BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3536697.2.1
(651 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BG047632.1|BG047632 OV1_26_C08.b1_A002 Ovary 1 (OV1) Sor... 579 e-163
gb|CN128125.1|CN128125 RHOH1_27_E03.b1_A002 Acid- and alkal... 579 e-163
gb|CN128193.1|CN128193 RHOH1_27_E03.g1_A002 Acid- and alkal... 579 e-163
gb|CX623197.1|CX623197 GABR1_68_F11.b1_A002 GA- or brassino... 579 e-163
gb|CX611045.1|CX611045 ANR1_22_G07.b1_A002 Anaerobic roots ... 571 e-161
gb|CX622843.1|CX622843 GABR1_66_G03.b1_A002 GA- or brassino... 547 e-154
gb|BG047988.1|BG047988 OV1_26_C08.g1_A002 Ovary 1 (OV1) Sor... 521 e-146
gb|CN125323.1|CN125323 RHOH1_10_H10.b1_A002 Acid- and alkal... 385 e-105
gb|CD225257.1|CD225257 CCC1_39_H04.b1_A007 Callus culture/c... 379 e-103
gb|CX615688.1|CX615688 GABR1_22_A05.b1_A002 GA- or brassino... 369 e-100
gb|BG103207.1|BG103207 RHIZ2_19_E05.g1_A003 Rhizome2 (RHIZ2... 339 2e-091
gb|CD213228.1|CD213228 HS1_29_A02.b1_A012 Heat-shocked seed... 337 8e-091
gb|BG464726.1|BG464726 EM1_33_C05.g1_A002 Embryo 1 (EM1) So... 305 3e-081
gb|BE592429.1|BE592429 WS1_94_F06.g1_A002 Water-stressed 1 ... 262 4e-068
gb|BE358947.1|BE358947 DG1_37_C03.b1_A002 Dark Grown 1 (DG1... 240 1e-061
gb|BE598394.1|BE598394 PI1_81_A12.g1_A002 Pathogen induced ... 240 1e-061
gb|BG947739.1|BG947739 IP1_8_E06.g1_A002 Immature pannicle ... 240 1e-061
gb|BM326925.1|BM326925 PIC1_4_G12.g1_A002 Pathogen-infected... 240 1e-061
gb|CX612233.1|CX612233 GABR1_1_F11.b1_A002 GA- or brassinol... 240 1e-061
gb|BE358980.1|BE358980 DG1_37_C03.g1_A002 Dark Grown 1 (DG1... 224 8e-057
gb|BG103143.1|BG103143 RHIZ2_18_F09.g1_A003 Rhizome2 (RHIZ2... 224 8e-057
gb|BE358837.1|BE358837 DG1_32_C04.g1_A002 Dark Grown 1 (DG1... 208 5e-052
gb|BE592553.1|BE592553 WS1_94_F06.b1_A002 Water-stressed 1 ... 184 7e-045
gb|BM328668.1|BM328668 PIC1_25_A12.g1_A002 Pathogen-infecte... 184 7e-045
gb|AW564373.1|AW564373 LG1_290_H10.b1_A002 Light Grown 1 (L... 182 3e-044
gb|BE356139.1|BE356139 DG1_122_E02.g1_A002 Dark Grown 1 (DG... 180 1e-043
gb|AW680120.1|AW680120 WS1_4_H09.g1_A002 Water-stressed 1 (... 153 2e-035
gb|BE598726.1|BE598726 PI1_81_A12.b1_A002 Pathogen induced ... 153 2e-035
gb|BG933568.1|BG933568 WS1_4_H09.b1_A002 Water-stressed 1 (... 153 2e-035
gb|CB929269.1|CB929269 ABA1_41_B05.b1_A012 Abscisic acid-tr... 151 9e-035
gb|BG559870.1|BG559870 RHIZ2_74_F04.g1_A003 Rhizome2 (RHIZ2... 143 2e-032
gb|AW922728.1|AW922728 DG1_45_A08.g1_A002 Dark Grown 1 (DG1... 137 1e-030
gb|CW177065.1|CW177065 104_590_11158824_116_36593_092 Sorgh... 131 9e-029
gb|BZ332079.1|BZ332079 hx25c04.b1 WGS-SbicolorF (JM107 adap... 129 3e-028
gb|CW155314.1|CW155314 104_557_11146073_148_36360_067 Sorgh... 127 1e-027
gb|BM328675.1|BM328675 PIC1_25_B12.g1_A002 Pathogen-infecte... 125 5e-027
gb|BG052710.1|BG052710 RHIZ2_28_G06.g1_A003 Rhizome2 (RHIZ2... 117 1e-024
gb|BM330970.1|BM330970 PIC1_67_H03.g1_A002 Pathogen-infecte... 115 5e-024
gb|CF772893.1|CF772893 DSBF1_40_F07.g1_A010 Drought-stresse... 115 5e-024
gb|CF426874.1|CF426874 PH1_2_E09.b1_A002 Phosphorous-defici... 101 8e-020
gb|AW923940.1|AW923940 WS1_31_D05.b1_A002 Water-stressed 1 ... 100 3e-019
gb|CW241293.1|CW241293 104_700_11218687_148_37542_026 Sorgh... 94 2e-017
gb|BZ332081.1|BZ332081 hx25c05.b1 WGS-SbicolorF (JM107 adap... 92 8e-017
gb|CX612323.1|CX612323 GABR1_1_F11.g1_A002 GA- or brassinol... 88 1e-015
gb|BG103104.1|BG103104 RHIZ2_18_C01.g1_A003 Rhizome2 (RHIZ2... 86 5e-015
gb|CW241292.1|CW241292 104_700_11218687_116_37545_026 Sorgh... 82 7e-014
gb|BZ337599.1|BZ337599 ia89f08.g1 WGS-SbicolorF (JM107 adap... 64 2e-008
gb|CW264924.1|CW264924 104_734_11231578_148_35262_047 Sorgh... 54 2e-005
gb|CN149962.1|CN149962 WOUND1_66_B07.b1_A002 Wounded leaves... 52 7e-005
gb|BI098154.1|BI098154 IP1_32_G07.g1_A002 Immature pannicle... 44 0.016
gb|BI098163.1|BI098163 IP1_32_H07.g1_A002 Immature pannicle... 44 0.016
gb|BM330485.1|BM330485 PIC1_52_F06.g1_A002 Pathogen-infecte... 44 0.016
gb|CD424899.1|CD424899 SA1_9_C07.b1_A002 Salicylic acid-tre... 44 0.016
gb|CD429345.1|CD429345 ETH1_4_B06.b1_A002 Ethylene-treated ... 42 0.063
gb|CW180649.1|CW180649 104_595_11163064_148_36646_060 Sorgh... 40 0.25
>gb|BG047632.1|BG047632 OV1_26_C08.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 601
Score = 579 bits (292), Expect = e-163
Identities = 402/435 (92%), Gaps = 4/435 (0%)
Strand = Plus / Plus
Query: 6 gttgctcaggcgctgaggaaggagcctttgacagtctatggtgatggcaagcagactagg 65
||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||
Sbjct: 120 gttgctcaggcgctgaggaaggagcctttgacagtttatggcgatggcaaacagactagg 179
Query: 66 agctttcaatatgtctcagatttggtggaagggctgatgaagctcatggaaggggagcac 125
||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 180 agctttcaatacgtatcagatttggtggaagggctgatgaagctcatggaaggggatcac 239
Query: 126 attgggccgttcaacctcggcaaccctggagaattcagcatgctggagctggctaaggtg 185
||||| || ||||||||||| || ||||||||||||| ||||||||||||||||||||||
Sbjct: 240 attggaccattcaacctcggtaatcctggagaattcaccatgctggagctggctaaggtg 299
Query: 186 gtccaggacaccatcgacccagaggcgcacatcgagttccgtccgaacaccgcagatgat 245
|| ||||||||||||||||||||||||| ||||||||||||||| ||||| ||||| |||
Sbjct: 300 gttcaggacaccatcgacccagaggcgcgcatcgagttccgtccaaacactgcagacgat 359
Query: 246 ccgcacaagcgcaagcctgacatcagccgcgcgaaagagctcctcggctgggagcccaag 305
|| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct: 360 ccacacaagcgcaagcctgacatcagccgcgcaaaagagctccttggctgggagcccaag 419
Query: 306 gttcccctccgtgagggccttccccgcatggtcactgacttccgcaaacgtatcttcggg 365
|||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 420 gttccccttcgtgagggtcttcctcgcatggtcactgacttccgcaaacgtatcttcggg 479
Query: 366 gaccaggaagggtccaccgagtcagctggtggcctttcttaagtgctcaaaacttgtt-g 424
||||| | || ||||| ||| |||||||||||||||||| ||| ||| |||||||| |
Sbjct: 480 gaccaaggagaatccactgaggcagctggtggcctttctt-agtcctc--aacttgttgg 536
Query: 425 aagtgacacgtttgt 439
|||||||||||||||
Sbjct: 537 aagtgacacgtttgt 551
>gb|CN128125.1|CN128125 RHOH1_27_E03.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_27_E03_A002 3', mRNA sequence
Length = 757
Score = 579 bits (292), Expect = e-163
Identities = 402/435 (92%), Gaps = 4/435 (0%)
Strand = Plus / Plus
Query: 6 gttgctcaggcgctgaggaaggagcctttgacagtctatggtgatggcaagcagactagg 65
||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||
Sbjct: 78 gttgctcaggcgctgaggaaggagcctttgacagtttatggcgatggcaaacagactagg 137
Query: 66 agctttcaatatgtctcagatttggtggaagggctgatgaagctcatggaaggggagcac 125
||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 138 agctttcaatacgtatcagatttggtggaagggctgatgaagctcatggaaggggatcac 197
Query: 126 attgggccgttcaacctcggcaaccctggagaattcagcatgctggagctggctaaggtg 185
||||| || ||||||||||| || ||||||||||||| ||||||||||||||||||||||
Sbjct: 198 attggaccattcaacctcggtaatcctggagaattcaccatgctggagctggctaaggtg 257
Query: 186 gtccaggacaccatcgacccagaggcgcacatcgagttccgtccgaacaccgcagatgat 245
|| ||||||||||||||||||||||||| ||||||||||||||| ||||| ||||| |||
Sbjct: 258 gttcaggacaccatcgacccagaggcgcgcatcgagttccgtccaaacactgcagacgat 317
Query: 246 ccgcacaagcgcaagcctgacatcagccgcgcgaaagagctcctcggctgggagcccaag 305
|| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct: 318 ccacacaagcgcaagcctgacatcagccgcgcaaaagagctccttggctgggagcccaag 377
Query: 306 gttcccctccgtgagggccttccccgcatggtcactgacttccgcaaacgtatcttcggg 365
|||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 378 gttccccttcgtgagggtcttcctcgcatggtcactgacttccgcaaacgtatcttcggg 437
Query: 366 gaccaggaagggtccaccgagtcagctggtggcctttcttaagtgctcaaaacttgtt-g 424
||||| | || ||||| ||| |||||||||||||||||| ||| ||| |||||||| |
Sbjct: 438 gaccaaggagaatccactgaggcagctggtggcctttctt-agtcctc--aacttgttgg 494
Query: 425 aagtgacacgtttgt 439
|||||||||||||||
Sbjct: 495 aagtgacacgtttgt 509
>gb|CN128193.1|CN128193 RHOH1_27_E03.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_27_E03_A002 5', mRNA sequence
Length = 696
Score = 579 bits (292), Expect = e-163
Identities = 402/435 (92%), Gaps = 4/435 (0%)
Strand = Plus / Plus
Query: 6 gttgctcaggcgctgaggaaggagcctttgacagtctatggtgatggcaagcagactagg 65
||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||
Sbjct: 188 gttgctcaggcgctgaggaaggagcctttgacagtttatggcgatggcaaacagactagg 247
Query: 66 agctttcaatatgtctcagatttggtggaagggctgatgaagctcatggaaggggagcac 125
||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 248 agctttcaatacgtatcagatttggtggaagggctgatgaagctcatggaaggggatcac 307
Query: 126 attgggccgttcaacctcggcaaccctggagaattcagcatgctggagctggctaaggtg 185
||||| || ||||||||||| || ||||||||||||| ||||||||||||||||||||||
Sbjct: 308 attggaccattcaacctcggtaatcctggagaattcaccatgctggagctggctaaggtg 367
Query: 186 gtccaggacaccatcgacccagaggcgcacatcgagttccgtccgaacaccgcagatgat 245
|| ||||||||||||||||||||||||| ||||||||||||||| ||||| ||||| |||
Sbjct: 368 gttcaggacaccatcgacccagaggcgcgcatcgagttccgtccaaacactgcagacgat 427
Query: 246 ccgcacaagcgcaagcctgacatcagccgcgcgaaagagctcctcggctgggagcccaag 305
|| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct: 428 ccacacaagcgcaagcctgacatcagccgcgcaaaagagctccttggctgggagcccaag 487
Query: 306 gttcccctccgtgagggccttccccgcatggtcactgacttccgcaaacgtatcttcggg 365
|||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 488 gttccccttcgtgagggtcttcctcgcatggtcactgacttccgcaaacgtatcttcggg 547
Query: 366 gaccaggaagggtccaccgagtcagctggtggcctttcttaagtgctcaaaacttgtt-g 424
||||| | || ||||| ||| |||||||||||||||||| ||| ||| |||||||| |
Sbjct: 548 gaccaaggagaatccactgaggcagctggtggcctttctt-agtcctc--aacttgttgg 604
Query: 425 aagtgacacgtttgt 439
|||||||||||||||
Sbjct: 605 aagtgacacgtttgt 619
>gb|CX623197.1|CX623197 GABR1_68_F11.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_68_F11_A002 3', mRNA sequence
Length = 752
Score = 579 bits (292), Expect = e-163
Identities = 402/435 (92%), Gaps = 4/435 (0%)
Strand = Plus / Plus
Query: 6 gttgctcaggcgctgaggaaggagcctttgacagtctatggtgatggcaagcagactagg 65
||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||
Sbjct: 90 gttgctcaggcgctgaggaaggagcctttgacagtttatggcgatggcaaacagactagg 149
Query: 66 agctttcaatatgtctcagatttggtggaagggctgatgaagctcatggaaggggagcac 125
||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 150 agctttcaatacgtatcagatttggtggaagggctgatgaagctcatggaaggggatcac 209
Query: 126 attgggccgttcaacctcggcaaccctggagaattcagcatgctggagctggctaaggtg 185
||||| || ||||||||||| || ||||||||||||| ||||||||||||||||||||||
Sbjct: 210 attggaccattcaacctcggtaatcctggagaattcaccatgctggagctggctaaggtg 269
Query: 186 gtccaggacaccatcgacccagaggcgcacatcgagttccgtccgaacaccgcagatgat 245
|| ||||||||||||||||||||||||| ||||||||||||||| ||||| ||||| |||
Sbjct: 270 gttcaggacaccatcgacccagaggcgcgcatcgagttccgtccaaacactgcagacgat 329
Query: 246 ccgcacaagcgcaagcctgacatcagccgcgcgaaagagctcctcggctgggagcccaag 305
|| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct: 330 ccacacaagcgcaagcctgacatcagccgcgcaaaagagctccttggctgggagcccaag 389
Query: 306 gttcccctccgtgagggccttccccgcatggtcactgacttccgcaaacgtatcttcggg 365
|||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 390 gttccccttcgtgagggtcttcctcgcatggtcactgacttccgcaaacgtatcttcggg 449
Query: 366 gaccaggaagggtccaccgagtcagctggtggcctttcttaagtgctcaaaacttgtt-g 424
||||| | || ||||| ||| |||||||||||||||||| ||| ||| |||||||| |
Sbjct: 450 gaccaaggagaatccactgaggcagctggtggcctttctt-agtcctc--aacttgttgg 506
Query: 425 aagtgacacgtttgt 439
|||||||||||||||
Sbjct: 507 aagtgacacgtttgt 521
>gb|CX611045.1|CX611045 ANR1_22_G07.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_22_G07_A002 3', mRNA sequence
Length = 790
Score = 571 bits (288), Expect = e-161
Identities = 401/435 (92%), Gaps = 4/435 (0%)
Strand = Plus / Plus
Query: 6 gttgctcaggcgctgaggaaggagcctttgacagtctatggtgatggcaagcagactagg 65
||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||
Sbjct: 56 gttgctcaggcgctgaggaaggagcctttgacagtttatggcgatggcaaacagactagg 115
Query: 66 agctttcaatatgtctcagatttggtggaagggctgatgaagctcatggaaggggagcac 125
||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 116 agctttcaatacgtatcagatttggtggaagggctgatgaagctcatggaaggggatcac 175
Query: 126 attgggccgttcaacctcggcaaccctggagaattcagcatgctggagctggctaaggtg 185
||||| || ||||||||||| || ||||||||||||| ||||||||||||||||||||||
Sbjct: 176 attggaccattcaacctcggtaatcctggagaattcaccatgctggagctggctaaggtg 235
Query: 186 gtccaggacaccatcgacccagaggcgcacatcgagttccgtccgaacaccgcagatgat 245
|| ||||||||||||||||||||||||| |||||||||||| || ||||| ||||| |||
Sbjct: 236 gttcaggacaccatcgacccagaggcgcgcatcgagttccgcccaaacactgcagacgat 295
Query: 246 ccgcacaagcgcaagcctgacatcagccgcgcgaaagagctcctcggctgggagcccaag 305
|| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct: 296 ccacacaagcgcaagcctgacatcagccgcgcaaaagagctccttggctgggagcccaag 355
Query: 306 gttcccctccgtgagggccttccccgcatggtcactgacttccgcaaacgtatcttcggg 365
|||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 356 gttccccttcgtgagggtcttcctcgcatggtcactgacttccgcaaacgtatcttcggg 415
Query: 366 gaccaggaagggtccaccgagtcagctggtggcctttcttaagtgctcaaaacttgtt-g 424
||||| | || ||||| ||| |||||||||||||||||| ||| ||| |||||||| |
Sbjct: 416 gaccaaggagaatccactgaggcagctggtggcctttctt-agtcctc--aacttgttgg 472
Query: 425 aagtgacacgtttgt 439
|||||||||||||||
Sbjct: 473 aagtgacacgtttgt 487
>gb|CX622843.1|CX622843 GABR1_66_G03.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_66_G03_A002 3', mRNA sequence
Length = 720
Score = 547 bits (276), Expect = e-154
Identities = 398/435 (91%), Gaps = 4/435 (0%)
Strand = Plus / Plus
Query: 6 gttgctcaggcgctgaggaaggagcctttgacagtctatggtgatggcaagcagactagg 65
||||||||||||||||||||||| ||||||||||| ||||| |||||||| |||||||||
Sbjct: 6 gttgctcaggcgctgaggaaggaccctttgacagtttatggcgatggcaaacagactagg 65
Query: 66 agctttcaatatgtctcagatttggtggaagggctgatgaagctcatggaaggggagcac 125
||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 66 agctttcaatacgtatcagatttggtggaagggctgatgaagctcatggaaggggatcac 125
Query: 126 attgggccgttcaacctcggcaaccctggagaattcagcatgctggagctggctaaggtg 185
||||| || ||||||||||| || ||||||||||||| ||||||||||||||||||||||
Sbjct: 126 attggcccattcaacctcggtaatcctggagaattcaccatgctggagctggctaaggtg 185
Query: 186 gtccaggacaccatcgacccagaggcgcacatcgagttccgtccgaacaccgcagatgat 245
|| |||||| |||||||||||||||||| ||||||||||||||| ||||| ||||| |||
Sbjct: 186 gttcaggaccccatcgacccagaggcgcgcatcgagttccgtccaaacactgcagacgat 245
Query: 246 ccgcacaagcgcaagcctgacatcagccgcgcgaaagagctcctcggctgggagcccaag 305
|| ||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct: 246 ccacacaagcgcaaccctgacatcagccgcgcaaaagagctccttggctgggagcccaag 305
Query: 306 gttcccctccgtgagggccttccccgcatggtcactgacttccgcaaacgtatcttcggg 365
|||||||| |||||||| ||||| |||||||||||||||||||||| |||||||||||||
Sbjct: 306 gttccccttcgtgagggtcttcctcgcatggtcactgacttccgcagacgtatcttcggg 365
Query: 366 gaccaggaagggtccaccgagtcagctggtggcctttcttaagtgctcaaaacttgtt-g 424
||||| | || ||||| ||| |||||||||||||||||| ||| ||| |||||||| |
Sbjct: 366 gaccaaggagaatccactgaggcagctggtggcctttctt-agtcctc--aacttgttgg 422
Query: 425 aagtgacacgtttgt 439
|||||||||||||||
Sbjct: 423 aagtgacacgtttgt 437
>gb|BG047988.1|BG047988 OV1_26_C08.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 635
Score = 521 bits (263), Expect = e-146
Identities = 373/406 (91%), Gaps = 4/406 (0%)
Strand = Plus / Plus
Query: 35 gacagtctatggtgatggcaagcagactaggagctttcaatatgtctcagatttggtgga 94
|||||| ||||| |||||||| |||||||||||||||||||| || ||||||||||||||
Sbjct: 1 gacagtttatggcgatggcaaacagactaggagctttcaatacgtatcagatttggtgga 60
Query: 95 agggctgatgaagctcatggaaggggagcacattgggccgttcaacctcggcaaccctgg 154
||||||||||||||||||||||||||| |||||||| || ||||||||||| || |||||
Sbjct: 61 agggctgatgaagctcatggaaggggatcacattggaccattcaacctcggtaatcctgg 120
Query: 155 agaattcagcatgctggagctggctaaggtggtccaggacaccatcgacccagaggcgca 214
|||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 121 agaattcaccatgctggagctggctaaggtggttcaggacaccatcgacccagaggcgcg 180
Query: 215 catcgagttccgtccgaacaccgcagatgatccgcacaagcgcaagcctgacatcagccg 274
||||||||||||||| ||||| ||||| ||||| ||||||||||||||||||||||||||
Sbjct: 181 catcgagttccgtccaaacactgcagacgatccacacaagcgcaagcctgacatcagccg 240
Query: 275 cgcgaaagagctcctcggctgggagcccaaggttcccctccgtgagggccttccccgcat 334
||| ||||||||||| ||||||||||||||||||||||| |||||||| ||||| |||||
Sbjct: 241 cgcaaaagagctccttggctgggagcccaaggttccccttcgtgagggtcttcctcgcat 300
Query: 335 ggtcactgacttccgcaaacgtatcttcggggaccaggaagggtccaccgagtcagctgg 394
|||||||||||||||||||||||||||||||||||| | || ||||| ||| |||||||
Sbjct: 301 ggtcactgacttccgcaaacgtatcttcggggaccaaggagaatccactgaggcagctgg 360
Query: 395 tggcctttcttaagtgctcaaaacttgtt-gaagtgacacgtttgt 439
||||||||||| ||| ||| |||||||| ||||||||||||||||
Sbjct: 361 tggcctttctt-agtcctc--aacttgttggaagtgacacgtttgt 403
>gb|CN125323.1|CN125323 RHOH1_10_H10.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_10_H10_A002 3', mRNA sequence
Length = 752
Score = 385 bits (194), Expect = e-105
Identities = 280/305 (91%), Gaps = 4/305 (1%)
Strand = Plus / Plus
Query: 136 tcaacctcggcaaccctggagaattcagcatgctggagctggctaaggtggtccaggaca 195
|||||||||| || ||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct: 211 tcaacctcggtaatcctggagaattcaccatgctggagctggctaaggtggttcaggaca 270
Query: 196 ccatcgacccagaggcgcacatcgagttccgtccgaacaccgcagatgatccgcacaagc 255
|||||||||||||||||| ||||||||||||||| ||||| ||||| ||||| |||||||
Sbjct: 271 ccatcgacccagaggcgcgcatcgagttccgtccaaacactgcagacgatccacacaagc 330
Query: 256 gcaagcctgacatcagccgcgcgaaagagctcctcggctgggagcccaaggttcccctcc 315
|||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |
Sbjct: 331 gcaagcctgacatcagccgcgcaaaagagctccttggctgggagcccaaggttccccttc 390
Query: 316 gtgagggccttccccgcatggtcactgacttccgcaaacgtatcttcggggaccaggaag 375
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 391 gtgagggtcttcctcgcatggtcactgacttccgcaaacgtatcttcggggaccaaggag 450
Query: 376 ggtccaccgagtcagctggtggcctttcttaagtgctcaaaacttgtt-gaagtgacacg 434
||||| ||| |||||||||||||||||| ||| ||| |||||||| |||||||||||
Sbjct: 451 aatccactgaggcagctggtggcctttctt-agtcctc--aacttgttggaagtgacacg 507
Query: 435 tttgt 439
|||||
Sbjct: 508 tttgt 512
>gb|CD225257.1|CD225257 CCC1_39_H04.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_39_H04_A007 3', mRNA sequence
Length = 602
Score = 379 bits (191), Expect = e-103
Identities = 280/306 (91%), Gaps = 4/306 (1%)
Strand = Plus / Plus
Query: 135 ttcaacctcggcaaccctggagaattcagcatgctggagctggctaaggtggtccaggac 194
||||||||||| || ||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct: 1 ttcaacctcggtaatcctggagaattcaccatgctggagctggctaaggtggttcaggac 60
Query: 195 accatcgacccagaggcgcacatcgagttccgtccgaacaccgcagatgatccgcacaag 254
||||||||||||||||||| ||||||||||||||| ||||| ||||||||||| ||||||
Sbjct: 61 accatcgacccagaggcgcgcatcgagttccgtccaaacactgcagatgatccacacaag 120
Query: 255 cgcaagcctgacatcagccgcgcgaaagagctcctcggctgggagcccaaggttcccctc 314
||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct: 121 cgcaagcctgacatcagccgcgcaaaagagctccttggctgggagcccaaggttcccctt 180
Query: 315 cgtgagggccttccccgcatggtcactgacttccgcaaacgtatcttcggggaccaggaa 374
|| ||||| ||||| |||||||||||||||||||||||||||||||||||||| || | |
Sbjct: 181 cgggagggtcttcctcgcatggtcactgacttccgcaaacgtatcttcggggatcaagga 240
Query: 375 gggtccaccgagtcagctggtggcctttcttaagtgctcaaaacttgtt-gaagtgacac 433
| ||||| ||| |||||||||||||||||| ||| ||| |||||||| ||||||||||
Sbjct: 241 gaatccactgaggcagctggtggcctttctt-agtcctc--aacttgttggaagtgacac 297
Query: 434 gtttgt 439
||||||
Sbjct: 298 gtttgt 303
>gb|CX615688.1|CX615688 GABR1_22_A05.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_22_A05_A002 3', mRNA sequence
Length = 596
Score = 369 bits (186), Expect = e-100
Identities = 266/289 (92%), Gaps = 4/289 (1%)
Strand = Plus / Plus
Query: 152 tggagaattcagcatgctggagctggctaaggtggtccaggacaccatcgacccagaggc 211
||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 1 tggagaattcaccatgctggagctggctaaggtggttcaggacaccatcgacccagaggc 60
Query: 212 gcacatcgagttccgtccgaacaccgcagatgatccgcacaagcgcaagcctgacatcag 271
|| ||||||||||||||| ||||| ||||| ||||| |||||||||||||||||||||||
Sbjct: 61 gcgcatcgagttccgtccaaacactgcagacgatccacacaagcgcaagcctgacatcag 120
Query: 272 ccgcgcgaaagagctcctcggctgggagcccaaggttcccctccgtgagggccttccccg 331
|||||| ||||||||||| ||||||||||||||||||||||| |||||||| ||||| ||
Sbjct: 121 ccgcgcaaaagagctccttggctgggagcccaaggttccccttcgtgagggtcttcctcg 180
Query: 332 catggtcactgacttccgcaaacgtatcttcggggaccaggaagggtccaccgagtcagc 391
||||||||||||||||||||||||||||||||||||||| | || ||||| ||| ||||
Sbjct: 181 catggtcactgacttccgcaaacgtatcttcggggaccaaggagaatccactgaggcagc 240
Query: 392 tggtggcctttcttaagtgctcaaaacttgtt-gaagtgacacgtttgt 439
|||||||||||||| ||| ||| |||||||| ||||||||||||||||
Sbjct: 241 tggtggcctttctt-agtcctc--aacttgttggaagtgacacgtttgt 286
>gb|BG103207.1|BG103207 RHIZ2_19_E05.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 561
Score = 339 bits (171), Expect = 2e-091
Identities = 245/266 (92%), Gaps = 4/266 (1%)
Strand = Plus / Plus
Query: 175 tggctaaggtggtccaggacaccatcgacccagaggcgcacatcgagttccgtccgaaca 234
||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct: 1 tggctaaggtggttcaggacaccatcgacccagaggcgcgcatcgagttccgtccaaaca 60
Query: 235 ccgcagatgatccgcacaagcgcaagcctgacatcagccgcgcgaaagagctcctcggct 294
| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct: 61 ctgcagatgatccacacaagcgcaagcctgacatcagccgcgcaaaagagctccttggct 120
Query: 295 gggagcccaaggttcccctccgtgagggccttccccgcatggtcactgacttccgcaaac 354
||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||
Sbjct: 121 gggagcccaaggttccccttcgtgagggtcttcctcgcatggtcactgacttccgcaaac 180
Query: 355 gtatcttcggggaccaggaagggtccaccgagtcagctggtggcctttcttaagtgctca 414
|||||||||||||||| | || ||||| ||| |||||||||||||||||| ||| |||
Sbjct: 181 gtatcttcggggaccaaggagaatccactgaggcagctggtggcctttctt-agtcctc- 238
Query: 415 aaacttgtt-gaagtgacacgtttgt 439
|||||||| ||||||||||||||||
Sbjct: 239 -aacttgttggaagtgacacgtttgt 263
>gb|CD213228.1|CD213228 HS1_29_A02.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_29_A02_A012 3', mRNA sequence
Length = 570
Score = 337 bits (170), Expect = 8e-091
Identities = 253/277 (91%), Gaps = 4/277 (1%)
Strand = Plus / Plus
Query: 164 catgctggagctggctaaggtggtccaggacaccatcgacccagaggcgcacatcgagtt 223
|||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |||||
Sbjct: 1 catgctggagctggctaaggtggttcaggacaccatcgacccagaggcgcgcattgagtt 60
Query: 224 ccgtccgaacaccgcagatgatccgcacaagcgcaagcctgacatcagccgcgcgaaaga 283
|||||| ||||| ||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct: 61 ccgtccaaacactgcagatgatccacacaagcgcaagcctgacatcagccgcgcaaaaga 120
Query: 284 gctcctcggctgggagcccaaggttcccctccgtgagggccttccccgcatggtcactga 343
|||||| ||||||||||||||||||||||| || ||||| ||||| ||||||||||||||
Sbjct: 121 gctccttggctgggagcccaaggttccccttcgggagggtcttcctcgcatggtcactga 180
Query: 344 cttccgcaaacgtatcttcggggaccaggaagggtccaccgagtcagctggtggcctttc 403
|||||||||||||||||||||||| || | || ||||| ||| ||||||||||||||||
Sbjct: 181 cttccgcaaacgtatcttcggggatcaaggagaatccactgaggcagctggtggcctttc 240
Query: 404 ttaagtgctcaaaacttgtt-gaagtgacacgtttgt 439
|| ||| ||| |||||||| ||||||||||||||||
Sbjct: 241 tt-agtcctc--aacttgttggaagtgacacgtttgt 274
>gb|BG464726.1|BG464726 EM1_33_C05.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 299
Score = 305 bits (154), Expect = 3e-081
Identities = 231/253 (91%), Gaps = 4/253 (1%)
Strand = Plus / Plus
Query: 189 caggacaccatcgacccagaggcgcacatcgagttccgtccgaacaccgcagatgatccg 248
||||||||||||||||||||||||| ||||||||||||||| ||||| ||||| |||||
Sbjct: 2 caggacaccatcgacccagaggcgcgcatcgagttccgtccaaacactgcagacgatcca 61
Query: 249 cacaagcgcaagcctgacatcagccgcgcgaaagagctcctcggctgggagcccaaggtt 308
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct: 62 cacaagcgcaagcctgacatcagccgcgcaaaagagctccttggctgggagcccaaggtt 121
Query: 309 cccctccgtgagggccttccccgcatggtcactgacttccgcaaacgtatcttcggggac 368
||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 122 ccccttcgtgagggtcttcctcgcatggtcactgacttccgcaaacgtatcttcggggac 181
Query: 369 caggaagggtccaccgagtcagctggtggcctttcttaagtgctcaaaacttgttg--aa 426
|| | || ||||| ||| ||||||||||||||||||| || ||||| | |||||| ||
Sbjct: 182 caaggagaatccactgaggcagctggtggcctttctta-gtcctcaaca-ttgttggaaa 239
Query: 427 gtgacacgtttgt 439
|||||||||||||
Sbjct: 240 gtgacacgtttgt 252
>gb|BE592429.1|BE592429 WS1_94_F06.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 477
Score = 262 bits (132), Expect = 4e-068
Identities = 203/223 (91%), Gaps = 4/223 (1%)
Strand = Plus / Plus
Query: 218 cgagttccgtccgaacaccgcagatgatccgcacaagcgcaagcctgacatcagccgcgc 277
|||||||||||| ||||| ||||| ||||| |||||||||||||||||||||||||||||
Sbjct: 9 cgagttccgtccaaacactgcagacgatccacacaagcgcaagcctgacatcagccgcgc 68
Query: 278 gaaagagctcctcggctgggagcccaaggttcccctccgtgagggccttccccgcatggt 337
||||||||||| ||||||||||||||||||||||| |||||||| ||||| ||||||||
Sbjct: 69 aaaagagctccttggctgggagcccaaggttccccttcgtgagggtcttcctcgcatggt 128
Query: 338 cactgacttccgcaaacgtatcttcggggaccaggaagggtccaccgagtcagctggtgg 397
||||||||||||||||||||||||||||||||| | || ||||| ||| ||||||||||
Sbjct: 129 cactgacttccgcaaacgtatcttcggggaccaaggagaatccactgaggcagctggtgg 188
Query: 398 cctttcttaagtgctcaaaacttgtt-gaagtgacacgtttgt 439
|||||||| ||| ||| |||||||| ||||||||||||||||
Sbjct: 189 cctttctt-agtcctc--aacttgttggaagtgacacgtttgt 228
>gb|BE358947.1|BE358947 DG1_37_C03.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 587
Score = 240 bits (121), Expect = 1e-061
Identities = 304/365 (83%)
Strand = Plus / Plus
Query: 6 gttgctcaggcgctgaggaaggagcctttgacagtctatggtgatggcaagcagactagg 65
||||||||||| |||||||||||||| ||||| || ||||||||||| ||||| || |||
Sbjct: 112 gttgctcaggctctgaggaaggagcccttgacggtttatggtgatggaaagcaaaccagg 171
Query: 66 agctttcaatatgtctcagatttggtggaagggctgatgaagctcatggaaggggagcac 125
|| || |||||||| || ||| |||| || || ||||||||||| |||||||| || ||
Sbjct: 172 agtttccaatatgtttctgatctggttgagggtctgatgaagctgatggaaggcgaccat 231
Query: 126 attgggccgttcaacctcggcaaccctggagaattcagcatgctggagctggctaaggtg 185
| || || |||||||| || ||||| || || |||| |||||| ||||| || |||||
Sbjct: 232 gtaggaccattcaacctgggtaaccccggcgagttcaccatgcttgagcttgccaaggtt 291
Query: 186 gtccaggacaccatcgacccagaggcgcacatcgagttccgtccgaacaccgcagatgat 245
|||||||||||||||||||| | || || ||||||||||||| ||||||| || ||
Sbjct: 292 gtccaggacaccatcgaccccaatgcacagatcgagttccgtcagaacacccaggacgac 351
Query: 246 ccgcacaagcgcaagcctgacatcagccgcgcgaaagagctcctcggctgggagcccaag 305
|| |||||||||||||| ||||||||||| || || |||||||| || |||||||| |||
Sbjct: 352 ccacacaagcgcaagcccgacatcagccgtgccaaggagctccttgggtgggagccgaag 411
Query: 306 gttcccctccgtgagggccttccccgcatggtcactgacttccgcaaacgtatcttcggg 365
| |||||||| ||||||||||||| |||||||| |||||||||||| || ||||| ||
Sbjct: 412 atccccctccgcgagggccttcccctcatggtcagtgacttccgcaagcgcatctttggc 471
Query: 366 gacca 370
|||||
Sbjct: 472 gacca 476
>gb|BE598394.1|BE598394 PI1_81_A12.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 697
Score = 240 bits (121), Expect = 1e-061
Identities = 304/365 (83%)
Strand = Plus / Plus
Query: 6 gttgctcaggcgctgaggaaggagcctttgacagtctatggtgatggcaagcagactagg 65
||||||||||| |||||||||||||| ||||| || ||||||||||| ||||| || |||
Sbjct: 42 gttgctcaggctctgaggaaggagcccttgacggtttatggtgatggaaagcaaaccagg 101
Query: 66 agctttcaatatgtctcagatttggtggaagggctgatgaagctcatggaaggggagcac 125
|| || |||||||| || ||| |||| || || ||||||||||| |||||||| || ||
Sbjct: 102 agtttccaatatgtttctgatctggttgagggtctgatgaagctgatggaaggcgaccat 161
Query: 126 attgggccgttcaacctcggcaaccctggagaattcagcatgctggagctggctaaggtg 185
| || || |||||||| || ||||| || || |||| |||||| ||||| || |||||
Sbjct: 162 gtaggaccattcaacctgggtaaccccggcgagttcaccatgcttgagcttgccaaggtt 221
Query: 186 gtccaggacaccatcgacccagaggcgcacatcgagttccgtccgaacaccgcagatgat 245
|||||||||||||||||||| | || || ||||||||||||| ||||||| || ||
Sbjct: 222 gtccaggacaccatcgaccccaatgcacagatcgagttccgtcagaacacccaggacgac 281
Query: 246 ccgcacaagcgcaagcctgacatcagccgcgcgaaagagctcctcggctgggagcccaag 305
|| |||||||||||||| ||||||||||| || || |||||||| || |||||||| |||
Sbjct: 282 ccacacaagcgcaagcccgacatcagccgtgccaaggagctccttgggtgggagccgaag 341
Query: 306 gttcccctccgtgagggccttccccgcatggtcactgacttccgcaaacgtatcttcggg 365
| |||||||| ||||||||||||| |||||||| |||||||||||| || ||||| ||
Sbjct: 342 atccccctccgcgagggccttcccctcatggtcagtgacttccgcaagcgcatctttggc 401
Query: 366 gacca 370
|||||
Sbjct: 402 gacca 406
>gb|BG947739.1|BG947739 IP1_8_E06.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 698
Score = 240 bits (121), Expect = 1e-061
Identities = 304/365 (83%)
Strand = Plus / Plus
Query: 6 gttgctcaggcgctgaggaaggagcctttgacagtctatggtgatggcaagcagactagg 65
||||||||||| |||||||||||||| ||||| || ||||||||||| ||||| || |||
Sbjct: 80 gttgctcaggctctgaggaaggagcccttgacggtttatggtgatggaaagcaaaccagg 139
Query: 66 agctttcaatatgtctcagatttggtggaagggctgatgaagctcatggaaggggagcac 125
|| || |||||||| || ||| |||| || || ||||||||||| |||||||| || ||
Sbjct: 140 agtttccaatatgtttctgatctggttgagggtctgatgaagctgatggaaggcgaccat 199
Query: 126 attgggccgttcaacctcggcaaccctggagaattcagcatgctggagctggctaaggtg 185
| || || |||||||| || ||||| || || |||| |||||| ||||| || |||||
Sbjct: 200 gtaggaccattcaacctgggtaaccccggcgagttcaccatgcttgagcttgccaaggtt 259
Query: 186 gtccaggacaccatcgacccagaggcgcacatcgagttccgtccgaacaccgcagatgat 245
|||||||||||||||||||| | || || ||||||||||||| ||||||| || ||
Sbjct: 260 gtccaggacaccatcgaccccaatgcacagatcgagttccgtcagaacacccaggacgac 319
Query: 246 ccgcacaagcgcaagcctgacatcagccgcgcgaaagagctcctcggctgggagcccaag 305
|| |||||||||||||| ||||||||||| || || |||||||| || |||||||| |||
Sbjct: 320 ccacacaagcgcaagcccgacatcagccgtgccaaggagctccttgggtgggagccgaag 379
Query: 306 gttcccctccgtgagggccttccccgcatggtcactgacttccgcaaacgtatcttcggg 365
| |||||||| ||||||||||||| |||||||| |||||||||||| || ||||| ||
Sbjct: 380 atccccctccgcgagggccttcccctcatggtcagtgacttccgcaagcgcatctttggc 439
Query: 366 gacca 370
|||||
Sbjct: 440 gacca 444
>gb|BM326925.1|BM326925 PIC1_4_G12.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 665
Score = 240 bits (121), Expect = 1e-061
Identities = 304/365 (83%)
Strand = Plus / Plus
Query: 6 gttgctcaggcgctgaggaaggagcctttgacagtctatggtgatggcaagcagactagg 65
||||||||||| |||||||||||||| ||||| || ||||||||||| ||||| || |||
Sbjct: 47 gttgctcaggctctgaggaaggagcccttgacggtttatggtgatggaaagcaaaccagg 106
Query: 66 agctttcaatatgtctcagatttggtggaagggctgatgaagctcatggaaggggagcac 125
|| || |||||||| || ||| |||| || || ||||||||||| |||||||| || ||
Sbjct: 107 agtttccaatatgtttctgatctggttgagggtctgatgaagctgatggaaggcgaccat 166
Query: 126 attgggccgttcaacctcggcaaccctggagaattcagcatgctggagctggctaaggtg 185
| || || |||||||| || ||||| || || |||| |||||| ||||| || |||||
Sbjct: 167 gtaggaccattcaacctgggtaaccccggcgagttcaccatgcttgagcttgccaaggtt 226
Query: 186 gtccaggacaccatcgacccagaggcgcacatcgagttccgtccgaacaccgcagatgat 245
|||||||||||||||||||| | || || ||||||||||||| ||||||| || ||
Sbjct: 227 gtccaggacaccatcgaccccaatgcacagatcgagttccgtcagaacacccaggacgac 286
Query: 246 ccgcacaagcgcaagcctgacatcagccgcgcgaaagagctcctcggctgggagcccaag 305
|| |||||||||||||| ||||||||||| || || |||||||| || |||||||| |||
Sbjct: 287 ccacacaagcgcaagcccgacatcagccgtgccaaggagctccttgggtgggagccgaag 346
Query: 306 gttcccctccgtgagggccttccccgcatggtcactgacttccgcaaacgtatcttcggg 365
| |||||||| ||||||||||||| |||||||| |||||||||||| || ||||| ||
Sbjct: 347 atccccctccgcgagggccttcccctcatggtcagtgacttccgcaagcgcatctttggc 406
Query: 366 gacca 370
|||||
Sbjct: 407 gacca 411
>gb|CX612233.1|CX612233 GABR1_1_F11.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_1_F11_A002 3', mRNA sequence
Length = 749
Score = 240 bits (121), Expect = 1e-061
Identities = 304/365 (83%)
Strand = Plus / Plus
Query: 6 gttgctcaggcgctgaggaaggagcctttgacagtctatggtgatggcaagcagactagg 65
||||||||||| |||||||||||||| ||||| || ||||||||||| ||||| || |||
Sbjct: 56 gttgctcaggctctgaggaaggagcccttgacggtttatggtgatggaaagcaaaccagg 115
Query: 66 agctttcaatatgtctcagatttggtggaagggctgatgaagctcatggaaggggagcac 125
|| || |||||||| || ||| |||| || || ||||||||||| |||||||| || ||
Sbjct: 116 agtttccaatatgtttctgatctggttgagggtctgatgaagctgatggaaggcgaccat 175
Query: 126 attgggccgttcaacctcggcaaccctggagaattcagcatgctggagctggctaaggtg 185
| || || |||||||| || ||||| || || |||| |||||| ||||| || |||||
Sbjct: 176 gtaggaccattcaacctgggtaaccccggcgagttcaccatgcttgagcttgccaaggtt 235
Query: 186 gtccaggacaccatcgacccagaggcgcacatcgagttccgtccgaacaccgcagatgat 245
|||||||||||||||||||| | || || ||||||||||||| ||||||| || ||
Sbjct: 236 gtccaggacaccatcgaccccaatgcacagatcgagttccgtcagaacacccaggacgac 295
Query: 246 ccgcacaagcgcaagcctgacatcagccgcgcgaaagagctcctcggctgggagcccaag 305
|| |||||||||||||| ||||||||||| || || |||||||| || |||||||| |||
Sbjct: 296 ccacacaagcgcaagcccgacatcagccgtgccaaggagctccttgggtgggagccgaag 355
Query: 306 gttcccctccgtgagggccttccccgcatggtcactgacttccgcaaacgtatcttcggg 365
| |||||||| ||||||||||||| |||||||| |||||||||||| || ||||| ||
Sbjct: 356 atccccctccgcgagggccttcccctcatggtcagtgacttccgcaagcgcatctttggc 415
Query: 366 gacca 370
|||||
Sbjct: 416 gacca 420
>gb|BE358980.1|BE358980 DG1_37_C03.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 433
Score = 224 bits (113), Expect = 8e-057
Identities = 293/353 (83%)
Strand = Plus / Plus
Query: 18 ctgaggaaggagcctttgacagtctatggtgatggcaagcagactaggagctttcaatat 77
|||||||||||||| ||||| || ||||||||||| ||||| || ||||| || ||||||
Sbjct: 3 ctgaggaaggagcccttgacggtttatggtgatggaaagcaaaccaggagtttccaatat 62
Query: 78 gtctcagatttggtggaagggctgatgaagctcatggaaggggagcacattgggccgttc 137
|| || ||| |||| || || ||||||||||| |||||||| || || | || || |||
Sbjct: 63 gtttctgatctggttgagggtctgatgaagctgatggaaggcgaccatgtaggaccattc 122
Query: 138 aacctcggcaaccctggagaattcagcatgctggagctggctaaggtggtccaggacacc 197
||||| || ||||| || || |||| |||||| ||||| || ||||| ||||||||||||
Sbjct: 123 aacctgggtaaccccggcgagttcaccatgcttgagcttgccaaggttgtccaggacacc 182
Query: 198 atcgacccagaggcgcacatcgagttccgtccgaacaccgcagatgatccgcacaagcgc 257
|||||||| | || || ||||||||||||| ||||||| || || || |||||||||
Sbjct: 183 atcgaccccaatgcacagatcgagttccgtcagaacacccaggacgacccacacaagcgc 242
Query: 258 aagcctgacatcagccgcgcgaaagagctcctcggctgggagcccaaggttcccctccgt 317
||||| ||||||||||| || || |||||||| || |||||||| ||| | ||||||||
Sbjct: 243 aagcccgacatcagccgtgccaaggagctccttgggtgggagccgaagatccccctccgc 302
Query: 318 gagggccttccccgcatggtcactgacttccgcaaacgtatcttcggggacca 370
||||||||||||| |||||||| |||||||||||| || ||||| || |||||
Sbjct: 303 gagggccttcccctcatggtcagtgacttccgcaagcgcatctttggcgacca 355
>gb|BG103143.1|BG103143 RHIZ2_18_F09.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 423
Score = 224 bits (113), Expect = 8e-057
Identities = 302/365 (82%)
Strand = Plus / Plus
Query: 6 gttgctcaggcgctgaggaaggagcctttgacagtctatggtgatggcaagcagactagg 65
||||||||||| |||||||||||||| ||||| || ||||||||||| ||||| || |||
Sbjct: 15 gttgctcaggctctgaggaaggagcccttgacggtttatggtgatggaaagcaaaccagg 74
Query: 66 agctttcaatatgtctcagatttggtggaagggctgatgaagctcatggaaggggagcac 125
|| || |||||||| || ||| |||| || || ||||||||||| |||||||| || ||
Sbjct: 75 agtttccaatatgtttctgatctggttgagggtctgatgaagctgatggaaggcgaccat 134
Query: 126 attgggccgttcaacctcggcaaccctggagaattcagcatgctggagctggctaaggtg 185
| || || |||||||| || ||||| || || |||| |||||| ||||| || |||||
Sbjct: 135 gtaggaccattcaacctgggtaaccccggcgagttcaccatgcttgagcttgccaaggtt 194
Query: 186 gtccaggacaccatcgacccagaggcgcacatcgagttccgtccgaacaccgcagatgat 245
|||||||||||||| ||||| | || || ||||||||||||| ||||||| || ||
Sbjct: 195 gtccaggacaccattgaccccaatgcacagatcgagttccgtcagaacacccaggacgac 254
Query: 246 ccgcacaagcgcaagcctgacatcagccgcgcgaaagagctcctcggctgggagcccaag 305
|| |||||||||||||| ||||||||||| || || |||||||| || |||||||| |||
Sbjct: 255 ccacacaagcgcaagcccgacatcagccgtgccaaggagctccttgggtgggagccgaag 314
Query: 306 gttcccctccgtgagggccttccccgcatggtcactgacttccgcaaacgtatcttcggg 365
| |||||||| ||||||||||||| |||||||| ||||||||||| || ||||| ||
Sbjct: 315 atccccctccgcgagggccttcccctcatggtcagcgacttccgcaagcgcatctttggc 374
Query: 366 gacca 370
|||||
Sbjct: 375 gacca 379
>gb|BE358837.1|BE358837 DG1_32_C04.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 494
Score = 208 bits (105), Expect = 5e-052
Identities = 285/345 (82%)
Strand = Plus / Plus
Query: 26 ggagcctttgacagtctatggtgatggcaagcagactaggagctttcaatatgtctcaga 85
|||||| ||||| || ||||||||||| ||||| || ||||| || |||||||| || ||
Sbjct: 1 ggagcccttgacggtttatggtgatggaaagcaaaccaggagtttccaatatgtttctga 60
Query: 86 tttggtggaagggctgatgaagctcatggaaggggagcacattgggccgttcaacctcgg 145
| |||| || || ||||||||||| |||||||| || || | || || |||||||| ||
Sbjct: 61 tctggttgagggtctgatgaagctgatggaaggcgaccatgtaggaccattcaacctggg 120
Query: 146 caaccctggagaattcagcatgctggagctggctaaggtggtccaggacaccatcgaccc 205
||||| || || |||| |||||| ||||| || ||||| ||||||||||||||||||||
Sbjct: 121 taaccccggcgagttcaccatgcttgagcttgccaaggttgtccaggacaccatcgaccc 180
Query: 206 agaggcgcacatcgagttccgtccgaacaccgcagatgatccgcacaagcgcaagcctga 265
| || || ||||||||||||| ||||||| || || || |||||||||||||| ||
Sbjct: 181 caatgcacagatcgagttccgtcagaacacccaggacgacccacacaagcgcaagcccga 240
Query: 266 catcagccgcgcgaaagagctcctcggctgggagcccaaggttcccctccgtgagggcct 325
||||||||| || || |||||||| || |||||||| ||| | |||||||| ||||||||
Sbjct: 241 catcagccgtgccaaggagctccttgggtgggagccgaagatccccctccgcgagggcct 300
Query: 326 tccccgcatggtcactgacttccgcaaacgtatcttcggggacca 370
||||| |||||||| |||||||||||| || ||||| || |||||
Sbjct: 301 tcccctcatggtcagtgacttccgcaagcgcatctttggcgacca 345
>gb|BE592553.1|BE592553 WS1_94_F06.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 153
Score = 184 bits (93), Expect = 7e-045
Identities = 134/145 (92%), Gaps = 2/145 (1%)
Strand = Plus / Plus
Query: 218 cgagttccgtccgaacaccgcagatgatccgcacaagcgcaagcctgacatcagccgcgc 277
|||||||||||| ||||| ||||| ||||| |||||||||||||||||||||||||||||
Sbjct: 9 cgagttccgtccaaacactgcagacgatccacacaagcgcaagcctgacatcagccgcgc 68
Query: 278 gaaagagctcctcgg-ctggg-agcccaaggttcccctccgtgagggccttccccgcatg 335
||||||||||| || ||||| |||||||||||||||| |||||||| ||||| ||||||
Sbjct: 69 aaaagagctccttgggctggggagcccaaggttccccttcgtgagggtcttcctcgcatg 128
Query: 336 gtcactgacttccgcaaacgtatct 360
|||||||||||||||||||||||||
Sbjct: 129 gtcactgacttccgcaaacgtatct 153
>gb|BM328668.1|BM328668 PIC1_25_A12.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 650
Score = 184 bits (93), Expect = 7e-045
Identities = 261/317 (82%)
Strand = Plus / Plus
Query: 54 aagcagactaggagctttcaatatgtctcagatttggtggaagggctgatgaagctcatg 113
||||| || ||||| || |||||||| || ||| |||| || || ||||||||||| |||
Sbjct: 3 aagcaaaccaggagtttccaatatgtttctgatctggttgagggtctgatgaagctgatg 62
Query: 114 gaaggggagcacattgggccgttcaacctcggcaaccctggagaattcagcatgctggag 173
||||| || || | || || |||||||| || ||||| || || |||| |||||| |||
Sbjct: 63 gaaggcgaccatgtaggaccattcaacctgggtaaccccggcgagttcaccatgcttgag 122
Query: 174 ctggctaaggtggtccaggacaccatcgacccagaggcgcacatcgagttccgtccgaac 233
|| || ||||| |||||||||||||||||||| | || || ||||||||||||| ||||
Sbjct: 123 cttgccaaggttgtccaggacaccatcgaccccaatgcacagatcgagttccgtcagaac 182
Query: 234 accgcagatgatccgcacaagcgcaagcctgacatcagccgcgcgaaagagctcctcggc 293
||| || || || |||||||||||||| ||||||||||| || || |||||||| ||
Sbjct: 183 acccaggacgacccacacaagcgcaagcccgacatcagccgtgccaaggagctccttggg 242
Query: 294 tgggagcccaaggttcccctccgtgagggccttccccgcatggtcactgacttccgcaaa 353
|||||||| ||| | |||||||| ||||||||||||| |||||||| ||||||||||||
Sbjct: 243 tgggagccgaagatccccctccgcgagggccttcccctcatggtcagtgacttccgcaag 302
Query: 354 cgtatcttcggggacca 370
|| ||||| || |||||
Sbjct: 303 cgcatctttggcgacca 319
>gb|AW564373.1|AW564373 LG1_290_H10.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 509
Score = 182 bits (92), Expect = 3e-044
Identities = 245/296 (82%)
Strand = Plus / Plus
Query: 6 gttgctcaggcgctgaggaaggagcctttgacagtctatggtgatggcaagcagactagg 65
||||||||||| |||||||||||||| ||||| || ||||||||||| ||||| || |||
Sbjct: 203 gttgctcaggctctgaggaaggagcccttgacggtttatggtgatggaaagcaaaccagg 262
Query: 66 agctttcaatatgtctcagatttggtggaagggctgatgaagctcatggaaggggagcac 125
|| || |||||||| || ||| |||| || || ||||||||||| |||||||| || ||
Sbjct: 263 agtttccaatatgtttctgatctggttgagggtctgatgaagctgatggaaggcgaccat 322
Query: 126 attgggccgttcaacctcggcaaccctggagaattcagcatgctggagctggctaaggtg 185
| || || |||||||| || ||||| || || |||| |||||| ||||| || |||||
Sbjct: 323 gtaggaccattcaacctgggtaaccccggcgagttcaccatgcttgagcttgccaaggtt 382
Query: 186 gtccaggacaccatcgacccagaggcgcacatcgagttccgtccgaacaccgcagatgat 245
|||||||||||||||||||| | || || ||||||||||||| ||||||| || ||
Sbjct: 383 gtccaggacaccatcgaccccaatgcacagatcgagttccgtcagaacacccaggacgac 442
Query: 246 ccgcacaagcgcaagcctgacatcagccgcgcgaaagagctcctcggctgggagcc 301
|| |||||||||||||| ||||||||||| || || |||||||| || ||||||||
Sbjct: 443 ccacacaagcgcaagcccgacatcagccgtgccaaggagctccttgggtgggagcc 498
>gb|BE356139.1|BE356139 DG1_122_E02.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 575
Score = 180 bits (91), Expect = 1e-043
Identities = 247/299 (82%)
Strand = Plus / Plus
Query: 72 caatatgtctcagatttggtggaagggctgatgaagctcatggaaggggagcacattggg 131
|||||||| || ||| |||| || || ||||||||||| |||||||| || || | ||
Sbjct: 5 caatatgtttctgatctggttgagggtctgatgaagctgatggaaggcgaccatgtagga 64
Query: 132 ccgttcaacctcggcaaccctggagaattcagcatgctggagctggctaaggtggtccag 191
|| |||||||| || ||||| || || |||| |||||| ||||| || ||||| ||||||
Sbjct: 65 ccattcaacctgggtaaccccggcgagttcaccatgcttgagcttgccaaggttgtccag 124
Query: 192 gacaccatcgacccagaggcgcacatcgagttccgtccgaacaccgcagatgatccgcac 251
|||||||||||||| | || || ||||||||||||| ||||||| || || || |||
Sbjct: 125 gacaccatcgaccccaatgcacagatcgagttccgtcagaacacccaggacgacccacac 184
Query: 252 aagcgcaagcctgacatcagccgcgcgaaagagctcctcggctgggagcccaaggttccc 311
||||||||||| ||||||||||| || || |||||||| || |||||||| ||| | |||
Sbjct: 185 aagcgcaagcccgacatcagccgtgccaaggagctccttgggtgggagccgaagatcccc 244
Query: 312 ctccgtgagggccttccccgcatggtcactgacttccgcaaacgtatcttcggggacca 370
||||| ||||||||||||| |||||||| |||||||||||| || ||||| || |||||
Sbjct: 245 ctccgcgagggccttcccctcatggtcagtgacttccgcaagcgcatctttggcgacca 303
>gb|AW680120.1|AW680120 WS1_4_H09.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA, mRNA
sequence
Length = 492
Score = 153 bits (77), Expect = 2e-035
Identities = 170/201 (84%)
Strand = Plus / Plus
Query: 170 ggagctggctaaggtggtccaggacaccatcgacccagaggcgcacatcgagttccgtcc 229
|||||| || ||||| |||||||||||||||||||| | || || |||||||||||||
Sbjct: 7 ggagcttgccaaggttgtccaggacaccatcgaccccaatgcacagatcgagttccgtca 66
Query: 230 gaacaccgcagatgatccgcacaagcgcaagcctgacatcagccgcgcgaaagagctcct 289
||||||| || || || |||||||||||||| ||||||||||| || || ||||||||
Sbjct: 67 gaacacccaggacgacccacacaagcgcaagcccgacatcagccgtgccaaggagctcct 126
Query: 290 cggctgggagcccaaggttcccctccgtgagggccttccccgcatggtcactgacttccg 349
|| |||||||| ||| | |||||||| ||||||||||||| |||||||| |||||||||
Sbjct: 127 tgggtgggagccgaagatccccctccgcgagggccttcccctcatggtcagtgacttccg 186
Query: 350 caaacgtatcttcggggacca 370
||| || ||||| || |||||
Sbjct: 187 caagcgcatctttggcgacca 207
>gb|BE598726.1|BE598726 PI1_81_A12.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 527
Score = 153 bits (77), Expect = 2e-035
Identities = 212/257 (82%)
Strand = Plus / Plus
Query: 6 gttgctcaggcgctgaggaaggagcctttgacagtctatggtgatggcaagcagactagg 65
||||||||||| |||||||||||||| ||||| || ||||||||||| ||||| || |||
Sbjct: 269 gttgctcaggctctgaggaaggagcccttgacggtttatggtgatggaaagcaaaccagg 328
Query: 66 agctttcaatatgtctcagatttggtggaagggctgatgaagctcatggaaggggagcac 125
|| || |||||||| || ||| |||| || || ||||||||||| |||||||| || ||
Sbjct: 329 agtttccaatatgtttctgatctggttgagggtctgatgaagctgatggaaggcgaccat 388
Query: 126 attgggccgttcaacctcggcaaccctggagaattcagcatgctggagctggctaaggtg 185
| || || |||||||| || ||||| || || |||| |||||| ||||| || |||||
Sbjct: 389 gtaggaccattcaacctgggtaaccccggcgagttcaccatgcttgagcttgccaaggtt 448
Query: 186 gtccaggacaccatcgacccagaggcgcacatcgagttccgtccgaacaccgcagatgat 245
|||||||||||||||||||| | || || ||||||||||||| ||||||| || ||
Sbjct: 449 gtccaggacaccatcgaccccaatgcacagatcgagttccgtcagaacacccaggacgac 508
Query: 246 ccgcacaagcgcaagcc 262
|| ||||||||||||||
Sbjct: 509 ccacacaagcgcaagcc 525
>gb|BG933568.1|BG933568 WS1_4_H09.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA, mRNA
sequence
Length = 496
Score = 153 bits (77), Expect = 2e-035
Identities = 170/201 (84%)
Strand = Plus / Plus
Query: 170 ggagctggctaaggtggtccaggacaccatcgacccagaggcgcacatcgagttccgtcc 229
|||||| || ||||| |||||||||||||||||||| | || || |||||||||||||
Sbjct: 7 ggagcttgccaaggttgtccaggacaccatcgaccccaatgcacagatcgagttccgtca 66
Query: 230 gaacaccgcagatgatccgcacaagcgcaagcctgacatcagccgcgcgaaagagctcct 289
||||||| || || || |||||||||||||| ||||||||||| || || ||||||||
Sbjct: 67 gaacacccaggacgacccacacaagcgcaagcccgacatcagccgtgccaaggagctcct 126
Query: 290 cggctgggagcccaaggttcccctccgtgagggccttccccgcatggtcactgacttccg 349
|| |||||||| ||| | |||||||| ||||||||||||| |||||||| |||||||||
Sbjct: 127 tgggtgggagccgaagatccccctccgcgagggccttcccctcatggtcagtgacttccg 186
Query: 350 caaacgtatcttcggggacca 370
||| || ||||| || |||||
Sbjct: 187 caagcgcatctttggcgacca 207
>gb|CB929269.1|CB929269 ABA1_41_B05.b1_A012 Abscisic acid-treated seedlings Sorghum bicolor
cDNA clone ABA1_41_B05_A012 3', mRNA sequence
Length = 508
Score = 151 bits (76), Expect = 9e-035
Identities = 178/212 (83%)
Strand = Plus / Plus
Query: 159 ttcagcatgctggagctggctaaggtggtccaggacaccatcgacccagaggcgcacatc 218
|||| |||||| ||||| || ||||| |||||||||||||| ||||| | || || |||
Sbjct: 72 ttcaccatgcttgagcttgccaaggttgtccaggacaccattgaccccaatgcacagatc 131
Query: 219 gagttccgtccgaacaccgcagatgatccgcacaagcgcaagcctgacatcagccgcgcg 278
|||||||||| ||||||| || || || |||||||||||||| ||||||||||| ||
Sbjct: 132 gagttccgtcagaacacccaggacgacccacacaagcgcaagcccgacatcagccgtgcc 191
Query: 279 aaagagctcctcggctgggagcccaaggttcccctccgtgagggccttccccgcatggtc 338
|| |||||||| || |||||||| ||| | |||||||| ||||||||||||| |||||||
Sbjct: 192 aaggagctccttgggtgggagccgaagatccccctccgcgagggccttcccctcatggtc 251
Query: 339 actgacttccgcaaacgtatcttcggggacca 370
| |||||||||||| || ||||| || |||||
Sbjct: 252 agtgacttccgcaagcgcatctttggcgacca 283
>gb|BG559870.1|BG559870 RHIZ2_74_F04.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 468
Score = 143 bits (72), Expect = 2e-032
Identities = 177/212 (83%)
Strand = Plus / Plus
Query: 159 ttcagcatgctggagctggctaaggtggtccaggacaccatcgacccagaggcgcacatc 218
|||| |||||| ||||| || ||||| |||||||||||||| ||||| | || || |||
Sbjct: 1 ttcaccatgcttgagcttgccaaggttgtccaggacaccattgaccccaatgcacagatc 60
Query: 219 gagttccgtccgaacaccgcagatgatccgcacaagcgcaagcctgacatcagccgcgcg 278
|||||||||| ||||||| || || || |||||||||||||| ||||||||||| ||
Sbjct: 61 gagttccgtcagaacacccaggacgacccacacaagcgcaagcccgacatcagccgtgcc 120
Query: 279 aaagagctcctcggctgggagcccaaggttcccctccgtgagggccttccccgcatggtc 338
|| |||||||| || |||||||| ||| | |||||||| ||||||||||||| |||||||
Sbjct: 121 aaggagctccttgggtgggagccgaagatccccctccgcgagggccttcccctcatggtc 180
Query: 339 actgacttccgcaaacgtatcttcggggacca 370
| ||||||||||| || ||||| || |||||
Sbjct: 181 agcgacttccgcaagcgcatctttggcgacca 212
>gb|AW922728.1|AW922728 DG1_45_A08.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 298
Score = 137 bits (69), Expect = 1e-030
Identities = 169/201 (84%), Gaps = 1/201 (0%)
Strand = Plus / Plus
Query: 171 gagctggctaaggtggtccaggacaccatcgacccagag-gcgcacatcgagttccgtcc 229
||||| || ||||| |||||||||||||||||||| | || || |||||||||||||
Sbjct: 28 gagcttgccaaggttgtccaggacaccatcgaccccaattgcacagatcgagttccgtca 87
Query: 230 gaacaccgcagatgatccgcacaagcgcaagcctgacatcagccgcgcgaaagagctcct 289
||||||| || || || |||||||||||||| ||||||||||| || || ||||||||
Sbjct: 88 gaacacccaggacgacccacacaagcgcaagcccgacatcagccgtgccaaggagctcct 147
Query: 290 cggctgggagcccaaggttcccctccgtgagggccttccccgcatggtcactgacttccg 349
|| |||||||| ||| | |||||||| ||||||||||||| |||||||| |||||||||
Sbjct: 148 tgggtgggagccgaagatccccctccgcgagggccttcccctcatggtcagtgacttccg 207
Query: 350 caaacgtatcttcggggacca 370
||| || ||||| || |||||
Sbjct: 208 caagcgcatctttggcgacca 228
>gb|CW177065.1|CW177065 104_590_11158824_116_36593_092 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11158824, DNA
sequence
Length = 640
Score = 131 bits (66), Expect = 9e-029
Identities = 192/234 (82%)
Strand = Plus / Minus
Query: 89 ggtggaagggctgatgaagctcatggaaggggagcacattgggccgttcaacctcggcaa 148
|||||| || ||||||| ||| ||||| ||||||| | || ||||||||||| || ||
Sbjct: 604 ggtggagggcctgatgatgctaatggagaaggagcacgtgggcccgttcaacctggggaa 545
Query: 149 ccctggagaattcagcatgctggagctggctaaggtggtccaggacaccatcgacccaga 208
||| || || |||| |||||||||||||| |||||||| ||||| |||||||||| |
Sbjct: 544 cccgggcgagttcacgatgctggagctggccaaggtggtgcaggagaccatcgaccgggg 485
Query: 209 ggcgcacatcgagttccgtccgaacaccgcagatgatccgcacaagcgcaagcctgacat 268
|||| ||||| |||||| || |||||||| || || ||||||||||||||||| |||||
Sbjct: 484 cgcgcgcatcgtgttccgccccaacaccgccgacgacccgcacaagcgcaagccggacat 425
Query: 269 cagccgcgcgaaagagctcctcggctgggagcccaaggttcccctccgtgaggg 322
|| |||||| || |||| || || |||||||||||||| || ||||| |||||
Sbjct: 424 cacccgcgccaagcagctgctggggtgggagcccaaggtgccgctccgcgaggg 371
>gb|BZ332079.1|BZ332079 hx25c04.b1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone hx25c04 5', DNA sequence
Length = 599
Score = 129 bits (65), Expect = 3e-028
Identities = 118/132 (89%), Gaps = 4/132 (3%)
Strand = Plus / Plus
Query: 308 tcccctccgtgagggccttccccgcatggtcactgacttccgcaaacgtatcttcgggga 367
|||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 12 tccccttcgtgagggtcttcctcgcatggtcactgacttccgcaaacgtatcttcgggga 71
Query: 368 ccaggaagggtccaccgagtcagctggtggcctttcttaagtgctcaaaacttgtt-gaa 426
||| | || ||||| ||| |||||||||||||||||| ||| ||| |||||||| |||
Sbjct: 72 ccaaggagaatccactgaggcagctggtggcctttctt-agtcctc--aacttgttggaa 128
Query: 427 gtgacacgtttg 438
||||||||||||
Sbjct: 129 gtgacacgtttg 140
>gb|CW155314.1|CW155314 104_557_11146073_148_36360_067 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11146073, DNA
sequence
Length = 683
Score = 127 bits (64), Expect = 1e-027
Identities = 169/204 (82%)
Strand = Plus / Plus
Query: 119 ggagcacattgggccgttcaacctcggcaaccctggagaattcagcatgctggagctggc 178
||||||| | || ||||||||||| || ||||| || || |||| ||||||||||||||
Sbjct: 11 ggagcacgtgggcccgttcaacctggggaacccgggcgagttcacgatgctggagctggc 70
Query: 179 taaggtggtccaggacaccatcgacccagaggcgcacatcgagttccgtccgaacaccgc 238
|||||||| ||||| |||||||||| | |||| ||||| |||||| || ||||||||
Sbjct: 71 caaggtggtgcaggagaccatcgaccggggcgcgcgcatcgtgttccgccccaacaccgc 130
Query: 239 agatgatccgcacaagcgcaagcctgacatcagccgcgcgaaagagctcctcggctggga 298
|| || ||||||||||||||||| ||||||| |||||| || |||| || || |||||
Sbjct: 131 cgacgacccgcacaagcgcaagccggacatcacccgcgccaagcagctgctggggtggga 190
Query: 299 gcccaaggttcccctccgtgaggg 322
||||||||| || ||||| |||||
Sbjct: 191 gcccaaggtgccgctccgcgaggg 214
>gb|BM328675.1|BM328675 PIC1_25_B12.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 504
Score = 125 bits (63), Expect = 5e-027
Identities = 132/155 (85%)
Strand = Plus / Plus
Query: 216 atcgagttccgtccgaacaccgcagatgatccgcacaagcgcaagcctgacatcagccgc 275
||||||||||||| ||||||| || || || |||||||||||||| |||||||||||
Sbjct: 19 atcgagttccgtcagaacacccaggacgacccacacaagcgcaagcccgacatcagccgt 78
Query: 276 gcgaaagagctcctcggctgggagcccaaggttcccctccgtgagggccttccccgcatg 335
|| || |||||||| || |||||||| ||| | |||||||| ||||||||||||| ||||
Sbjct: 79 gccaaggagctccttgggtgggagccgaagatccccctccgcgagggccttcccctcatg 138
Query: 336 gtcactgacttccgcaaacgtatcttcggggacca 370
|||| |||||||||||| || ||||| || |||||
Sbjct: 139 gtcagtgacttccgcaagcgcatctttggcgacca 173
>gb|BG052710.1|BG052710 RHIZ2_28_G06.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 500
Score = 117 bits (59), Expect = 1e-024
Identities = 131/155 (84%)
Strand = Plus / Plus
Query: 216 atcgagttccgtccgaacaccgcagatgatccgcacaagcgcaagcctgacatcagccgc 275
||||||||||||| ||||||| || || || |||||||||||||| |||||||||||
Sbjct: 13 atcgagttccgtcagaacacccaggacgacccacacaagcgcaagcccgacatcagccgt 72
Query: 276 gcgaaagagctcctcggctgggagcccaaggttcccctccgtgagggccttccccgcatg 335
|| || |||||||| || |||||||| ||| | |||||||| ||||||||||||| ||||
Sbjct: 73 gccaaggagctccttgggtgggagccgaagatccccctccgcgagggccttcccctcatg 132
Query: 336 gtcactgacttccgcaaacgtatcttcggggacca 370
|||| ||||||||||| || ||||| || |||||
Sbjct: 133 gtcagcgacttccgcaagcgcatctttggcgacca 167
>gb|BM330970.1|BM330970 PIC1_67_H03.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 459
Score = 115 bits (58), Expect = 5e-024
Identities = 106/122 (86%)
Strand = Plus / Plus
Query: 249 cacaagcgcaagcctgacatcagccgcgcgaaagagctcctcggctgggagcccaaggtt 308
|||||||||||||| ||||||||||| || || |||||||| || |||||||| ||| |
Sbjct: 7 cacaagcgcaagcccgacatcagccgtgccaaggagctccttgggtgggagccgaagatc 66
Query: 309 cccctccgtgagggccttccccgcatggtcactgacttccgcaaacgtatcttcggggac 368
|||||||| ||||||||||||| |||||||| |||||||||||| || ||||| || |||
Sbjct: 67 cccctccgcgagggccttcccctcatggtcagtgacttccgcaagcgcatctttggcgac 126
Query: 369 ca 370
||
Sbjct: 127 ca 128
>gb|CF772893.1|CF772893 DSBF1_40_F07.g1_A010 Drought-stressed before flowering Sorghum
bicolor cDNA clone DSBF1_40_F07_A010 3', mRNA sequence
Length = 393
Score = 115 bits (58), Expect = 5e-024
Identities = 106/122 (86%)
Strand = Plus / Plus
Query: 249 cacaagcgcaagcctgacatcagccgcgcgaaagagctcctcggctgggagcccaaggtt 308
|||||||||||||| ||||||||||| || || |||||||| || |||||||| ||| |
Sbjct: 14 cacaagcgcaagcccgacatcagccgtgccaaggagctccttgggtgggagccgaagatc 73
Query: 309 cccctccgtgagggccttccccgcatggtcactgacttccgcaaacgtatcttcggggac 368
|||||||| ||||||||||||| |||||||| |||||||||||| || ||||| || |||
Sbjct: 74 cccctccgcgagggccttcccctcatggtcagtgacttccgcaagcgcatctttggcgac 133
Query: 369 ca 370
||
Sbjct: 134 ca 135
>gb|CF426874.1|CF426874 PH1_2_E09.b1_A002 Phosphorous-deficient seedlings Sorghum bicolor
cDNA clone PH1_2_E09_A002 3', mRNA sequence
Length = 598
Score = 101 bits (51), Expect = 8e-020
Identities = 60/63 (95%)
Strand = Plus / Plus
Query: 6 gttgctcaggcgctgaggaaggagcctttgacagtctatggtgatggcaagcagactagg 65
||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||
Sbjct: 344 gttgctcaggcgctgaggaaggagcctttgacagtttatggcgatggcaaacagactagg 403
Query: 66 agc 68
|||
Sbjct: 404 agc 406
>gb|AW923940.1|AW923940 WS1_31_D05.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 408
Score = 99.6 bits (50), Expect = 3e-019
Identities = 140/170 (82%)
Strand = Plus / Plus
Query: 6 gttgctcaggcgctgaggaaggagcctttgacagtctatggtgatggcaagcagactagg 65
||||||||||| |||||||||||||| ||||| || ||||||||||| ||||| || |||
Sbjct: 233 gttgctcaggctctgaggaaggagcccttgacggtttatggtgatggaaagcaaaccagg 292
Query: 66 agctttcaatatgtctcagatttggtggaagggctgatgaagctcatggaaggggagcac 125
|| || |||||||| || ||| |||| || || ||||||||||| |||||||| || ||
Sbjct: 293 agtttccaatatgtttctgatctggttgagggtctgatgaagctgatggaaggcgaccat 352
Query: 126 attgggccgttcaacctcggcaaccctggagaattcagcatgctggagct 175
| || || |||||||| || ||||| || || |||| |||||| |||||
Sbjct: 353 gtaggaccattcaacctgggtaaccccggcgagttcaccatgcttgagct 402
>gb|CW241293.1|CW241293 104_700_11218687_148_37542_026 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11218687, DNA
sequence
Length = 611
Score = 93.7 bits (47), Expect = 2e-017
Identities = 119/143 (83%)
Strand = Plus / Plus
Query: 180 aaggtggtccaggacaccatcgacccagaggcgcacatcgagttccgtccgaacaccgca 239
|||||||| ||||| |||||||||| | |||| ||||| |||||| || ||||||||
Sbjct: 2 aaggtggtgcaggagaccatcgaccggggcgcgcgcatcgtgttccgccccaacaccgcc 61
Query: 240 gatgatccgcacaagcgcaagcctgacatcagccgcgcgaaagagctcctcggctgggag 299
|| || ||||||||||||||||| ||||||| |||||| || |||| || || ||||||
Sbjct: 62 gacgacccgcacaagcgcaagccggacatcacccgcgccaagcagctgctggggtgggag 121
Query: 300 cccaaggttcccctccgtgaggg 322
|||||||| || ||||| |||||
Sbjct: 122 cccaaggtgccgctccgcgaggg 144
>gb|BZ332081.1|BZ332081 hx25c05.b1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone hx25c05 5', DNA sequence
Length = 439
Score = 91.7 bits (46), Expect = 8e-017
Identities = 97/109 (88%), Gaps = 5/109 (4%)
Strand = Plus / Plus
Query: 333 atggtcactgacttccgcaaacgta-tcttcggggaccaggaagggtccaccgagtcagc 391
||||||||||||||||||||||||| ||||||||||||| | || ||||| ||| ||||
Sbjct: 1 atggtcactgacttccgcaaacgtattcttcggggaccaaggagaatccactgaggcagc 60
Query: 392 tggtggcctttcttaagtgctcaaaacttgtt-gaagtgacacgtttgt 439
|||||||||||||| ||| ||| |||||||| ||||||||||||||||
Sbjct: 61 tggtggcctttctt-agtcctc--aacttgttggaagtgacacgtttgt 106
>gb|CX612323.1|CX612323 GABR1_1_F11.g1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_1_F11_A002 5', mRNA sequence
Length = 777
Score = 87.7 bits (44), Expect = 1e-015
Identities = 89/104 (85%)
Strand = Plus / Plus
Query: 6 gttgctcaggcgctgaggaaggagcctttgacagtctatggtgatggcaagcagactagg 65
||||||||||| |||||||||||||| ||||| || ||||||||||| ||||| || |||
Sbjct: 670 gttgctcaggctctgaggaaggagcccttgacggtttatggtgatggaaagcaaaccagg 729
Query: 66 agctttcaatatgtctcagatttggtggaagggctgatgaagct 109
|| || |||||||| || ||| |||| || || |||||||||||
Sbjct: 730 agtttccaatatgtttctgatctggttgagggtctgatgaagct 773
>gb|BG103104.1|BG103104 RHIZ2_18_C01.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 386
Score = 85.7 bits (43), Expect = 5e-015
Identities = 91/107 (85%)
Strand = Plus / Plus
Query: 264 gacatcagccgcgcgaaagagctcctcggctgggagcccaaggttcccctccgtgagggc 323
||||||||||| || || |||||||| || |||||||| ||| | |||||||| ||||||
Sbjct: 3 gacatcagccgtgccaaggagctccttgggtgggagccgaagatccccctccgcgagggc 62
Query: 324 cttccccgcatggtcactgacttccgcaaacgtatcttcggggacca 370
||||||| |||||||| ||||||||||| || ||||| || |||||
Sbjct: 63 cttcccctcatggtcagcgacttccgcaagcgcatctttggcgacca 109
>gb|CW241292.1|CW241292 104_700_11218687_116_37545_026 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11218687, DNA
sequence
Length = 593
Score = 81.8 bits (41), Expect = 7e-014
Identities = 95/113 (84%)
Strand = Plus / Minus
Query: 210 gcgcacatcgagttccgtccgaacaccgcagatgatccgcacaagcgcaagcctgacatc 269
|||| ||||| |||||| || |||||||| || || ||||||||||||||||| ||||||
Sbjct: 581 gcgcgcatcgtgttccgccccaacaccgccgacgacccgcacaagcgcaagccggacatc 522
Query: 270 agccgcgcgaaagagctcctcggctgggagcccaaggttcccctccgtgaggg 322
| |||||| || |||| || || |||||||||||||| || ||||| |||||
Sbjct: 521 acccgcgccaagcagctgctggggtgggagcccaaggtgccgctccgcgaggg 469
>gb|BZ337599.1|BZ337599 ia89f08.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone ia89f08 5', DNA sequence
Length = 717
Score = 63.9 bits (32), Expect = 2e-008
Identities = 59/68 (86%)
Strand = Plus / Minus
Query: 12 caggcgctgaggaaggagcctttgacagtctatggtgatggcaagcagactaggagcttt 71
||||| |||||||||||||| ||||| || ||||||||||| ||||| || ||||| ||
Sbjct: 165 caggctctgaggaaggagcccttgacggtttatggtgatggaaagcaaaccaggagtttc 106
Query: 72 caatatgt 79
||||||||
Sbjct: 105 caatatgt 98
>gb|CW264924.1|CW264924 104_734_11231578_148_35262_047 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11231578, DNA
sequence
Length = 719
Score = 54.0 bits (27), Expect = 2e-005
Identities = 51/59 (86%)
Strand = Plus / Minus
Query: 12 caggcgctgaggaaggagcctttgacagtctatggtgatggcaagcagactaggagctt 70
||||||||||||||||| || ||||| || || || || ||||||||||| ||||||||
Sbjct: 718 caggcgctgaggaaggatcccttgacggtgtacggcgacggcaagcagacgaggagctt 660
>gb|CN149962.1|CN149962 WOUND1_66_B07.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_66_B07_A002 3', mRNA sequence
Length = 836
Score = 52.0 bits (26), Expect = 7e-005
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 6 gttgctcaggcgctgaggaaggagcctttgacagtctatggtgatg 51
||||||||||| ||||||||||||| ||||| || ||||||||||
Sbjct: 630 gttgctcaggcattgaggaaggagccgttgacggtttatggtgatg 675
>gb|BI098154.1|BI098154 IP1_32_G07.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor
cDNA, mRNA sequence
Length = 593
Score = 44.1 bits (22), Expect = 0.016
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 6 gttgctcaggcgctgaggaaggagcctttgacagtctatggtgatg 51
|||||||||| ||||||||||||| ||||| || ||||||||||
Sbjct: 31 gttgctcaggaattgaggaaggagccgttgacggtttatggtgatg 76
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 123,972
Number of Sequences: 832831
Number of extensions: 123972
Number of successful extensions: 33615
Number of sequences better than 0.5: 55
Number of HSP's better than 0.5 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 33488
Number of HSP's gapped (non-prelim): 78
length of query: 651
length of database: 491,359,669
effective HSP length: 19
effective length of query: 632
effective length of database: 475,535,880
effective search space: 300538676160
effective search space used: 300538676160
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)