BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 33531.2.1
(724 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BZ343484.1|BZ343484 ho55h04.b1 WGS-SbicolorF (JM107 adap... 135 6e-030
gb|BZ343485.1|BZ343485 ho55h04.b2 WGS-SbicolorF (JM107 adap... 135 6e-030
gb|CW020744.1|CW020744 104_109_10409144_116_30500 Sorghum m... 135 6e-030
gb|CW305356.1|CW305356 104_790_11466270_148_37437_021 Sorgh... 135 6e-030
gb|CW061864.1|CW061864 104_305_10520635_114_30150 Sorghum m... 121 9e-026
gb|CW125152.1|CW125152 104_505_11112180_116_34716_044 Sorgh... 121 9e-026
gb|CW488963.1|CW488963 fsbb001f265k02k0 Sorghum methylation... 121 9e-026
gb|BH245440.1|BH245440 pSB0606 S. bicolor BTx623 PstI-diges... 52 7e-005
gb|CW166848.1|CW166848 104_575_11153285_148_36762_017 Sorgh... 52 7e-005
gb|AW746789.1|AW746789 WS1_55_A07.b1_A002 Water-stressed 1 ... 52 7e-005
gb|BZ336813.1|BZ336813 hz39d04.b1 WGS-SbicolorF (JM107 adap... 48 0.001
gb|CW419268.1|CW419268 fsbb001f124a23f0 Sorghum methylation... 44 0.018
gb|CW329489.1|CW329489 104_826_11479872_116_35998_096 Sorgh... 42 0.070
gb|CX617232.1|CX617232 GABR1_32_B11.g1_A002 GA- or brassino... 42 0.070
gb|BZ336778.1|BZ336778 hz39b09.b1 WGS-SbicolorF (JM107 adap... 40 0.28
gb|CW183210.1|CW183210 104_599_11164492_116_36678_016 Sorgh... 40 0.28
gb|CW392488.1|CW392488 fsbb001f079c06k0 Sorghum methylation... 40 0.28
>gb|BZ343484.1|BZ343484 ho55h04.b1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone ho55h04 5', DNA sequence
Length = 454
Score = 135 bits (68), Expect = 6e-030
Identities = 77/80 (96%)
Strand = Plus / Minus
Query: 278 gacgaacaggcggagtgcctgatgaggaggacgttgctcgctcacaccgactacatctac 337
||||||| || ||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 231 gacgaacgggaggagtgcctgatgaggaggacgttggtcgctcacaccgactacatctac 172
Query: 338 acccaggggaagcacaacta 357
||||||||||||||||||||
Sbjct: 171 acccaggggaagcacaacta 152
Score = 58.0 bits (29), Expect = 1e-006
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 470 ctagccaacctgaagttctacagtgccgt 498
|||||||||||||||||||||||||||||
Sbjct: 100 ctagccaacctgaagttctacagtgccgt 72
>gb|BZ343485.1|BZ343485 ho55h04.b2 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone ho55h04 5', DNA sequence
Length = 640
Score = 135 bits (68), Expect = 6e-030
Identities = 77/80 (96%)
Strand = Plus / Minus
Query: 278 gacgaacaggcggagtgcctgatgaggaggacgttgctcgctcacaccgactacatctac 337
||||||| || ||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 244 gacgaacgggaggagtgcctgatgaggaggacgttggtcgctcacaccgactacatctac 185
Query: 338 acccaggggaagcacaacta 357
||||||||||||||||||||
Sbjct: 184 acccaggggaagcacaacta 165
Score = 121 bits (61), Expect = 9e-026
Identities = 93/103 (90%), Gaps = 3/103 (2%)
Strand = Plus / Minus
Query: 17 ggctccaagcagctgaaggctagtcttctcatggtggtagcagctctgctcctcctcatc 76
||||||| |||||| ||||||||||| ||| || ||||||||||||||||||||||||
Sbjct: 625 ggctccaggcagctcaaggctagtctcctc---gtcgtagcagctctgctcctcctcatc 569
Query: 77 tgcacctgcactaccagggggcaagcggcaaggccggagccag 119
|||||||||||||| ||||||||||| ||||||||||| ||||
Sbjct: 568 tgcacctgcactactagggggcaagcagcaaggccggaaccag 526
Score = 58.0 bits (29), Expect = 1e-006
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 470 ctagccaacctgaagttctacagtgccgt 498
|||||||||||||||||||||||||||||
Sbjct: 113 ctagccaacctgaagttctacagtgccgt 85
>gb|CW020744.1|CW020744 104_109_10409144_116_30500 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10409144, DNA
sequence
Length = 661
Score = 135 bits (68), Expect = 6e-030
Identities = 77/80 (96%)
Strand = Plus / Minus
Query: 278 gacgaacaggcggagtgcctgatgaggaggacgttgctcgctcacaccgactacatctac 337
||||||| || ||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 154 gacgaacgggaggagtgcctgatgaggaggacgttggtcgctcacaccgactacatctac 95
Query: 338 acccaggggaagcacaacta 357
||||||||||||||||||||
Sbjct: 94 acccaggggaagcacaacta 75
Score = 121 bits (61), Expect = 9e-026
Identities = 93/103 (90%), Gaps = 3/103 (2%)
Strand = Plus / Minus
Query: 17 ggctccaagcagctgaaggctagtcttctcatggtggtagcagctctgctcctcctcatc 76
||||||| |||||| ||||||||||| ||| || ||||||||||||||||||||||||
Sbjct: 535 ggctccaggcagctcaaggctagtctcctc---gtcgtagcagctctgctcctcctcatc 479
Query: 77 tgcacctgcactaccagggggcaagcggcaaggccggagccag 119
|||||||||||||| ||||||||||| ||||||||||| ||||
Sbjct: 478 tgcacctgcactactagggggcaagcagcaaggccggaaccag 436
Score = 46.1 bits (23), Expect = 0.004
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 470 ctagccaacctgaagttctacag 492
|||||||||||||||||||||||
Sbjct: 23 ctagccaacctgaagttctacag 1
>gb|CW305356.1|CW305356 104_790_11466270_148_37437_021 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11466270, DNA
sequence
Length = 712
Score = 135 bits (68), Expect = 6e-030
Identities = 77/80 (96%)
Strand = Plus / Plus
Query: 278 gacgaacaggcggagtgcctgatgaggaggacgttgctcgctcacaccgactacatctac 337
||||||| || ||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 174 gacgaacgggaggagtgcctgatgaggaggacgttggtcgctcacaccgactacatctac 233
Query: 338 acccaggggaagcacaacta 357
||||||||||||||||||||
Sbjct: 234 acccaggggaagcacaacta 253
Score = 58.0 bits (29), Expect = 1e-006
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 470 ctagccaacctgaagttctacagtgccgt 498
|||||||||||||||||||||||||||||
Sbjct: 305 ctagccaacctgaagttctacagtgccgt 333
Score = 40.1 bits (20), Expect = 0.28
Identities = 48/57 (84%), Gaps = 1/57 (1%)
Strand = Plus / Plus
Query: 545 cctttctgcagttctgccaggctnnngattattttcatatatacctcgctaattacc 601
|||||||||||||||| || || |||||||||||| ||||| ||| ||||||||
Sbjct: 378 cctttctgcagttctgtgag-ctgtggattattttcatgtatacttcgttaattacc 433
>gb|CW061864.1|CW061864 104_305_10520635_114_30150 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10520635, DNA
sequence
Length = 667
Score = 121 bits (61), Expect = 9e-026
Identities = 93/103 (90%), Gaps = 3/103 (2%)
Strand = Plus / Plus
Query: 17 ggctccaagcagctgaaggctagtcttctcatggtggtagcagctctgctcctcctcatc 76
||||||| |||||| ||||||||||| ||| || ||||||||||||||||||||||||
Sbjct: 405 ggctccaggcagctcaaggctagtctcctc---gtcgtagcagctctgctcctcctcatc 461
Query: 77 tgcacctgcactaccagggggcaagcggcaaggccggagccag 119
|||||||||||||| ||||||||||| ||||||||||| ||||
Sbjct: 462 tgcacctgcactactagggggcaagcagcaaggccggaaccag 504
>gb|CW125152.1|CW125152 104_505_11112180_116_34716_044 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11112180, DNA
sequence
Length = 470
Score = 121 bits (61), Expect = 9e-026
Identities = 67/69 (97%)
Strand = Plus / Minus
Query: 289 ggagtgcctgatgaggaggacgttgctcgctcacaccgactacatctacacccaggggaa 348
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 175 ggagtgcatgatgaggaggacgttggtcgctcacaccgactacatctacacccaggggaa 116
Query: 349 gcacaacta 357
|||||||||
Sbjct: 115 gcacaacta 107
Score = 58.0 bits (29), Expect = 1e-006
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 470 ctagccaacctgaagttctacagtgccgt 498
|||||||||||||||||||||||||||||
Sbjct: 55 ctagccaacctgaagttctacagtgccgt 27
>gb|CW488963.1|CW488963 fsbb001f265k02k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f265k02, DNA
sequence
Length = 687
Score = 121 bits (61), Expect = 9e-026
Identities = 93/103 (90%), Gaps = 3/103 (2%)
Strand = Plus / Minus
Query: 17 ggctccaagcagctgaaggctagtcttctcatggtggtagcagctctgctcctcctcatc 76
||||||| |||||| ||||||||||| ||| || ||||||||||||||||||||||||
Sbjct: 335 ggctccaggcagctcaaggctagtctcctc---gtcgtagcagctctgctcctcctcatc 279
Query: 77 tgcacctgcactaccagggggcaagcggcaaggccggagccag 119
|||||||||||||| ||||||||||| ||||||||||| ||||
Sbjct: 278 tgcacctgcactactagggggcaagcagcaaggccggaaccag 236
>gb|BH245440.1|BH245440 pSB0606 S. bicolor BTx623 PstI-digested total genomic DNA library
Sorghum bicolor genomic clone pSB0606, DNA sequence
Length = 811
Score = 52.0 bits (26), Expect = 7e-005
Identities = 47/54 (87%)
Strand = Plus / Minus
Query: 290 gagtgcctgatgaggaggacgttgctcgctcacaccgactacatctacacccag 343
|||||| |||||||| | ||| || ||| ||||||||||||||||||||||||
Sbjct: 751 gagtgcatgatgaggcgcacgctgaacgcgcacaccgactacatctacacccag 698
>gb|CW166848.1|CW166848 104_575_11153285_148_36762_017 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11153285, DNA
sequence
Length = 618
Score = 52.0 bits (26), Expect = 7e-005
Identities = 47/54 (87%)
Strand = Plus / Plus
Query: 290 gagtgcctgatgaggaggacgttgctcgctcacaccgactacatctacacccag 343
|||||| |||||||| | ||| || ||| ||||||||||||||||||||||||
Sbjct: 251 gagtgcatgatgaggcgcacgctgaacgcgcacaccgactacatctacacccag 304
>gb|AW746789.1|AW746789 WS1_55_A07.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 463
Score = 52.0 bits (26), Expect = 7e-005
Identities = 47/54 (87%)
Strand = Plus / Plus
Query: 290 gagtgcctgatgaggaggacgttgctcgctcacaccgactacatctacacccag 343
|||||| |||||||| | ||| || ||| ||||||||||||||||||||||||
Sbjct: 55 gagtgcatgatgaggcgcacgctgaacgcgcacaccgactacatctacacccag 108
>gb|BZ336813.1|BZ336813 hz39d04.b1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone hz39d04 5', DNA sequence
Length = 521
Score = 48.1 bits (24), Expect = 0.001
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 514 attgttttaaaatatatataccta 537
||||||||||||||||||||||||
Sbjct: 480 attgttttaaaatatatataccta 457
>gb|CW419268.1|CW419268 fsbb001f124a23f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f124a23, DNA
sequence
Length = 379
Score = 44.1 bits (22), Expect = 0.018
Identities = 46/54 (85%)
Strand = Plus / Minus
Query: 290 gagtgcctgatgaggaggacgttgctcgctcacaccgactacatctacacccag 343
|||||| |||||||| | ||| || ||| |||||||||||||| |||||||||
Sbjct: 317 gagtgcatgatgaggcgcacggtgaacgcgcacaccgactacatgtacacccag 264
>gb|CW329489.1|CW329489 104_826_11479872_116_35998_096 Sorghum methylation filtered
library (LibID: 104) Sorghum bicolor genomic clone
11479872, DNA sequence
Length = 692
Score = 42.1 bits (21), Expect = 0.070
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 55 agcagctctgctcctcctcatctgc 79
|||||||| ||||||||||||||||
Sbjct: 45 agcagctcagctcctcctcatctgc 69
>gb|CX617232.1|CX617232 GABR1_32_B11.g1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_32_B11_A002 5', mRNA sequence
Length = 853
Score = 42.1 bits (21), Expect = 0.070
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 55 agcagctctgctcctcctcatctgc 79
|||||||| ||||||||||||||||
Sbjct: 237 agcagctcagctcctcctcatctgc 261
>gb|BZ336778.1|BZ336778 hz39b09.b1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone hz39b09 5', DNA sequence
Length = 575
Score = 40.1 bits (20), Expect = 0.28
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 514 attgttttaaaatatatataccta 537
||||||||||||||||||| ||||
Sbjct: 495 attgttttaaaatatatatgccta 472
>gb|CW183210.1|CW183210 104_599_11164492_116_36678_016 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11164492, DNA
sequence
Length = 690
Score = 40.1 bits (20), Expect = 0.28
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 263 gacgacgacggagacgacga 282
||||||||||||||||||||
Sbjct: 663 gacgacgacggagacgacga 644
>gb|CW392488.1|CW392488 fsbb001f079c06k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f079c06, DNA
sequence
Length = 527
Score = 40.1 bits (20), Expect = 0.28
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 263 gacgacgacggagacgacga 282
||||||||||||||||||||
Sbjct: 424 gacgacgacggagacgacga 405
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 232,040
Number of Sequences: 832831
Number of extensions: 232040
Number of successful extensions: 69612
Number of sequences better than 0.5: 17
Number of HSP's better than 0.5 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 69555
Number of HSP's gapped (non-prelim): 52
length of query: 724
length of database: 491,359,669
effective HSP length: 20
effective length of query: 704
effective length of database: 474,703,049
effective search space: 334190946496
effective search space used: 334190946496
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)