtagtgtttatgtgccaaccaatcattta 185
|||||||| |||||||| ||||||||| |||||||||| ||||||||||| |||||| ||
Sbjct: 5 cttcagactgacaaaggcgatgaagaactgtgtagtgtgtatgtgccaacaaatcatcta 64
Query: 186 tatattggtgacatctttttggtaaactccgccgaaattataaggcccaatttgtctatt 245
|| || |||||||| ||| |||| ||||| | || || ||||| || ||||| || |||
Sbjct: 65 tacatcggtgacatatttctggtgaactctgaggagatcataagacctaatttatccatt 124
Query: 246 cgtgaaggcatagaaataattgtttcaggaggaatgactatgccgcaggtgat 298
|| ||||| || |||||||||||||||||||||||||| ||||| ||||||||
Sbjct: 125 cgggaaggaattgaaataattgtttcaggaggaatgaccatgcctcaggtgat 177
>gb|CD228545.1|CD228545 CCC1_8_A06.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_8_A06_A007 3', mRNA sequence
Length = 652
Score = 145 bits (73), Expect = 7e-033
Identities = 148/173 (85%)
Strand = Plus / Plus
Query: 126 cttcagacagacaaaggtgatgaagaattgtgtagtgtttatgtgccaaccaatcattta 185
|||||||| |||||||| ||||||||| |||||||||| ||||||||||| |||||| ||
Sbjct: 3 cttcagactgacaaaggcgatgaagaactgtgtagtgtgtatgtgccaacaaatcatcta 62
Query: 186 tatattggtgacatctttttggtaaactccgccgaaattataaggcccaatttgtctatt 245
|| || |||||||| ||| |||| |||| | || |||||||| || ||||| || |||
Sbjct: 63 tacatcggtgacatatttctggtggactctgaggagattataagacctaatttatccatt 122
Query: 246 cgtgaaggcatagaaataattgtttcaggaggaatgactatgccgcaggtgat 298
|| ||||| || |||||||||||||||||||||||||| ||||| ||||||||
Sbjct: 123 cgggaaggaattgaaataattgtttcaggaggaatgaccatgcctcaggtgat 175
>gb|CD228570.1|CD228570 CCC1_8_A06.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_8_A06_A007 5', mRNA sequence
Length = 640
Score = 95.6 bits (48), Expect = 6e-018
Identities = 78/88 (88%)
Strand = Plus / Plus
Query: 51 ttcaaagaagtagcaatcattagtcatccccgtgttggtgaatatgcatttggattcata 110
||||||||||| ||||| ||| ||||||| || ||||||||||||||||||||||||||
Sbjct: 553 ttcaaagaagttgcaataattcgtcatccacgaattggtgaatatgcatttggattcata 612
Query: 111 acatcaaccatggttcttcagacagaca 138
|||||||| |||| |||||||| ||||
Sbjct: 613 acatcaacggtggtccttcagactgaca 640
>gb|CW070747.1|CW070747 104_322_10590981_116_30543 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10590981, DNA
sequence
Length = 656
Score = 89.7 bits (45), Expect = 3e-016
Identities = 105/125 (84%)
Strand = Plus / Plus
Query: 129 cagacagacaaaggtgatgaagaattgtgtagtgtttatgtgccaaccaatcatttatat 188
||||| |||||||| ||||||||| |||||||||| ||||||||||| |||||| ||||
Sbjct: 396 cagactgacaaaggcgatgaagaactgtgtagtgtgtatgtgccaacaaatcatctatac 455
Query: 189 attggtgacatctttttggtaaactccgccgaaattataaggcccaatttgtctattcgt 248
|| |||||||| ||| |||| ||||| | || |||||||| || ||||| || |||||
Sbjct: 456 atcggtgacatatttctggtgaactctgaggagattataagacctaatttatccattcgg 515
Query: 249 gaagg 253
|||||
Sbjct: 516 gaagg 520
Score = 89.7 bits (45), Expect = 3e-016
Identities = 72/81 (88%)
Strand = Plus / Plus
Query: 51 ttcaaagaagtagcaatcattagtcatccccgtgttggtgaatatgcatttggattcata 110
||||||||||| ||||| ||| ||||||| || ||||||||||||||||||||||||||
Sbjct: 75 ttcaaagaagttgcaataattcgtcatccacgaattggtgaatatgcatttggattcata 134
Query: 111 acatcaaccatggttcttcag 131
|||||||| |||| ||||||
Sbjct: 135 acatcaacggtggtccttcag 155
>gb|CW444205.1|CW444205 fsbb001f164l01f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f164l01, DNA
sequence
Length = 729
Score = 89.7 bits (45), Expect = 3e-016
Identities = 128/151 (84%), Gaps = 11/151 (7%)
Strand = Plus / Minus
Query: 412 ttggttatggattcaaagctggggcatggagcttgagacaa-tcaatttgtagattgcat 470
||||||| ||||||||||||||||||| ||| |||| ||| ||| ||||||||||||||
Sbjct: 531 ttggttaccgattcaaagctggggcatgaagcatgaggcaaatcagtttgtagattgcat 472
Query: 471 tcagaact----tgcgcattattggcagatacatgacaacctcgcactaacttgcgttg- 525
|||||||| || |||||| |||||||||||||||| ||||| |||||||||
Sbjct: 471 tcagaactcgggtgtgcatta----gagatacatgacaacct-gcactgtcttgcgttgc 417
Query: 526 caatcagttggtgacacgaaaattgcagctc 556
||||| ||||||||||| |||||||||||||
Sbjct: 416 caatcggttggtgacacaaaaattgcagctc 386
Score = 65.9 bits (33), Expect = 5e-009
Identities = 42/45 (93%)
Strand = Plus / Minus
Query: 624 tgaacgtgattcaatgctgcatctaccagtgctacttgtgtatat 668
|||||| |||||||||| ||||||||||||| |||||||||||||
Sbjct: 328 tgaacgcgattcaatgcagcatctaccagtgttacttgtgtatat 284
>gb|BM324254.1|BM324254 PIC1_26_B07.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 558
Score = 69.9 bits (35), Expect = 3e-010
Identities = 56/63 (88%)
Strand = Plus / Plus
Query: 51 ttcaaagaagtagcaatcattagtcatccccgtgttggtgaatatgcatttggattcata 110
|||| |||||| ||||| ||| ||||||| || ||||||||||||||||||||||||||
Sbjct: 496 ttcagagaagttgcaataattcgtcatccacgaattggtgaatatgcatttggattcata 555
Query: 111 aca 113
|||
Sbjct: 556 aca 558
>gb|CW438004.1|CW438004 fsbb001f155g11f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f155g11, DNA
sequence
Length = 766
Score = 67.9 bits (34), Expect = 1e-009
Identities = 40/42 (95%)
Strand = Plus / Plus
Query: 257 agaaataattgtttcaggaggaatgactatgccgcaggtgat 298
||||||||||||||||||||||||||| ||||| ||||||||
Sbjct: 107 agaaataattgtttcaggaggaatgaccatgcctcaggtgat 148
>gb|BG159352.1|BG159352 OV2_6_F12.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA sequence
Length = 244
Score = 65.9 bits (33), Expect = 5e-009
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 258 gaaataattgtttcaggaggaatgactatgccgcaggtgat 298
|||||||||||||||||||||||||| ||||| ||||||||
Sbjct: 8 gaaataattgtttcaggaggaatgaccatgcctcaggtgat 48
>gb|CL161950.1|CL161950 104_353_10806077_114_31828_365 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10806077, DNA
sequence
Length = 709
Score = 40.1 bits (20), Expect = 0.29
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 86 tggtgaatatgcatttggat 105
||||||||||||||||||||
Sbjct: 459 tggtgaatatgcatttggat 478
>gb|CL161951.1|CL161951 104_353_10806077_116_31829_365 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10806077, DNA
sequence
Length = 714
Score = 40.1 bits (20), Expect = 0.29
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 86 tggtgaatatgcatttggat 105
||||||||||||||||||||
Sbjct: 704 tggtgaatatgcatttggat 685
>gb|CW370097.1|CW370097 fsbb001f044n13f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f044n13, DNA
sequence
Length = 726
Score = 40.1 bits (20), Expect = 0.29
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 86 tggtgaatatgcatttggat 105
||||||||||||||||||||
Sbjct: 655 tggtgaatatgcatttggat 636
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 170,295
Number of Sequences: 832831
Number of extensions: 170295
Number of successful extensions: 46812
Number of sequences better than 0.5: 18
Number of HSP's better than 0.5 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 46772
Number of HSP's gapped (non-prelim): 32
length of query: 759
length of database: 491,359,669
effective HSP length: 20
effective length of query: 739
effective length of database: 474,703,049
effective search space: 350805553211
effective search space used: 350805553211
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)