BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3510875.2.1
(707 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CD430191.1|CD430191 ETH1_17_D09.g1_A002 Ethylene-treated... 432 e-119
gb|BE358668.1|BE358668 DG1_30_A12.g1_A002 Dark Grown 1 (DG1... 412 e-113
gb|CD430149.1|CD430149 ETH1_17_D09.b1_A002 Ethylene-treated... 365 4e-099
gb|BE358476.1|BE358476 DG1_30_A12.b1_A002 Dark Grown 1 (DG1... 361 6e-098
gb|CW302826.1|CW302826 104_787_11464921_148_35672_013 Sorgh... 349 2e-094
gb|BG558971.1|BG558971 RHIZ2_53_A03.g1_A003 Rhizome2 (RHIZ2... 343 1e-092
gb|BG559288.1|BG559288 RHIZ2_53_A03.b1_A003 Rhizome2 (RHIZ2... 256 2e-066
gb|CW302825.1|CW302825 104_787_11464921_116_35676_013 Sorgh... 127 1e-027
gb|CW043628.1|CW043628 104_279_10508482_115_30245 Sorghum m... 44 0.017
gb|CW191575.1|CW191575 104_613_11178567_116_36939_054 Sorgh... 44 0.017
gb|CW282750.1|CW282750 104_758_11408878_148_35472_081 Sorgh... 44 0.017
gb|CW310738.1|CW310738 104_800_11469871_116_35753_032 Sorgh... 44 0.017
gb|CW310739.1|CW310739 104_800_11469871_148_35757_032 Sorgh... 44 0.017
gb|CX606815.1|CX606815 ANR1_5_D02.b1_A002 Anaerobic roots S... 44 0.017
gb|CX606906.1|CX606906 ANR1_5_D02.g1_A002 Anaerobic roots S... 44 0.017
gb|CX609797.1|CX609797 ANR1_14_F11.g1_A002 Anaerobic roots ... 44 0.017
gb|CL150235.1|CL150235 104_331_10778376_116_31356_312 Sorgh... 42 0.068
gb|CL151485.1|CL151485 104_334_10779284_116_31362_068 Sorgh... 42 0.068
gb|CW031206.1|CW031206 104_259_10500672_114_30397 Sorghum m... 42 0.068
gb|CW066695.1|CW066695 104_313_10523813_115_30149 Sorghum m... 42 0.068
gb|CW071629.1|CW071629 104_323_10591605_116_30477 Sorghum m... 42 0.068
gb|CW108803.1|CW108803 104_480_11097718_148_34498_085 Sorgh... 42 0.068
gb|CW163523.1|CW163523 104_571_11151506_148_36455_011 Sorgh... 42 0.068
gb|CW188528.1|CW188528 104_608_11173082_148_36735_009 Sorgh... 42 0.068
gb|CW199128.1|CW199128 104_624_11183347_148_36850_078 Sorgh... 42 0.068
gb|CW266219.1|CW266219 104_735_11232307_148_35265_066 Sorgh... 42 0.068
gb|CW397743.1|CW397743 fsbb001f086o04f0 Sorghum methylation... 42 0.068
gb|CW397744.1|CW397744 fsbb001f086o04k0 Sorghum methylation... 42 0.068
gb|CW459923.1|CW459923 fsbb001f206o12k0 Sorghum methylation... 42 0.068
gb|CW498314.1|CW498314 fsbb001f291h23f0 Sorghum methylation... 42 0.068
gb|AW745074.1|AW745074 LG1_386_D11.b1_A002 Light Grown 1 (L... 42 0.068
gb|AW745152.1|AW745152 LG1_386_D11.g1_A002 Light Grown 1 (L... 42 0.068
gb|BE357190.1|BE357190 DG1_147_D01.g1_A002 Dark Grown 1 (DG... 42 0.068
gb|BG559979.1|BG559979 RHIZ2_68_A05.b1_A003 Rhizome2 (RHIZ2... 42 0.068
gb|BG560069.1|BG560069 RHIZ2_69_A05.b1_A003 Rhizome2 (RHIZ2... 42 0.068
gb|CD427750.1|CD427750 ETH1_34_A08.b1_A002 Ethylene-treated... 42 0.068
gb|CX611552.1|CX611552 ANR1_25_G07.b1_A002 Anaerobic roots ... 42 0.068
gb|CX611638.1|CX611638 ANR1_25_G07.g1_A002 Anaerobic roots ... 42 0.068
>gb|CD430191.1|CD430191 ETH1_17_D09.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_17_D09_A002 5', mRNA sequence
Length = 761
Score = 432 bits (218), Expect = e-119
Identities = 372/423 (87%), Gaps = 3/423 (0%)
Strand = Plus / Minus
Query: 266 cttgacgttgacggtgtactggacgacggtggtcccggaggtggcgccggagtcgatggt 325
|||||||||||||||||||||||||||||| ||||| |||||||||||| || |||||
Sbjct: 548 cttgacgttgacggtgtactggacgacggtctccccggtggtggcgccggaatcaatggt 489
Query: 326 gtgcgcctgcacgtacccgcgcgccatgcggaacttgccgctgccgccgacgatgctcat 385
||||||||| || || || |||||||||||||| |||||||||||||||||||||||
Sbjct: 488 gtgcgcctggacatagcccttggccatgcggaactttccgctgccgccgacgatgctcat 429
Query: 386 ctcgcggacgtcgctgagcacctcgttgcggccaaggatggagagcgtgctgccgttgtg 445
||||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct: 428 ctcgcggacgtcggtgagcacctcgttccggccgaggatggagagcgtgctgccgttgtg 369
Query: 446 ctcgccggccgtgaacacgaagttcatgaccatgaggaggccgaacgtctgctggtccgc 505
|||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct: 368 gtcgccggcggtgaacacgaagttcatcaccatgaggaggccgaacgtggtctggtccgc 309
Query: 506 gaacgtgtaggtgccctgggcgcggcccacctccgtgcccgcggcacgcgtgggacccgt 565
||||||||||||||||||||||||||| | ||| ||||| | | |||||||| |||||
Sbjct: 308 gaacgtgtaggtgccctgggcgcggccgatctcggtgccggacgaccgcgtgggccccgt 249
Query: 566 cgtcagcgggtcgtcgatggccaccaccgcgccgaagttggtggacgacgtgttggagga 625
|| || |||||||||||||||||||| ||||||||| |||||| || |||||||| ||
Sbjct: 248 ggtgagagggtcgtcgatggccaccacggcgccgaaggaggtggaggaggtgttggacga 189
Query: 626 cgccgnctgcgcgatgcgcaccgccgtcggg---ttcgtccccgccacgacgtcgtggaa 682
||||| ||||||||| |||||||| || ||| |||||||||||||| |||||||||
Sbjct: 188 cgccgcctgcgcgatccgcaccgcggttggggacgacgtccccgccacgatgtcgtggaa 129
Query: 683 gta 685
|||
Sbjct: 128 gta 126
Score = 40.1 bits (20), Expect = 0.27
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 175 aggtgtgtacaaagcagccggaga 198
||||||||||||||| ||||||||
Sbjct: 655 aggtgtgtacaaagctgccggaga 632
>gb|BE358668.1|BE358668 DG1_30_A12.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 586
Score = 412 bits (208), Expect = e-113
Identities = 370/423 (87%), Gaps = 3/423 (0%)
Strand = Plus / Minus
Query: 266 cttgacgttgacggtgtactggacgacggtggtcccggaggtggcgccggagtcgatggt 325
|||||||||||||||||||||||||||||| ||||| |||||||||||| || |||||
Sbjct: 477 cttgacgttgacggtgtactggacgacggtctccccggtggtggcgccggaatcaatggt 418
Query: 326 gtgcgcctgcacgtacccgcgcgccatgcggaacttgccgctgccgccgacgatgctcat 385
||||||||| || || || |||||||||||||| |||||||||||||||||||||||
Sbjct: 417 gtgcgcctggacatagcccttggccatgcggaactttccgctgccgccgacgatgctcat 358
Query: 386 ctcgcggacgtcgctgagcacctcgttgcggccaaggatggagagcgtgctgccgttgtg 445
||||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct: 357 ctcgcggacgtcggtgagcacctcgttccggccgaggatggagagcgtgctgccgttgtg 298
Query: 446 ctcgccggccgtgaacacgaagttcatgaccatgaggaggccgaacgtctgctggtccgc 505
|||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct: 297 gtcgccggcggtgaacacgaagttcatcaccatgaggaggccgaacgtggtctggtccgc 238
Query: 506 gaacgtgtaggtgccctgggcgcggcccacctccgtgcccgcggcacgcgtgggacccgt 565
||||||||||||||||||||||||||| | ||| ||||| | | |||||||| |||||
Sbjct: 237 gaacgtgtaggtgccctgggcgcggccgatctcggtgccggacgaccgcgtgggccccgt 178
Query: 566 cgtcagcgggtcgtcgatggccaccaccgcgccgaagttggtggacgacgtgttggagga 625
|| || |||||||||||||||||||| ||||| | |||||| || |||||||| ||
Sbjct: 177 ggtgagagggtcgtcgatggccaccacggcgccnnaagaggtggaggaggtgttggacga 118
Query: 626 cgccgnctgcgcgatgcgcaccgccgtcggg---ttcgtccccgccacgacgtcgtggaa 682
||||||||||||||| |||||||| || ||| |||||||||||||| |||||||||
Sbjct: 117 cgccgnctgcgcgatccgcaccgcggttggggacgacgtccccgccacgatgtcgtggaa 58
Query: 683 gta 685
|||
Sbjct: 57 gta 55
>gb|CD430149.1|CD430149 ETH1_17_D09.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_17_D09_A002 3', mRNA sequence
Length = 544
Score = 365 bits (184), Expect = 4e-099
Identities = 291/327 (88%)
Strand = Plus / Minus
Query: 266 cttgacgttgacggtgtactggacgacggtggtcccggaggtggcgccggagtcgatggt 325
|||||||||||||||||||||||||||||| ||||| |||||||||||| || |||||
Sbjct: 331 cttgacgttgacggtgtactggacgacggtctccccggtggtggcgccggaatcaatggt 272
Query: 326 gtgcgcctgcacgtacccgcgcgccatgcggaacttgccgctgccgccgacgatgctcat 385
||||||||| || || || |||||||||||||| |||||||||||||||||||||||
Sbjct: 271 gtgcgcctggacatagcccttggccatgcggaactttccgctgccgccgacgatgctcat 212
Query: 386 ctcgcggacgtcgctgagcacctcgttgcggccaaggatggagagcgtgctgccgttgtg 445
||||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct: 211 ctcgcggacgtcggtgagcacctcgttccggccgaggatggagagcgtgctgccgttgtg 152
Query: 446 ctcgccggccgtgaacacgaagttcatgaccatgaggaggccgaacgtctgctggtccgc 505
|||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct: 151 gtcgccggcggtgaacacgaagttcatcaccatgaggaggccgaacgtggtctggtccgc 92
Query: 506 gaacgtgtaggtgccctgggcgcggcccacctccgtgcccgcggcacgcgtgggacccgt 565
|||||||||||||||||| |||||||| | ||| ||||| | | |||||||| |||||
Sbjct: 91 gaacgtgtaggtgccctgngcgcggccgatctcggtgccggacgaccgcgtgggccccgt 32
Query: 566 cgtcagcgggtcgtcgatggccaccac 592
|| || ||||||||||||||||||||
Sbjct: 31 ggtgagagggtcgtcgatggccaccac 5
Score = 40.1 bits (20), Expect = 0.27
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 175 aggtgtgtacaaagcagccggaga 198
||||||||||||||| ||||||||
Sbjct: 438 aggtgtgtacaaagctgccggaga 415
>gb|BE358476.1|BE358476 DG1_30_A12.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 448
Score = 361 bits (182), Expect = 6e-098
Identities = 297/335 (88%), Gaps = 3/335 (0%)
Strand = Plus / Minus
Query: 354 cggaacttgccgctgccgccgacgatgctcatctcgcggacgtcgctgagcacctcgttg 413
|||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 448 cggaactttccgctgccgccgacgatgctcatctcgcggacgtcggtgagcacctcgttc 389
Query: 414 cggccaaggatggagagcgtgctgccgttgtgctcgccggccgtgaacacgaagttcatg 473
||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct: 388 cggccgaggatggagagcgtgctgccgttgtggtcgccggcggtgaacacgaagttcatc 329
Query: 474 accatgaggaggccgaacgtctgctggtccgcgaacgtgtaggtgccctgggcgcggccc 533
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 328 accatgaggaggccgaacgtggtctggtccgcgaacgtgtaggtgccctgggcgcggccg 269
Query: 534 acctccgtgcccgcggcacgcgtgggacccgtcgtcagcgggtcgtcgatggccaccacc 593
| ||| ||||| | | |||||||| ||||| || || ||||||||||||||||||||
Sbjct: 268 atctcggtgccggacgaccgcgtgggccccgtggtgagagggtcgtcgatggccaccacg 209
Query: 594 gcgccgaagttggtggacgacgtgttggaggacgccgnctgcgcgatgcgcaccgccgtc 653
||||||||| |||||| || |||||||| ||||||| ||||||||| |||||||| ||
Sbjct: 208 gcgccgaaggaggtggaggaggtgttggacgacgccgcctgcgcgatccgcaccgcggtt 149
Query: 654 ggg---ttcgtccccgccacgacgtcgtggaagta 685
||| |||||||||||||| ||||||||||||
Sbjct: 148 ggggacgacgtccccgccacgatgtcgtggaagta 114
>gb|CW302826.1|CW302826 104_787_11464921_148_35672_013 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11464921, DNA
sequence
Length = 682
Score = 349 bits (176), Expect = 2e-094
Identities = 288/325 (88%), Gaps = 3/325 (0%)
Strand = Plus / Minus
Query: 364 cgctgccgccgacgatgctcatctcgcggacgtcgctgagcacctcgttgcggccaagga 423
||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||||
Sbjct: 682 cgctgccgccgacgatgctcatctcgcggacgtcggtgagcacctcgttccggccgagga 623
Query: 424 tggagagcgtgctgccgttgtgctcgccggccgtgaacacgaagttcatgaccatgagga 483
|||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||
Sbjct: 622 tggagagcgtgctgccgttgtggtcgccggcggtgaacacgaagttcatcaccatgagga 563
Query: 484 ggccgaacgtctgctggtccgcgaacgtgtaggtgccctgggcgcggcccacctccgtgc 543
|||||||||| |||||||||||||||||||||||||||||||||||| | ||| ||||
Sbjct: 562 ggccgaacgtggtctggtccgcgaacgtgtaggtgccctgggcgcggccgatctcggtgc 503
Query: 544 ccgcggcacgcgtgggacccgtcgtcagcgggtcgtcgatggccaccaccgcgccgaagt 603
| | | |||||||| ||||| || || |||||||||||||||||||| |||||||||
Sbjct: 502 cggacgaccgcgtgggccccgtggtgagagggtcgtcgatggccaccacggcgccgaagg 443
Query: 604 tggtggacgacgtgttggaggacgccgnctgcgcgatgcgcaccgccgtcggg---ttcg 660
|||||| || |||||||| ||||||| ||||||||| |||||||| || ||| ||
Sbjct: 442 aggtggaggaggtgttggacgacgccgcctgcgcgatccgcaccgcggttggggacgacg 383
Query: 661 tccccgccacgacgtcgtggaagta 685
|||||||||||| ||||||||||||
Sbjct: 382 tccccgccacgatgtcgtggaagta 358
>gb|BG558971.1|BG558971 RHIZ2_53_A03.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 472
Score = 343 bits (173), Expect = 1e-092
Identities = 242/265 (91%)
Strand = Plus / Minus
Query: 266 cttgacgttgacggtgtactggacgacggtggtcccggaggtggcgccggagtcgatggt 325
|||||||||||||||||||||||||||||| ||||| |||||||||||| || |||||
Sbjct: 265 cttgacgttgacggtgtactggacgacggtctccccggtggtggcgccggaatcaatggt 206
Query: 326 gtgcgcctgcacgtacccgcgcgccatgcggaacttgccgctgccgccgacgatgctcat 385
||||||||| || || || ||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gtgcgcctggacatagcccttggccatgcggaacttgccgctgccgccgacgatgctcat 146
Query: 386 ctcgcggacgtcgctgagcacctcgttgcggccaaggatggagagcgtgctgccgttgtg 445
|||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||
Sbjct: 145 ctcgcggacgtcgctgaggacctcgttccggccgaggatggagagcgtgctgccgttgtg 86
Query: 446 ctcgccggccgtgaacacgaagttcatgaccatgaggaggccgaacgtctgctggtccgc 505
|||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct: 85 gtcgccggcggtgaacacgaagttcatcaccatgaggaggccgaacgtggactggtccgc 26
Query: 506 gaacgtgtaggtgccctgggcgcgg 530
||||||||| |||||||||||||||
Sbjct: 25 gaacgtgtaagtgccctgggcgcgg 1
Score = 40.1 bits (20), Expect = 0.27
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 175 aggtgtgtacaaagcagccggaga 198
||||||||||||||| ||||||||
Sbjct: 349 aggtgtgtacaaagctgccggaga 326
>gb|BG559288.1|BG559288 RHIZ2_53_A03.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 381
Score = 256 bits (129), Expect = 2e-066
Identities = 229/262 (87%), Gaps = 3/262 (1%)
Strand = Plus / Minus
Query: 427 agagcgtgctgccgttgtgctcgccggccgtgaacacgaagttcatgaccatgaggaggc 486
||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||
Sbjct: 381 agagcgtgctgccgttgtggtcgccggcggtgaacacgaagttcatcaccatgaggaggc 322
Query: 487 cgaacgtctgctggtccgcgaacgtgtaggtgccctgggcgcggcccacctccgtgcccg 546
||||||| |||||||||||||||||||||||||||||||||||| | ||| ||||| |
Sbjct: 321 cgaacgtggactggtccgcgaacgtgtaggtgccctgggcgcggccgatctcggtgccgg 262
Query: 547 cggcacgcgtgggacccgtcgtcagcgggtcgtcgatggccaccaccgcgccgaagttgg 606
| |||||||| |||||||| || |||||||||||||||||||| ||||||||| ||
Sbjct: 261 acgaccgcgtgggccccgtcgtgagagggtcgtcgatggccaccacggcgccgaaggagg 202
Query: 607 tggacgacgtgttggaggacgccgnctgcgcgatgcgcaccgccgtcggg---ttcgtcc 663
|||| || |||||||| ||||||| ||||||||| |||||||| || ||| |||||
Sbjct: 201 tggaggaggtgttggacgacgccgcctgcgcgatccgcaccgcggttggggacgacgtcc 142
Query: 664 ccgccacgacgtcgtggaagta 685
||||||||| ||||||||||||
Sbjct: 141 ccgccacgatgtcgtggaagta 120
>gb|CW302825.1|CW302825 104_787_11464921_116_35676_013 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11464921, DNA
sequence
Length = 719
Score = 127 bits (64), Expect = 1e-027
Identities = 109/124 (87%)
Strand = Plus / Plus
Query: 266 cttgacgttgacggtgtactggacgacggtggtcccggaggtggcgccggagtcgatggt 325
|||||||||||||||||||||||||||||| ||||| |||||||||||| || |||||
Sbjct: 596 cttgacgttgacggtgtactggacgacggtctccccggtggtggcgccggaatcaatggt 655
Query: 326 gtgcgcctgcacgtacccgcgcgccatgcggaacttgccgctgccgccgacgatgctcat 385
||||||||| || || || | |||||||||||| |||||||||||||||||||||||
Sbjct: 656 gtgcgcctggacatagccctttggcatgcggaactttccgctgccgccgacgatgctcat 715
Query: 386 ctcg 389
||||
Sbjct: 716 ctcg 719
Score = 40.1 bits (20), Expect = 0.27
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 175 aggtgtgtacaaagcagccggaga 198
||||||||||||||| ||||||||
Sbjct: 489 aggtgtgtacaaagctgccggaga 512
>gb|CW043628.1|CW043628 104_279_10508482_115_30245 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10508482, DNA
sequence
Length = 596
Score = 44.1 bits (22), Expect = 0.017
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 339 tacccgcgcgccatgcggaacttgccgctgccgccgacgatg 380
||||| ||||| | ||||| ||||||| ||||||||||||||
Sbjct: 205 taccctcgcgcgaagcggagcttgccggtgccgccgacgatg 246
>gb|CW191575.1|CW191575 104_613_11178567_116_36939_054 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11178567, DNA
sequence
Length = 677
Score = 44.1 bits (22), Expect = 0.017
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 339 tacccgcgcgccatgcggaacttgccgctgccgccgacgatg 380
|||||||||||||| |||||| ||| ||||||||||||||
Sbjct: 230 tacccgcgcgccatccggaacacgcccgtgccgccgacgatg 189
>gb|CW282750.1|CW282750 104_758_11408878_148_35472_081 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11408878, DNA
sequence
Length = 510
Score = 44.1 bits (22), Expect = 0.017
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 339 tacccgcgcgccatgcggaacttgccgctgccgccgacgatg 380
||||| ||||| | ||||| ||||||| ||||||||||||||
Sbjct: 123 taccctcgcgcgaagcggagcttgccggtgccgccgacgatg 164
>gb|CW310738.1|CW310738 104_800_11469871_116_35753_032 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11469871, DNA
sequence
Length = 707
Score = 44.1 bits (22), Expect = 0.017
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 339 tacccgcgcgccatgcggaacttgccgctgccgccgacgatg 380
||||| ||||| | ||||| ||||||| ||||||||||||||
Sbjct: 365 taccctcgcgcgaagcggagcttgccggtgccgccgacgatg 324
>gb|CW310739.1|CW310739 104_800_11469871_148_35757_032 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11469871, DNA
sequence
Length = 659
Score = 44.1 bits (22), Expect = 0.017
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 339 tacccgcgcgccatgcggaacttgccgctgccgccgacgatg 380
||||| ||||| | ||||| ||||||| ||||||||||||||
Sbjct: 548 taccctcgcgcgaagcggagcttgccggtgccgccgacgatg 589
>gb|CX606815.1|CX606815 ANR1_5_D02.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_5_D02_A002 3', mRNA sequence
Length = 698
Score = 44.1 bits (22), Expect = 0.017
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 339 tacccgcgcgccatgcggaacttgccgctgccgccgacgatg 380
||||| ||||| | ||||| ||||||| ||||||||||||||
Sbjct: 375 taccctcgcgcgaagcggagcttgccggtgccgccgacgatg 334
>gb|CX606906.1|CX606906 ANR1_5_D02.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_5_D02_A002 5', mRNA sequence
Length = 809
Score = 44.1 bits (22), Expect = 0.017
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 339 tacccgcgcgccatgcggaacttgccgctgccgccgacgatg 380
||||| ||||| | ||||| ||||||| ||||||||||||||
Sbjct: 500 taccctcgcgcgaagcggagcttgccggtgccgccgacgatg 459
>gb|CX609797.1|CX609797 ANR1_14_F11.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_14_F11_A002 5', mRNA sequence
Length = 768
Score = 44.1 bits (22), Expect = 0.017
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 339 tacccgcgcgccatgcggaacttgccgctgccgccgacgatg 380
||||| ||||| | ||||| ||||||| ||||||||||||||
Sbjct: 503 taccctcgcgcgaagcggagcttgccggtgccgccgacgatg 462
>gb|CL150235.1|CL150235 104_331_10778376_116_31356_312 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10778376, DNA
sequence
Length = 662
Score = 42.1 bits (21), Expect = 0.068
Identities = 51/61 (83%)
Strand = Plus / Minus
Query: 334 gcacgtacccgcgcgccatgcggaacttgccgctgccgccgacgatgctcatctcgcgga 393
||||||||||| ||||| |||||| ||||| |||||||||||| | ||||||||||
Sbjct: 531 gcacgtacccggtggccatccggaacgtgccggtgccgccgacgacggggatctcgcgga 472
Query: 394 c 394
|
Sbjct: 471 c 471
>gb|CL151485.1|CL151485 104_334_10779284_116_31362_068 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10779284, DNA
sequence
Length = 699
Score = 42.1 bits (21), Expect = 0.068
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 509 cgtgtaggtgccctgggcgcg 529
|||||||||||||||||||||
Sbjct: 187 cgtgtaggtgccctgggcgcg 167
>gb|CW031206.1|CW031206 104_259_10500672_114_30397 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10500672, DNA
sequence
Length = 633
Score = 42.1 bits (21), Expect = 0.068
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 338 gtacccgcgcgccatgcggaacttgccgctgccgccgacgatgct 382
|||||||||||| | |||| |||||| ||||||||||||||||
Sbjct: 325 gtacccgcgcgcgaaccggagcttgcccgtgccgccgacgatgct 281
>gb|CW066695.1|CW066695 104_313_10523813_115_30149 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10523813, DNA
sequence
Length = 435
Score = 42.1 bits (21), Expect = 0.068
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 509 cgtgtaggtgccctgggcgcg 529
|||||||||||||||||||||
Sbjct: 140 cgtgtaggtgccctgggcgcg 160
>gb|CW071629.1|CW071629 104_323_10591605_116_30477 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10591605, DNA
sequence
Length = 672
Score = 42.1 bits (21), Expect = 0.068
Identities = 51/61 (83%)
Strand = Plus / Plus
Query: 334 gcacgtacccgcgcgccatgcggaacttgccgctgccgccgacgatgctcatctcgcgga 393
||||||||||| ||||| |||||| ||||| |||||||||||| | ||||||||||
Sbjct: 465 gcacgtacccggtggccatccggaacgtgccggtgccgccgacgacggggatctcgcgga 524
Query: 394 c 394
|
Sbjct: 525 c 525
>gb|CW108803.1|CW108803 104_480_11097718_148_34498_085 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11097718, DNA
sequence
Length = 332
Score = 42.1 bits (21), Expect = 0.068
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 643 gcaccgccgtcgggttcgtccccgccacgacgtcgtg 679
|||||||||||||||| |||| ||||||| ||||||
Sbjct: 91 gcaccgccgtcgggttgctcccggccacgatgtcgtg 55
>gb|CW163523.1|CW163523 104_571_11151506_148_36455_011 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11151506, DNA
sequence
Length = 741
Score = 42.1 bits (21), Expect = 0.068
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 338 gtacccgcgcgccatgcggaacttgccgctgccgccgacgatgct 382
|||||||||||| | |||| |||||| ||||||||||||||||
Sbjct: 384 gtacccgcgcgcgaaccggagcttgcccgtgccgccgacgatgct 428
>gb|CW188528.1|CW188528 104_608_11173082_148_36735_009 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11173082, DNA
sequence
Length = 646
Score = 42.1 bits (21), Expect = 0.068
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 429 agcgtgctgccgttgtgctcgccggccgtgaacacgaagttcatg 473
|||||||||||||||| || || ||||||||||| | |||||||
Sbjct: 467 agcgtgctgccgttgtagtcccccgccgtgaacaccaggttcatg 511
>gb|CW199128.1|CW199128 104_624_11183347_148_36850_078 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11183347, DNA
sequence
Length = 695
Score = 42.1 bits (21), Expect = 0.068
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 509 cgtgtaggtgccctgggcgcg 529
|||||||||||||||||||||
Sbjct: 58 cgtgtaggtgccctgggcgcg 78
>gb|CW266219.1|CW266219 104_735_11232307_148_35265_066 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11232307, DNA
sequence
Length = 703
Score = 42.1 bits (21), Expect = 0.068
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 429 agcgtgctgccgttgtgctcgccggccgtgaacacgaagttcatg 473
|||||||||||||||| || || ||||||||||| | |||||||
Sbjct: 539 agcgtgctgccgttgtagtcccccgccgtgaacaccaggttcatg 583
>gb|CW397743.1|CW397743 fsbb001f086o04f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f086o04, DNA
sequence
Length = 697
Score = 42.1 bits (21), Expect = 0.068
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 338 gtacccgcgcgccatgcggaacttgccgctgccgccgacgatgct 382
|||||||||||| | |||| |||||| ||||||||||||||||
Sbjct: 623 gtacccgcgcgcgaaccggagcttgcccgtgccgccgacgatgct 579
>gb|CW397744.1|CW397744 fsbb001f086o04k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f086o04, DNA
sequence
Length = 701
Score = 42.1 bits (21), Expect = 0.068
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 338 gtacccgcgcgccatgcggaacttgccgctgccgccgacgatgct 382
|||||||||||| | |||| |||||| ||||||||||||||||
Sbjct: 460 gtacccgcgcgcgaaccggagcttgcccgtgccgccgacgatgct 504
>gb|CW459923.1|CW459923 fsbb001f206o12k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f206o12, DNA
sequence
Length = 518
Score = 42.1 bits (21), Expect = 0.068
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 338 gtacccgcgcgccatgcggaacttgccgctgccgccgacgatgct 382
|||||||||||| | |||| |||||| ||||||||||||||||
Sbjct: 224 gtacccgcgcgcgaaccggagcttgcccgtgccgccgacgatgct 268
>gb|CW498314.1|CW498314 fsbb001f291h23f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f291h23, DNA
sequence
Length = 264
Score = 42.1 bits (21), Expect = 0.068
Identities = 51/61 (83%)
Strand = Plus / Plus
Query: 334 gcacgtacccgcgcgccatgcggaacttgccgctgccgccgacgatgctcatctcgcgga 393
||||||||||| ||||| |||||| ||||| |||||||||||| | ||||||||||
Sbjct: 107 gcacgtacccggtggccatccggaacgtgccggtgccgccgacgacggggatctcgcgga 166
Query: 394 c 394
|
Sbjct: 167 c 167
>gb|AW745074.1|AW745074 LG1_386_D11.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 661
Score = 42.1 bits (21), Expect = 0.068
Identities = 51/61 (83%)
Strand = Plus / Minus
Query: 334 gcacgtacccgcgcgccatgcggaacttgccgctgccgccgacgatgctcatctcgcgga 393
||||||||||| ||||| |||||| ||||| |||||||||||| | ||||||||||
Sbjct: 561 gcacgtacccggtggccatccggaacgtgccggtgccgccgacgacggggatctcgcgga 502
Query: 394 c 394
|
Sbjct: 501 c 501
>gb|AW745152.1|AW745152 LG1_386_D11.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 604
Score = 42.1 bits (21), Expect = 0.068
Identities = 51/61 (83%)
Strand = Plus / Minus
Query: 334 gcacgtacccgcgcgccatgcggaacttgccgctgccgccgacgatgctcatctcgcgga 393
||||||||||| ||||| |||||| ||||| |||||||||||| | ||||||||||
Sbjct: 124 gcacgtacccggtggccatccggaacgtgccggtgccgccgacgacggggatctcgcgga 65
Query: 394 c 394
|
Sbjct: 64 c 64
>gb|BE357190.1|BE357190 DG1_147_D01.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 629
Score = 42.1 bits (21), Expect = 0.068
Identities = 51/61 (83%)
Strand = Plus / Minus
Query: 334 gcacgtacccgcgcgccatgcggaacttgccgctgccgccgacgatgctcatctcgcgga 393
||||||||||| ||||| |||||| ||||| |||||||||||| | ||||||||||
Sbjct: 190 gcacgtacccggtggccatccggaacgtgccggtgccgccgacgacggggatctcgcgga 131
Query: 394 c 394
|
Sbjct: 130 c 130
>gb|BG559979.1|BG559979 RHIZ2_68_A05.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 445
Score = 42.1 bits (21), Expect = 0.068
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 643 gcaccgccgtcgggttcgtccccgccacgacgtcgtg 679
|||||||||||||||| |||| ||||||| ||||||
Sbjct: 201 gcaccgccgtcgggttgctcccggccacgatgtcgtg 165
>gb|BG560069.1|BG560069 RHIZ2_69_A05.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 430
Score = 42.1 bits (21), Expect = 0.068
Identities = 51/61 (83%)
Strand = Plus / Minus
Query: 334 gcacgtacccgcgcgccatgcggaacttgccgctgccgccgacgatgctcatctcgcgga 393
||||||||||| ||||| |||||| ||||| |||||||||||| | ||||||||||
Sbjct: 118 gcacgtacccggtggccatccggaacgtgccggtgccgccgacgacggggatctcgcgga 59
Query: 394 c 394
|
Sbjct: 58 c 58
>gb|CD427750.1|CD427750 ETH1_34_A08.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_34_A08_A002 3', mRNA sequence
Length = 687
Score = 42.1 bits (21), Expect = 0.068
Identities = 51/61 (83%)
Strand = Plus / Minus
Query: 334 gcacgtacccgcgcgccatgcggaacttgccgctgccgccgacgatgctcatctcgcgga 393
||||||||||| ||||| |||||| ||||| |||||||||||| | ||||||||||
Sbjct: 216 gcacgtacccggtggccatccggaacgtgccggtgccgccgacgacggggatctcgcgga 157
Query: 394 c 394
|
Sbjct: 156 c 156
>gb|CX611552.1|CX611552 ANR1_25_G07.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_25_G07_A002 3', mRNA sequence
Length = 567
Score = 42.1 bits (21), Expect = 0.068
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 338 gtacccgcgcgccatgcggaacttgccgctgccgccgacgatgct 382
|||||||||||| | ||||||||||| ||||||||| ||||||
Sbjct: 292 gtacccgcgcgcgaaccggaacttgcccgtgccgccgaagatgct 248
>gb|CX611638.1|CX611638 ANR1_25_G07.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_25_G07_A002 5', mRNA sequence
Length = 771
Score = 42.1 bits (21), Expect = 0.068
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 338 gtacccgcgcgccatgcggaacttgccgctgccgccgacgatgct 382
|||||||||||| | |||| |||||| ||||||||||||||||
Sbjct: 494 gtacccgcgcgcgaaccggagcttgcccgtgccgccgacgatgct 450
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 210,742
Number of Sequences: 832831
Number of extensions: 210742
Number of successful extensions: 61043
Number of sequences better than 0.5: 38
Number of HSP's better than 0.5 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 60927
Number of HSP's gapped (non-prelim): 104
length of query: 707
length of database: 491,359,669
effective HSP length: 20
effective length of query: 687
effective length of database: 474,703,049
effective search space: 326120994663
effective search space used: 326120994663
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)