BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3478999.2.1
(825 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BE362349.1|BE362349 DG1_86_B10.b1_A002 Dark Grown 1 (DG1... 438 e-121
gb|BF586678.1|BF586678 FM1_30_E02.b1_A003 Floral-Induced Me... 438 e-121
gb|CF486080.1|CF486080 POL1_35_C09.g1_A002 Pollen Sorghum b... 438 e-121
gb|CX606790.1|CX606790 ANR1_5_B01.b1_A002 Anaerobic roots S... 438 e-121
gb|CX606881.1|CX606881 ANR1_5_B01.g1_A002 Anaerobic roots S... 438 e-121
gb|DN551869.1|DN551869 pSPR-RT-MR-H1_F12_C273 pSPR Sorghum ... 438 e-121
gb|CD428630.1|CD428630 ETH1_27_E11.g1_A002 Ethylene-treated... 416 e-114
gb|BE362469.1|BE362469 DG1_86_B10.g1_A002 Dark Grown 1 (DG1... 398 e-109
gb|BG559333.1|BG559333 RHIZ2_53_E07.b1_A003 Rhizome2 (RHIZ2... 396 e-108
gb|CD428516.1|CD428516 ETH1_27_E11.b1_A002 Ethylene-treated... 392 e-107
gb|BF586799.1|BF586799 FM1_30_E02.g1_A003 Floral-Induced Me... 367 1e-099
gb|BG241710.1|BG241710 RHIZ2_49_H05.b1_A003 Rhizome2 (RHIZ2... 357 1e-096
gb|BG465545.1|BG465545 RHIZ2_45_H03.b1_A003 Rhizome2 (RHIZ2... 357 1e-096
gb|BG559341.1|BG559341 RHIZ2_53_F03.b1_A003 Rhizome2 (RHIZ2... 357 1e-096
gb|BG241484.1|BG241484 RHIZ2_49_H05.g1_A003 Rhizome2 (RHIZ2... 315 4e-084
gb|BG559016.1|BG559016 RHIZ2_53_E07.g1_A003 Rhizome2 (RHIZ2... 303 1e-080
gb|AW923932.1|AW923932 WS1_31_G12.b1_A002 Water-stressed 1 ... 276 3e-072
gb|CD430066.1|CD430066 ETH1_13_H06.g1_A002 Ethylene-treated... 276 3e-072
gb|CN139896.1|CN139896 OX1_24_G04.g1_A002 Oxidatively-stres... 276 3e-072
gb|CD427769.1|CD427769 ETH1_34_G01.b1_A002 Ethylene-treated... 274 1e-071
gb|AW745521.1|AW745521 WS1_35_A05.b1_A002 Water-stressed 1 ... 270 2e-070
gb|BG463946.1|BG463946 EM1_52_G07.b1_A002 Embryo 1 (EM1) So... 270 2e-070
gb|BG559265.1|BG559265 RHIZ2_52_F09.b1_A003 Rhizome2 (RHIZ2... 270 2e-070
gb|CD211812.1|CD211812 HS1_64_D06.g1_A012 Heat-shocked seed... 270 2e-070
gb|CF761219.1|CF761219 DSAF1_72_E10.b1_A011 Drought-stresse... 250 2e-064
gb|CF770011.1|CF770011 DSBF1_5_D10.b1_A010 Drought-stressed... 250 2e-064
gb|CF770095.1|CF770095 DSBF1_5_D10.g1_A010 Drought-stressed... 250 2e-064
gb|BG158055.1|BG158055 EM1_7_H04.b1_A002 Embryo 1 (EM1) Sor... 248 7e-064
gb|BG559023.1|BG559023 RHIZ2_53_F03.g1_A003 Rhizome2 (RHIZ2... 248 7e-064
gb|CD222706.1|CD222706 CCC1_23_D07.g1_A007 Callus culture/c... 238 7e-061
gb|AW745172.1|AW745172 LG1_386_G05.g1_A002 Light Grown 1 (L... 230 2e-058
gb|AW286703.2|AW286703 LG1_204_C06.b1_A002 Light Grown 1 (L... 228 6e-058
gb|BG465889.1|BG465889 RHIZ2_45_H03.g1_A003 Rhizome2 (RHIZ2... 226 3e-057
gb|CN139818.1|CN139818 OX1_24_G04.b1_A002 Oxidatively-stres... 220 2e-055
gb|BE365066.1|BE365066 PI1_24_D07.b1_A002 Pathogen induced ... 202 4e-050
gb|BE365067.1|BE365067 PI1_24_D06.b1_A002 Pathogen induced ... 202 4e-050
gb|BE365076.1|BE365076 PI1_24_F07.b1_A002 Pathogen induced ... 202 4e-050
gb|BE365077.1|BE365077 PI1_24_F06.b1_A002 Pathogen induced ... 202 4e-050
gb|BE365080.1|BE365080 PI1_24_E07.b1_A002 Pathogen induced ... 202 4e-050
gb|BE365081.1|BE365081 PI1_24_E06.b1_A002 Pathogen induced ... 202 4e-050
gb|BE365095.1|BE365095 PI1_24_C06.b1_A002 Pathogen induced ... 202 4e-050
gb|AW679757.1|AW679757 WS1_31_G12.g1_A002 Water-stressed 1 ... 198 6e-049
gb|BG464027.1|BG464027 EM1_52_G07.g1_A002 Embryo 1 (EM1) So... 198 6e-049
gb|CD222465.1|CD222465 CCC1_22_E06.b1_A007 Callus culture/c... 198 6e-049
gb|CD427858.1|CD427858 ETH1_34_G01.g1_A002 Ethylene-treated... 182 3e-044
gb|CW301925.1|CW301925 104_785_11464455_116_36265_050 Sorgh... 170 1e-040
gb|BE352961.1|BE352961 DG1_1_D02.g1_A002 Dark Grown 1 (DG1)... 165 8e-039
gb|BG558946.1|BG558946 RHIZ2_52_F09.g1_A003 Rhizome2 (RHIZ2... 159 5e-037
gb|CW301926.1|CW301926 104_785_11464455_148_36266_050 Sorgh... 157 2e-036
gb|BE593616.1|BE593616 WS1_98_H01.b1_A002 Water-stressed 1 ... 151 1e-034
gb|BE365068.1|BE365068 PI1_24_D05.b1_A002 Pathogen induced ... 141 1e-031
gb|CW428058.1|CW428058 fsbb001f140f23f0 Sorghum methylation... 115 7e-024
gb|CF771911.1|CF771911 DSBF1_26_A02.g9_A010 Drought-stresse... 96 6e-018
gb|CD211715.1|CD211715 HS1_64_D06.b1_A012 Heat-shocked seed... 86 6e-015
gb|CW069103.1|CW069103 104_318_10525635_1_30095 Sorghum met... 84 2e-014
gb|CD221983.1|CD221983 CCC1_1_A01.b1_A007 Callus culture/ce... 68 1e-009
gb|BG049696.1|BG049696 EM1_7_H04.g1_A002 Embryo 1 (EM1) Sor... 64 2e-008
gb|CD222046.1|CD222046 CCC1_1_A01.g1_A007 Callus culture/ce... 64 2e-008
gb|CL161847.1|CL161847 104_353_10806005_116_31829_293 Sorgh... 62 9e-008
gb|CW042927.1|CW042927 104_277_10507398_114_30253 Sorghum m... 62 9e-008
gb|CW458302.1|CW458302 fsbb001f204i08f0 Sorghum methylation... 62 9e-008
gb|CW458303.1|CW458303 fsbb001f204i08k0 Sorghum methylation... 62 9e-008
gb|CW475998.1|CW475998 fsbb001f232k08f0 Sorghum methylation... 52 8e-005
gb|CW475999.1|CW475999 fsbb001f232k08k0 Sorghum methylation... 52 8e-005
gb|CW105794.1|CW105794 104_475_11013068_116_34457_078 Sorgh... 48 0.001
gb|CW128181.1|CW128181 104_509_11113866_116_34747_069 Sorgh... 42 0.080
gb|CW165789.1|CW165789 104_574_11152698_148_36477_075 Sorgh... 40 0.32
>gb|BE362349.1|BE362349 DG1_86_B10.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 605
Score = 438 bits (221), Expect = e-121
Identities = 392/449 (87%)
Strand = Plus / Plus
Query: 55 atggccaacagcaacctcccgcgccgaatcatcaaggagacgcagcggctcctcagcgaa 114
||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||
Sbjct: 69 atggccaacagcaacctcccgcggcggatcatcaaggagacgcagcggctgctcagcgag 128
Query: 115 ccagcgccggggattagcgcgtcgccgtcggaagagaacatgcggtacttcaatgtcatg 174
||||| |||||||| ||||||||||| ||||| ||||||||||| |||||||| || |||
Sbjct: 129 ccagcaccggggatcagcgcgtcgccctcggaggagaacatgcgctacttcaacgttatg 188
Query: 175 atccttggccccgcacagtcaccctatgaaggtggagttttcaagcttgagctattcttg 234
|||||||| || || ||||| ||||||||||| |||||||| |||||||| || || ||
Sbjct: 189 atccttgggccggcgcagtcgccctatgaagggggagtttttaagcttgaactcttttta 248
Query: 235 cctgaggaatatccaatggctgccccgaaagttaggtttctcaccaaaatttaccatccg 294
|| ||||||||||||||||||||||| || ||||||||||| ||||| ||||| |||||
Sbjct: 249 cccgaggaatatccaatggctgccccaaaggttaggtttctgaccaagatttatcatccc 308
Query: 295 aacattgacaagcttggtaggatatgcctcgacattcttaaggacaaatggagtcccgct 354
|||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||
Sbjct: 309 aacattgacaagcttggtaggatatgcctcgacattctcaaggacaaatggagcccggca 368
Query: 355 cttcagatacgtacagttctgctcagcattcaggcacttctgagtgccccaaatccagat 414
|||||||| || || ||||| | || || ||||| || |||||||| ||||||||||||
Sbjct: 369 cttcagattcgcacggttcttttgagtatacaggctctcctgagtgcgccaaatccagat 428
Query: 415 gatcctctctcagacaacattgcgaaacactggaaatcaaatgaagctgaagcttttgag 474
|| ||||| || || |||||||| || ||||||||| | ||||| | |||||| ||||
Sbjct: 429 gaccctctttccgataacattgcaaagcactggaaagccaatgaggtagaagctgttgaa 488
Query: 475 acagcgaaggagtggactcgcctgtatgc 503
||||| |||||||||||||||||||||||
Sbjct: 489 acagccaaggagtggactcgcctgtatgc 517
>gb|BF586678.1|BF586678 FM1_30_E02.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 571
Score = 438 bits (221), Expect = e-121
Identities = 392/449 (87%)
Strand = Plus / Plus
Query: 55 atggccaacagcaacctcccgcgccgaatcatcaaggagacgcagcggctcctcagcgaa 114
||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||
Sbjct: 36 atggccaacagcaacctcccgcggcggatcatcaaggagacgcagcggctgctcagcgag 95
Query: 115 ccagcgccggggattagcgcgtcgccgtcggaagagaacatgcggtacttcaatgtcatg 174
||||| |||||||| ||||||||||| ||||| ||||||||||| |||||||| || |||
Sbjct: 96 ccagcaccggggatcagcgcgtcgccctcggaggagaacatgcgctacttcaacgttatg 155
Query: 175 atccttggccccgcacagtcaccctatgaaggtggagttttcaagcttgagctattcttg 234
|||||||| || || ||||| ||||||||||| |||||||| |||||||| || || ||
Sbjct: 156 atccttgggccggcgcagtcgccctatgaagggggagtttttaagcttgaactcttttta 215
Query: 235 cctgaggaatatccaatggctgccccgaaagttaggtttctcaccaaaatttaccatccg 294
|| ||||||||||||||||||||||| || ||||||||||| ||||| ||||| |||||
Sbjct: 216 cccgaggaatatccaatggctgccccaaaggttaggtttctgaccaagatttatcatccc 275
Query: 295 aacattgacaagcttggtaggatatgcctcgacattcttaaggacaaatggagtcccgct 354
|||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||
Sbjct: 276 aacattgacaagcttggtaggatatgcctcgacattctcaaggacaaatggagcccggca 335
Query: 355 cttcagatacgtacagttctgctcagcattcaggcacttctgagtgccccaaatccagat 414
|||||||| || || ||||| | || || ||||| || |||||||| ||||||||||||
Sbjct: 336 cttcagattcgaacggttcttttgagtatacaggctctcctgagtgcgccaaatccagat 395
Query: 415 gatcctctctcagacaacattgcgaaacactggaaatcaaatgaagctgaagcttttgag 474
|| ||||| || || |||||||| || ||||||||| | ||||| | |||||| ||||
Sbjct: 396 gaccctctttccgataacattgcaaagcactggaaagccaatgaggtagaagctgttgaa 455
Query: 475 acagcgaaggagtggactcgcctgtatgc 503
||||| |||||||||||||||||||||||
Sbjct: 456 acagccaaggagtggactcgcctgtatgc 484
>gb|CF486080.1|CF486080 POL1_35_C09.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_35_C09_A002 5', mRNA sequence
Length = 609
Score = 438 bits (221), Expect = e-121
Identities = 392/449 (87%)
Strand = Plus / Plus
Query: 55 atggccaacagcaacctcccgcgccgaatcatcaaggagacgcagcggctcctcagcgaa 114
||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||
Sbjct: 107 atggccaacagcaacctcccgcggcggatcatcaaggagacgcagcggctgctcagcgag 166
Query: 115 ccagcgccggggattagcgcgtcgccgtcggaagagaacatgcggtacttcaatgtcatg 174
||||| |||||||| ||||||||||| ||||| ||||||||||| |||||||| || |||
Sbjct: 167 ccagcaccggggatcagcgcgtcgccctcggaggagaacatgcgctacttcaacgttatg 226
Query: 175 atccttggccccgcacagtcaccctatgaaggtggagttttcaagcttgagctattcttg 234
|||||||| || || ||||| ||||||||||| |||||||| |||||||| || || ||
Sbjct: 227 atccttgggccggcgcagtcgccctatgaagggggagtttttaagcttgaactcttttta 286
Query: 235 cctgaggaatatccaatggctgccccgaaagttaggtttctcaccaaaatttaccatccg 294
|| ||||||||||||||||||||||| || ||||||||||| ||||| ||||| |||||
Sbjct: 287 cccgaggaatatccaatggctgccccaaaggttaggtttctgaccaagatttatcatccc 346
Query: 295 aacattgacaagcttggtaggatatgcctcgacattcttaaggacaaatggagtcccgct 354
|||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||
Sbjct: 347 aacattgacaagcttggtaggatatgcctcgacattctcaaggacaaatggagcccggca 406
Query: 355 cttcagatacgtacagttctgctcagcattcaggcacttctgagtgccccaaatccagat 414
|||||||| || || ||||| | || || ||||| || |||||||| ||||||||||||
Sbjct: 407 cttcagattcgcacggttcttttgagtatacaggctctcctgagtgcgccaaatccagat 466
Query: 415 gatcctctctcagacaacattgcgaaacactggaaatcaaatgaagctgaagcttttgag 474
|| ||||| || || |||||||| || ||||||||| | ||||| | |||||| ||||
Sbjct: 467 gaccctctttccgataacattgcaaagcactggaaagccaatgaggtagaagctgttgaa 526
Query: 475 acagcgaaggagtggactcgcctgtatgc 503
||||| |||||||||||||||||||||||
Sbjct: 527 acagccaaggagtggactcgcctgtatgc 555
>gb|CX606790.1|CX606790 ANR1_5_B01.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_5_B01_A002 3', mRNA sequence
Length = 757
Score = 438 bits (221), Expect = e-121
Identities = 392/449 (87%)
Strand = Plus / Plus
Query: 55 atggccaacagcaacctcccgcgccgaatcatcaaggagacgcagcggctcctcagcgaa 114
||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||
Sbjct: 63 atggccaacagcaacctcccgcggcggatcatcaaggagacgcagcggctgctcagcgag 122
Query: 115 ccagcgccggggattagcgcgtcgccgtcggaagagaacatgcggtacttcaatgtcatg 174
||||| |||||||| ||||||||||| ||||| ||||||||||| |||||||| || |||
Sbjct: 123 ccagcaccggggatcagcgcgtcgccctcggaggagaacatgcgctacttcaacgttatg 182
Query: 175 atccttggccccgcacagtcaccctatgaaggtggagttttcaagcttgagctattcttg 234
|||||||| || || ||||| ||||||||||| |||||||| |||||||| || || ||
Sbjct: 183 atccttgggccggcgcagtcgccctatgaagggggagtttttaagcttgaactcttttta 242
Query: 235 cctgaggaatatccaatggctgccccgaaagttaggtttctcaccaaaatttaccatccg 294
|| ||||||||||||||||||||||| || ||||||||||| ||||| ||||| |||||
Sbjct: 243 cccgaggaatatccaatggctgccccaaaggttaggtttctgaccaagatttatcatccc 302
Query: 295 aacattgacaagcttggtaggatatgcctcgacattcttaaggacaaatggagtcccgct 354
|||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||
Sbjct: 303 aacattgacaagcttggtaggatatgcctcgacattctcaaggacaaatggagcccggca 362
Query: 355 cttcagatacgtacagttctgctcagcattcaggcacttctgagtgccccaaatccagat 414
|||||||| || || ||||| | || || ||||| || |||||||| ||||||||||||
Sbjct: 363 cttcagattcgcacggttcttttgagtatacaggctctcctgagtgcgccaaatccagat 422
Query: 415 gatcctctctcagacaacattgcgaaacactggaaatcaaatgaagctgaagcttttgag 474
|| ||||| || || |||||||| || ||||||||| | ||||| | |||||| ||||
Sbjct: 423 gaccctctttccgataacattgcaaagcactggaaagccaatgaggtagaagctgttgaa 482
Query: 475 acagcgaaggagtggactcgcctgtatgc 503
||||| |||||||||||||||||||||||
Sbjct: 483 acagccaaggagtggactcgcctgtatgc 511
>gb|CX606881.1|CX606881 ANR1_5_B01.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_5_B01_A002 5', mRNA sequence
Length = 819
Score = 438 bits (221), Expect = e-121
Identities = 392/449 (87%)
Strand = Plus / Plus
Query: 55 atggccaacagcaacctcccgcgccgaatcatcaaggagacgcagcggctcctcagcgaa 114
||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||
Sbjct: 158 atggccaacagcaacctcccgcggcggatcatcaaggagacgcagcggctgctcagcgag 217
Query: 115 ccagcgccggggattagcgcgtcgccgtcggaagagaacatgcggtacttcaatgtcatg 174
||||| |||||||| ||||||||||| ||||| ||||||||||| |||||||| || |||
Sbjct: 218 ccagcaccggggatcagcgcgtcgccctcggaggagaacatgcgctacttcaacgttatg 277
Query: 175 atccttggccccgcacagtcaccctatgaaggtggagttttcaagcttgagctattcttg 234
|||||||| || || ||||| ||||||||||| |||||||| |||||||| || || ||
Sbjct: 278 atccttgggccggcgcagtcgccctatgaagggggagtttttaagcttgaactcttttta 337
Query: 235 cctgaggaatatccaatggctgccccgaaagttaggtttctcaccaaaatttaccatccg 294
|| ||||||||||||||||||||||| || ||||||||||| ||||| ||||| |||||
Sbjct: 338 cccgaggaatatccaatggctgccccaaaggttaggtttctgaccaagatttatcatccc 397
Query: 295 aacattgacaagcttggtaggatatgcctcgacattcttaaggacaaatggagtcccgct 354
|||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||
Sbjct: 398 aacattgacaagcttggtaggatatgcctcgacattctcaaggacaaatggagcccggca 457
Query: 355 cttcagatacgtacagttctgctcagcattcaggcacttctgagtgccccaaatccagat 414
|||||||| || || ||||| | || || ||||| || |||||||| ||||||||||||
Sbjct: 458 cttcagattcgcacggttcttttgagtatacaggctctcctgagtgcgccaaatccagat 517
Query: 415 gatcctctctcagacaacattgcgaaacactggaaatcaaatgaagctgaagcttttgag 474
|| ||||| || || |||||||| || ||||||||| | ||||| | |||||| ||||
Sbjct: 518 gaccctctttccgataacattgcaaagcactggaaagccaatgaggtagaagctgttgaa 577
Query: 475 acagcgaaggagtggactcgcctgtatgc 503
||||| |||||||||||||||||||||||
Sbjct: 578 acagccaaggagtggactcgcctgtatgc 606
>gb|DN551869.1|DN551869 pSPR-RT-MR-H1_F12_C273 pSPR Sorghum propinquum cDNA, mRNA sequence
Length = 779
Score = 438 bits (221), Expect = e-121
Identities = 392/449 (87%)
Strand = Plus / Minus
Query: 55 atggccaacagcaacctcccgcgccgaatcatcaaggagacgcagcggctcctcagcgaa 114
||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||
Sbjct: 686 atggccaacagcaacctcccgcggcggatcatcaaggagacgcagcggctgctcagcgag 627
Query: 115 ccagcgccggggattagcgcgtcgccgtcggaagagaacatgcggtacttcaatgtcatg 174
||||| |||||||| ||||||||||| ||||| ||||||||||| |||||||| || |||
Sbjct: 626 ccagcaccggggatcagcgcgtcgccctcggaggagaacatgcgctacttcaacgttatg 567
Query: 175 atccttggccccgcacagtcaccctatgaaggtggagttttcaagcttgagctattcttg 234
|||||||| || || ||||| ||||||||||| |||||||| |||||||| || || ||
Sbjct: 566 atccttgggccggcgcagtcgccctatgaagggggagtttttaagcttgaactcttttta 507
Query: 235 cctgaggaatatccaatggctgccccgaaagttaggtttctcaccaaaatttaccatccg 294
|| ||||||||||||||||||||||| || ||||||||||| ||||| ||||| |||||
Sbjct: 506 cccgaggaatatccaatggctgccccaaaggttaggtttctgaccaagatttatcatccc 447
Query: 295 aacattgacaagcttggtaggatatgcctcgacattcttaaggacaaatggagtcccgct 354
|||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||
Sbjct: 446 aacattgacaagcttggtaggatatgcctcgacattctcaaggacaaatggagcccggca 387
Query: 355 cttcagatacgtacagttctgctcagcattcaggcacttctgagtgccccaaatccagat 414
|||||||| || || ||||| | || || ||||| || |||||||| ||||||||||||
Sbjct: 386 cttcagattcgaacggttcttttgagtatacaggctctcctgagtgcgccaaatccagat 327
Query: 415 gatcctctctcagacaacattgcgaaacactggaaatcaaatgaagctgaagcttttgag 474
|| ||||| || || |||||||| || ||||||||| | ||||| | |||||| ||||
Sbjct: 326 gaccctctttccgataacattgcaaagcactggaaagccaatgaggtagaagctgttgaa 267
Query: 475 acagcgaaggagtggactcgcctgtatgc 503
||||| |||||||||||||||||||||||
Sbjct: 266 acagccaaggagtggactcgcctgtatgc 238
>gb|CD428630.1|CD428630 ETH1_27_E11.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_27_E11_A002 5', mRNA sequence
Length = 703
Score = 416 bits (210), Expect = e-114
Identities = 391/450 (86%), Gaps = 1/450 (0%)
Strand = Plus / Plus
Query: 55 atggccaacagcaacctcccgcgccgaatcatcaaggagacgcagcggctcctcagcgaa 114
||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||
Sbjct: 172 atggccaacagcaacctcccgcggcggatcatcaaggagacgcagcggctgctcagcgag 231
Query: 115 ccagcgccggggattagcgcgtcgccgtcggaagagaacatgcggtacttcaatgtcatg 174
||||| |||||||| ||||||||||| ||||| ||||||||||| |||||||| || |||
Sbjct: 232 ccagcaccggggatcagcgcgtcgccctcggaggagaacatgcgctacttcaacgttatg 291
Query: 175 atccttggccccgcacagtcaccctatgaaggtggagttttcaagcttgagctattcttg 234
|||||||| || || ||||| |||||| |||| |||||||| |||||||| || || ||
Sbjct: 292 atccttgggccggcgcagtcgccctataaagggggagtttttaagcttgaactcttttta 351
Query: 235 cctgaggaatatccaatgg-ctgccccgaaagttaggtttctcaccaaaatttaccatcc 293
|| |||||||||||||||| ||||||| || ||||||||||| ||||| ||||| |||||
Sbjct: 352 cccgaggaatatccaatgggctgccccaaaggttaggtttctgaccaagatttatcatcc 411
Query: 294 gaacattgacaagcttggtaggatatgcctcgacattcttaaggacaaatggagtcccgc 353
|||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||
Sbjct: 412 caacattgacaagcttggtaggatatgcctcgacattctcaaggacaaatggagcccggc 471
Query: 354 tcttcagatacgtacagttctgctcagcattcaggcacttctgagtgccccaaatccaga 413
|||||||| || || ||||| | || || ||||| || |||||||| |||||||||||
Sbjct: 472 acttcagattcgcacggttcttttgagtatacaggctctcctgagtgcgccaaatccaga 531
Query: 414 tgatcctctctcagacaacattgcgaaacactggaaatcaaatgaagctgaagcttttga 473
||| ||||| || || |||||||| || ||||||||| | ||||| | |||||| ||||
Sbjct: 532 tgaccctctttccgataacattgcaaagcactggaaagccaatgaggtagaagctgttga 591
Query: 474 gacagcgaaggagtggactcgcctgtatgc 503
||||| |||||||||||||||||||||||
Sbjct: 592 aacagccaaggagtggactcgcctgtatgc 621
>gb|BE362469.1|BE362469 DG1_86_B10.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 500
Score = 398 bits (201), Expect = e-109
Identities = 366/421 (86%)
Strand = Plus / Plus
Query: 83 tcatcaaggagacgcagcggctcctcagcgaaccagcgccggggattagcgcgtcgccgt 142
|||||||||||||||||||||| |||||||| ||||| |||||||| ||||||||||| |
Sbjct: 1 tcatcaaggagacgcagcggctgctcagcgagccagcaccggggatcagcgcgtcgccct 60
Query: 143 cggaagagaacatgcggtacttcaatgtcatgatccttggccccgcacagtcaccctatg 202
|||| ||||||||||| |||||||| || ||||||||||| || || ||||| |||||||
Sbjct: 61 cggaggagaacatgcgctacttcaacgttatgatccttgggccggcgcagtcgccctatg 120
Query: 203 aaggtggagttttcaagcttgagctattcttgcctgaggaatatccaatggctgccccga 262
|||| |||||||| |||||||| || || || || ||||||||||||||||||||||| |
Sbjct: 121 aagggggagtttttaagcttgaactctttttacccgaggaatatccaatggctgccccaa 180
Query: 263 aagttaggtttctcaccaaaatttaccatccgaacattgacaagcttggtaggatatgcc 322
| ||||||||||| ||||| ||||| ||||| ||||||||||||||||||||||||||||
Sbjct: 181 aggttaggtttctgaccaagatttatcatcccaacattgacaagcttggtaggatatgcc 240
Query: 323 tcgacattcttaaggacaaatggagtcccgctcttcagatacgtacagttctgctcagca 382
|||||||||| |||||||||||||| || || |||||||| || || ||||| | || |
Sbjct: 241 tcgacattctcaaggacaaatggagcccggcacttcagattcgcacggttcttttgagta 300
Query: 383 ttcaggcacttctgagtgccccaaatccagatgatcctctctcagacaacattgcgaaac 442
| ||||| || |||||||| |||||||||||||| ||||| || || |||||||| || |
Sbjct: 301 tacaggctctcctgagtgcgccaaatccagatgaccctctttccgataacattgcaaagc 360
Query: 443 actggaaatcaaatgaagctgaagcttttgagacagcgaaggagtggactcgcctgtatg 502
|||||||| | ||||| | |||||| |||| ||||| ||||||||||||||||||||||
Sbjct: 361 actggaaagccaatgaggtagaagctgttgaaacagccaaggagtggactcgcctgtatg 420
Query: 503 c 503
|
Sbjct: 421 c 421
>gb|BG559333.1|BG559333 RHIZ2_53_E07.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 505
Score = 396 bits (200), Expect = e-108
Identities = 347/396 (87%)
Strand = Plus / Plus
Query: 55 atggccaacagcaacctcccgcgccgaatcatcaaggagacgcagcggctcctcagcgaa 114
||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||
Sbjct: 106 atggccaacagcaacctcccgcggcggatcatcaaggagacgcagcggctgctcagcgag 165
Query: 115 ccagcgccggggattagcgcgtcgccgtcggaagagaacatgcggtacttcaatgtcatg 174
||||| |||||||| ||||||||||| ||||| ||||||||||| |||||||| || |||
Sbjct: 166 ccagcaccggggatcagcgcgtcgccctcggaggagaacatgcgctacttcaacgttatg 225
Query: 175 atccttggccccgcacagtcaccctatgaaggtggagttttcaagcttgagctattcttg 234
|||||||| || || ||||| ||||||||||| |||||||| |||||||| || || ||
Sbjct: 226 atccttgggccggcgcagtcgccctatgaagggggagtttttaagcttgaactcttttta 285
Query: 235 cctgaggaatatccaatggctgccccgaaagttaggtttctcaccaaaatttaccatccg 294
|| ||||||||||||||||||||||| || ||||||||||| ||||| ||||| |||||
Sbjct: 286 cccgaggaatatccaatggctgccccaaaggttaggtttctgaccaagatttatcatccc 345
Query: 295 aacattgacaagcttggtaggatatgcctcgacattcttaaggacaaatggagtcccgct 354
|||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||
Sbjct: 346 aacattgacaagcttggtaggatatgcctcgacattctcaaggacaaatggagcccggca 405
Query: 355 cttcagatacgtacagttctgctcagcattcaggcacttctgagtgccccaaatccagat 414
|||||||| || || ||||| | || || ||||| || |||||||| ||||||||||||
Sbjct: 406 cttcagattcgaacggttcttttgagtatacaggctctcctgagtgcgccaaatccagat 465
Query: 415 gatcctctctcagacaacattgcgaaacactggaaa 450
|| ||||| || || |||||||| || |||||||||
Sbjct: 466 gaccctctttccgataacattgcaaagcactggaaa 501
>gb|CD428516.1|CD428516 ETH1_27_E11.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_27_E11_A002 3', mRNA sequence
Length = 678
Score = 392 bits (198), Expect = e-107
Identities = 366/422 (86%)
Strand = Plus / Plus
Query: 82 atcatcaaggagacgcagcggctcctcagcgaaccagcgccggggattagcgcgtcgccg 141
||||||||||||||||||||||| |||||||| ||||| |||||||| |||||||||||
Sbjct: 1 atcatcaaggagacgcagcggctgctcagcgagccagcaccggggatcagcgcgtcgccc 60
Query: 142 tcggaagagaacatgcggtacttcaatgtcatgatccttggccccgcacagtcaccctat 201
||||| ||||||||||| |||||||| || ||||||||||| || || ||||| ||||||
Sbjct: 61 tcggaggagaacatgcgctacttcaacgttatgatccttgggccggcgcagtcgccctat 120
Query: 202 gaaggtggagttttcaagcttgagctattcttgcctgaggaatatccaatggctgccccg 261
|||| |||||||| |||||||| || || || || |||||||||||||||||||||||
Sbjct: 121 aaagggggagtttttaagcttgaactctttttacccgaggaatatccaatggctgcccca 180
Query: 262 aaagttaggtttctcaccaaaatttaccatccgaacattgacaagcttggtaggatatgc 321
|| ||||||||||| ||||| ||||| ||||| |||||||||||||||||||||||||||
Sbjct: 181 aaggttaggtttctgaccaagatttatcatcccaacattgacaagcttggtaggatatgc 240
Query: 322 ctcgacattcttaaggacaaatggagtcccgctcttcagatacgtacagttctgctcagc 381
||||||||||| |||||||||||||| || || |||||||| || || ||||| | ||
Sbjct: 241 ctcgacattctcaaggacaaatggagcccggcacttcagattcgcacggttcttttgagt 300
Query: 382 attcaggcacttctgagtgccccaaatccagatgatcctctctcagacaacattgcgaaa 441
|| ||||| || |||||||| |||||||||||||| ||||| || || |||||||| ||
Sbjct: 301 atacaggctctcctgagtgcgccaaatccagatgaccctctttccgataacattgcaaag 360
Query: 442 cactggaaatcaaatgaagctgaagcttttgagacagcgaaggagtggactcgcctgtat 501
||||||||| | ||||| | |||||| |||| ||||| |||||||||||||||||||||
Sbjct: 361 cactggaaagccaatgaggtagaagctgttgaaacagccaaggagtggactcgcctgtat 420
Query: 502 gc 503
||
Sbjct: 421 gc 422
>gb|BF586799.1|BF586799 FM1_30_E02.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 619
Score = 367 bits (185), Expect = 1e-099
Identities = 350/405 (86%)
Strand = Plus / Plus
Query: 99 gcggctcctcagcgaaccagcgccggggattagcgcgtcgccgtcggaagagaacatgcg 158
|||||| |||||||| ||||| |||||||| ||||||||||| ||||| |||||||||||
Sbjct: 1 gcggctgctcagcgagccagcaccggggatcagcgcgtcgccctcggaggagaacatgcg 60
Query: 159 gtacttcaatgtcatgatccttggccccgcacagtcaccctatgaaggtggagttttcaa 218
|||||||| || ||||||||||| || || ||||| ||||||||||| |||||||| ||
Sbjct: 61 ctacttcaacgttatgatccttgggccggcgcagtcgccctatgaagggggagtttttaa 120
Query: 219 gcttgagctattcttgcctgaggaatatccaatggctgccccgaaagttaggtttctcac 278
|||||| || || || || ||||||||||||||||||||||| || ||||||||||| ||
Sbjct: 121 gcttgaactctttttacccgaggaatatccaatggctgccccaaaggttaggtttctgac 180
Query: 279 caaaatttaccatccgaacattgacaagcttggtaggatatgcctcgacattcttaagga 338
||| ||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 181 caagatttatcatcccaacattgacaagcttggtaggatatgcctcgacattctcaagga 240
Query: 339 caaatggagtcccgctcttcagatacgtacagttctgctcagcattcaggcacttctgag 398
||||||||| || || |||||||| || || ||||| | || || ||||| || |||||
Sbjct: 241 caaatggagcccggcacttcagattcgaacggttcttttgagtatacaggctctcctgag 300
Query: 399 tgccccaaatccagatgatcctctctcagacaacattgcgaaacactggaaatcaaatga 458
||| |||||||||||||| ||||| || || |||||||| || ||||||||| | |||||
Sbjct: 301 tgcgccaaatccagatgaccctctttccgataacattgcaaagcactggaaagccaatga 360
Query: 459 agctgaagcttttgagacagcgaaggagtggactcgcctgtatgc 503
| |||||| |||| ||||| |||||||||||||||||||||||
Sbjct: 361 ggtagaagctgttgaaacagccaaggagtggactcgcctgtatgc 405
>gb|BG241710.1|BG241710 RHIZ2_49_H05.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 420
Score = 357 bits (180), Expect = 1e-096
Identities = 276/308 (89%)
Strand = Plus / Plus
Query: 55 atggccaacagcaacctcccgcgccgaatcatcaaggagacgcagcggctcctcagcgaa 114
||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||
Sbjct: 106 atggccaacagcaacctcccgcggcggatcatcaaggagacgcagcggctgctcagcgag 165
Query: 115 ccagcgccggggattagcgcgtcgccgtcggaagagaacatgcggtacttcaatgtcatg 174
||||| |||||||| ||||||||||| ||||| ||||||||||| |||||||| || |||
Sbjct: 166 ccagcaccggggatcagcgcgtcgccctcggaggagaacatgcgctacttcaacgttatg 225
Query: 175 atccttggccccgcacagtcaccctatgaaggtggagttttcaagcttgagctattcttg 234
|||||||| || || ||||| ||||||||||| |||||||| |||||||| || || ||
Sbjct: 226 atccttgggccggcgcagtcgccctatgaagggggagtttttaagcttgaactcttttta 285
Query: 235 cctgaggaatatccaatggctgccccgaaagttaggtttctcaccaaaatttaccatccg 294
|| ||||||||||||||||||||||| || ||||||||||| ||||| ||||| |||||
Sbjct: 286 cccgaggaatatccaatggctgccccaaaggttaggtttctgaccaagatttatcatccc 345
Query: 295 aacattgacaagcttggtaggatatgcctcgacattcttaaggacaaatggagtcccgct 354
|||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||
Sbjct: 346 aacattgacaagcttggtaggatatgcctcgacattctcaaggacaaatggagcccggca 405
Query: 355 cttcagat 362
||||||||
Sbjct: 406 cttcagat 413
>gb|BG465545.1|BG465545 RHIZ2_45_H03.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 454
Score = 357 bits (180), Expect = 1e-096
Identities = 276/308 (89%)
Strand = Plus / Plus
Query: 55 atggccaacagcaacctcccgcgccgaatcatcaaggagacgcagcggctcctcagcgaa 114
||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||
Sbjct: 106 atggccaacagcaacctcccgcggcggatcatcaaggagacgcagcggctgctcagcgag 165
Query: 115 ccagcgccggggattagcgcgtcgccgtcggaagagaacatgcggtacttcaatgtcatg 174
||||| |||||||| ||||||||||| ||||| ||||||||||| |||||||| || |||
Sbjct: 166 ccagcaccggggatcagcgcgtcgccctcggaggagaacatgcgctacttcaacgttatg 225
Query: 175 atccttggccccgcacagtcaccctatgaaggtggagttttcaagcttgagctattcttg 234
|||||||| || || ||||| ||||||||||| |||||||| |||||||| || || ||
Sbjct: 226 atccttgggccggcgcagtcgccctatgaagggggagtttttaagcttgaactcttttta 285
Query: 235 cctgaggaatatccaatggctgccccgaaagttaggtttctcaccaaaatttaccatccg 294
|| ||||||||||||||||||||||| || ||||||||||| ||||| ||||| |||||
Sbjct: 286 cccgaggaatatccaatggctgccccaaaggttaggtttctgaccaagatttatcatccc 345
Query: 295 aacattgacaagcttggtaggatatgcctcgacattcttaaggacaaatggagtcccgct 354
|||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||
Sbjct: 346 aacattgacaagcttggtaggatatgcctcgacattctcaaggacaaatggagcccggca 405
Query: 355 cttcagat 362
||||||||
Sbjct: 406 cttcagat 413
>gb|BG559341.1|BG559341 RHIZ2_53_F03.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 448
Score = 357 bits (180), Expect = 1e-096
Identities = 276/308 (89%)
Strand = Plus / Plus
Query: 55 atggccaacagcaacctcccgcgccgaatcatcaaggagacgcagcggctcctcagcgaa 114
||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||
Sbjct: 106 atggccaacagcaacctcccgcggcggatcatcaaggagacgcagcggctgctcagcgag 165
Query: 115 ccagcgccggggattagcgcgtcgccgtcggaagagaacatgcggtacttcaatgtcatg 174
||||| |||||||| ||||||||||| ||||| ||||||||||| |||||||| || |||
Sbjct: 166 ccagcaccggggatcagcgcgtcgccctcggaggagaacatgcgctacttcaacgttatg 225
Query: 175 atccttggccccgcacagtcaccctatgaaggtggagttttcaagcttgagctattcttg 234
|||||||| || || ||||| ||||||||||| |||||||| |||||||| || || ||
Sbjct: 226 atccttgggccggcgcagtcgccctatgaagggggagtttttaagcttgaactcttttta 285
Query: 235 cctgaggaatatccaatggctgccccgaaagttaggtttctcaccaaaatttaccatccg 294
|| ||||||||||||||||||||||| || ||||||||||| ||||| ||||| |||||
Sbjct: 286 cccgaggaatatccaatggctgccccaaaggttaggtttctgaccaagatttatcatccc 345
Query: 295 aacattgacaagcttggtaggatatgcctcgacattcttaaggacaaatggagtcccgct 354
|||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||
Sbjct: 346 aacattgacaagcttggtaggatatgcctcgacattctcaaggacaaatggagcccggca 405
Query: 355 cttcagat 362
||||||||
Sbjct: 406 cttcagat 413
>gb|BG241484.1|BG241484 RHIZ2_49_H05.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 553
Score = 315 bits (159), Expect = 4e-084
Identities = 306/355 (86%)
Strand = Plus / Plus
Query: 149 agaacatgcggtacttcaatgtcatgatccttggccccgcacagtcaccctatgaaggtg 208
|||||||||| |||||||| || ||||||||||| || || ||||| ||||||||||| |
Sbjct: 1 agaacatgcgctacttcaacgttatgatccttgggccggcgcagtcgccctatgaagggg 60
Query: 209 gagttttcaagcttgagctattcttgcctgaggaatatccaatggctgccccgaaagtta 268
||||||| |||||||| || || || || ||||||||||||||||||||||| || ||||
Sbjct: 61 gagtttttaagcttgaactctttttacccgaggaatatccaatggctgccccaaaggtta 120
Query: 269 ggtttctcaccaaaatttaccatccgaacattgacaagcttggtaggatatgcctcgaca 328
||||||| ||||| ||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct: 121 ggtttctgaccaagatttatcatcccaacattgacaagcttggtaggatatgcctcgaca 180
Query: 329 ttcttaaggacaaatggagtcccgctcttcagatacgtacagttctgctcagcattcagg 388
|||| |||||||||||||| || || |||||||| || || ||||| | || || ||||
Sbjct: 181 ttctcaaggacaaatggagcccggcacttcagattcgaacggttcttttgagtatacagg 240
Query: 389 cacttctgagtgccccaaatccagatgatcctctctcagacaacattgcgaaacactgga 448
| || |||||||| |||||||||||||| ||||| || || |||||||| || |||||||
Sbjct: 241 ctctcctgagtgcgccaaatccagatgaccctctttccgataacattgcaaagcactgga 300
Query: 449 aatcaaatgaagctgaagcttttgagacagcgaaggagtggactcgcctgtatgc 503
|| | ||||| | |||||| |||| ||||| |||||||||||||||||||||||
Sbjct: 301 aagccaatgaggtagaagctgttgaaacagccaaggagtggactcgcctgtatgc 355
>gb|BG559016.1|BG559016 RHIZ2_53_E07.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 631
Score = 303 bits (153), Expect = 1e-080
Identities = 300/349 (85%)
Strand = Plus / Plus
Query: 155 tgcggtacttcaatgtcatgatccttggccccgcacagtcaccctatgaaggtggagttt 214
|||| |||||||| || ||||||||||| || || ||||| ||||||||||| |||||||
Sbjct: 1 tgcgctacttcaacgttatgatccttgggccggcgcagtcgccctatgaagggggagttt 60
Query: 215 tcaagcttgagctattcttgcctgaggaatatccaatggctgccccgaaagttaggtttc 274
| |||||||| || || || || ||||||||||||||||||||||| || ||||||||||
Sbjct: 61 ttaagcttgaactctttttacccgaggaatatccaatggctgccccaaaggttaggtttc 120
Query: 275 tcaccaaaatttaccatccgaacattgacaagcttggtaggatatgcctcgacattctta 334
| ||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct: 121 tgaccaagatttatcatcccaacattgacaagcttggtaggatatgcctcgacattctca 180
Query: 335 aggacaaatggagtcccgctcttcagatacgtacagttctgctcagcattcaggcacttc 394
||||||||||||| || || |||||||| || || ||||| | || || ||||| || |
Sbjct: 181 aggacaaatggagcccggcacttcagattcgaacggttcttttgagtatacaggctctcc 240
Query: 395 tgagtgccccaaatccagatgatcctctctcagacaacattgcgaaacactggaaatcaa 454
||||||| |||||||||||||| ||||| || || |||||||| || ||||||||| | |
Sbjct: 241 tgagtgcgccaaatccagatgaccctctttccgataacattgcaaagcactggaaagcca 300
Query: 455 atgaagctgaagcttttgagacagcgaaggagtggactcgcctgtatgc 503
|||| | |||||| |||| ||||| |||||||||||||||||||||||
Sbjct: 301 atgaggtagaagctgttgaaacagccaaggagtggactcgcctgtatgc 349
>gb|AW923932.1|AW923932 WS1_31_G12.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 600
Score = 276 bits (139), Expect = 3e-072
Identities = 364/439 (82%)
Strand = Plus / Plus
Query: 53 ccatggccaacagcaacctcccgcgccgaatcatcaaggagacgcagcggctcctcagcg 112
|||||||||||||||||||||| ||||| ||||||||||||||||||||| | |||||||
Sbjct: 113 ccatggccaacagcaacctcccccgccgcatcatcaaggagacgcagcggttgctcagcg 172
Query: 113 aaccagcgccggggattagcgcgtcgccgtcggaagagaacatgcggtacttcaatgtca 172
| ||||| || || || || || ||||| || || ||||||||||| |||||||||||||
Sbjct: 173 agccagctccaggaatcagtgcctcgccatcagaggagaacatgcgctacttcaatgtca 232
Query: 173 tgatccttggccccgcacagtcaccctatgaaggtggagttttcaagcttgagctattct 232
|||||||||| || | ||||| || || || || |||||||||||||| ||| ||||||
Sbjct: 233 tgatccttggaccatcgcagtcgccatacgagggaggagttttcaagctcgagttattct 292
Query: 233 tgcctgaggaatatccaatggctgccccgaaagttaggtttctcaccaaaatttaccatc 292
||||||| ||||||||||||||| | || || ||| | |||||||| |||||||| || |
Sbjct: 293 tgcctgaagaatatccaatggctccaccaaaggttcgttttctcacaaaaatttatcacc 352
Query: 293 cgaacattgacaagcttggtaggatatgcctcgacattcttaaggacaaatggagtcccg 352
| ||||||||||||||||||||||||||||| || ||| | |||||||| |||||||| |
Sbjct: 353 ctaacattgacaagcttggtaggatatgccttgatattttgaaggacaagtggagtcctg 412
Query: 353 ctcttcagatacgtacagttctgctcagcattcaggcacttctgagtgccccaaatccag 412
| |||||||| || |||||| | | ||||| |||||| | || ||||| ||||| || |
Sbjct: 413 cccttcagattcgaacagttttattgagcatccaggcattgcttagtgctccaaaccctg 472
Query: 413 atgatcctctctcagacaacattgcgaaacactggaaatcaaatgaagctgaagcttttg 472
|||| || || | ||||| | || || |||||||| | ||||||||||||||| | |
Sbjct: 473 atgacccacttgccgacaatgtggcaaagcactggaaggctaatgaagctgaagctgtag 532
Query: 473 agacagcgaaggagtggac 491
| ||||| || ||||||||
Sbjct: 533 aaacagctaaagagtggac 551
>gb|CD430066.1|CD430066 ETH1_13_H06.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_13_H06_A002 5', mRNA sequence
Length = 644
Score = 276 bits (139), Expect = 3e-072
Identities = 364/439 (82%)
Strand = Plus / Plus
Query: 53 ccatggccaacagcaacctcccgcgccgaatcatcaaggagacgcagcggctcctcagcg 112
|||||||||||||||||||||| ||||| ||||||||||||||||||||| | |||||||
Sbjct: 133 ccatggccaacagcaacctcccccgccgcatcatcaaggagacgcagcggttgctcagcg 192
Query: 113 aaccagcgccggggattagcgcgtcgccgtcggaagagaacatgcggtacttcaatgtca 172
| ||||| || || || || || ||||| || || ||||||||||| |||||||||||||
Sbjct: 193 agccagctccaggaatcagtgcctcgccatcagaggagaacatgcgctacttcaatgtca 252
Query: 173 tgatccttggccccgcacagtcaccctatgaaggtggagttttcaagcttgagctattct 232
|||||||||| || | ||||| || || || || |||||||||||||| ||| ||||||
Sbjct: 253 tgatccttggaccatcgcagtcgccatacgagggaggagttttcaagctcgagttattct 312
Query: 233 tgcctgaggaatatccaatggctgccccgaaagttaggtttctcaccaaaatttaccatc 292
||||||| ||||||||||||||| | || || ||| | |||||||| |||||||| || |
Sbjct: 313 tgcctgaagaatatccaatggctccaccaaaggttcgttttctcacaaaaatttatcacc 372
Query: 293 cgaacattgacaagcttggtaggatatgcctcgacattcttaaggacaaatggagtcccg 352
| ||||||||||||||||||||||||||||| || ||| | |||||||| |||||||| |
Sbjct: 373 ctaacattgacaagcttggtaggatatgccttgatattttgaaggacaagtggagtcctg 432
Query: 353 ctcttcagatacgtacagttctgctcagcattcaggcacttctgagtgccccaaatccag 412
| |||||||| || |||||| | | ||||| |||||| | || ||||| ||||| || |
Sbjct: 433 cccttcagattcgaacagttttattgagcatccaggcattgcttagtgctccaaaccctg 492
Query: 413 atgatcctctctcagacaacattgcgaaacactggaaatcaaatgaagctgaagcttttg 472
|||| || || | ||||| | || || |||||||| | ||||||||||||||| | |
Sbjct: 493 atgacccacttgccgacaatgtggcaaagcactggaaggctaatgaagctgaagctgtag 552
Query: 473 agacagcgaaggagtggac 491
| ||||| || ||||||||
Sbjct: 553 aaacagctaaagagtggac 571
>gb|CN139896.1|CN139896 OX1_24_G04.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_24_G04_A002 5', mRNA sequence
Length = 794
Score = 276 bits (139), Expect = 3e-072
Identities = 364/439 (82%)
Strand = Plus / Plus
Query: 53 ccatggccaacagcaacctcccgcgccgaatcatcaaggagacgcagcggctcctcagcg 112
|||||||||||||||||||||| ||||| ||||||||||||||||||||| | |||||||
Sbjct: 131 ccatggccaacagcaacctcccccgccgcatcatcaaggagacgcagcggttgctcagcg 190
Query: 113 aaccagcgccggggattagcgcgtcgccgtcggaagagaacatgcggtacttcaatgtca 172
| ||||| || || || || || ||||| || || ||||||||||| |||||||||||||
Sbjct: 191 agccagctccaggaatcagtgcctcgccatcagaggagaacatgcgctacttcaatgtca 250
Query: 173 tgatccttggccccgcacagtcaccctatgaaggtggagttttcaagcttgagctattct 232
|||||||||| || | ||||| || || || || |||||||||||||| ||| ||||||
Sbjct: 251 tgatccttggaccatcgcagtcgccatacgagggaggagttttcaagctcgagttattct 310
Query: 233 tgcctgaggaatatccaatggctgccccgaaagttaggtttctcaccaaaatttaccatc 292
||||||| ||||||||||||||| | || || ||| | |||||||| |||||||| || |
Sbjct: 311 tgcctgaagaatatccaatggctccaccaaaggttcgttttctcacaaaaatttatcacc 370
Query: 293 cgaacattgacaagcttggtaggatatgcctcgacattcttaaggacaaatggagtcccg 352
| ||||||||||||||||||||||||||||| || ||| | |||||||| |||||||| |
Sbjct: 371 ctaacattgacaagcttggtaggatatgccttgatattttgaaggacaagtggagtcctg 430
Query: 353 ctcttcagatacgtacagttctgctcagcattcaggcacttctgagtgccccaaatccag 412
| |||||||| || |||||| | | ||||| |||||| | || ||||| ||||| || |
Sbjct: 431 cccttcagattcgaacagttttattgagcatccaggcattgcttagtgctccaaaccctg 490
Query: 413 atgatcctctctcagacaacattgcgaaacactggaaatcaaatgaagctgaagcttttg 472
|||| || || | ||||| | || || |||||||| | ||||||||||||||| | |
Sbjct: 491 atgacccacttgccgacaatgtggcaaagcactggaaggctaatgaagctgaagctgtag 550
Query: 473 agacagcgaaggagtggac 491
| ||||| || ||||||||
Sbjct: 551 aaacagctaaagagtggac 569
>gb|CD427769.1|CD427769 ETH1_34_G01.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_34_G01_A002 3', mRNA sequence
Length = 552
Score = 274 bits (138), Expect = 1e-071
Identities = 264/306 (86%)
Strand = Plus / Plus
Query: 198 ctatgaaggtggagttttcaagcttgagctattcttgcctgaggaatatccaatggctgc 257
||||||||| |||||||| |||||||| || || || || ||||||||||||||||||||
Sbjct: 1 ctatgaagggggagtttttaagcttgaactctttttacccgaggaatatccaatggctgc 60
Query: 258 cccgaaagttaggtttctcaccaaaatttaccatccgaacattgacaagcttggtaggat 317
||| || ||||||||||| ||||| ||||| ||||| |||||||||||||||||||||||
Sbjct: 61 cccaaaggttaggtttctgaccaagatttatcatcccaacattgacaagcttggtaggat 120
Query: 318 atgcctcgacattcttaaggacaaatggagtcccgctcttcagatacgtacagttctgct 377
||||||||||||||| |||||||||||||| || || |||||||| || || ||||| |
Sbjct: 121 atgcctcgacattctcaaggacaaatggagcccggcacttcagattcgcacggttctttt 180
Query: 378 cagcattcaggcacttctgagtgccccaaatccagatgatcctctctcagacaacattgc 437
|| || ||||| || |||||||| |||||||||||||| ||||| || || ||||||||
Sbjct: 181 gagtatacaggctctcctgagtgcgccaaatccagatgaccctctttccgataacattgc 240
Query: 438 gaaacactggaaatcaaatgaagctgaagcttttgagacagcgaaggagtggactcgcct 497
|| ||||||||| | ||||| | |||||| |||| ||||| |||||||||||||||||
Sbjct: 241 aaagcactggaaagccaatgaggtagaagctgttgaaacagccaaggagtggactcgcct 300
Query: 498 gtatgc 503
||||||
Sbjct: 301 gtatgc 306
>gb|AW745521.1|AW745521 WS1_35_A05.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 549
Score = 270 bits (136), Expect = 2e-070
Identities = 274/320 (85%)
Strand = Plus / Plus
Query: 53 ccatggccaacagcaacctcccgcgccgaatcatcaaggagacgcagcggctcctcagcg 112
|||||||||||||||||||||| ||||| ||||||||||||||||||||| | |||||||
Sbjct: 126 ccatggccaacagcaacctcccccgccgcatcatcaaggagacgcagcggttgctcagcg 185
Query: 113 aaccagcgccggggattagcgcgtcgccgtcggaagagaacatgcggtacttcaatgtca 172
| ||||| || || || || || ||||| || || ||||||||||| |||||||||||||
Sbjct: 186 agccagctccaggaatcagtgcctcgccatcagaggagaacatgcgctacttcaatgtca 245
Query: 173 tgatccttggccccgcacagtcaccctatgaaggtggagttttcaagcttgagctattct 232
|||||||||| || | ||||| || || || || |||||||||||||| ||| ||||||
Sbjct: 246 tgatccttggaccatcgcagtcgccatacgagggaggagttttcaagctcgagttattct 305
Query: 233 tgcctgaggaatatccaatggctgccccgaaagttaggtttctcaccaaaatttaccatc 292
||||||| ||||||||||||||| | || || ||| | |||||||| |||||||| || |
Sbjct: 306 tgcctgaagaatatccaatggctccaccaaaggttcgttttctcacaaaaatttatcacc 365
Query: 293 cgaacattgacaagcttggtaggatatgcctcgacattcttaaggacaaatggagtcccg 352
| ||||||||||||||||||||||||||||| || ||| | |||||||| |||||||| |
Sbjct: 366 ctaacattgacaagcttggtaggatatgccttgatattttgaaggacaagtggagtcctg 425
Query: 353 ctcttcagatacgtacagtt 372
| |||||||| || ||||||
Sbjct: 426 cccttcagattcgaacagtt 445
>gb|BG463946.1|BG463946 EM1_52_G07.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 517
Score = 270 bits (136), Expect = 2e-070
Identities = 274/320 (85%)
Strand = Plus / Plus
Query: 53 ccatggccaacagcaacctcccgcgccgaatcatcaaggagacgcagcggctcctcagcg 112
|||||||||||||||||||||| ||||| ||||||||||||||||||||| | |||||||
Sbjct: 133 ccatggccaacagcaacctcccccgccgcatcatcaaggagacgcagcggttgctcagcg 192
Query: 113 aaccagcgccggggattagcgcgtcgccgtcggaagagaacatgcggtacttcaatgtca 172
| ||||| || || || || || ||||| || || ||||||||||| |||||||||||||
Sbjct: 193 agccagctccaggaatcagtgcctcgccatcagaggagaacatgcgctacttcaatgtca 252
Query: 173 tgatccttggccccgcacagtcaccctatgaaggtggagttttcaagcttgagctattct 232
|||||||||| || | ||||| || || || || |||||||||||||| ||| ||||||
Sbjct: 253 tgatccttggaccatcgcagtcgccatacgagggaggagttttcaagctcgagttattct 312
Query: 233 tgcctgaggaatatccaatggctgccccgaaagttaggtttctcaccaaaatttaccatc 292
||||||| ||||||||||||||| | || || ||| | |||||||| |||||||| || |
Sbjct: 313 tgcctgaagaatatccaatggctccaccaaaggttcgttttctcacaaaaatttatcacc 372
Query: 293 cgaacattgacaagcttggtaggatatgcctcgacattcttaaggacaaatggagtcccg 352
| ||||||||||||||||||||||||||||| || ||| | |||||||| |||||||| |
Sbjct: 373 ctaacattgacaagcttggtaggatatgccttgatattttgaaggacaagtggagtcctg 432
Query: 353 ctcttcagatacgtacagtt 372
| |||||||| || ||||||
Sbjct: 433 cccttcagattcgaacagtt 452
>gb|BG559265.1|BG559265 RHIZ2_52_F09.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 553
Score = 270 bits (136), Expect = 2e-070
Identities = 346/416 (83%)
Strand = Plus / Plus
Query: 53 ccatggccaacagcaacctcccgcgccgaatcatcaaggagacgcagcggctcctcagcg 112
|||||||||||||||||||||| ||||| ||||||||||||||||||||| | |||||||
Sbjct: 130 ccatggccaacagcaacctcccccgccgcatcatcaaggagacgcagcggttgctcagcg 189
Query: 113 aaccagcgccggggattagcgcgtcgccgtcggaagagaacatgcggtacttcaatgtca 172
| ||||| || || || || || ||||| || || ||||||||||| |||||||||||||
Sbjct: 190 agccagctccaggaatcagtgcctcgccatcagaggagaacatgcgctacttcaatgtca 249
Query: 173 tgatccttggccccgcacagtcaccctatgaaggtggagttttcaagcttgagctattct 232
|||||||||| || | ||||| || || || || |||||||||||||| ||| ||||||
Sbjct: 250 tgatccttggaccatcgcagtcgccatacgagggaggagttttcaagctcgagttattct 309
Query: 233 tgcctgaggaatatccaatggctgccccgaaagttaggtttctcaccaaaatttaccatc 292
||||||| ||||||||||||||| | || || ||| | |||||||| |||||||| || |
Sbjct: 310 tgcctgaagaatatccaatggctccaccaaaggttcgttttctcacaaaaatttatcacc 369
Query: 293 cgaacattgacaagcttggtaggatatgcctcgacattcttaaggacaaatggagtcccg 352
| ||||||||||||||||||||||||||||| || ||| | |||||||| |||||||| |
Sbjct: 370 ctaacattgacaagcttggtaggatatgccttgatattttgaaggacaagtggagtcctg 429
Query: 353 ctcttcagatacgtacagttctgctcagcattcaggcacttctgagtgccccaaatccag 412
| |||||||| || |||||| | | ||||| |||||| | || ||||| ||||| || |
Sbjct: 430 cccttcagattcgaacagttttattgagcatccaggcattgcttagtgctccaaaccctg 489
Query: 413 atgatcctctctcagacaacattgcgaaacactggaaatcaaatgaagctgaagct 468
|||| || || | ||||| | || || |||||||| | |||||||||||||||
Sbjct: 490 atgacccacttgccgacaatgtggcaaagcactggaaggctaatgaagctgaagct 545
>gb|CD211812.1|CD211812 HS1_64_D06.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_64_D06_A012 5', mRNA sequence
Length = 555
Score = 270 bits (136), Expect = 2e-070
Identities = 274/320 (85%)
Strand = Plus / Plus
Query: 53 ccatggccaacagcaacctcccgcgccgaatcatcaaggagacgcagcggctcctcagcg 112
|||||||||||||||||||||| ||||| ||||||||||||||||||||| | |||||||
Sbjct: 149 ccatggccaacagcaacctcccccgccgcatcatcaaggagacgcagcggttgctcagcg 208
Query: 113 aaccagcgccggggattagcgcgtcgccgtcggaagagaacatgcggtacttcaatgtca 172
| ||||| || || || || || ||||| || || ||||||||||| |||||||||||||
Sbjct: 209 agccagctccaggaatcagtgcctcgccatcagaggagaacatgcgctacttcaatgtca 268
Query: 173 tgatccttggccccgcacagtcaccctatgaaggtggagttttcaagcttgagctattct 232
|||||||||| || | ||||| || || || || |||||||||||||| ||| ||||||
Sbjct: 269 tgatccttggaccatcgcagtcgccatacgagggaggagttttcaagctcgagttattct 328
Query: 233 tgcctgaggaatatccaatggctgccccgaaagttaggtttctcaccaaaatttaccatc 292
||||||| ||||||||||||||| | || || ||| | |||||||| |||||||| || |
Sbjct: 329 tgcctgaagaatatccaatggctccaccaaaggttcgttttctcacaaaaatttatcacc 388
Query: 293 cgaacattgacaagcttggtaggatatgcctcgacattcttaaggacaaatggagtcccg 352
| ||||||||||||||||||||||||||||| || ||| | |||||||| |||||||| |
Sbjct: 389 ctaacattgacaagcttggtaggatatgccttgatattttgaaggacaagtggagtcctg 448
Query: 353 ctcttcagatacgtacagtt 372
| |||||||| || ||||||
Sbjct: 449 cccttcagattcgaacagtt 468
>gb|CF761219.1|CF761219 DSAF1_72_E10.b1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_72_E10_A011 5', mRNA sequence
Length = 422
Score = 250 bits (126), Expect = 2e-064
Identities = 231/266 (86%)
Strand = Plus / Plus
Query: 238 gaggaatatccaatggctgccccgaaagttaggtttctcaccaaaatttaccatccgaac 297
||||||||||||||||||||||| || ||||||||||| ||||| ||||| ||||| |||
Sbjct: 16 gaggaatatccaatggctgccccaaaggttaggtttctgaccaagatttatcatcccaac 75
Query: 298 attgacaagcttggtaggatatgcctcgacattcttaaggacaaatggagtcccgctctt 357
||||||||||||||||||||||||||||||||||| |||||||||||||| || || |||
Sbjct: 76 attgacaagcttggtaggatatgcctcgacattctcaaggacaaatggagcccggcactt 135
Query: 358 cagatacgtacagttctgctcagcattcaggcacttctgagtgccccaaatccagatgat 417
||||| || || ||||| | || || ||||| || |||||||| ||||||||||||||
Sbjct: 136 cagattcgcacggttcttttgagtatacaggctctcctgagtgcgccaaatccagatgac 195
Query: 418 cctctctcagacaacattgcgaaacactggaaatcaaatgaagctgaagcttttgagaca 477
||||| || || |||||||| || ||||||||| | ||||| | |||||| |||| |||
Sbjct: 196 cctctttccgataacattgcaaagcactggaaagccaatgaggtagaagctgttgaaaca 255
Query: 478 gcgaaggagtggactcgcctgtatgc 503
|| |||||||||||||||||||||||
Sbjct: 256 gccaaggagtggactcgcctgtatgc 281
>gb|CF770011.1|CF770011 DSBF1_5_D10.b1_A010 Drought-stressed before flowering Sorghum
bicolor cDNA clone DSBF1_5_D10_A010 5', mRNA sequence
Length = 534
Score = 250 bits (126), Expect = 2e-064
Identities = 231/266 (86%)
Strand = Plus / Plus
Query: 238 gaggaatatccaatggctgccccgaaagttaggtttctcaccaaaatttaccatccgaac 297
||||||||||||||||||||||| || ||||||||||| ||||| ||||| ||||| |||
Sbjct: 16 gaggaatatccaatggctgccccaaaggttaggtttctgaccaagatttatcatcccaac 75
Query: 298 attgacaagcttggtaggatatgcctcgacattcttaaggacaaatggagtcccgctctt 357
||||||||||||||||||||||||||||||||||| |||||||||||||| || || |||
Sbjct: 76 attgacaagcttggtaggatatgcctcgacattctcaaggacaaatggagcccggcactt 135
Query: 358 cagatacgtacagttctgctcagcattcaggcacttctgagtgccccaaatccagatgat 417
||||| || || ||||| | || || ||||| || |||||||| ||||||||||||||
Sbjct: 136 cagattcgcacggttcttttgagtatacaggctctcctgagtgcgccaaatccagatgac 195
Query: 418 cctctctcagacaacattgcgaaacactggaaatcaaatgaagctgaagcttttgagaca 477
||||| || || |||||||| || ||||||||| | ||||| | |||||| |||| |||
Sbjct: 196 cctctttccgataacattgcaaagcactggaaagccaatgaggtagaagctgttgaaaca 255
Query: 478 gcgaaggagtggactcgcctgtatgc 503
|| |||||||||||||||||||||||
Sbjct: 256 gccaaggagtggactcgcctgtatgc 281
>gb|CF770095.1|CF770095 DSBF1_5_D10.g1_A010 Drought-stressed before flowering Sorghum
bicolor cDNA clone DSBF1_5_D10_A010 3', mRNA sequence
Length = 526
Score = 250 bits (126), Expect = 2e-064
Identities = 231/266 (86%)
Strand = Plus / Plus
Query: 238 gaggaatatccaatggctgccccgaaagttaggtttctcaccaaaatttaccatccgaac 297
||||||||||||||||||||||| || ||||||||||| ||||| ||||| ||||| |||
Sbjct: 16 gaggaatatccaatggctgccccaaaggttaggtttctgaccaagatttatcatcccaac 75
Query: 298 attgacaagcttggtaggatatgcctcgacattcttaaggacaaatggagtcccgctctt 357
||||||||||||||||||||||||||||||||||| |||||||||||||| || || |||
Sbjct: 76 attgacaagcttggtaggatatgcctcgacattctcaaggacaaatggagcccggcactt 135
Query: 358 cagatacgtacagttctgctcagcattcaggcacttctgagtgccccaaatccagatgat 417
||||| || || ||||| | || || ||||| || |||||||| ||||||||||||||
Sbjct: 136 cagattcgcacggttcttttgagtatacaggctctcctgagtgcgccaaatccagatgac 195
Query: 418 cctctctcagacaacattgcgaaacactggaaatcaaatgaagctgaagcttttgagaca 477
||||| || || |||||||| || ||||||||| | ||||| | |||||| |||| |||
Sbjct: 196 cctctttccgataacattgcaaagcactggaaagccaatgaggtagaagctgttgaaaca 255
Query: 478 gcgaaggagtggactcgcctgtatgc 503
|| |||||||||||||||||||||||
Sbjct: 256 gccaaggagtggactcgcctgtatgc 281
>gb|BG158055.1|BG158055 EM1_7_H04.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 424
Score = 248 bits (125), Expect = 7e-064
Identities = 248/289 (85%)
Strand = Plus / Plus
Query: 53 ccatggccaacagcaacctcccgcgccgaatcatcaaggagacgcagcggctcctcagcg 112
|||||||||||||||||||||| ||||| ||||||||||||||||||||| | |||||||
Sbjct: 133 ccatggccaacagcaacctcccccgccgcatcatcaaggagacgcagcggttgctcagcg 192
Query: 113 aaccagcgccggggattagcgcgtcgccgtcggaagagaacatgcggtacttcaatgtca 172
| ||||| || || || || || ||||| || || ||||||||||| |||||||||||||
Sbjct: 193 agccagctccaggaatcagtgcctcgccatcagaggagaacatgcgctacttcaatgtca 252
Query: 173 tgatccttggccccgcacagtcaccctatgaaggtggagttttcaagcttgagctattct 232
|||||||||| || | ||||| || || || || |||||||||||||| ||| ||||||
Sbjct: 253 tgatccttggaccatcgcagtcgccatacgagggaggagttttcaagctcgagttattct 312
Query: 233 tgcctgaggaatatccaatggctgccccgaaagttaggtttctcaccaaaatttaccatc 292
||||||| ||||||||||||||| | || || ||| | |||||||| |||||||| || |
Sbjct: 313 tgcctgaagaatatccaatggctccaccaaaggttcgttttctcacaaaaatttatcacc 372
Query: 293 cgaacattgacaagcttggtaggatatgcctcgacattcttaaggacaa 341
| ||||||||||||||||||||||||||||| || ||| | ||||||||
Sbjct: 373 ctaacattgacaagcttggtaggatatgccttgatattttgaaggacaa 421
>gb|BG559023.1|BG559023 RHIZ2_53_F03.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 515
Score = 248 bits (125), Expect = 7e-064
Identities = 230/265 (86%)
Strand = Plus / Plus
Query: 239 aggaatatccaatggctgccccgaaagttaggtttctcaccaaaatttaccatccgaaca 298
|||||||||||||||||||||| || ||||||||||| ||||| ||||| ||||| ||||
Sbjct: 1 aggaatatccaatggctgccccaaaggttaggtttctgaccaagatttatcatcccaaca 60
Query: 299 ttgacaagcttggtaggatatgcctcgacattcttaaggacaaatggagtcccgctcttc 358
|||||||||||||||||||||||||||||||||| |||||||||||||| || || ||||
Sbjct: 61 ttgacaagcttggtaggatatgcctcgacattctcaaggacaaatggagcccggcacttc 120
Query: 359 agatacgtacagttctgctcagcattcaggcacttctgagtgccccaaatccagatgatc 418
|||| || || ||||| | || || ||||| || |||||||| |||||||||||||| |
Sbjct: 121 agattcgaacggttcttttgagtatacaggctctcctgagtgcgccaaatccagatgacc 180
Query: 419 ctctctcagacaacattgcgaaacactggaaatcaaatgaagctgaagcttttgagacag 478
|||| || || |||||||| || ||||||||| | ||||| | |||||| |||| ||||
Sbjct: 181 ctctttccgataacattgcaaagcactggaaagccaatgaggtagaagctgttgaaacag 240
Query: 479 cgaaggagtggactcgcctgtatgc 503
| |||||||||||||||||||||||
Sbjct: 241 ccaaggagtggactcgcctgtatgc 265
>gb|CD222706.1|CD222706 CCC1_23_D07.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_23_D07_A007 5', mRNA sequence
Length = 667
Score = 238 bits (120), Expect = 7e-061
Identities = 342/416 (82%)
Strand = Plus / Plus
Query: 76 cgccgaatcatcaaggagacgcagcggctcctcagcgaaccagcgccggggattagcgcg 135
||||| ||||||||||||||||||||| | |||||||| ||||| || || || || ||
Sbjct: 43 cgccgcatcatcaaggagacgcagcggttgctcagcgagccagctccaggaatcagtgcc 102
Query: 136 tcgccgtcggaagagaacatgcggtacttcaatgtcatgatccttggccccgcacagtca 195
||||| || || ||||||||||| ||||||||||||||||||||||| || | |||||
Sbjct: 103 tcgccatcagaggagaacatgcgctacttcaatgtcatgatccttggaccatcgcagtcg 162
Query: 196 ccctatgaaggtggagttttcaagcttgagctattcttgcctgaggaatatccaatggct 255
|| || || || |||||||||||||| ||| ||||||||||||| |||||||||||||||
Sbjct: 163 ccatacgagggaggagttttcaagctcgagttattcttgcctgaagaatatccaatggct 222
Query: 256 gccccgaaagttaggtttctcaccaaaatttaccatccgaacattgacaagcttggtagg 315
| || || ||| | |||||||| |||||||| || || |||||||||||||||||||||
Sbjct: 223 ccaccaaaggttcgttttctcacaaaaatttatcaccctaacattgacaagcttggtagg 282
Query: 316 atatgcctcgacattcttaaggacaaatggagtcccgctcttcagatacgtacagttctg 375
|||||||| || ||| | |||||||| |||||||| || |||||||| || |||||| |
Sbjct: 283 atatgccttgatattttgaaggacaagtggagtcctgcccttcagattcgaacagtttta 342
Query: 376 ctcagcattcaggcacttctgagtgccccaaatccagatgatcctctctcagacaacatt 435
| ||||| |||||| | || ||||| ||||| || ||||| || || | ||||| |
Sbjct: 343 ttgagcatccaggcattgcttagtgctccaaaccctgatgacccacttgccgacaatgtg 402
Query: 436 gcgaaacactggaaatcaaatgaagctgaagcttttgagacagcgaaggagtggac 491
|| || |||||||| | ||||||||||||||| | || ||||| || ||||||||
Sbjct: 403 gcaaagcactggaaggctaatgaagctgaagctgtagaaacagctaaagagtggac 458
>gb|AW745172.1|AW745172 LG1_386_G05.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 506
Score = 230 bits (116), Expect = 2e-058
Identities = 221/256 (86%)
Strand = Plus / Plus
Query: 248 caatggctgccccgaaagttaggtttctcaccaaaatttaccatccgaacattgacaagc 307
||||||||||||| || ||||||||||| ||||| ||||| ||||| |||||||||||||
Sbjct: 1 caatggctgccccaaaggttaggtttctgaccaagatttatcatcccaacattgacaagc 60
Query: 308 ttggtaggatatgcctcgacattcttaaggacaaatggagtcccgctcttcagatacgta 367
||||||||||||||||||||||||| |||||||||||||| || || |||||||| || |
Sbjct: 61 ttggtaggatatgcctcgacattctcaaggacaaatggagcccggcacttcagattcgca 120
Query: 368 cagttctgctcagcattcaggcacttctgagtgccccaaatccagatgatcctctctcag 427
| ||||| | || || ||||| || |||||||| |||||||||||||| ||||| || |
Sbjct: 121 cggttcttttgagtatacaggctctcctgagtgcgccaaatccagatgaccctctttccg 180
Query: 428 acaacattgcgaaacactggaaatcaaatgaagctgaagcttttgagacagcgaaggagt 487
| |||||||| || ||||||||| | ||||| | |||||| |||| ||||| |||||||
Sbjct: 181 ataacattgcaaagcactggaaagccaatgaggtagaagctgttgaaacagccaaggagt 240
Query: 488 ggactcgcctgtatgc 503
||||||||||||||||
Sbjct: 241 ggactcgcctgtatgc 256
>gb|AW286703.2|AW286703 LG1_204_C06.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 322
Score = 228 bits (115), Expect = 6e-058
Identities = 181/203 (89%)
Strand = Plus / Plus
Query: 55 atggccaacagcaacctcccgcgccgaatcatcaaggagacgcagcggctcctcagcgaa 114
||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||
Sbjct: 120 atggccaacagcaacctcccgcggcggatcatcaaggagacgcagcggctgctcagcgag 179
Query: 115 ccagcgccggggattagcgcgtcgccgtcggaagagaacatgcggtacttcaatgtcatg 174
||||| |||||||| ||||||||||| ||||| ||||||||||| |||||||| || |||
Sbjct: 180 ccagcaccggggatcagcgcgtcgccctcggaggagaacatgcgctacttcaacgttatg 239
Query: 175 atccttggccccgcacagtcaccctatgaaggtggagttttcaagcttgagctattcttg 234
|||||||| || || ||||| ||||||||||| |||||||| |||||||| || || ||
Sbjct: 240 atccttgggccggcgcagtcgccctatgaagggggagtttttaagcttgaactcttttta 299
Query: 235 cctgaggaatatccaatggctgc 257
|| ||||||||||||||||||||
Sbjct: 300 cccgaggaatatccaatggctgc 322
>gb|BG465889.1|BG465889 RHIZ2_45_H03.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 504
Score = 226 bits (114), Expect = 3e-057
Identities = 219/254 (86%)
Strand = Plus / Plus
Query: 250 atggctgccccgaaagttaggtttctcaccaaaatttaccatccgaacattgacaagctt 309
||||||||||| || ||||||||||| ||||| ||||| ||||| |||||||||||||||
Sbjct: 1 atggctgccccaaaggttaggtttctgaccaagatttatcatcccaacattgacaagctt 60
Query: 310 ggtaggatatgcctcgacattcttaaggacaaatggagtcccgctcttcagatacgtaca 369
||||||||||||||||||||||| |||||||||||||| || || |||||||| || ||
Sbjct: 61 ggtaggatatgcctcgacattctcaaggacaaatggagcccggcacttcagattcgaacg 120
Query: 370 gttctgctcagcattcaggcacttctgagtgccccaaatccagatgatcctctctcagac 429
||||| | || || ||||| || |||||||| |||||||||||||| ||||| || ||
Sbjct: 121 gttcttttgagtatacaggctctcctgagtgcgccaaatccagatgaccctctttccgat 180
Query: 430 aacattgcgaaacactggaaatcaaatgaagctgaagcttttgagacagcgaaggagtgg 489
|||||||| || ||||||||| | ||||| | |||||| |||| ||||| |||||||||
Sbjct: 181 aacattgcaaagcactggaaagccaatgaggtagaagctgttgaaacagccaaggagtgg 240
Query: 490 actcgcctgtatgc 503
||||||||||||||
Sbjct: 241 actcgcctgtatgc 254
>gb|CN139818.1|CN139818 OX1_24_G04.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_24_G04_A002 3', mRNA sequence
Length = 710
Score = 220 bits (111), Expect = 2e-055
Identities = 330/403 (81%)
Strand = Plus / Plus
Query: 89 aggagacgcagcggctcctcagcgaaccagcgccggggattagcgcgtcgccgtcggaag 148
|||||||||||||| | |||||||| ||||| || || || || || ||||| || || |
Sbjct: 1 aggagacgcagcggttgctcagcgagccagctccaggaatcagtgcctcgccatcagagg 60
Query: 149 agaacatgcggtacttcaatgtcatgatccttggccccgcacagtcaccctatgaaggtg 208
|||||||||| ||||||||||||||||||||||| || | ||||| || || || || |
Sbjct: 61 agaacatgcgctacttcaatgtcatgatccttggaccatcgcagtcgccatacgagggag 120
Query: 209 gagttttcaagcttgagctattcttgcctgaggaatatccaatggctgccccgaaagtta 268
||||||||||||| ||| ||||||||||||| ||||||||||||||| | || || |||
Sbjct: 121 gagttttcaagctcgagttattcttgcctgaagaatatccaatggctccaccaaaggttc 180
Query: 269 ggtttctcaccaaaatttaccatccgaacattgacaagcttggtaggatatgcctcgaca 328
| |||||||| |||||||| || || ||||||||||||||||||||||||||||| || |
Sbjct: 181 gttttctcacaaaaatttatcaccctaacattgacaagcttggtaggatatgccttgata 240
Query: 329 ttcttaaggacaaatggagtcccgctcttcagatacgtacagttctgctcagcattcagg 388
|| | |||||||| |||||||| || |||||||| || |||||| | | ||||| ||||
Sbjct: 241 ttttgaaggacaagtggagtcctgcccttcagattcgaacagttttattgagcatccagg 300
Query: 389 cacttctgagtgccccaaatccagatgatcctctctcagacaacattgcgaaacactgga 448
|| | || ||||| ||||| || ||||| || || | ||||| | || || |||||||
Sbjct: 301 cattgcttagtgctccaaaccctgatgacccacttgccgacaatgtggcaaagcactgga 360
Query: 449 aatcaaatgaagctgaagcttttgagacagcgaaggagtggac 491
| | ||||||||||||||| | || ||||| || ||||||||
Sbjct: 361 aggctaatgaagctgaagctgtagaaacagctaaagagtggac 403
>gb|BE365066.1|BE365066 PI1_24_D07.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 546
Score = 202 bits (102), Expect = 4e-050
Identities = 213/250 (85%)
Strand = Plus / Plus
Query: 57 ggccaacagcaacctcccgcgccgaatcatcaaggagacgcagcggctcctcagcgaacc 116
|||||||||||||||||| ||||| ||||||||||||||||||||| | |||||||| ||
Sbjct: 9 ggccaacagcaacctcccccgccgcatcatcaaggagacgcagcggttgctcagcgagcc 68
Query: 117 agcgccggggattagcgcgtcgccgtcggaagagaacatgcggtacttcaatgtcatgat 176
||| || || || || || ||||| || || ||||||||||| |||||||||||||||||
Sbjct: 69 agctccaggaatcagtgcctcgccatcagaggagaacatgcgctacttcaatgtcatgat 128
Query: 177 ccttggccccgcacagtcaccctatgaaggtggagttttcaagcttgagctattcttgcc 236
|||||| || | ||||| || || || || |||||||||||||| ||| ||||||||||
Sbjct: 129 ccttggaccatcgcagtcgccatacgagggaggagttttcaagctcgagttattcttgcc 188
Query: 237 tgaggaatatccaatggctgccccgaaagttaggtttctcaccaaaatttaccatccgaa 296
||| ||||||||||||||| | || || ||| | |||||||| |||||||| || || ||
Sbjct: 189 tgaagaatatccaatggctccaccaaaggttcgttttctcacaaaaatttatcaccctaa 248
Query: 297 cattgacaag 306
||||||||||
Sbjct: 249 cattgacaag 258
Score = 63.9 bits (32), Expect = 2e-008
Identities = 59/68 (86%)
Strand = Plus / Plus
Query: 305 agcttggtaggatatgcctcgacattcttaaggacaaatggagtcccgctcttcagatac 364
||||||||||||||||||| || ||| | |||||||| |||||||| || |||||||| |
Sbjct: 327 agcttggtaggatatgccttgatattttgaaggacaagtggagtcctgcccttcagattc 386
Query: 365 gtacagtt 372
| ||||||
Sbjct: 387 gaacagtt 394
>gb|BE365067.1|BE365067 PI1_24_D06.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 576
Score = 202 bits (102), Expect = 4e-050
Identities = 213/250 (85%)
Strand = Plus / Plus
Query: 57 ggccaacagcaacctcccgcgccgaatcatcaaggagacgcagcggctcctcagcgaacc 116
|||||||||||||||||| ||||| ||||||||||||||||||||| | |||||||| ||
Sbjct: 9 ggccaacagcaacctcccccgccgcatcatcaaggagacgcagcggttgctcagcgagcc 68
Query: 117 agcgccggggattagcgcgtcgccgtcggaagagaacatgcggtacttcaatgtcatgat 176
||| || || || || || ||||| || || ||||||||||| |||||||||||||||||
Sbjct: 69 agctccaggaatcagtgcctcgccatcagaggagaacatgcgctacttcaatgtcatgat 128
Query: 177 ccttggccccgcacagtcaccctatgaaggtggagttttcaagcttgagctattcttgcc 236
|||||| || | ||||| || || || || |||||||||||||| ||| ||||||||||
Sbjct: 129 ccttggaccatcgcagtcgccatacgagggaggagttttcaagctcgagttattcttgcc 188
Query: 237 tgaggaatatccaatggctgccccgaaagttaggtttctcaccaaaatttaccatccgaa 296
||| ||||||||||||||| | || || ||| | |||||||| |||||||| || || ||
Sbjct: 189 tgaagaatatccaatggctccaccaaaggttcgttttctcacaaaaatttatcaccctaa 248
Query: 297 cattgacaag 306
||||||||||
Sbjct: 249 cattgacaag 258
Score = 63.9 bits (32), Expect = 2e-008
Identities = 59/68 (86%)
Strand = Plus / Plus
Query: 305 agcttggtaggatatgcctcgacattcttaaggacaaatggagtcccgctcttcagatac 364
||||||||||||||||||| || ||| | |||||||| |||||||| || |||||||| |
Sbjct: 327 agcttggtaggatatgccttgatattttgaaggacaagtggagtcctgcccttcagattc 386
Query: 365 gtacagtt 372
| ||||||
Sbjct: 387 gaacagtt 394
>gb|BE365076.1|BE365076 PI1_24_F07.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 559
Score = 202 bits (102), Expect = 4e-050
Identities = 213/250 (85%)
Strand = Plus / Plus
Query: 57 ggccaacagcaacctcccgcgccgaatcatcaaggagacgcagcggctcctcagcgaacc 116
|||||||||||||||||| ||||| ||||||||||||||||||||| | |||||||| ||
Sbjct: 9 ggccaacagcaacctcccccgccgcatcatcaaggagacgcagcggttgctcagcgagcc 68
Query: 117 agcgccggggattagcgcgtcgccgtcggaagagaacatgcggtacttcaatgtcatgat 176
||| || || || || || ||||| || || ||||||||||| |||||||||||||||||
Sbjct: 69 agctccaggaatcagtgcctcgccatcagaggagaacatgcgctacttcaatgtcatgat 128
Query: 177 ccttggccccgcacagtcaccctatgaaggtggagttttcaagcttgagctattcttgcc 236
|||||| || | ||||| || || || || |||||||||||||| ||| ||||||||||
Sbjct: 129 ccttggaccatcgcagtcgccatacgagggaggagttttcaagctcgagttattcttgcc 188
Query: 237 tgaggaatatccaatggctgccccgaaagttaggtttctcaccaaaatttaccatccgaa 296
||| ||||||||||||||| | || || ||| | |||||||| |||||||| || || ||
Sbjct: 189 tgaagaatatccaatggctccaccaaaggttcgttttctcacaaaaatttatcaccctaa 248
Query: 297 cattgacaag 306
||||||||||
Sbjct: 249 cattgacaag 258
Score = 63.9 bits (32), Expect = 2e-008
Identities = 59/68 (86%)
Strand = Plus / Plus
Query: 305 agcttggtaggatatgcctcgacattcttaaggacaaatggagtcccgctcttcagatac 364
||||||||||||||||||| || ||| | |||||||| |||||||| || |||||||| |
Sbjct: 327 agcttggtaggatatgccttgatattttgaaggacaagtggagtcctgcccttcagattc 386
Query: 365 gtacagtt 372
| ||||||
Sbjct: 387 gaacagtt 394
>gb|BE365077.1|BE365077 PI1_24_F06.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 628
Score = 202 bits (102), Expect = 4e-050
Identities = 213/250 (85%)
Strand = Plus / Plus
Query: 57 ggccaacagcaacctcccgcgccgaatcatcaaggagacgcagcggctcctcagcgaacc 116
|||||||||||||||||| ||||| ||||||||||||||||||||| | |||||||| ||
Sbjct: 9 ggccaacagcaacctcccccgccgcatcatcaaggagacgcagcggttgctcagcgagcc 68
Query: 117 agcgccggggattagcgcgtcgccgtcggaagagaacatgcggtacttcaatgtcatgat 176
||| || || || || || ||||| || || ||||||||||| |||||||||||||||||
Sbjct: 69 agctccaggaatcagtgcctcgccatcagaggagaacatgcgctacttcaatgtcatgat 128
Query: 177 ccttggccccgcacagtcaccctatgaaggtggagttttcaagcttgagctattcttgcc 236
|||||| || | ||||| || || || || |||||||||||||| ||| ||||||||||
Sbjct: 129 ccttggaccatcgcagtcgccatacgagggaggagttttcaagctcgagttattcttgcc 188
Query: 237 tgaggaatatccaatggctgccccgaaagttaggtttctcaccaaaatttaccatccgaa 296
||| ||||||||||||||| | || || ||| | |||||||| |||||||| || || ||
Sbjct: 189 tgaagaatatccaatggctccaccaaaggttcgttttctcacaaaaatttatcaccctaa 248
Query: 297 cattgacaag 306
||||||||||
Sbjct: 249 cattgacaag 258
Score = 63.9 bits (32), Expect = 2e-008
Identities = 59/68 (86%)
Strand = Plus / Plus
Query: 305 agcttggtaggatatgcctcgacattcttaaggacaaatggagtcccgctcttcagatac 364
||||||||||||||||||| || ||| | |||||||| |||||||| || |||||||| |
Sbjct: 327 agcttggtaggatatgccttgatattttgaaggacaagtggagtcctgcccttcagattc 386
Query: 365 gtacagtt 372
| ||||||
Sbjct: 387 gaacagtt 394
>gb|BE365080.1|BE365080 PI1_24_E07.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 624
Score = 202 bits (102), Expect = 4e-050
Identities = 213/250 (85%)
Strand = Plus / Plus
Query: 57 ggccaacagcaacctcccgcgccgaatcatcaaggagacgcagcggctcctcagcgaacc 116
|||||||||||||||||| ||||| ||||||||||||||||||||| | |||||||| ||
Sbjct: 9 ggccaacagcaacctcccccgccgcatcatcaaggagacgcagcggttgctcagcgagcc 68
Query: 117 agcgccggggattagcgcgtcgccgtcggaagagaacatgcggtacttcaatgtcatgat 176
||| || || || || || ||||| || || ||||||||||| |||||||||||||||||
Sbjct: 69 agctccaggaatcagtgcctcgccatcagaggagaacatgcgctacttcaatgtcatgat 128
Query: 177 ccttggccccgcacagtcaccctatgaaggtggagttttcaagcttgagctattcttgcc 236
|||||| || | ||||| || || || || |||||||||||||| ||| ||||||||||
Sbjct: 129 ccttggaccatcgcagtcgccatacgagggaggagttttcaagctcgagttattcttgcc 188
Query: 237 tgaggaatatccaatggctgccccgaaagttaggtttctcaccaaaatttaccatccgaa 296
||| ||||||||||||||| | || || ||| | |||||||| |||||||| || || ||
Sbjct: 189 tgaagaatatccaatggctccaccaaaggttcgttttctcacaaaaatttatcaccctaa 248
Query: 297 cattgacaag 306
||||||||||
Sbjct: 249 cattgacaag 258
Score = 63.9 bits (32), Expect = 2e-008
Identities = 59/68 (86%)
Strand = Plus / Plus
Query: 305 agcttggtaggatatgcctcgacattcttaaggacaaatggagtcccgctcttcagatac 364
||||||||||||||||||| || ||| | |||||||| |||||||| || |||||||| |
Sbjct: 327 agcttggtaggatatgccttgatattttgaaggacaagtggagtcctgcccttcagattc 386
Query: 365 gtacagtt 372
| ||||||
Sbjct: 387 gaacagtt 394
>gb|BE365081.1|BE365081 PI1_24_E06.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 547
Score = 202 bits (102), Expect = 4e-050
Identities = 213/250 (85%)
Strand = Plus / Plus
Query: 57 ggccaacagcaacctcccgcgccgaatcatcaaggagacgcagcggctcctcagcgaacc 116
|||||||||||||||||| ||||| ||||||||||||||||||||| | |||||||| ||
Sbjct: 9 ggccaacagcaacctcccccgccgcatcatcaaggagacgcagcggttgctcagcgagcc 68
Query: 117 agcgccggggattagcgcgtcgccgtcggaagagaacatgcggtacttcaatgtcatgat 176
||| || || || || || ||||| || || ||||||||||| |||||||||||||||||
Sbjct: 69 agctccaggaatcagtgcctcgccatcagaggagaacatgcgctacttcaatgtcatgat 128
Query: 177 ccttggccccgcacagtcaccctatgaaggtggagttttcaagcttgagctattcttgcc 236
|||||| || | ||||| || || || || |||||||||||||| ||| ||||||||||
Sbjct: 129 ccttggaccatcgcagtcgccatacgagggaggagttttcaagctcgagttattcttgcc 188
Query: 237 tgaggaatatccaatggctgccccgaaagttaggtttctcaccaaaatttaccatccgaa 296
||| ||||||||||||||| | || || ||| | |||||||| |||||||| || || ||
Sbjct: 189 tgaagaatatccaatggctccaccaaaggttcgttttctcacaaaaatttatcaccctaa 248
Query: 297 cattgacaag 306
||||||||||
Sbjct: 249 cattgacaag 258
Score = 63.9 bits (32), Expect = 2e-008
Identities = 59/68 (86%)
Strand = Plus / Plus
Query: 305 agcttggtaggatatgcctcgacattcttaaggacaaatggagtcccgctcttcagatac 364
||||||||||||||||||| || ||| | |||||||| |||||||| || |||||||| |
Sbjct: 327 agcttggtaggatatgccttgatattttgaaggacaagtggagtcctgcccttcagattc 386
Query: 365 gtacagtt 372
| ||||||
Sbjct: 387 gaacagtt 394
>gb|BE365095.1|BE365095 PI1_24_C06.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 355
Score = 202 bits (102), Expect = 4e-050
Identities = 213/250 (85%)
Strand = Plus / Plus
Query: 57 ggccaacagcaacctcccgcgccgaatcatcaaggagacgcagcggctcctcagcgaacc 116
|||||||||||||||||| ||||| ||||||||||||||||||||| | |||||||| ||
Sbjct: 9 ggccaacagcaacctcccccgccgcatcatcaaggagacgcagcggttgctcagcgagcc 68
Query: 117 agcgccggggattagcgcgtcgccgtcggaagagaacatgcggtacttcaatgtcatgat 176
||| || || || || || ||||| || || ||||||||||| |||||||||||||||||
Sbjct: 69 agctccaggaatcagtgcctcgccatcagaggagaacatgcgctacttcaatgtcatgat 128
Query: 177 ccttggccccgcacagtcaccctatgaaggtggagttttcaagcttgagctattcttgcc 236
|||||| || | ||||| || || || || |||||||||||||| ||| ||||||||||
Sbjct: 129 ccttggaccatcgcagtcgccatacgagggaggagttttcaagctcgagttattcttgcc 188
Query: 237 tgaggaatatccaatggctgccccgaaagttaggtttctcaccaaaatttaccatccgaa 296
||| ||||||||||||||| | || || ||| | |||||||| |||||||| || || ||
Sbjct: 189 tgaagaatatccaatggctccaccaaaggttcgttttctcacaaaaatttatcaccctaa 248
Query: 297 cattgacaag 306
||||||||||
Sbjct: 249 cattgacaag 258
>gb|AW679757.1|AW679757 WS1_31_G12.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 686
Score = 198 bits (100), Expect = 6e-049
Identities = 283/344 (82%)
Strand = Plus / Plus
Query: 148 gagaacatgcggtacttcaatgtcatgatccttggccccgcacagtcaccctatgaaggt 207
||||||||||| ||||||||||||||||||||||| || | ||||| || || || ||
Sbjct: 35 gagaacatgcgctacttcaatgtcatgatccttggaccatcgcagtcgccatacgaggga 94
Query: 208 ggagttttcaagcttgagctattcttgcctgaggaatatccaatggctgccccgaaagtt 267
|||||||||||||| ||| ||||||||||||| ||||||||||||||| | || || |||
Sbjct: 95 ggagttttcaagctcgagttattcttgcctgaagaatatccaatggctccaccaaaggtt 154
Query: 268 aggtttctcaccaaaatttaccatccgaacattgacaagcttggtaggatatgcctcgac 327
| |||||||| |||||||| || || ||||||||||||||||||||||||||||| ||
Sbjct: 155 cgttttctcacaaaaatttatcaccctaacattgacaagcttggtaggatatgccttgat 214
Query: 328 attcttaaggacaaatggagtcccgctcttcagatacgtacagttctgctcagcattcag 387
||| | |||||||| |||||||| || |||||||| || |||||| | | ||||| |||
Sbjct: 215 attttgaaggacaagtggagtcctgcccttcagattcgaacagttttattgagcatccag 274
Query: 388 gcacttctgagtgccccaaatccagatgatcctctctcagacaacattgcgaaacactgg 447
||| | || ||||| ||||| || ||||| || || | ||||| | || || ||||||
Sbjct: 275 gcattgcttagtgctccaaaccctgatgacccacttgccgacaatgtggcaaagcactgg 334
Query: 448 aaatcaaatgaagctgaagcttttgagacagcgaaggagtggac 491
|| | ||||||||||||||| | || ||||| || ||||||||
Sbjct: 335 aaggctaatgaagctgaagctgtagaaacagctaaagagtggac 378
>gb|BG464027.1|BG464027 EM1_52_G07.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 657
Score = 198 bits (100), Expect = 6e-049
Identities = 283/344 (82%)
Strand = Plus / Plus
Query: 148 gagaacatgcggtacttcaatgtcatgatccttggccccgcacagtcaccctatgaaggt 207
||||||||||| ||||||||||||||||||||||| || | ||||| || || || ||
Sbjct: 14 gagaacatgcgctacttcaatgtcatgatccttggaccatcgcagtcgccatacgaggga 73
Query: 208 ggagttttcaagcttgagctattcttgcctgaggaatatccaatggctgccccgaaagtt 267
|||||||||||||| ||| ||||||||||||| ||||||||||||||| | || || |||
Sbjct: 74 ggagttttcaagctcgagttattcttgcctgaagaatatccaatggctccaccaaaggtt 133
Query: 268 aggtttctcaccaaaatttaccatccgaacattgacaagcttggtaggatatgcctcgac 327
| |||||||| |||||||| || || ||||||||||||||||||||||||||||| ||
Sbjct: 134 cgttttctcacaaaaatttatcaccctaacattgacaagcttggtaggatatgccttgat 193
Query: 328 attcttaaggacaaatggagtcccgctcttcagatacgtacagttctgctcagcattcag 387
||| | |||||||| |||||||| || |||||||| || |||||| | | ||||| |||
Sbjct: 194 attttgaaggacaagtggagtcctgcccttcagattcgaacagttttattgagcatccag 253
Query: 388 gcacttctgagtgccccaaatccagatgatcctctctcagacaacattgcgaaacactgg 447
||| | || ||||| ||||| || ||||| || || | ||||| | || || ||||||
Sbjct: 254 gcattgcttagtgctccaaaccctgatgacccacttgccgacaatgtggcaaagcactgg 313
Query: 448 aaatcaaatgaagctgaagcttttgagacagcgaaggagtggac 491
|| | ||||||||||||||| | || ||||| || ||||||||
Sbjct: 314 aaggctaatgaagctgaagctgtagaaacagctaaagagtggac 357
>gb|CD222465.1|CD222465 CCC1_22_E06.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_22_E06_A007 3', mRNA sequence
Length = 647
Score = 198 bits (100), Expect = 6e-049
Identities = 283/344 (82%)
Strand = Plus / Plus
Query: 148 gagaacatgcggtacttcaatgtcatgatccttggccccgcacagtcaccctatgaaggt 207
||||||||||| ||||||||||||||||||||||| || | ||||| || || || ||
Sbjct: 12 gagaacatgcgctacttcaatgtcatgatccttggaccatcgcagtcgccatacgaggga 71
Query: 208 ggagttttcaagcttgagctattcttgcctgaggaatatccaatggctgccccgaaagtt 267
|||||||||||||| ||| ||||||||||||| ||||||||||||||| | || || |||
Sbjct: 72 ggagttttcaagctcgagttattcttgcctgaagaatatccaatggctccaccaaaggtt 131
Query: 268 aggtttctcaccaaaatttaccatccgaacattgacaagcttggtaggatatgcctcgac 327
| |||||||| |||||||| || || ||||||||||||||||||||||||||||| ||
Sbjct: 132 cgttttctcacaaaaatttatcaccctaacattgacaagcttggtaggatatgccttgat 191
Query: 328 attcttaaggacaaatggagtcccgctcttcagatacgtacagttctgctcagcattcag 387
||| | |||||||| |||||||| || |||||||| || |||||| | | ||||| |||
Sbjct: 192 attttgaaggacaagtggagtcctgcccttcagattcgaacagttttattgagcatccag 251
Query: 388 gcacttctgagtgccccaaatccagatgatcctctctcagacaacattgcgaaacactgg 447
||| | || ||||| ||||| || ||||| || || | ||||| | || || ||||||
Sbjct: 252 gcattgcttagtgctccaaaccctgatgacccacttgccgacaatgtggcaaagcactgg 311
Query: 448 aaatcaaatgaagctgaagcttttgagacagcgaaggagtggac 491
|| | ||||||||||||||| | || ||||| || ||||||||
Sbjct: 312 aaggctaatgaagctgaagctgtagaaacagctaaagagtggac 355
>gb|CD427858.1|CD427858 ETH1_34_G01.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_34_G01_A002 5', mRNA sequence
Length = 328
Score = 182 bits (92), Expect = 3e-044
Identities = 137/152 (90%)
Strand = Plus / Plus
Query: 55 atggccaacagcaacctcccgcgccgaatcatcaaggagacgcagcggctcctcagcgaa 114
||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||
Sbjct: 173 atggccaacagcaacctcccgcggcggatcatcaaggagacgcagcggctgctcagcgag 232
Query: 115 ccagcgccggggattagcgcgtcgccgtcggaagagaacatgcggtacttcaatgtcatg 174
||||| |||||||| ||||||||||| ||||| ||||||||||| |||||||| || |||
Sbjct: 233 ccagcaccggggatcagcgcgtcgccctcggaggagaacatgcgctacttcaacgttatg 292
Query: 175 atccttggccccgcacagtcaccctatgaagg 206
|||||||| || || ||||| |||||||||||
Sbjct: 293 atccttgggccggcgcagtcgccctatgaagg 324
>gb|CW301925.1|CW301925 104_785_11464455_116_36265_050 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11464455, DNA
sequence
Length = 664
Score = 170 bits (86), Expect = 1e-040
Identities = 98/102 (96%)
Strand = Plus / Plus
Query: 377 tcagcattcaggcacttctgagtgccccaaatccagatgatcctctctcagacaacattg 436
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 474 tcagcattcaggcacttctgagcgccccaaatccagatgatcctctctcagacaacattg 533
Query: 437 cgaaacactggaaatcaaatgaagctgaagcttttgagacag 478
||| |||||||||||| ||||||||||||||| |||||||||
Sbjct: 534 cgagacactggaaatccaatgaagctgaagctgttgagacag 575
Score = 52.0 bits (26), Expect = 8e-005
Identities = 36/38 (94%), Gaps = 1/38 (2%)
Strand = Plus / Plus
Query: 340 aaatggagtcccgctcttcagatacgtacagttctgct 377
||||||||||| | ||||||||||||||||||||||||
Sbjct: 275 aaatggagtccgg-tcttcagatacgtacagttctgct 311
Score = 52.0 bits (26), Expect = 8e-005
Identities = 39/42 (92%), Gaps = 1/42 (2%)
Strand = Plus / Plus
Query: 265 gttaggtttctcaccaaaatttaccatccgaacattgacaag 306
||||| |||||||| |||||||||||||| ||||||||||||
Sbjct: 139 gttagatttctcac-aaaatttaccatcccaacattgacaag 179
>gb|BE352961.1|BE352961 DG1_1_D02.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 449
Score = 165 bits (83), Expect = 8e-039
Identities = 170/199 (85%)
Strand = Plus / Plus
Query: 305 agcttggtaggatatgcctcgacattcttaaggacaaatggagtcccgctcttcagatac 364
|||||||||||||||||||||||||||| |||||||||||||| || || |||||||| |
Sbjct: 1 agcttggtaggatatgcctcgacattctcaaggacaaatggagcccggcacttcagattc 60
Query: 365 gtacagttctgctcagcattcaggcacttctgagtgccccaaatccagatgatcctctct 424
| || ||||| | || || ||||| || |||||||| |||||||||||||| ||||| |
Sbjct: 61 gcacggttcttttgagtatacaggctctcctgagtgcgccaaatccagatgaccctcttt 120
Query: 425 cagacaacattgcgaaacactggaaatcaaatgaagctgaagcttttgagacagcgaagg 484
| || |||||||| || ||||||||| | ||||| | |||||| |||| ||||| ||||
Sbjct: 121 ccgataacattgcaaagcactggaaagccaatgaggtagaagctgttgaaacagccaagg 180
Query: 485 agtggactcgcctgtatgc 503
|||||||||||||||||||
Sbjct: 181 agtggactcgcctgtatgc 199
>gb|BG558946.1|BG558946 RHIZ2_52_F09.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 603
Score = 159 bits (80), Expect = 5e-037
Identities = 233/284 (82%)
Strand = Plus / Plus
Query: 208 ggagttttcaagcttgagctattcttgcctgaggaatatccaatggctgccccgaaagtt 267
|||||||||||||| ||| ||||||||||||| ||||||||||||||| | || || |||
Sbjct: 12 ggagttttcaagctcgagttattcttgcctgaagaatatccaatggctccaccaaaggtt 71
Query: 268 aggtttctcaccaaaatttaccatccgaacattgacaagcttggtaggatatgcctcgac 327
| |||||||| |||||||| || || ||||||||||||||||||||||||||||| ||
Sbjct: 72 cgttttctcacaaaaatttatcaccctaacattgacaagcttggtaggatatgccttgat 131
Query: 328 attcttaaggacaaatggagtcccgctcttcagatacgtacagttctgctcagcattcag 387
||| | |||||||| |||||||| || |||||||| || |||||| | | ||||| |||
Sbjct: 132 attttgaaggacaagtggagtcctgcccttcagattcgaacagttttattgagcatccag 191
Query: 388 gcacttctgagtgccccaaatccagatgatcctctctcagacaacattgcgaaacactgg 447
||| | || ||||| ||||| || ||||| || || | ||||| | || || ||||||
Sbjct: 192 gcattgcttagtgctccaaaccctgatgacccacttgccgacaatgtggcaaagcactgg 251
Query: 448 aaatcaaatgaagctgaagcttttgagacagcgaaggagtggac 491
|| | ||||||||||||||| | || ||||| || ||||||||
Sbjct: 252 aaggctaatgaagctgaagctgtagaaacagctaaagagtggac 295
>gb|CW301926.1|CW301926 104_785_11464455_148_36266_050 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11464455, DNA
sequence
Length = 759
Score = 157 bits (79), Expect = 2e-036
Identities = 133/151 (88%), Gaps = 5/151 (3%)
Strand = Plus / Minus
Query: 476 cagcgaaggagtggactcgcctgtatgcaagtggggcattgtaaccaagtgttgtttcag 535
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct: 635 cagcgaaggagtggactcgcctgtatgcaagtggggcatgacaaccaagtgttatttcag 576
Query: 536 atgtgatgttataacatttccatagtttggggccgactgaatacccctcttgcttgatga 595
|||| || |||| ||||||||||||| ||||| |||||||||| ||||||||||||
Sbjct: 575 atgtaat-----aacacttccatagtttggagccgattgaataccccgcttgcttgatga 521
Query: 596 gagcaaatttgtgaaatgttgcaatggggtc 626
|||||||| ||| || ||||||||||||||
Sbjct: 520 gagcaaatctgttgaacgttgcaatggggtc 490
Score = 115 bits (58), Expect = 7e-024
Identities = 82/90 (91%)
Strand = Plus / Minus
Query: 653 tacttgtggctgtacctccattcgctgcagtgcccgtgagcatcaaagcaggtattcctt 712
|||||||||||||| |||||||||||||||||||||| ||||||||||||||| || |||
Sbjct: 460 tacttgtggctgtagctccattcgctgcagtgcccgtaagcatcaaagcaggtgttgctt 401
Query: 713 tgtatacccctatctgaccatcagttgcat 742
||| | ||||||||||||||||||||||
Sbjct: 400 tgtctgttcctatctgaccatcagttgcat 371
Score = 46.1 bits (23), Expect = 0.005
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 448 aaatcaaatgaagctgaagcttttgagacag 478
||||| ||||||||||||||| |||||||||
Sbjct: 759 aaatccaatgaagctgaagctgttgagacag 729
Score = 42.1 bits (21), Expect = 0.080
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 758 tgctctgaggattcagatttatgctgccggaac 790
|||||||||| |||||| | |||||||||||||
Sbjct: 351 tgctctgaggtttcagaatcatgctgccggaac 319
>gb|BE593616.1|BE593616 WS1_98_H01.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 217
Score = 151 bits (76), Expect = 1e-034
Identities = 169/200 (84%)
Strand = Plus / Plus
Query: 148 gagaacatgcggtacttcaatgtcatgatccttggccccgcacagtcaccctatgaaggt 207
||||||||||| ||||||||||||||||||||||| || | || || || || | ||
Sbjct: 15 gagaacatgcgctacttcaatgtcatgatccttggaccatcgcactcgccataccaggga 74
Query: 208 ggagttttcaagcttgagctattcttgcctgaggaatatccaatggctgccccgaaagtt 267
|||||||||||||| ||| ||||||||||||| ||||||||||||||| | || || |||
Sbjct: 75 ggagttttcaagctcgagttattcttgcctgaagaatatccaatggctccaccaaaggtt 134
Query: 268 aggtttctcaccaaaatttaccatccgaacattgacaagcttggtaggatatgcctcgac 327
| |||||||| ||||| || || || ||||||||||||||||||||||||||||| ||
Sbjct: 135 cgttttctcacaaaaatctatcaccctaacattgacaagcttggtaggatatgccttgat 194
Query: 328 attcttaaggacaaatggag 347
||| | |||||||| |||||
Sbjct: 195 attttgaaggacaagtggag 214
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 186,559
Number of Sequences: 832831
Number of extensions: 186559
Number of successful extensions: 51196
Number of sequences better than 0.5: 67
Number of HSP's better than 0.5 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 51090
Number of HSP's gapped (non-prelim): 92
length of query: 825
length of database: 491,359,669
effective HSP length: 20
effective length of query: 805
effective length of database: 474,703,049
effective search space: 382135954445
effective search space used: 382135954445
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)