BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3438088.2.1
(615 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW159691.1|CW159691 104_566_11149490_148_36423_015 Sorgh... 478 e-133
gb|CW163891.1|CW163891 104_571_11151698_116_36456_003 Sorgh... 478 e-133
gb|CW212992.1|CW212992 104_644_11191313_116_37026_073 Sorgh... 478 e-133
gb|CW407797.1|CW407797 fsbb001f101g18f0 Sorghum methylation... 478 e-133
gb|CW407798.1|CW407798 fsbb001f101g18k0 Sorghum methylation... 478 e-133
gb|CW212993.1|CW212993 104_644_11191313_148_37027_073 Sorgh... 244 8e-063
gb|CD220687.1|CD220687 CCC1_68_E02.g1_A007 Callus culture/c... 147 1e-033
gb|CW394211.1|CW394211 fsbb001f081l01f0 Sorghum methylation... 119 3e-025
gb|CW022238.1|CW022238 104_161_10431724_1_30006 Sorghum met... 60 3e-007
gb|CW022239.1|CW022239 104_161_10431724_5_30007 Sorghum met... 60 3e-007
gb|CW164356.1|CW164356 104_572_11151945_148_36462_041 Sorgh... 60 3e-007
gb|CW236951.1|CW236951 104_693_11215895_116_37512_094 Sorgh... 60 3e-007
gb|CW236952.1|CW236952 104_693_11215895_148_37519_094 Sorgh... 60 3e-007
gb|CW388822.1|CW388822 fsbb001f073l23f0 Sorghum methylation... 60 3e-007
gb|CW388823.1|CW388823 fsbb001f073l23k0 Sorghum methylation... 60 3e-007
gb|BE353094.1|BE353094 DG1_4_F07.g1_A002 Dark Grown 1 (DG1)... 60 3e-007
gb|BE357367.1|BE357367 DG1_148_A07.g1_A002 Dark Grown 1 (DG... 60 3e-007
gb|CD205740.1|CD205740 HS1_18_E08.b1_A012 Heat-shocked seed... 60 3e-007
gb|CD220430.1|CD220430 CCC1_67_H06.b1_A007 Callus culture/c... 60 3e-007
gb|CF071078.1|CF071078 FE1_15_D12.b1_A002 Iron-deficient se... 60 3e-007
gb|CX616301.1|CX616301 GABR1_27_D03.b1_A002 GA- or brassino... 60 3e-007
gb|CX617846.1|CX617846 GABR1_36_D11.b1_A002 GA- or brassino... 60 3e-007
gb|CX619537.1|CX619537 GABR1_46_D02.b1_A002 GA- or brassino... 60 3e-007
gb|CW484465.1|CW484465 fsbb001f246j24f0 Sorghum methylation... 56 4e-006
gb|CX611325.1|CX611325 ANR1_24_B05.b1_A002 Anaerobic roots ... 52 6e-005
gb|CX613114.1|CX613114 GABR1_6_G11.b1_A002 GA- or brassinol... 52 6e-005
gb|CD220536.1|CD220536 CCC1_67_H06.g1_A007 Callus culture/c... 46 0.004
gb|CW171034.1|CW171034 104_581_11155527_148_36522_054 Sorgh... 44 0.015
gb|BE125743.1|BE125743 DG1_55_D08.b1_A002 Dark Grown 1 (DG1... 44 0.015
gb|BF481805.1|BF481805 FM1_20_E12.b1_A003 Floral-Induced Me... 44 0.015
gb|BG739401.1|BG739401 EM1_82_E02.g1_A002 Embryo 1 (EM1) So... 44 0.015
gb|CD204726.1|CD204726 HS1_9_C04.g1_A012 Heat-shocked seedl... 44 0.015
gb|CD211499.1|CD211499 HS1_60_G12.g1_A012 Heat-shocked seed... 44 0.015
gb|CD230813.1|CD230813 SS1_9_E11.g1_A012 Salt-stressed seed... 44 0.015
gb|CN140708.1|CN140708 OX1_46_A01.g1_A002 Oxidatively-stres... 44 0.015
gb|CN140709.1|CN140709 OX1_46_A02.g1_A002 Oxidatively-stres... 44 0.015
gb|CX617087.1|CX617087 GABR1_31_D05.g1_A002 GA- or brassino... 44 0.015
gb|BZ329573.1|BZ329573 hv86g02.g1 WGS-SbicolorF (JM107 adap... 42 0.059
gb|CL156055.1|CL156055 104_342_10782588_116_31474_300 Sorgh... 42 0.059
gb|CW039001.1|CW039001 104_271_10505241_114_30387 Sorghum m... 42 0.059
gb|CW057286.1|CW057286 104_299_10518137_115_30171 Sorghum m... 42 0.059
gb|CW155481.1|CW155481 104_558_11146163_116_36367_048 Sorgh... 42 0.059
gb|CW241151.1|CW241151 104_700_11218609_148_37540_011 Sorgh... 42 0.059
gb|CW248313.1|CW248313 104_709_11222232_116_35030_086 Sorgh... 42 0.059
gb|CW248314.1|CW248314 104_709_11222232_148_35026_086 Sorgh... 42 0.059
gb|CW274363.1|CW274363 104_747_11404387_148_35370_076 Sorgh... 42 0.059
gb|CW312981.1|CW312981 104_803_11471048_148_35789_030 Sorgh... 42 0.059
gb|CW355226.1|CW355226 fsbb001f019m09f0 Sorghum methylation... 42 0.059
gb|CW406606.1|CW406606 fsbb001f099l05f0 Sorghum methylation... 42 0.059
gb|CW406607.1|CW406607 fsbb001f099l05k0 Sorghum methylation... 42 0.059
gb|CW421237.1|CW421237 fsbb001f128p09f0 Sorghum methylation... 42 0.059
gb|CW495694.1|CW495694 fsbb001f287j06k0 Sorghum methylation... 42 0.059
gb|BF657579.1|BF657579 OV2_23_H09.b1_A002 Ovary 2 (OV2) Sor... 42 0.059
gb|BG054180.1|BG054180 OV2_2_C06.b1_A002 Ovary 2 (OV2) Sorg... 42 0.059
gb|BG948770.1|BG948770 LG1_266_A03.b1_A002 Light Grown 1 (L... 42 0.059
gb|CD224870.1|CD224870 CCC1_36_B01.g1_A007 Callus culture/c... 42 0.059
gb|BZ348883.1|BZ348883 hp62d09.g2 WGS-SbicolorF (JM107 adap... 40 0.23
gb|BZ350763.1|BZ350763 ht60d09.g1 WGS-SbicolorF (JM107 adap... 40 0.23
gb|CL153805.1|CL153805 104_338_10780968_116_31370_216 Sorgh... 40 0.23
gb|CL169400.1|CL169400 104_368_10812599_116_31809_071 Sorgh... 40 0.23
gb|CL172855.1|CL172855 104_375_10890473_148_31796_377 Sorgh... 40 0.23
gb|CW041400.1|CW041400 104_274_10506534_114_30470 Sorghum m... 40 0.23
gb|CW041401.1|CW041401 104_274_10506534_116_30484 Sorghum m... 40 0.23
gb|CW050007.1|CW050007 104_289_10514394_114_30202 Sorghum m... 40 0.23
gb|CW053231.1|CW053231 104_293_10515847_115_30191 Sorghum m... 40 0.23
gb|CW187027.1|CW187027 104_605_11166876_148_36715_044 Sorgh... 40 0.23
gb|CW213889.1|CW213889 104_645_11191803_148_37039_006 Sorgh... 40 0.23
gb|CW216644.1|CW216644 104_649_11195227_116_37125_072 Sorgh... 40 0.23
gb|CW223805.1|CW223805 104_659_11203113_148_37186_033 Sorgh... 40 0.23
gb|CW262377.1|CW262377 104_729_11230026_148_35206_065 Sorgh... 40 0.23
gb|CW269890.1|CW269890 104_741_11402081_116_35322_075 Sorgh... 40 0.23
gb|CW309896.1|CW309896 104_798_11469433_148_35741_001 Sorgh... 40 0.23
gb|CW320979.1|CW320979 104_814_11475299_148_35938_046 Sorgh... 40 0.23
gb|CW338675.1|CW338675 104_839_11484870_116_36133_029 Sorgh... 40 0.23
gb|CW338676.1|CW338676 104_839_11484870_148_36132_029 Sorgh... 40 0.23
gb|CW345582.1|CW345582 104_848_11488570_148_36207_035 Sorgh... 40 0.23
gb|CW361265.1|CW361265 fsbb001f029l15f0 Sorghum methylation... 40 0.23
gb|CW382458.1|CW382458 fsbb001f064g19k0 Sorghum methylation... 40 0.23
gb|CW386066.1|CW386066 fsbb001f069m16f0 Sorghum methylation... 40 0.23
gb|CW397245.1|CW397245 fsbb001f086b07f0 Sorghum methylation... 40 0.23
gb|CW397745.1|CW397745 fsbb001f086o05f0 Sorghum methylation... 40 0.23
gb|CW397746.1|CW397746 fsbb001f086o05k0 Sorghum methylation... 40 0.23
gb|CW401034.1|CW401034 fsbb001f091k07k0 Sorghum methylation... 40 0.23
gb|CW416308.1|CW416308 fsbb001f116m19f0 Sorghum methylation... 40 0.23
gb|CW422604.1|CW422604 fsbb001f131p16k0 Sorghum methylation... 40 0.23
gb|CW427763.1|CW427763 fsbb001f139o17k0 Sorghum methylation... 40 0.23
gb|CW441195.1|CW441195 fsbb001f160d17k0 Sorghum methylation... 40 0.23
gb|CW451021.1|CW451021 fsbb001f189o18k0 Sorghum methylation... 40 0.23
gb|CW466309.1|CW466309 fsbb001f217h24k0 Sorghum methylation... 40 0.23
gb|CD230414.1|CD230414 SS1_43_F05.g1_A012 Salt-stressed see... 40 0.23
gb|DN552367.1|DN552367 pSPR-RT-MR-H1_D10r_C358 pSPR Sorghum... 40 0.23
>gb|CW159691.1|CW159691 104_566_11149490_148_36423_015 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11149490, DNA
sequence
Length = 659
Score = 478 bits (241), Expect = e-133
Identities = 345/379 (91%), Gaps = 3/379 (0%)
Strand = Plus / Plus
Query: 237 ggtttccatggagccggcggcggcggaggcgaagggaacatgggcggtactgcagagaac 296
||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 45 ggtttccatggggccggtggcggcggaggggaagggaacatgggcggtactgcagagaac 104
Query: 297 atggtgttcttgtccaccccgccgtggccgtcacccgacaaagctaccaatgcggcgact 356
|| | ||||||||||||||| ||||| ||||| ||||||||||||||||| ||||||
Sbjct: 105 atagcattcttgtccaccccg---tggccttcaccagacaaagctaccaatgctgcgact 161
Query: 357 agaccagcgttgcccgccagcgttgcttcagtgtagttgtagttcctgcgggcatctttg 416
|||||||| ||||| |||| ||||||||||||||||| || ||| ||||||||||||||
Sbjct: 162 agaccagcattgcctaccagtgttgcttcagtgtagttataattcttgcgggcatctttg 221
Query: 417 aacccgtcatggcggtcggggccagcaaccatggcacctgctatggtattagggtttggc 476
|||| ||||||||| || ||||||||||||||||| ||| ||||| ||||||||||||||
Sbjct: 222 aacctgtcatggcgatcagggccagcaaccatggcccctactatgatattagggtttggc 281
Query: 477 ttcttggcgtccctccacttccaccctcctttgcagccatagtgaacaccgttcttaggg 536
||||||| ||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct: 282 ttcttggtgtccctccacttccaccctcctttgcaaccatagtgaacaccattcttaggg 341
Query: 537 atcgaggcgccccggtggtgaacatgcctggggtaacgctttccgaacccaaccacgtag 596
|| |||||||||||||||||||||||| |||||||| | ||||| ||||||||||| |||
Sbjct: 342 attgaggcgccccggtggtgaacatgcttggggtaatggtttccaaacccaaccacatag 401
Query: 597 ctcatcttcaaaggattct 615
|||||||||||||||||||
Sbjct: 402 ctcatcttcaaaggattct 420
Score = 42.1 bits (21), Expect = 0.059
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 182 gcagtatacaaaagaatcagatacc 206
|||||||||||||||||| ||||||
Sbjct: 8 gcagtatacaaaagaatctgatacc 32
>gb|CW163891.1|CW163891 104_571_11151698_116_36456_003 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11151698, DNA
sequence
Length = 692
Score = 478 bits (241), Expect = e-133
Identities = 345/379 (91%), Gaps = 3/379 (0%)
Strand = Plus / Plus
Query: 237 ggtttccatggagccggcggcggcggaggcgaagggaacatgggcggtactgcagagaac 296
||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 2 ggtttccatggggccggtggcggcggaggggaagggaacatgggcggtactgcagagaac 61
Query: 297 atggtgttcttgtccaccccgccgtggccgtcacccgacaaagctaccaatgcggcgact 356
|| | ||||||||||||||| ||||| ||||| ||||||||||||||||| ||||||
Sbjct: 62 atagcattcttgtccaccccg---tggccttcaccagacaaagctaccaatgctgcgact 118
Query: 357 agaccagcgttgcccgccagcgttgcttcagtgtagttgtagttcctgcgggcatctttg 416
|||||||| ||||| |||| ||||||||||||||||| || ||| ||||||||||||||
Sbjct: 119 agaccagcattgcctaccagtgttgcttcagtgtagttataattcttgcgggcatctttg 178
Query: 417 aacccgtcatggcggtcggggccagcaaccatggcacctgctatggtattagggtttggc 476
|||| ||||||||| || ||||||||||||||||| ||| ||||| ||||||||||||||
Sbjct: 179 aacctgtcatggcgatcagggccagcaaccatggcccctactatgatattagggtttggc 238
Query: 477 ttcttggcgtccctccacttccaccctcctttgcagccatagtgaacaccgttcttaggg 536
||||||| ||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct: 239 ttcttggtgtccctccacttccaccctcctttgcaaccatagtgaacaccattcttaggg 298
Query: 537 atcgaggcgccccggtggtgaacatgcctggggtaacgctttccgaacccaaccacgtag 596
|| |||||||||||||||||||||||| |||||||| | ||||| ||||||||||| |||
Sbjct: 299 attgaggcgccccggtggtgaacatgcttggggtaatggtttccaaacccaaccacatag 358
Query: 597 ctcatcttcaaaggattct 615
|||||||||||||||||||
Sbjct: 359 ctcatcttcaaaggattct 377
>gb|CW212992.1|CW212992 104_644_11191313_116_37026_073 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11191313, DNA
sequence
Length = 633
Score = 478 bits (241), Expect = e-133
Identities = 345/379 (91%), Gaps = 3/379 (0%)
Strand = Plus / Minus
Query: 237 ggtttccatggagccggcggcggcggaggcgaagggaacatgggcggtactgcagagaac 296
||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 424 ggtttccatggggccggtggcggcggaggggaagggaacatgggcggtactgcagagaac 365
Query: 297 atggtgttcttgtccaccccgccgtggccgtcacccgacaaagctaccaatgcggcgact 356
|| | ||||||||||||||| ||||| ||||| ||||||||||||||||| ||||||
Sbjct: 364 atagcattcttgtccaccccg---tggccttcaccagacaaagctaccaatgctgcgact 308
Query: 357 agaccagcgttgcccgccagcgttgcttcagtgtagttgtagttcctgcgggcatctttg 416
|||||||| ||||| |||| ||||||||||||||||| || ||| ||||||||||||||
Sbjct: 307 agaccagcattgcctaccagtgttgcttcagtgtagttataattcttgcgggcatctttg 248
Query: 417 aacccgtcatggcggtcggggccagcaaccatggcacctgctatggtattagggtttggc 476
|||| ||||||||| || ||||||||||||||||| ||| ||||| ||||||||||||||
Sbjct: 247 aacctgtcatggcgatcagggccagcaaccatggcccctactatgatattagggtttggc 188
Query: 477 ttcttggcgtccctccacttccaccctcctttgcagccatagtgaacaccgttcttaggg 536
||||||| ||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct: 187 ttcttggtgtccctccacttccaccctcctttgcaaccatagtgaacaccattcttaggg 128
Query: 537 atcgaggcgccccggtggtgaacatgcctggggtaacgctttccgaacccaaccacgtag 596
|| |||||||||||||||||||||||| |||||||| | ||||| ||||||||||| |||
Sbjct: 127 attgaggcgccccggtggtgaacatgcttggggtaatggtttccaaacccaaccacatag 68
Query: 597 ctcatcttcaaaggattct 615
|||||||||||||||||||
Sbjct: 67 ctcatcttcaaaggattct 49
Score = 42.1 bits (21), Expect = 0.059
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 182 gcagtatacaaaagaatcagatacc 206
|||||||||||||||||| ||||||
Sbjct: 461 gcagtatacaaaagaatctgatacc 437
Score = 40.1 bits (20), Expect = 0.23
Identities = 57/68 (83%), Gaps = 1/68 (1%)
Strand = Plus / Minus
Query: 101 gctacatactgttagatctccatgattgtgatggtagcagtacggcgagagggaacacta 160
||||||| ||| ||| ||||| ||| ||||||||| |||| |||||||| |||||||
Sbjct: 530 gctacatcttgtcagaactccacgatagtgatggtactagtaaggcgagagc-aacacta 472
Query: 161 atctaaat 168
||||||||
Sbjct: 471 atctaaat 464
>gb|CW407797.1|CW407797 fsbb001f101g18f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f101g18, DNA
sequence
Length = 731
Score = 478 bits (241), Expect = e-133
Identities = 345/379 (91%), Gaps = 3/379 (0%)
Strand = Plus / Minus
Query: 237 ggtttccatggagccggcggcggcggaggcgaagggaacatgggcggtactgcagagaac 296
||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 613 ggtttccatggggccggtggcggcggaggggaagggaacatgggcggtactgcagagaac 554
Query: 297 atggtgttcttgtccaccccgccgtggccgtcacccgacaaagctaccaatgcggcgact 356
|| | ||||||||||||||| ||||| ||||| ||||||||||||||||| ||||||
Sbjct: 553 atagcattcttgtccaccccg---tggccttcaccagacaaagctaccaatgctgcgact 497
Query: 357 agaccagcgttgcccgccagcgttgcttcagtgtagttgtagttcctgcgggcatctttg 416
|||||||| ||||| |||| ||||||||||||||||| || ||| ||||||||||||||
Sbjct: 496 agaccagcattgcctaccagtgttgcttcagtgtagttataattcttgcgggcatctttg 437
Query: 417 aacccgtcatggcggtcggggccagcaaccatggcacctgctatggtattagggtttggc 476
|||| ||||||||| || ||||||||||||||||| ||| ||||| ||||||||||||||
Sbjct: 436 aacctgtcatggcgatcagggccagcaaccatggcccctactatgatattagggtttggc 377
Query: 477 ttcttggcgtccctccacttccaccctcctttgcagccatagtgaacaccgttcttaggg 536
||||||| ||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct: 376 ttcttggtgtccctccacttccaccctcctttgcaaccatagtgaacaccattcttaggg 317
Query: 537 atcgaggcgccccggtggtgaacatgcctggggtaacgctttccgaacccaaccacgtag 596
|| |||||||||||||||||||||||| |||||||| | ||||| ||||||||||| |||
Sbjct: 316 attgaggcgccccggtggtgaacatgcttggggtaatggtttccaaacccaaccacatag 257
Query: 597 ctcatcttcaaaggattct 615
|||||||||||||||||||
Sbjct: 256 ctcatcttcaaaggattct 238
Score = 42.1 bits (21), Expect = 0.059
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 182 gcagtatacaaaagaatcagatacc 206
|||||||||||||||||| ||||||
Sbjct: 650 gcagtatacaaaagaatctgatacc 626
Score = 40.1 bits (20), Expect = 0.23
Identities = 57/68 (83%), Gaps = 1/68 (1%)
Strand = Plus / Minus
Query: 101 gctacatactgttagatctccatgattgtgatggtagcagtacggcgagagggaacacta 160
||||||| ||| ||| ||||| ||| ||||||||| |||| |||||||| |||||||
Sbjct: 719 gctacatcttgtcagaactccacgatagtgatggtactagtaaggcgagagc-aacacta 661
Query: 161 atctaaat 168
||||||||
Sbjct: 660 atctaaat 653
>gb|CW407798.1|CW407798 fsbb001f101g18k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f101g18, DNA
sequence
Length = 838
Score = 478 bits (241), Expect = e-133
Identities = 345/379 (91%), Gaps = 3/379 (0%)
Strand = Plus / Plus
Query: 237 ggtttccatggagccggcggcggcggaggcgaagggaacatgggcggtactgcagagaac 296
||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 365 ggtttccatggggccggtggcggcggaggggaagggaacatgggcggtactgcagagaac 424
Query: 297 atggtgttcttgtccaccccgccgtggccgtcacccgacaaagctaccaatgcggcgact 356
|| | ||||||||||||||| ||||| ||||| ||||||||||||||||| ||||||
Sbjct: 425 atagcattcttgtccaccccg---tggccttcaccagacaaagctaccaatgctgcgact 481
Query: 357 agaccagcgttgcccgccagcgttgcttcagtgtagttgtagttcctgcgggcatctttg 416
|||||||| ||||| |||| ||||||||||||||||| || ||| ||||||||||||||
Sbjct: 482 agaccagcattgcctaccagtgttgcttcagtgtagttataattcttgcgggcatctttg 541
Query: 417 aacccgtcatggcggtcggggccagcaaccatggcacctgctatggtattagggtttggc 476
|||| ||||||||| || ||||||||||||||||| ||| ||||| ||||||||||||||
Sbjct: 542 aacctgtcatggcgatcagggccagcaaccatggcccctactatgatattagggtttggc 601
Query: 477 ttcttggcgtccctccacttccaccctcctttgcagccatagtgaacaccgttcttaggg 536
||||||| ||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct: 602 ttcttggtgtccctccacttccaccctcctttgcaaccatagtgaacaccattcttaggg 661
Query: 537 atcgaggcgccccggtggtgaacatgcctggggtaacgctttccgaacccaaccacgtag 596
|| |||||||||||||||||||||||| |||||||| | ||||| ||||||||||| |||
Sbjct: 662 attgaggcgccccggtggtgaacatgcttggggtaatggtttccaaacccaaccacatag 721
Query: 597 ctcatcttcaaaggattct 615
|||||||||||||||||||
Sbjct: 722 ctcatcttcaaaggattct 740
Score = 42.1 bits (21), Expect = 0.059
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 182 gcagtatacaaaagaatcagatacc 206
|||||||||||||||||| ||||||
Sbjct: 328 gcagtatacaaaagaatctgatacc 352
Score = 40.1 bits (20), Expect = 0.23
Identities = 57/68 (83%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 101 gctacatactgttagatctccatgattgtgatggtagcagtacggcgagagggaacacta 160
||||||| ||| ||| ||||| ||| ||||||||| |||| |||||||| |||||||
Sbjct: 259 gctacatcttgtcagaactccacgatagtgatggtactagtaaggcgagagc-aacacta 317
Query: 161 atctaaat 168
||||||||
Sbjct: 318 atctaaat 325
>gb|CW212993.1|CW212993 104_644_11191313_148_37027_073 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11191313, DNA
sequence
Length = 718
Score = 244 bits (123), Expect = 8e-063
Identities = 200/225 (88%), Gaps = 3/225 (1%)
Strand = Plus / Plus
Query: 237 ggtttccatggagccggcggcggcggaggcgaagggaacatgggcggtactgcagagaac 296
||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 497 ggtttccatggggccggtggcggcggaggggaagggaacatgggcggtactgcagagaac 556
Query: 297 atggtgttcttgtccaccccgccgtggccgtcacccgacaaagctaccaatgcggcgact 356
|| | ||||||||||||||| ||||| ||||| ||||||||||||||||| ||||||
Sbjct: 557 atagcattcttgtccaccccg---tggccttcaccagacaaagctaccaatgctgcgact 613
Query: 357 agaccagcgttgcccgccagcgttgcttcagtgtagttgtagttcctgcgggcatctttg 416
|||||||| ||||| |||| ||||||||||||||||| || ||| ||||||||||||||
Sbjct: 614 agaccagcattgcctaccagtgttgcttcagtgtagttataattcttgcgggcatctttg 673
Query: 417 aacccgtcatggcggtcggggccagcaaccatggcacctgctatg 461
|| | ||||||||| || ||||||||||||||||| ||| |||||
Sbjct: 674 aaactgtcatggcgatcagggccagcaaccatggcccctactatg 718
Score = 42.1 bits (21), Expect = 0.059
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 182 gcagtatacaaaagaatcagatacc 206
|||||||||||||||||| ||||||
Sbjct: 460 gcagtatacaaaagaatctgatacc 484
Score = 40.1 bits (20), Expect = 0.23
Identities = 57/68 (83%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 101 gctacatactgttagatctccatgattgtgatggtagcagtacggcgagagggaacacta 160
||||||| ||| ||| ||||| ||| ||||||||| |||| |||||||| |||||||
Sbjct: 391 gctacatcttgtcagaactccacgatagtgatggtactagtaaggcgagagc-aacacta 449
Query: 161 atctaaat 168
||||||||
Sbjct: 450 atctaaat 457
>gb|CD220687.1|CD220687 CCC1_68_E02.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_68_E02_A007 5', mRNA sequence
Length = 606
Score = 147 bits (74), Expect = 1e-033
Identities = 95/102 (93%)
Strand = Plus / Minus
Query: 514 catagtgaacaccgttcttagggatcgaggcgccccggtggtgaacatgcctggggtaac 573
||||||||||||| ||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct: 606 catagtgaacaccattcttagggattgaggcgccccggtggtgaacatgcttggggtaat 547
Query: 574 gctttccgaacccaaccacgtagctcatcttcaaaggattct 615
| ||||| ||||||||||| ||||||||||||||||||||||
Sbjct: 546 ggtttccaaacccaaccacatagctcatcttcaaaggattct 505
>gb|CW394211.1|CW394211 fsbb001f081l01f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f081l01, DNA
sequence
Length = 239
Score = 119 bits (60), Expect = 3e-025
Identities = 116/134 (86%), Gaps = 3/134 (2%)
Strand = Plus / Plus
Query: 237 ggtttccatggagccggcggcggcggaggcgaagggaacatgggcggtactgcagagaac 296
||||||||||| ||||| ||||||||||| || |||||||||||||||||| ||| |||
Sbjct: 99 ggtttccatggggccggtggcggcggagggtaatggaacatgggcggtactggagacaac 158
Query: 297 atggtgttcttgtccaccccgccgtggccgtcacccgacaaagctaccaatgcggcgact 356
|| ||||||||||||||| ||||| ||||| ||||||||||||||||| ||||||
Sbjct: 159 ataccattcttgtccaccccg---tggccttcaccagacaaagctaccaatgctgcgact 215
Query: 357 agaccagcgttgcc 370
| ||||||||||||
Sbjct: 216 acaccagcgttgcc 229
Score = 42.1 bits (21), Expect = 0.059
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 182 gcagtatacaaaagaatcagatacc 206
|||||||||||||||||| ||||||
Sbjct: 62 gcagtatacaaaagaatctgatacc 86
>gb|CW022238.1|CW022238 104_161_10431724_1_30006 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10431724, DNA
sequence
Length = 702
Score = 60.0 bits (30), Expect = 3e-007
Identities = 66/78 (84%)
Strand = Plus / Minus
Query: 233 tcacggtttccatggagccggcggcggcggaggcgaagggaacatgggcggtactgcaga 292
|||||| ||||||| | |||||||||||| | | ||||||||| ||||| || || ||
Sbjct: 445 tcacggcttccatgacgacggcggcggcggcgcggcagggaacattggcggcacggcgga 386
Query: 293 gaacatggtgttcttgtc 310
||||||||||||||||||
Sbjct: 385 gaacatggtgttcttgtc 368
Score = 46.1 bits (23), Expect = 0.004
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 579 ccgaacccaaccacgtagctcatcttc 605
||||| |||||||||||||||||||||
Sbjct: 87 ccgaaaccaaccacgtagctcatcttc 61
>gb|CW022239.1|CW022239 104_161_10431724_5_30007 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10431724, DNA
sequence
Length = 539
Score = 60.0 bits (30), Expect = 3e-007
Identities = 66/78 (84%)
Strand = Plus / Plus
Query: 233 tcacggtttccatggagccggcggcggcggaggcgaagggaacatgggcggtactgcaga 292
|||||| ||||||| | |||||||||||| | | ||||||||| ||||| || || ||
Sbjct: 277 tcacggcttccatgacgacggcggcggcggcgcggcagggaacattggcggcacggcgga 336
Query: 293 gaacatggtgttcttgtc 310
||||||||||||||||||
Sbjct: 337 gaacatggtgttcttgtc 354
>gb|CW164356.1|CW164356 104_572_11151945_148_36462_041 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11151945, DNA
sequence
Length = 735
Score = 60.0 bits (30), Expect = 3e-007
Identities = 66/78 (84%)
Strand = Plus / Plus
Query: 233 tcacggtttccatggagccggcggcggcggaggcgaagggaacatgggcggtactgcaga 292
|||||| ||||||| | |||||||||||| | | ||||||||| ||||| || || ||
Sbjct: 190 tcacggcttccatgacgacggcggcggcggcgcggcagggaacattggcggcacggcgga 249
Query: 293 gaacatggtgttcttgtc 310
||||||||||||||||||
Sbjct: 250 gaacatggtgttcttgtc 267
Score = 46.1 bits (23), Expect = 0.004
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 579 ccgaacccaaccacgtagctcatcttc 605
||||| |||||||||||||||||||||
Sbjct: 548 ccgaaaccaaccacgtagctcatcttc 574
>gb|CW236951.1|CW236951 104_693_11215895_116_37512_094 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11215895, DNA
sequence
Length = 706
Score = 60.0 bits (30), Expect = 3e-007
Identities = 66/78 (84%)
Strand = Plus / Plus
Query: 233 tcacggtttccatggagccggcggcggcggaggcgaagggaacatgggcggtactgcaga 292
|||||| ||||||| | |||||||||||| | | ||||||||| ||||| || || ||
Sbjct: 518 tcacggcttccatgacgacggcggcggcggcgcggcagggaacattggcggcacggcgga 577
Query: 293 gaacatggtgttcttgtc 310
||||||||||||||||||
Sbjct: 578 gaacatggtgttcttgtc 595
>gb|CW236952.1|CW236952 104_693_11215895_148_37519_094 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11215895, DNA
sequence
Length = 667
Score = 60.0 bits (30), Expect = 3e-007
Identities = 66/78 (84%)
Strand = Plus / Minus
Query: 233 tcacggtttccatggagccggcggcggcggaggcgaagggaacatgggcggtactgcaga 292
|||||| ||||||| | |||||||||||| | | ||||||||| ||||| || || ||
Sbjct: 442 tcacggcttccatgacgacggcggcggcggcgcggcagggaacattggcggcacggcgga 383
Query: 293 gaacatggtgttcttgtc 310
||||||||||||||||||
Sbjct: 382 gaacatggtgttcttgtc 365
Score = 46.1 bits (23), Expect = 0.004
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 579 ccgaacccaaccacgtagctcatcttc 605
||||| |||||||||||||||||||||
Sbjct: 84 ccgaaaccaaccacgtagctcatcttc 58
>gb|CW388822.1|CW388822 fsbb001f073l23f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f073l23, DNA
sequence
Length = 581
Score = 60.0 bits (30), Expect = 3e-007
Identities = 66/78 (84%)
Strand = Plus / Minus
Query: 233 tcacggtttccatggagccggcggcggcggaggcgaagggaacatgggcggtactgcaga 292
|||||| ||||||| | |||||||||||| | | ||||||||| ||||| || || ||
Sbjct: 477 tcacggcttccatgacgacggcggcggcggcgcggcagggaacattggcggcacggcgga 418
Query: 293 gaacatggtgttcttgtc 310
||||||||||||||||||
Sbjct: 417 gaacatggtgttcttgtc 400
Score = 46.1 bits (23), Expect = 0.004
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 579 ccgaacccaaccacgtagctcatcttc 605
||||| |||||||||||||||||||||
Sbjct: 119 ccgaaaccaaccacgtagctcatcttc 93
>gb|CW388823.1|CW388823 fsbb001f073l23k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f073l23, DNA
sequence
Length = 553
Score = 60.0 bits (30), Expect = 3e-007
Identities = 66/78 (84%)
Strand = Plus / Plus
Query: 233 tcacggtttccatggagccggcggcggcggaggcgaagggaacatgggcggtactgcaga 292
|||||| ||||||| | |||||||||||| | | ||||||||| ||||| || || ||
Sbjct: 446 tcacggcttccatgacgacggcggcggcggcgcggcagggaacattggcggcacggcgga 505
Query: 293 gaacatggtgttcttgtc 310
||||||||||||||||||
Sbjct: 506 gaacatggtgttcttgtc 523
>gb|BE353094.1|BE353094 DG1_4_F07.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 380
Score = 60.0 bits (30), Expect = 3e-007
Identities = 66/78 (84%)
Strand = Plus / Minus
Query: 233 tcacggtttccatggagccggcggcggcggaggcgaagggaacatgggcggtactgcaga 292
|||||| ||||||| | |||||||||||| | | ||||||||| ||||| || || ||
Sbjct: 169 tcacggcttccatgacgacggcggcggcggcgcggcagggaacattggcggcacggcgga 110
Query: 293 gaacatggtgttcttgtc 310
||||||||||||||||||
Sbjct: 109 gaacatggtgttcttgtc 92
>gb|BE357367.1|BE357367 DG1_148_A07.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 659
Score = 60.0 bits (30), Expect = 3e-007
Identities = 66/78 (84%)
Strand = Plus / Minus
Query: 233 tcacggtttccatggagccggcggcggcggaggcgaagggaacatgggcggtactgcaga 292
|||||| ||||||| | |||||||||||| | | ||||||||| ||||| || || ||
Sbjct: 474 tcacggcttccatgacgacggcggcggcggcgcggcagggaacattggcggcacggcgga 415
Query: 293 gaacatggtgttcttgtc 310
||||||||||||||||||
Sbjct: 414 gaacatggtgttcttgtc 397
Score = 46.1 bits (23), Expect = 0.004
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 579 ccgaacccaaccacgtagctcatcttc 605
||||| |||||||||||||||||||||
Sbjct: 116 ccgaaaccaaccacgtagctcatcttc 90
>gb|CD205740.1|CD205740 HS1_18_E08.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_18_E08_A012 3', mRNA sequence
Length = 601
Score = 60.0 bits (30), Expect = 3e-007
Identities = 66/78 (84%)
Strand = Plus / Minus
Query: 233 tcacggtttccatggagccggcggcggcggaggcgaagggaacatgggcggtactgcaga 292
|||||| ||||||| | |||||||||||| | | ||||||||| ||||| || || ||
Sbjct: 390 tcacggcttccatgacgacggcggcggcggcgcggcagggaacattggcggcacggcgga 331
Query: 293 gaacatggtgttcttgtc 310
||||||||||||||||||
Sbjct: 330 gaacatggtgttcttgtc 313
Score = 46.1 bits (23), Expect = 0.004
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 579 ccgaacccaaccacgtagctcatcttc 605
||||| |||||||||||||||||||||
Sbjct: 32 ccgaaaccaaccacgtagctcatcttc 6
>gb|CD220430.1|CD220430 CCC1_67_H06.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_67_H06_A007 3', mRNA sequence
Length = 635
Score = 60.0 bits (30), Expect = 3e-007
Identities = 66/78 (84%)
Strand = Plus / Minus
Query: 233 tcacggtttccatggagccggcggcggcggaggcgaagggaacatgggcggtactgcaga 292
|||||| ||||||| | |||||||||||| | | ||||||||| ||||| || || ||
Sbjct: 434 tcacggcttccatgacgacggcggcggcggcgcggcagggaacattggcggcacggcgga 375
Query: 293 gaacatggtgttcttgtc 310
||||||||||||||||||
Sbjct: 374 gaacatggtgttcttgtc 357
Score = 46.1 bits (23), Expect = 0.004
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 579 ccgaacccaaccacgtagctcatcttc 605
||||| |||||||||||||||||||||
Sbjct: 76 ccgaaaccaaccacgtagctcatcttc 50
>gb|CF071078.1|CF071078 FE1_15_D12.b1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
clone FE1_15_D12_A002 3', mRNA sequence
Length = 707
Score = 60.0 bits (30), Expect = 3e-007
Identities = 66/78 (84%)
Strand = Plus / Minus
Query: 233 tcacggtttccatggagccggcggcggcggaggcgaagggaacatgggcggtactgcaga 292
|||||| ||||||| | |||||||||||| | | ||||||||| ||||| || || ||
Sbjct: 497 tcacggcttccatgacgacggcggcggcggcgcggcagggaacattggcggcacggcgga 438
Query: 293 gaacatggtgttcttgtc 310
||||||||||||||||||
Sbjct: 437 gaacatggtgttcttgtc 420
Score = 44.1 bits (22), Expect = 0.015
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 579 ccgaacccaaccacgtagctcatctt 604
||||| ||||||||||||||||||||
Sbjct: 139 ccgaaaccaaccacgtagctcatctt 114
>gb|CX616301.1|CX616301 GABR1_27_D03.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_27_D03_A002 3', mRNA sequence
Length = 605
Score = 60.0 bits (30), Expect = 3e-007
Identities = 66/78 (84%)
Strand = Plus / Minus
Query: 233 tcacggtttccatggagccggcggcggcggaggcgaagggaacatgggcggtactgcaga 292
|||||| ||||||| | |||||||||||| | | ||||||||| ||||| || || ||
Sbjct: 395 tcacggcttccatgacgacggcggcggcggcgcggcagggaacattggcggcacggcgga 336
Query: 293 gaacatggtgttcttgtc 310
||||||||||||||||||
Sbjct: 335 gaacatggtgttcttgtc 318
Score = 46.1 bits (23), Expect = 0.004
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 579 ccgaacccaaccacgtagctcatcttc 605
||||| |||||||||||||||||||||
Sbjct: 37 ccgaaaccaaccacgtagctcatcttc 11
>gb|CX617846.1|CX617846 GABR1_36_D11.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_36_D11_A002 3', mRNA sequence
Length = 720
Score = 60.0 bits (30), Expect = 3e-007
Identities = 66/78 (84%)
Strand = Plus / Minus
Query: 233 tcacggtttccatggagccggcggcggcggaggcgaagggaacatgggcggtactgcaga 292
|||||| ||||||| | |||||||||||| | | ||||||||| ||||| || || ||
Sbjct: 509 tcacggcttccatgacgacggcggcggcggcgcggcagggaacattggcggcacggcgga 450
Query: 293 gaacatggtgttcttgtc 310
||||||||||||||||||
Sbjct: 449 gaacatggtgttcttgtc 432
Score = 46.1 bits (23), Expect = 0.004
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 579 ccgaacccaaccacgtagctcatcttc 605
||||| |||||||||||||||||||||
Sbjct: 151 ccgaaaccaaccacgtagctcatcttc 125
>gb|CX619537.1|CX619537 GABR1_46_D02.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_46_D02_A002 3', mRNA sequence
Length = 708
Score = 60.0 bits (30), Expect = 3e-007
Identities = 66/78 (84%)
Strand = Plus / Minus
Query: 233 tcacggtttccatggagccggcggcggcggaggcgaagggaacatgggcggtactgcaga 292
|||||| ||||||| | |||||||||||| | | ||||||||| ||||| || || ||
Sbjct: 498 tcacggcttccatgacgacggcggcggcggcgcggcagggaacattggcggcacggcgga 439
Query: 293 gaacatggtgttcttgtc 310
||||||||||||||||||
Sbjct: 438 gaacatggtgttcttgtc 421
Score = 46.1 bits (23), Expect = 0.004
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 579 ccgaacccaaccacgtagctcatcttc 605
||||| |||||||||||||||||||||
Sbjct: 140 ccgaaaccaaccacgtagctcatcttc 114
>gb|CW484465.1|CW484465 fsbb001f246j24f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f246j24, DNA
sequence
Length = 369
Score = 56.0 bits (28), Expect = 4e-006
Identities = 64/76 (84%)
Strand = Plus / Plus
Query: 233 tcacggtttccatggagccggcggcggcggaggcgaagggaacatgggcggtactgcaga 292
|||||| ||||||| | |||||||||||| | | ||||||||| ||||| || || ||
Sbjct: 109 tcacggcttccatgacgacggcggcggcggcgcggcagggaacattggcggcacggcgga 168
Query: 293 gaacatggtgttcttg 308
||||||||||||||||
Sbjct: 169 gaacatggtgttcttg 184
>gb|CX611325.1|CX611325 ANR1_24_B05.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_24_B05_A002 3', mRNA sequence
Length = 705
Score = 52.0 bits (26), Expect = 6e-005
Identities = 65/78 (83%)
Strand = Plus / Minus
Query: 233 tcacggtttccatggagccggcggcggcggaggcgaagggaacatgggcggtactgcaga 292
|||||| ||||||| | |||||||||||| | | ||||||||| ||||| || || ||
Sbjct: 495 tcacggcttccatgacgacggcggcggcggcgcggcagggaacattggcggcacggcgga 436
Query: 293 gaacatggtgttcttgtc 310
|||||||||||||||||
Sbjct: 435 aaacatggtgttcttgtc 418
Score = 46.1 bits (23), Expect = 0.004
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 579 ccgaacccaaccacgtagctcatcttc 605
||||| |||||||||||||||||||||
Sbjct: 137 ccgaaaccaaccacgtagctcatcttc 111
>gb|CX613114.1|CX613114 GABR1_6_G11.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_6_G11_A002 3', mRNA sequence
Length = 683
Score = 52.0 bits (26), Expect = 6e-005
Identities = 65/78 (83%)
Strand = Plus / Minus
Query: 233 tcacggtttccatggagccggcggcggcggaggcgaagggaacatgggcggtactgcaga 292
|||||| ||||||| | |||||||||||| | | ||||||||| ||||| || || ||
Sbjct: 493 tcacggcttccatgacgacggcggcggcggcgcggcagggaacattggcggcacggcgga 434
Query: 293 gaacatggtgttcttgtc 310
|||||||||||||||||
Sbjct: 433 aaacatggtgttcttgtc 416
Score = 46.1 bits (23), Expect = 0.004
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 579 ccgaacccaaccacgtagctcatcttc 605
||||| |||||||||||||||||||||
Sbjct: 135 ccgaaaccaaccacgtagctcatcttc 109
>gb|CD220536.1|CD220536 CCC1_67_H06.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_67_H06_A007 5', mRNA sequence
Length = 645
Score = 46.1 bits (23), Expect = 0.004
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 579 ccgaacccaaccacgtagctcatcttc 605
||||| |||||||||||||||||||||
Sbjct: 549 ccgaaaccaaccacgtagctcatcttc 523
>gb|CW171034.1|CW171034 104_581_11155527_148_36522_054 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11155527, DNA
sequence
Length = 400
Score = 44.1 bits (22), Expect = 0.015
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 251 cggcggcggcggaggcgaaggg 272
||||||||||||||||||||||
Sbjct: 297 cggcggcggcggaggcgaaggg 276
>gb|BE125743.1|BE125743 DG1_55_D08.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 288
Score = 44.1 bits (22), Expect = 0.015
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 249 gccggcggcggcggaggcgaag 270
||||||||||||||||||||||
Sbjct: 68 gccggcggcggcggaggcgaag 47
>gb|BF481805.1|BF481805 FM1_20_E12.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 503
Score = 44.1 bits (22), Expect = 0.015
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 249 gccggcggcggcggaggcgaag 270
||||||||||||||||||||||
Sbjct: 415 gccggcggcggcggaggcgaag 394
>gb|BG739401.1|BG739401 EM1_82_E02.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 313
Score = 44.1 bits (22), Expect = 0.015
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 270 gggaacatgggcggtactgcagagaacatggtgttctt 307
|||||||| || || | |||||||||||||||||||||
Sbjct: 109 gggaacattggaggaattgcagagaacatggtgttctt 72
>gb|CD204726.1|CD204726 HS1_9_C04.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA clone
HS1_9_C04_A012 5', mRNA sequence
Length = 541
Score = 44.1 bits (22), Expect = 0.015
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 249 gccggcggcggcggaggcgaag 270
||||||||||||||||||||||
Sbjct: 483 gccggcggcggcggaggcgaag 462
>gb|CD211499.1|CD211499 HS1_60_G12.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_60_G12_A012 5', mRNA sequence
Length = 752
Score = 44.1 bits (22), Expect = 0.015
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 249 gccggcggcggcggaggcgaag 270
||||||||||||||||||||||
Sbjct: 463 gccggcggcggcggaggcgaag 442
>gb|CD230813.1|CD230813 SS1_9_E11.g1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_9_E11_A012 5', mRNA sequence
Length = 736
Score = 44.1 bits (22), Expect = 0.015
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 249 gccggcggcggcggaggcgaag 270
||||||||||||||||||||||
Sbjct: 451 gccggcggcggcggaggcgaag 430
>gb|CN140708.1|CN140708 OX1_46_A01.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_46_A01_A002 5', mRNA sequence
Length = 752
Score = 44.1 bits (22), Expect = 0.015
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 249 gccggcggcggcggaggcgaag 270
||||||||||||||||||||||
Sbjct: 440 gccggcggcggcggaggcgaag 419
>gb|CN140709.1|CN140709 OX1_46_A02.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_46_A02_A002 5', mRNA sequence
Length = 651
Score = 44.1 bits (22), Expect = 0.015
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 249 gccggcggcggcggaggcgaag 270
||||||||||||||||||||||
Sbjct: 368 gccggcggcggcggaggcgaag 347
>gb|CX617087.1|CX617087 GABR1_31_D05.g1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_31_D05_A002 5', mRNA sequence
Length = 840
Score = 44.1 bits (22), Expect = 0.015
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 249 gccggcggcggcggaggcgaag 270
||||||||||||||||||||||
Sbjct: 540 gccggcggcggcggaggcgaag 519
>gb|BZ329573.1|BZ329573 hv86g02.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone hv86g02 5', DNA sequence
Length = 614
Score = 42.1 bits (21), Expect = 0.059
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 250 ccggcggcggcggaggcgaag 270
|||||||||||||||||||||
Sbjct: 357 ccggcggcggcggaggcgaag 337
>gb|CL156055.1|CL156055 104_342_10782588_116_31474_300 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10782588, DNA
sequence
Length = 474
Score = 42.1 bits (21), Expect = 0.059
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 198 tcagataccataccataccat 218
|||||||||||||||||||||
Sbjct: 469 tcagataccataccataccat 449
>gb|CW039001.1|CW039001 104_271_10505241_114_30387 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10505241, DNA
sequence
Length = 540
Score = 42.1 bits (21), Expect = 0.059
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 198 tcagataccataccataccat 218
|||||||||||||||||||||
Sbjct: 119 tcagataccataccataccat 99
>gb|CW057286.1|CW057286 104_299_10518137_115_30171 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10518137, DNA
sequence
Length = 516
Score = 42.1 bits (21), Expect = 0.059
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 198 tcagataccataccataccat 218
|||||||||||||||||||||
Sbjct: 372 tcagataccataccataccat 352
>gb|CW155481.1|CW155481 104_558_11146163_116_36367_048 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11146163, DNA
sequence
Length = 672
Score = 42.1 bits (21), Expect = 0.059
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 247 gagccggcggcggcggaggcg 267
|||||||||||||||||||||
Sbjct: 86 gagccggcggcggcggaggcg 106
>gb|CW241151.1|CW241151 104_700_11218609_148_37540_011 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11218609, DNA
sequence
Length = 631
Score = 42.1 bits (21), Expect = 0.059
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 250 ccggcggcggcggaggcgaag 270
|||||||||||||||||||||
Sbjct: 280 ccggcggcggcggaggcgaag 300
>gb|CW248313.1|CW248313 104_709_11222232_116_35030_086 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11222232, DNA
sequence
Length = 614
Score = 42.1 bits (21), Expect = 0.059
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 247 gagccggcggcggcggaggcgaagg 271
|||||||||||||||| ||||||||
Sbjct: 355 gagccggcggcggcggcggcgaagg 331
>gb|CW248314.1|CW248314 104_709_11222232_148_35026_086 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11222232, DNA
sequence
Length = 651
Score = 42.1 bits (21), Expect = 0.059
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 247 gagccggcggcggcggaggcgaagg 271
|||||||||||||||| ||||||||
Sbjct: 480 gagccggcggcggcggcggcgaagg 504
>gb|CW274363.1|CW274363 104_747_11404387_148_35370_076 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11404387, DNA
sequence
Length = 396
Score = 42.1 bits (21), Expect = 0.059
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 247 gagccggcggcggcggaggcgaagg 271
|||||||||||||||| ||||||||
Sbjct: 102 gagccggcggcggcggcggcgaagg 78
>gb|CW312981.1|CW312981 104_803_11471048_148_35789_030 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11471048, DNA
sequence
Length = 747
Score = 42.1 bits (21), Expect = 0.059
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 198 tcagataccataccataccat 218
|||||||||||||||||||||
Sbjct: 205 tcagataccataccataccat 185
>gb|CW355226.1|CW355226 fsbb001f019m09f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f019m09, DNA
sequence
Length = 742
Score = 42.1 bits (21), Expect = 0.059
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 247 gagccggcggcggcggaggcg 267
|||||||||||||||||||||
Sbjct: 275 gagccggcggcggcggaggcg 295
>gb|CW406606.1|CW406606 fsbb001f099l05f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f099l05, DNA
sequence
Length = 572
Score = 42.1 bits (21), Expect = 0.059
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 247 gagccggcggcggcggaggcg 267
|||||||||||||||||||||
Sbjct: 548 gagccggcggcggcggaggcg 528
>gb|CW406607.1|CW406607 fsbb001f099l05k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f099l05, DNA
sequence
Length = 606
Score = 42.1 bits (21), Expect = 0.059
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 247 gagccggcggcggcggaggcg 267
|||||||||||||||||||||
Sbjct: 455 gagccggcggcggcggaggcg 475
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 286,061
Number of Sequences: 832831
Number of extensions: 286061
Number of successful extensions: 122757
Number of sequences better than 0.5: 91
Number of HSP's better than 0.5 without gapping: 88
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 122497
Number of HSP's gapped (non-prelim): 208
length of query: 615
length of database: 491,359,669
effective HSP length: 19
effective length of query: 596
effective length of database: 475,535,880
effective search space: 283419384480
effective search space used: 283419384480
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)