BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3230315.2.1
(457 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW339305.1|CW339305 104_840_11485203_116_36138_016 Sorgh... 452 e-125
gb|AW287387.2|AW287387 LG1_303_C07.b1_A002 Light Grown 1 (L... 452 e-125
gb|CD203710.1|CD203710 HS1_1_D09.b1_A012 Heat-shocked seedl... 452 e-125
gb|CD233006.1|CD233006 SS1_11_H04.b1_A012 Salt-stressed see... 452 e-125
gb|CD432457.1|CD432457 ETH1_30_A08.b1_A002 Ethylene-treated... 452 e-125
gb|CN125758.1|CN125758 RHOH1_13_D02.b1_A002 Acid- and alkal... 452 e-125
gb|CD228200.1|CD228200 CCC1_6_B10.b1_A007 Callus culture/ce... 444 e-123
gb|CX609223.1|CX609223 ANR1_11_H09.b1_A002 Anaerobic roots ... 444 e-123
gb|CD231524.1|CD231524 SS1_22_A05.b1_A012 Salt-stressed see... 381 e-104
gb|CW216948.1|CW216948 104_650_11195395_148_37130_080 Sorgh... 355 2e-096
gb|CD236278.1|CD236278 SS1_33_D08.b1_A012 Salt-stressed see... 258 4e-067
gb|CW172749.1|CW172749 104_584_11156458_148_36543_045 Sorgh... 129 2e-028
gb|CW112880.1|CW112880 104_486_11105136_116_34548_082 Sorgh... 96 3e-018
gb|CW266135.1|CW266135 104_735_11232263_148_35265_084 Sorgh... 96 3e-018
gb|CW386938.1|CW386938 fsbb001f071b07f0 Sorghum methylation... 96 3e-018
gb|CX613760.1|CX613760 GABR1_10_C01.b1_A002 GA- or brassino... 96 3e-018
gb|BF421136.1|BF421136 FM1_6_H03.g1_A003 Floral-Induced Mer... 92 5e-017
gb|CW349542.1|CW349542 fsbb001f010h01f0 Sorghum methylation... 90 2e-016
gb|CW441491.1|CW441491 fsbb001f160k16f0 Sorghum methylation... 90 2e-016
gb|CW484442.1|CW484442 fsbb001f246j11k0 Sorghum methylation... 90 2e-016
gb|CW221063.1|CW221063 104_656_11197697_148_37167_079 Sorgh... 86 3e-015
gb|CW355045.1|CW355045 fsbb001f019i07f0 Sorghum methylation... 86 3e-015
gb|CW355046.1|CW355046 fsbb001f019i07k0 Sorghum methylation... 86 3e-015
gb|BE361683.1|BE361683 DG1_81_F09.g1_A002 Dark Grown 1 (DG1... 86 3e-015
gb|CW369334.1|CW369334 fsbb001f043l06f0 Sorghum methylation... 78 8e-013
gb|CW039718.1|CW039718 104_272_10505656_114_30389 Sorghum m... 70 2e-010
gb|CW172299.1|CW172299 104_583_11156215_148_36534_024 Sorgh... 64 1e-008
gb|CW276959.1|CW276959 104_750_11405768_116_35395_018 Sorgh... 62 5e-008
gb|CW339306.1|CW339306 104_840_11485203_148_36139_016 Sorgh... 62 5e-008
gb|AW746386.1|AW746386 WS1_49_G01.g1_A002 Water-stressed 1 ... 62 5e-008
gb|AW924063.1|AW924063 WS1_49_G01.b1_A002 Water-stressed 1 ... 62 5e-008
gb|CX608981.1|CX608981 ANR1_10_A01.b1_A002 Anaerobic roots ... 62 5e-008
gb|CN138851.1|CN138851 OX1_14_H09.b1_A002 Oxidatively-stres... 56 3e-006
gb|CX606104.1|CX606104 ANR1_1_D12.b1_A002 Anaerobic roots S... 56 3e-006
gb|CD203831.1|CD203831 HS1_2_G09.b1_A012 Heat-shocked seedl... 54 1e-005
gb|CW075985.1|CW075985 104_364_10810037_114_31802_101 Sorgh... 52 5e-005
gb|CW084629.1|CW084629 104_427_10945909_116_32511_055 Sorgh... 52 5e-005
gb|CW350958.1|CW350958 fsbb001f012i07k0 Sorghum methylation... 52 5e-005
gb|CW481932.1|CW481932 fsbb001f241m07f0 Sorghum methylation... 52 5e-005
gb|CW481933.1|CW481933 fsbb001f241m07k0 Sorghum methylation... 52 5e-005
gb|BG355811.1|BG355811 EM1_17_A06.g1_A002 Embryo 1 (EM1) So... 52 5e-005
gb|CF488110.1|CF488110 POL1_47_G11.g1_A002 Pollen Sorghum b... 52 5e-005
gb|CW084628.1|CW084628 104_427_10945909_114_32507_055 Sorgh... 48 7e-004
gb|CW474162.1|CW474162 fsbb001f229n21k0 Sorghum methylation... 46 0.003
gb|BG357676.1|BG357676 OV2_32_H07.g1_A002 Ovary 2 (OV2) Sor... 46 0.003
>gb|CW339305.1|CW339305 104_840_11485203_116_36138_016 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11485203, DNA
sequence
Length = 626
Score = 452 bits (228), Expect = e-125
Identities = 294/316 (93%)
Strand = Plus / Plus
Query: 135 ccgccgcgcgctcacaagccggtggtgaaggggatggacgtgccggcgagccagaggtcg 194
|||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 51 ccgccgtgcgctcacaagccggtggtgaaggggatggacgtgccggcgagccagacgtcc 110
Query: 195 ccgtcgatgaagttgccaacggtgaaggcgctggcctcggcggcgctggtgatgacgcgg 254
|||||||||||| ||| |||||||| |||||||||||||| |||||||||||||| |||
Sbjct: 111 ccgtcgatgaaggagccgacggtgaacgcgctggcctcggccgcgctggtgatgacacgg 170
Query: 255 taccccttccacttgacccgcccggacgtgccggcgccgggccccgtgttcatgtactcg 314
|||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||
Sbjct: 171 taccccttccacttgacccggccggaggttccggcgccgggccccgtgttcatgtactcg 230
Query: 315 ccgtagtagagcgtgtcgagcgcgaagctgccgttccactcgagccagccggccgggtcg 374
||||||||||||||||||||||||||| |||||| ||||||||||||||| |||||| ||
Sbjct: 231 ccgtagtagagcgtgtcgagcgcgaagttgccgtcccactcgagccagcccgccggggcg 290
Query: 375 accagcgagtccagctccgactgcaggtacaccgtgcgggagtactgcttccatgggcgg 434
| |||||||||||||||||||||||| | |||||||||||||||||||||||||| |||
Sbjct: 291 atgagcgagtccagctccgactgcaggaaaaccgtgcgggagtactgcttccatggccgg 350
Query: 435 cccaggtaggtcttgg 450
|| |||||||||||||
Sbjct: 351 ccgaggtaggtcttgg 366
>gb|AW287387.2|AW287387 LG1_303_C07.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 490
Score = 452 bits (228), Expect = e-125
Identities = 294/316 (93%)
Strand = Plus / Minus
Query: 135 ccgccgcgcgctcacaagccggtggtgaaggggatggacgtgccggcgagccagaggtcg 194
|||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 449 ccgccgtgcgctcacaagccggtggtgaaggggatggacgtgccggcgagccagacgtcc 390
Query: 195 ccgtcgatgaagttgccaacggtgaaggcgctggcctcggcggcgctggtgatgacgcgg 254
|||||||||||| ||| |||||||| |||||||||||||| |||||||||||||| |||
Sbjct: 389 ccgtcgatgaaggagccgacggtgaacgcgctggcctcggccgcgctggtgatgacacgg 330
Query: 255 taccccttccacttgacccgcccggacgtgccggcgccgggccccgtgttcatgtactcg 314
|||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||
Sbjct: 329 taccccttccacttgacccggccggaggttccggcgccgggccccgtgttcatgtactcg 270
Query: 315 ccgtagtagagcgtgtcgagcgcgaagctgccgttccactcgagccagccggccgggtcg 374
||||||||||||||||||||||||||| |||||| ||||||||||||||| |||||| ||
Sbjct: 269 ccgtagtagagcgtgtcgagcgcgaagttgccgtcccactcgagccagcccgccggggcg 210
Query: 375 accagcgagtccagctccgactgcaggtacaccgtgcgggagtactgcttccatgggcgg 434
| |||||||||||||||||||||||| | |||||||||||||||||||||||||| |||
Sbjct: 209 atgagcgagtccagctccgactgcaggaaaaccgtgcgggagtactgcttccatggccgg 150
Query: 435 cccaggtaggtcttgg 450
|| |||||||||||||
Sbjct: 149 ccgaggtaggtcttgg 134
>gb|CD203710.1|CD203710 HS1_1_D09.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA clone
HS1_1_D09_A012 3', mRNA sequence
Length = 654
Score = 452 bits (228), Expect = e-125
Identities = 294/316 (93%)
Strand = Plus / Minus
Query: 135 ccgccgcgcgctcacaagccggtggtgaaggggatggacgtgccggcgagccagaggtcg 194
|||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 477 ccgccgtgcgctcacaagccggtggtgaaggggatggacgtgccggcgagccagacgtcc 418
Query: 195 ccgtcgatgaagttgccaacggtgaaggcgctggcctcggcggcgctggtgatgacgcgg 254
|||||||||||| ||| |||||||| |||||||||||||| |||||||||||||| |||
Sbjct: 417 ccgtcgatgaaggagccgacggtgaacgcgctggcctcggccgcgctggtgatgacacgg 358
Query: 255 taccccttccacttgacccgcccggacgtgccggcgccgggccccgtgttcatgtactcg 314
|||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||
Sbjct: 357 taccccttccacttgacccggccggaggttccggcgccgggccccgtgttcatgtactcg 298
Query: 315 ccgtagtagagcgtgtcgagcgcgaagctgccgttccactcgagccagccggccgggtcg 374
||||||||||||||||||||||||||| |||||| ||||||||||||||| |||||| ||
Sbjct: 297 ccgtagtagagcgtgtcgagcgcgaagttgccgtcccactcgagccagcccgccggggcg 238
Query: 375 accagcgagtccagctccgactgcaggtacaccgtgcgggagtactgcttccatgggcgg 434
| |||||||||||||||||||||||| | |||||||||||||||||||||||||| |||
Sbjct: 237 atgagcgagtccagctccgactgcaggaaaaccgtgcgggagtactgcttccatggccgg 178
Query: 435 cccaggtaggtcttgg 450
|| |||||||||||||
Sbjct: 177 ccgaggtaggtcttgg 162
>gb|CD233006.1|CD233006 SS1_11_H04.b1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_11_H04_A012 3', mRNA sequence
Length = 635
Score = 452 bits (228), Expect = e-125
Identities = 294/316 (93%)
Strand = Plus / Minus
Query: 135 ccgccgcgcgctcacaagccggtggtgaaggggatggacgtgccggcgagccagaggtcg 194
|||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 458 ccgccgtgcgctcacaagccggtggtgaaggggatggacgtgccggcgagccagacgtcc 399
Query: 195 ccgtcgatgaagttgccaacggtgaaggcgctggcctcggcggcgctggtgatgacgcgg 254
|||||||||||| ||| |||||||| |||||||||||||| |||||||||||||| |||
Sbjct: 398 ccgtcgatgaaggagccgacggtgaacgcgctggcctcggccgcgctggtgatgacacgg 339
Query: 255 taccccttccacttgacccgcccggacgtgccggcgccgggccccgtgttcatgtactcg 314
|||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||
Sbjct: 338 taccccttccacttgacccggccggaggttccggcgccgggccccgtgttcatgtactcg 279
Query: 315 ccgtagtagagcgtgtcgagcgcgaagctgccgttccactcgagccagccggccgggtcg 374
||||||||||||||||||||||||||| |||||| ||||||||||||||| |||||| ||
Sbjct: 278 ccgtagtagagcgtgtcgagcgcgaagttgccgtcccactcgagccagcccgccggggcg 219
Query: 375 accagcgagtccagctccgactgcaggtacaccgtgcgggagtactgcttccatgggcgg 434
| |||||||||||||||||||||||| | |||||||||||||||||||||||||| |||
Sbjct: 218 atgagcgagtccagctccgactgcaggaaaaccgtgcgggagtactgcttccatggccgg 159
Query: 435 cccaggtaggtcttgg 450
|| |||||||||||||
Sbjct: 158 ccgaggtaggtcttgg 143
>gb|CD432457.1|CD432457 ETH1_30_A08.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_30_A08_A002 3', mRNA sequence
Length = 567
Score = 452 bits (228), Expect = e-125
Identities = 294/316 (93%)
Strand = Plus / Minus
Query: 135 ccgccgcgcgctcacaagccggtggtgaaggggatggacgtgccggcgagccagaggtcg 194
|||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 361 ccgccgtgcgctcacaagccggtggtgaaggggatggacgtgccggcgagccagacgtcc 302
Query: 195 ccgtcgatgaagttgccaacggtgaaggcgctggcctcggcggcgctggtgatgacgcgg 254
|||||||||||| ||| |||||||| |||||||||||||| |||||||||||||| |||
Sbjct: 301 ccgtcgatgaaggagccgacggtgaacgcgctggcctcggccgcgctggtgatgacacgg 242
Query: 255 taccccttccacttgacccgcccggacgtgccggcgccgggccccgtgttcatgtactcg 314
|||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||
Sbjct: 241 taccccttccacttgacccggccggaggttccggcgccgggccccgtgttcatgtactcg 182
Query: 315 ccgtagtagagcgtgtcgagcgcgaagctgccgttccactcgagccagccggccgggtcg 374
||||||||||||||||||||||||||| |||||| ||||||||||||||| |||||| ||
Sbjct: 181 ccgtagtagagcgtgtcgagcgcgaagttgccgtcccactcgagccagcccgccggggcg 122
Query: 375 accagcgagtccagctccgactgcaggtacaccgtgcgggagtactgcttccatgggcgg 434
| |||||||||||||||||||||||| | |||||||||||||||||||||||||| |||
Sbjct: 121 atgagcgagtccagctccgactgcaggaaaaccgtgcgggagtactgcttccatggccgg 62
Query: 435 cccaggtaggtcttgg 450
|| |||||||||||||
Sbjct: 61 ccgaggtaggtcttgg 46
>gb|CN125758.1|CN125758 RHOH1_13_D02.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_13_D02_A002 3', mRNA sequence
Length = 689
Score = 452 bits (228), Expect = e-125
Identities = 294/316 (93%)
Strand = Plus / Minus
Query: 135 ccgccgcgcgctcacaagccggtggtgaaggggatggacgtgccggcgagccagaggtcg 194
|||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 475 ccgccgtgcgctcacaagccggtggtgaaggggatggacgtgccggcgagccagacgtcc 416
Query: 195 ccgtcgatgaagttgccaacggtgaaggcgctggcctcggcggcgctggtgatgacgcgg 254
|||||||||||| ||| |||||||| |||||||||||||| |||||||||||||| |||
Sbjct: 415 ccgtcgatgaaggagccgacggtgaacgcgctggcctcggccgcgctggtgatgacacgg 356
Query: 255 taccccttccacttgacccgcccggacgtgccggcgccgggccccgtgttcatgtactcg 314
|||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||
Sbjct: 355 taccccttccacttgacccggccggaggttccggcgccgggccccgtgttcatgtactcg 296
Query: 315 ccgtagtagagcgtgtcgagcgcgaagctgccgttccactcgagccagccggccgggtcg 374
||||||||||||||||||||||||||| |||||| ||||||||||||||| |||||| ||
Sbjct: 295 ccgtagtagagcgtgtcgagcgcgaagttgccgtcccactcgagccagcccgccggggcg 236
Query: 375 accagcgagtccagctccgactgcaggtacaccgtgcgggagtactgcttccatgggcgg 434
| |||||||||||||||||||||||| | |||||||||||||||||||||||||| |||
Sbjct: 235 atgagcgagtccagctccgactgcaggaaaaccgtgcgggagtactgcttccatggccgg 176
Query: 435 cccaggtaggtcttgg 450
|| |||||||||||||
Sbjct: 175 ccgaggtaggtcttgg 160
>gb|CD228200.1|CD228200 CCC1_6_B10.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_6_B10_A007 3', mRNA sequence
Length = 639
Score = 444 bits (224), Expect = e-123
Identities = 293/316 (92%)
Strand = Plus / Minus
Query: 135 ccgccgcgcgctcacaagccggtggtgaaggggatggacgtgccggcgagccagaggtcg 194
|||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 462 ccgccgtgcgctcacaagccggtggtgaaggggatggacgtgccggcgagccagacgtcc 403
Query: 195 ccgtcgatgaagttgccaacggtgaaggcgctggcctcggcggcgctggtgatgacgcgg 254
|||||||||||| ||| |||||||| |||||||||||||| |||||||||||||| |||
Sbjct: 402 ccgtcgatgaaggagccgacggtgaacgcgctggcctcggccgcgctggtgatgacacgg 343
Query: 255 taccccttccacttgacccgcccggacgtgccggcgccgggccccgtgttcatgtactcg 314
|||||||||||| ||||||| ||||| || ||||||||||||||||||||||||||||||
Sbjct: 342 taccccttccacctgacccggccggaggttccggcgccgggccccgtgttcatgtactcg 283
Query: 315 ccgtagtagagcgtgtcgagcgcgaagctgccgttccactcgagccagccggccgggtcg 374
||||||||||||||||||||||||||| |||||| ||||||||||||||| |||||| ||
Sbjct: 282 ccgtagtagagcgtgtcgagcgcgaagttgccgtcccactcgagccagcccgccggggcg 223
Query: 375 accagcgagtccagctccgactgcaggtacaccgtgcgggagtactgcttccatgggcgg 434
| |||||||||||||||||||||||| | |||||||||||||||||||||||||| |||
Sbjct: 222 atgagcgagtccagctccgactgcaggaaaaccgtgcgggagtactgcttccatggccgg 163
Query: 435 cccaggtaggtcttgg 450
|| |||||||||||||
Sbjct: 162 ccgaggtaggtcttgg 147
>gb|CX609223.1|CX609223 ANR1_11_H09.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_11_H09_A002 3', mRNA sequence
Length = 647
Score = 444 bits (224), Expect = e-123
Identities = 293/316 (92%)
Strand = Plus / Minus
Query: 135 ccgccgcgcgctcacaagccggtggtgaaggggatggacgtgccggcgagccagaggtcg 194
|||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 462 ccgccgtgcgctcacaagccggtggtgaaggggatggacgtgccggcgagccagacgtcc 403
Query: 195 ccgtcgatgaagttgccaacggtgaaggcgctggcctcggcggcgctggtgatgacgcgg 254
|||||||||||| ||| || ||||| |||||||||||||| |||||||||||||| |||
Sbjct: 402 ccgtcgatgaaggagccgacagtgaacgcgctggcctcggccgcgctggtgatgacacgg 343
Query: 255 taccccttccacttgacccgcccggacgtgccggcgccgggccccgtgttcatgtactcg 314
|||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||
Sbjct: 342 taccccttccacttgacccggccggaggttccggcgccgggccccgtgttcatgtactcg 283
Query: 315 ccgtagtagagcgtgtcgagcgcgaagctgccgttccactcgagccagccggccgggtcg 374
||||||||||||||||||||||||||| |||||| ||||||||||||||| |||||| ||
Sbjct: 282 ccgtagtagagcgtgtcgagcgcgaagttgccgtcccactcgagccagcccgccggggcg 223
Query: 375 accagcgagtccagctccgactgcaggtacaccgtgcgggagtactgcttccatgggcgg 434
| |||||||||||||||||||||||| | |||||||||||||||||||||||||| |||
Sbjct: 222 atgagcgagtccagctccgactgcaggaaaaccgtgcgggagtactgcttccatggccgg 163
Query: 435 cccaggtaggtcttgg 450
|| |||||||||||||
Sbjct: 162 ccgaggtaggtcttgg 147
>gb|CD231524.1|CD231524 SS1_22_A05.b1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_22_A05_A012 3', mRNA sequence
Length = 520
Score = 381 bits (192), Expect = e-104
Identities = 285/316 (90%)
Strand = Plus / Minus
Query: 135 ccgccgcgcgctcacaagccggtggtgaaggggatggacgtgccggcgagccagaggtcg 194
|||||| ||||||||||| |||||||||||||||||||||||||||| ||||| | |||
Sbjct: 334 ccgccgtgcgctcacaagacggtggtgaaggggatggacgtgccggctagccaaacgtcc 275
Query: 195 ccgtcgatgaagttgccaacggtgaaggcgctggcctcggcggcgctggtgatgacgcgg 254
|||||||||||| ||| |||||||| ||||||||||||| |||||||||||||| |||
Sbjct: 274 ccgtcgatgaaggagccgacggtgaacgcgctggcctcgggcgcgctggtgatgacacgg 215
Query: 255 taccccttccacttgacccgcccggacgtgccggcgccgggccccgtgttcatgtactcg 314
|||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||
Sbjct: 214 taccccttccacttgacccggccggaggttccggcgccgggccccgtgttcatgtactcc 155
Query: 315 ccgtagtagagcgtgtcgagcgcgaagctgccgttccactcgagccagccggccgggtcg 374
||| ||||||||||||||||||||||| |||||| |||||||||||| || |||||| ||
Sbjct: 154 ccggagtagagcgtgtcgagcgcgaagttgccgtcccactcgagccatcccgccggggcg 95
Query: 375 accagcgagtccagctccgactgcaggtacaccgtgcgggagtactgcttccatgggcgg 434
| ||||||||||||||| |||||| | | |||||||||||||||||||||||||| |||
Sbjct: 94 atgagcgagtccagctcctactgcatgaaaaccgtgcgggagtactgcttccatggccgg 35
Query: 435 cccaggtaggtcttgg 450
|| |||||||||||||
Sbjct: 34 ccgaggtaggtcttgg 19
>gb|CW216948.1|CW216948 104_650_11195395_148_37130_080 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11195395, DNA
sequence
Length = 693
Score = 355 bits (179), Expect = 2e-096
Identities = 236/255 (92%)
Strand = Plus / Plus
Query: 135 ccgccgcgcgctcacaagccggtggtgaaggggatggacgtgccggcgagccagaggtcg 194
|||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 439 ccgccgtgcgctcacaagccggtggtgaaggggatggacgtgccggcgagccagacgtcc 498
Query: 195 ccgtcgatgaagttgccaacggtgaaggcgctggcctcggcggcgctggtgatgacgcgg 254
|||||||||||| ||| |||||||| |||||||||||||| |||||||||||||| |||
Sbjct: 499 ccgtcgatgaaggagccgacggtgaacgcgctggcctcggccgcgctggtgatgacacgg 558
Query: 255 taccccttccacttgacccgcccggacgtgccggcgccgggccccgtgttcatgtactcg 314
|||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||
Sbjct: 559 taccccttccacttgacccggccggaggttccggcgccgggccccgtgttcatgtactcg 618
Query: 315 ccgtagtagagcgtgtcgagcgcgaagctgccgttccactcgagccagccggccgggtcg 374
||||||||||||||||||||||||||| |||||| |||||||||||||| |||||| ||
Sbjct: 619 ccgtagtagagcgtgtcgagcgcgaagttgccgtctcactcgagccagcccgccggggcg 678
Query: 375 accagcgagtccagc 389
| ||||||||||||
Sbjct: 679 atgagcgagtccagc 693
>gb|CD236278.1|CD236278 SS1_33_D08.b1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_33_D08_A012 3', mRNA sequence
Length = 350
Score = 258 bits (130), Expect = 4e-067
Identities = 172/186 (92%)
Strand = Plus / Minus
Query: 135 ccgccgcgcgctcacaagccggtggtgaaggggatggacgtgccggcgagccagaggtcg 194
|||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct: 186 ccgccgtgcgctcacaagccggtggtgaaggggatggatgtgccggcgagccagacgtcc 127
Query: 195 ccgtcgatgaagttgccaacggtgaaggcgctggcctcggcggcgctggtgatgacgcgg 254
|||||||||||| ||| |||||||| |||||||||||||| |||||||||||||| |||
Sbjct: 126 ccgtcgatgaaggagccgacggtgaacgcgctggcctcggccgcgctggtgatgacacgg 67
Query: 255 taccccttccacttgacccgcccggacgtgccggcgccgggccccgtgttcatgtactcg 314
||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||
Sbjct: 66 gaccccttccacttgacccggccggaggttccggcgccgggccccgtgttcatgtactcg 7
Query: 315 ccgtag 320
||||||
Sbjct: 6 ccgtag 1
>gb|CW172749.1|CW172749 104_584_11156458_148_36543_045 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11156458, DNA
sequence
Length = 626
Score = 129 bits (65), Expect = 2e-028
Identities = 89/97 (91%)
Strand = Plus / Minus
Query: 354 tcgagccagccggccgggtcgaccagcgagtccagctccgactgcaggtacaccgtgcgg 413
||||||||||| |||||| ||| |||||||||||||||||||||||| | |||||||||
Sbjct: 626 tcgagccagcccgccggggcgatgagcgagtccagctccgactgcaggaaaaccgtgcgg 567
Query: 414 gagtactgcttccatgggcggcccaggtaggtcttgg 450
||||||||||||||||| ||||| |||||||||||||
Sbjct: 566 gagtactgcttccatggccggccgaggtaggtcttgg 530
>gb|CW112880.1|CW112880 104_486_11105136_116_34548_082 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11105136, DNA
sequence
Length = 396
Score = 95.6 bits (48), Expect = 3e-018
Identities = 57/60 (95%)
Strand = Plus / Minus
Query: 302 gttcatgtactcgccgtagtagagcgtgtcgagcgcgaagctgccgttccactcgagcca 361
||||||||||||| ||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct: 141 gttcatgtactcggcgtagtatagcgtgtcgagcgcgaaggtgccgttccactcgagcca 82
>gb|CW266135.1|CW266135 104_735_11232263_148_35265_084 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11232263, DNA
sequence
Length = 623
Score = 95.6 bits (48), Expect = 3e-018
Identities = 57/60 (95%)
Strand = Plus / Plus
Query: 302 gttcatgtactcgccgtagtagagcgtgtcgagcgcgaagctgccgttccactcgagcca 361
||||||||||||| ||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct: 235 gttcatgtactcggcgtagtatagcgtgtcgagcgcgaaggtgccgttccactcgagcca 294
>gb|CW386938.1|CW386938 fsbb001f071b07f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f071b07, DNA
sequence
Length = 617
Score = 95.6 bits (48), Expect = 3e-018
Identities = 57/60 (95%)
Strand = Plus / Minus
Query: 302 gttcatgtactcgccgtagtagagcgtgtcgagcgcgaagctgccgttccactcgagcca 361
||||||||||||| ||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct: 581 gttcatgtactcggcgtagtatagcgtgtcgagcgcgaaggtgccgttccactcgagcca 522
>gb|CX613760.1|CX613760 GABR1_10_C01.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_10_C01_A002 3', mRNA sequence
Length = 257
Score = 95.6 bits (48), Expect = 3e-018
Identities = 51/52 (98%)
Strand = Plus / Minus
Query: 135 ccgccgcgcgctcacaagccggtggtgaaggggatggacgtgccggcgagcc 186
|||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52 ccgccgtgcgctcacaagccggtggtgaaggggatggacgtgccggcgagcc 1
>gb|BF421136.1|BF421136 FM1_6_H03.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 399
Score = 91.7 bits (46), Expect = 5e-017
Identities = 70/78 (89%)
Strand = Plus / Minus
Query: 277 cggacgtgccggcgccgggccccgtgttcatgtactcgccgtagtagagcgtgtcgagcg 336
|||| ||| ||||||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct: 78 cggaggtgtcggcgccgggcccgcggttcatgtactcggcgtagtagagcgtgtcgagcg 19
Query: 337 cgaagctgccgttccact 354
||||| || |||||||||
Sbjct: 18 cgaaggtggcgttccact 1
>gb|CW349542.1|CW349542 fsbb001f010h01f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f010h01, DNA
sequence
Length = 640
Score = 89.7 bits (45), Expect = 2e-016
Identities = 108/129 (83%)
Strand = Plus / Minus
Query: 213 acggtgaaggcgctggcctcggcggcgctggtgatgacgcggtaccccttccacttgacc 272
||||||||| || |||||||||||||||||| |||||| || |||| ||||||||||
Sbjct: 275 acggtgaagttgccggcctcggcggcgctggtcatgacgtggaaccctggccacttgacc 216
Query: 273 cgcccggacgtgccggcgccgggccccgtgttcatgtactcgccgtagtagagcgtgtcg 332
| ||| |||||||||||| || ||||| ||||||| ||||||||||||||||||
Sbjct: 215 ctggcggcgacgccggcgccggggccggtgttgctgtactccccgtagtagagcgtgtcg 156
Query: 333 agcgcgaag 341
|||||||||
Sbjct: 155 agcgcgaag 147
>gb|CW441491.1|CW441491 fsbb001f160k16f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f160k16, DNA
sequence
Length = 538
Score = 89.7 bits (45), Expect = 2e-016
Identities = 108/129 (83%)
Strand = Plus / Plus
Query: 213 acggtgaaggcgctggcctcggcggcgctggtgatgacgcggtaccccttccacttgacc 272
||||||||| || |||||||||||||||||| |||||| || |||| ||||||||||
Sbjct: 96 acggtgaagttgccggcctcggcggcgctggtcatgacgtggaaccctggccacttgacc 155
Query: 273 cgcccggacgtgccggcgccgggccccgtgttcatgtactcgccgtagtagagcgtgtcg 332
| ||| |||||||||||| || ||||| ||||||| ||||||||||||||||||
Sbjct: 156 ctggcggcgacgccggcgccggggccggtgttgctgtactccccgtagtagagcgtgtcg 215
Query: 333 agcgcgaag 341
|||||||||
Sbjct: 216 agcgcgaag 224
>gb|CW484442.1|CW484442 fsbb001f246j11k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f246j11, DNA
sequence
Length = 735
Score = 89.7 bits (45), Expect = 2e-016
Identities = 108/129 (83%)
Strand = Plus / Plus
Query: 213 acggtgaaggcgctggcctcggcggcgctggtgatgacgcggtaccccttccacttgacc 272
||||||||| || |||||||||||||||||| |||||| || |||| ||||||||||
Sbjct: 552 acggtgaagttgccggcctcggcggcgctggtcatgacgtggaaccctggccacttgacc 611
Query: 273 cgcccggacgtgccggcgccgggccccgtgttcatgtactcgccgtagtagagcgtgtcg 332
| ||| |||||||||||| || ||||| ||||||| ||||||||||||||||||
Sbjct: 612 ctggcggcgacgccggcgccggggccggtgttgctgtactccccgtagtagagcgtgtcg 671
Query: 333 agcgcgaag 341
|||||||||
Sbjct: 672 agcgcgaag 680
>gb|CW221063.1|CW221063 104_656_11197697_148_37167_079 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11197697, DNA
sequence
Length = 667
Score = 85.7 bits (43), Expect = 3e-015
Identities = 115/139 (82%)
Strand = Plus / Plus
Query: 307 tgtactcgccgtagtagagcgtgtcgagcgcgaagctgccgttccactcgagccagccgg 366
|||||||| ||||| |||||||| ||||||| || ||||| |||| | ||| ||||
Sbjct: 336 tgtactcggcgtagaagagcgtgctgagcgcgtagtcgccgtcccacggcatccacccgg 395
Query: 367 ccgggtcgaccagcgagtccagctccgactgcaggtacaccgtgcgggagtactgcttcc 426
| |||||||| |||| ||||| ||||||||||| | ||||||||||||||| ||||||
Sbjct: 396 cggggtcgacgagcgcgtccacctccgactgcatgatcaccgtgcgggagtagagcttcc 455
Query: 427 atgggcggcccaggtaggt 445
|||| || |||||||||||
Sbjct: 456 atggccgccccaggtaggt 474
>gb|CW355045.1|CW355045 fsbb001f019i07f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f019i07, DNA
sequence
Length = 717
Score = 85.7 bits (43), Expect = 3e-015
Identities = 115/139 (82%)
Strand = Plus / Minus
Query: 307 tgtactcgccgtagtagagcgtgtcgagcgcgaagctgccgttccactcgagccagccgg 366
|||||||| ||||| |||||||| ||||||| || ||||| |||| | ||| ||||
Sbjct: 495 tgtactcggcgtagaagagcgtgctgagcgcgtagtcgccgtcccacggcatccacccgg 436
Query: 367 ccgggtcgaccagcgagtccagctccgactgcaggtacaccgtgcgggagtactgcttcc 426
| |||||||| |||| ||||| ||||||||||| | ||||||||||||||| ||||||
Sbjct: 435 cggggtcgacgagcgcgtccacctccgactgcatgatcaccgtgcgggagtagagcttcc 376
Query: 427 atgggcggcccaggtaggt 445
|||| || |||||||||||
Sbjct: 375 atggccgccccaggtaggt 357
>gb|CW355046.1|CW355046 fsbb001f019i07k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f019i07, DNA
sequence
Length = 732
Score = 85.7 bits (43), Expect = 3e-015
Identities = 115/139 (82%)
Strand = Plus / Plus
Query: 307 tgtactcgccgtagtagagcgtgtcgagcgcgaagctgccgttccactcgagccagccgg 366
|||||||| ||||| |||||||| ||||||| || ||||| |||| | ||| ||||
Sbjct: 550 tgtactcggcgtagaagagcgtgctgagcgcgtagtcgccgtcccacggcatccacccgg 609
Query: 367 ccgggtcgaccagcgagtccagctccgactgcaggtacaccgtgcgggagtactgcttcc 426
| |||||||| |||| ||||| ||||||||||| | ||||||||||||||| ||||||
Sbjct: 610 cggggtcgacgagcgcgtccacctccgactgcatgatcaccgtgcgggagtagagcttcc 669
Query: 427 atgggcggcccaggtaggt 445
|||| || |||||||||||
Sbjct: 670 atggccgccccaggtaggt 688
>gb|BE361683.1|BE361683 DG1_81_F09.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 592
Score = 85.7 bits (43), Expect = 3e-015
Identities = 115/139 (82%)
Strand = Plus / Minus
Query: 307 tgtactcgccgtagtagagcgtgtcgagcgcgaagctgccgttccactcgagccagccgg 366
|||||||| ||||| |||||||| ||||||| || ||||| |||| | ||| ||||
Sbjct: 195 tgtactcggcgtagaagagcgtgctgagcgcgtagtcgccgtcccacggcatccacccgg 136
Query: 367 ccgggtcgaccagcgagtccagctccgactgcaggtacaccgtgcgggagtactgcttcc 426
| |||||||| |||| ||||| ||||||||||| | ||||||||||||||| ||||||
Sbjct: 135 cggggtcgacgagcgcgtccacctccgactgcatgatcaccgtgcgggagtagagcttcc 76
Query: 427 atgggcggcccaggtaggt 445
|||| || |||||||||||
Sbjct: 75 atggccgccccaggtaggt 57
>gb|CW369334.1|CW369334 fsbb001f043l06f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f043l06, DNA
sequence
Length = 712
Score = 77.8 bits (39), Expect = 8e-013
Identities = 72/83 (86%)
Strand = Plus / Minus
Query: 363 ccggccgggtcgaccagcgagtccagctccgactgcaggtacaccgtgcgggagtactgc 422
||||| |||||||| |||| ||||| ||||||||||| | ||||||||||||||| ||
Sbjct: 662 ccggcggggtcgacgagcgcgtccacctccgactgcatgatcaccgtgcgggagtagagc 603
Query: 423 ttccatgggcggcccaggtaggt 445
|||||||| || |||||||||||
Sbjct: 602 ttccatggccgccccaggtaggt 580
>gb|CW039718.1|CW039718 104_272_10505656_114_30389 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10505656, DNA
sequence
Length = 399
Score = 69.9 bits (35), Expect = 2e-010
Identities = 47/51 (92%)
Strand = Plus / Plus
Query: 288 gcgccgggccccgtgttcatgtactcgccgtagtagagcgtgtcgagcgcg 338
||||||||||| ||||||||||||||||| |||||||| |||||||||||
Sbjct: 110 gcgccgggcccgttgttcatgtactcgccgaagtagagcctgtcgagcgcg 160
>gb|CW172299.1|CW172299 104_583_11156215_148_36534_024 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11156215, DNA
sequence
Length = 531
Score = 63.9 bits (32), Expect = 1e-008
Identities = 50/56 (89%)
Strand = Plus / Plus
Query: 286 cggcgccgggccccgtgttcatgtactcgccgtagtagagcgtgtcgagcgcgaag 341
||||||| ||||| |||| |||||||| ||||||||||||||||||||||||||
Sbjct: 296 cggcgcccggcccgctgttgttgtactcggcgtagtagagcgtgtcgagcgcgaag 351
>gb|CW276959.1|CW276959 104_750_11405768_116_35395_018 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11405768, DNA
sequence
Length = 617
Score = 61.9 bits (31), Expect = 5e-008
Identities = 79/95 (83%)
Strand = Plus / Plus
Query: 267 ttgacccgcccggacgtgccggcgccgggccccgtgttcatgtactcgccgtagtagagc 326
|||||||| |||| ||| |||||||||||||| |||| |||||| |||||| |||||
Sbjct: 213 ttgacccggccggcggtggcggcgccgggcccctcgttctggtactccccgtagaagagc 272
Query: 327 gtgtcgagcgcgaagctgccgttccactcgagcca 361
|| | |||||||||| |||| ||||||||||||
Sbjct: 273 gtcttgagcgcgaagtccccgtcccactcgagcca 307
>gb|CW339306.1|CW339306 104_840_11485203_148_36139_016 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11485203, DNA
sequence
Length = 669
Score = 61.9 bits (31), Expect = 5e-008
Identities = 37/39 (94%)
Strand = Plus / Minus
Query: 409 tgcgggagtactgcttccatgggcggcccaggtaggtct 447
|||||||||||||||||||||| ||||| ||||||||||
Sbjct: 669 tgcgggagtactgcttccatggccggccgaggtaggtct 631
>gb|AW746386.1|AW746386 WS1_49_G01.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 561
Score = 61.9 bits (31), Expect = 5e-008
Identities = 49/55 (89%)
Strand = Plus / Minus
Query: 286 cggcgccgggccccgtgttcatgtactcgccgtagtagagcgtgtcgagcgcgaa 340
||||||| ||||| |||| |||||||| |||||||||||||||||||||||||
Sbjct: 185 cggcgcccggcccgctgttgttgtactcggcgtagtagagcgtgtcgagcgcgaa 131
>gb|AW924063.1|AW924063 WS1_49_G01.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 565
Score = 61.9 bits (31), Expect = 5e-008
Identities = 49/55 (89%)
Strand = Plus / Minus
Query: 286 cggcgccgggccccgtgttcatgtactcgccgtagtagagcgtgtcgagcgcgaa 340
||||||| ||||| |||| |||||||| |||||||||||||||||||||||||
Sbjct: 513 cggcgcccggcccgctgttgttgtactcggcgtagtagagcgtgtcgagcgcgaa 459
>gb|CX608981.1|CX608981 ANR1_10_A01.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_10_A01_A002 3', mRNA sequence
Length = 599
Score = 61.9 bits (31), Expect = 5e-008
Identities = 79/95 (83%)
Strand = Plus / Minus
Query: 267 ttgacccgcccggacgtgccggcgccgggccccgtgttcatgtactcgccgtagtagagc 326
|||||||| |||| ||| |||||||||||||| |||| |||||| |||||| |||||
Sbjct: 356 ttgacccggccggcggtggcggcgccgggcccctcgttctggtactccccgtagaagagc 297
Query: 327 gtgtcgagcgcgaagctgccgttccactcgagcca 361
|| | |||||||||| |||| ||||||||||||
Sbjct: 296 gtcttgagcgcgaagtccccgtcccactcgagcca 262
>gb|CN138851.1|CN138851 OX1_14_H09.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_14_H09_A002 3', mRNA sequence
Length = 491
Score = 56.0 bits (28), Expect = 3e-006
Identities = 49/56 (87%)
Strand = Plus / Minus
Query: 286 cggcgccgggccccgtgttcatgtactcgccgtagtagagcgtgtcgagcgcgaag 341
||||||| ||||| |||| |||||||| |||| |||||||||||||||||||||
Sbjct: 301 cggcgcccggcccgctgttgttgtactcggcgtactagagcgtgtcgagcgcgaag 246
>gb|CX606104.1|CX606104 ANR1_1_D12.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_1_D12_A002 3', mRNA sequence
Length = 615
Score = 56.0 bits (28), Expect = 3e-006
Identities = 49/56 (87%)
Strand = Plus / Minus
Query: 286 cggcgccgggccccgtgttcatgtactcgccgtagtagagcgtgtcgagcgcgaag 341
||||||| ||||| |||| |||||||| |||| |||||||||||||||||||||
Sbjct: 199 cggcgcccggcccgctgttgttgtactcggcgtaatagagcgtgtcgagcgcgaag 144
>gb|CD203831.1|CD203831 HS1_2_G09.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA clone
HS1_2_G09_A012 3', mRNA sequence
Length = 565
Score = 54.0 bits (27), Expect = 1e-005
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 307 tgtactcgccgtagtagagcgtgtcgagcgcgaag 341
|||||||| ||||||| ||||||||||||||||||
Sbjct: 129 tgtactcggcgtagtaaagcgtgtcgagcgcgaag 95
>gb|CW075985.1|CW075985 104_364_10810037_114_31802_101 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10810037, DNA
sequence
Length = 657
Score = 52.0 bits (26), Expect = 5e-005
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 308 gtactcgccgtagtagagcgtgtcgagcgcgaag 341
||||||||||||||||||||| | ||||||||||
Sbjct: 121 gtactcgccgtagtagagcgtcttgagcgcgaag 88
Score = 42.1 bits (21), Expect = 0.044
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 399 aggtacaccgtgcgggagtactgcttcca 427
||||||||||| |||||||||| ||||||
Sbjct: 30 aggtacaccgtccgggagtactccttcca 2
>gb|CW084629.1|CW084629 104_427_10945909_116_32511_055 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10945909, DNA
sequence
Length = 643
Score = 52.0 bits (26), Expect = 5e-005
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 308 gtactcgccgtagtagagcgtgtcgagcgcgaag 341
||||||||||||||||||||| | ||||||||||
Sbjct: 451 gtactcgccgtagtagagcgtcttgagcgcgaag 484
Score = 42.1 bits (21), Expect = 0.044
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 399 aggtacaccgtgcgggagtactgcttcca 427
||||||||||| |||||||||| ||||||
Sbjct: 542 aggtacaccgtccgggagtactccttcca 570
>gb|CW350958.1|CW350958 fsbb001f012i07k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f012i07, DNA
sequence
Length = 555
Score = 52.0 bits (26), Expect = 5e-005
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 308 gtactcgccgtagtagagcgtgtcgagcgcgaag 341
||||||||||||||||||||| | ||||||||||
Sbjct: 173 gtactcgccgtagtagagcgtcttgagcgcgaag 206
Score = 48.1 bits (24), Expect = 7e-004
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 399 aggtacaccgtgcgggagtactgcttccatgggcggcccaggta 442
||||||||||| |||||||||| |||||| || || ||||||||
Sbjct: 264 aggtacaccgtccgggagtactccttccagggacgtcccaggta 307
>gb|CW481932.1|CW481932 fsbb001f241m07f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f241m07, DNA
sequence
Length = 408
Score = 52.0 bits (26), Expect = 5e-005
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 308 gtactcgccgtagtagagcgtgtcgagcgcgaag 341
||||||||||||||||||||| | ||||||||||
Sbjct: 374 gtactcgccgtagtagagcgtcttgagcgcgaag 341
Score = 48.1 bits (24), Expect = 7e-004
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 399 aggtacaccgtgcgggagtactgcttccatgggcggcccaggta 442
||||||||||| |||||||||| |||||| || || ||||||||
Sbjct: 283 aggtacaccgtccgggagtactccttccagggacgtcccaggta 240
>gb|CW481933.1|CW481933 fsbb001f241m07k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f241m07, DNA
sequence
Length = 734
Score = 52.0 bits (26), Expect = 5e-005
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 308 gtactcgccgtagtagagcgtgtcgagcgcgaagctgccgttccac 353
||||||||||||||||||||| | ||||||||| | |||||||||
Sbjct: 676 gtactcgccgtagtagagcgtcttgagcgcgaaagtcccgttccac 721
>gb|BG355811.1|BG355811 EM1_17_A06.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 369
Score = 52.0 bits (26), Expect = 5e-005
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 308 gtactcgccgtagtagagcgtgtcgagcgcgaag 341
||||||||||||||||||||| | ||||||||||
Sbjct: 298 gtactcgccgtagtagagcgtcttgagcgcgaag 265
Score = 48.1 bits (24), Expect = 7e-004
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 399 aggtacaccgtgcgggagtactgcttccatgggcggcccaggta 442
||||||||||| |||||||||| |||||| || || ||||||||
Sbjct: 207 aggtacaccgtccgggagtactccttccagggacgtcccaggta 164
>gb|CF488110.1|CF488110 POL1_47_G11.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_47_G11_A002 5', mRNA sequence
Length = 686
Score = 52.0 bits (26), Expect = 5e-005
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 308 gtactcgccgtagtagagcgtgtcgagcgcgaag 341
||||||||||||||||||||| | ||||||||||
Sbjct: 264 gtactcgccgtagtagagcgtcttgagcgcgaag 297
>gb|CW084628.1|CW084628 104_427_10945909_114_32507_055 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10945909, DNA
sequence
Length = 604
Score = 48.1 bits (24), Expect = 7e-004
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 399 aggtacaccgtgcgggagtactgcttccatgggcggcccaggta 442
||||||||||| |||||||||| |||||| || || ||||||||
Sbjct: 604 aggtacaccgtccgggagtactccttccagggacgtcccaggta 561
>gb|CW474162.1|CW474162 fsbb001f229n21k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f229n21, DNA
sequence
Length = 496
Score = 46.1 bits (23), Expect = 0.003
Identities = 44/51 (86%)
Strand = Plus / Plus
Query: 311 ctcgccgtagtagagcgtgtcgagcgcgaagctgccgttccactcgagcca 361
|||| ||||| ||||||| ||||| ||||| ||||||||||||||||||
Sbjct: 382 ctcggcgtagaagagcgtctcgaggccgaagtcgccgttccactcgagcca 432
>gb|BG357676.1|BG357676 OV2_32_H07.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 653
Score = 46.1 bits (23), Expect = 0.003
Identities = 44/51 (86%)
Strand = Plus / Minus
Query: 311 ctcgccgtagtagagcgtgtcgagcgcgaagctgccgttccactcgagcca 361
|||| ||||| ||||||| ||||| ||||| ||||||||||||||||||
Sbjct: 282 ctcggcgtagaagagcgtctcgaggccgaagtcgccgttccactcgagcca 232
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 217,554
Number of Sequences: 832831
Number of extensions: 217554
Number of successful extensions: 54639
Number of sequences better than 0.5: 45
Number of HSP's better than 0.5 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 54534
Number of HSP's gapped (non-prelim): 95
length of query: 457
length of database: 491,359,669
effective HSP length: 19
effective length of query: 438
effective length of database: 475,535,880
effective search space: 208284715440
effective search space used: 208284715440
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)