BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3204680.2.2
(534 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BE355122.1|BE355122 DG1_113_E02.g1_A002 Dark Grown 1 (DG... 632 e-180
gb|BF421115.1|BF421115 FM1_6_E10.g1_A003 Floral-Induced Mer... 632 e-180
gb|BF586322.1|BF586322 FM1_27_D12.g1_A003 Floral-Induced Me... 632 e-180
gb|BG051663.1|BG051663 FM1_59_F04.g1_A003 Floral-Induced Me... 632 e-180
gb|BG103577.1|BG103577 RHIZ2_38_C03.g1_A003 Rhizome2 (RHIZ2... 632 e-180
gb|BG158631.1|BG158631 RHIZ2_43_A07.g1_A003 Rhizome2 (RHIZ2... 632 e-180
gb|BG158640.1|BG158640 RHIZ2_43_B07.g1_A003 Rhizome2 (RHIZ2... 632 e-180
gb|BG158641.1|BG158641 RHIZ2_43_B08.g1_A003 Rhizome2 (RHIZ2... 632 e-180
gb|BG240899.1|BG240899 OV1_39_F06.g1_A002 Ovary 1 (OV1) Sor... 632 e-180
gb|CB928935.1|CB928935 ABA1_38_H01.b1_A012 Abscisic acid-tr... 628 e-178
gb|CF482017.1|CF482017 POL1_76_C05.b1_A002 Pollen Sorghum b... 624 e-177
gb|BE355151.1|BE355151 DG1_113_D02.g1_A002 Dark Grown 1 (DG... 620 e-176
gb|BG356536.1|BG356536 EM1_23_F09.g1_A002 Embryo 1 (EM1) So... 618 e-175
gb|BG463356.1|BG463356 EM1_48_E07.g1_A002 Embryo 1 (EM1) So... 618 e-175
gb|BF421493.1|BF421493 FM1_8_D10.g1_A003 Floral-Induced Mer... 617 e-175
gb|BF421116.1|BF421116 FM1_6_E11.g1_A003 Floral-Induced Mer... 609 e-172
gb|CB924928.1|CB924928 ABA1_29_B08.b1_A012 Abscisic acid-tr... 609 e-172
gb|BF421106.1|BF421106 FM1_6_D11.g1_A003 Floral-Induced Mer... 601 e-170
gb|BF588419.1|BF588419 FM1_36_D09.g1_A003 Floral-Induced Me... 601 e-170
gb|BF588427.1|BF588427 FM1_36_E06.g1_A003 Floral-Induced Me... 575 e-162
gb|BG560788.1|BG560788 RHIZ2_64_G10.g1_A003 Rhizome2 (RHIZ2... 569 e-161
gb|BG558087.1|BG558087 RHIZ2_66_E12.g1_A003 Rhizome2 (RHIZ2... 565 e-159
gb|BG557719.1|BG557719 EM1_55_H11.g1_A002 Embryo 1 (EM1) So... 464 e-129
gb|U12195.1|SBU12195 Sorghum bicolor clone BADH1 betaine al... 448 e-124
gb|BG487960.1|BG487960 RHIZ2_61_D10.g1_A003 Rhizome2 (RHIZ2... 394 e-108
gb|BG559002.1|BG559002 RHIZ2_53_D03.g1_A003 Rhizome2 (RHIZ2... 339 2e-091
gb|CF771940.1|CF771940 DSBF1_26_D06.g9_A010 Drought-stresse... 317 6e-085
gb|CW377044.1|CW377044 fsbb001f055d03k0 Sorghum methylation... 182 2e-044
gb|CW377043.1|CW377043 fsbb001f055d03f0 Sorghum methylation... 167 1e-039
gb|BG158652.1|BG158652 RHIZ2_43_D02.g1_A003 Rhizome2 (RHIZ2... 139 3e-031
gb|CD222832.1|CD222832 CCC1_24_A06.b1_A007 Callus culture/c... 92 6e-017
gb|BG464774.1|BG464774 EM1_34_A03.g1_A002 Embryo 1 (EM1) So... 80 2e-013
gb|U12196.1|SBU12196 Sorghum bicolor clone BADH15 betaine a... 64 1e-008
gb|CW294731.1|CW294731 104_775_11415340_116_36233_004 Sorgh... 52 5e-005
>gb|BE355122.1|BE355122 DG1_113_E02.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 646
Score = 632 bits (319), Expect = e-180
Identities = 414/445 (93%), Gaps = 8/445 (1%)
Strand = Plus / Plus
Query: 4 cacatcaatggaaatttggagggaggaagtcttcggtccagtcctgtgtgttaaagaatt 63
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 170 cacatcaatggaaatctggagggaggaagtctttggtccagtcctgtgtgttaaagaatt 229
Query: 64 tagcactgaagatgaagccattgaactggccaatgatacacagtatggtttagctggtgc 123
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct: 230 tagcactgaagatgaagccattgaactggccaacgatacacagtatggtttggctggtgc 289
Query: 124 tgtaatttctggtgatcgtgagcgctgccagagattatctgaggagattgatgctggaat 183
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 290 tgtaatttctggtgatcgtgagcgctgccagagattatctgaggagatcgatgctggatg 349
Query: 184 tatctgggtaaactgctcacagccctgcttctgccaggctccctggggcggtaacaagcg 243
||||||||||||||||||||| |||||||||||||| ||||||||||| || ||||||||
Sbjct: 350 tatctgggtaaactgctcacaaccctgcttctgccaagctccctggggtgggaacaagcg 409
Query: 244 tagtggatttggacgtgagcttggagaagggggcattgataactacctgagcgtcaagca 303
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 cagtggatttggacgtgagcttggagaagggggcattgataactacctgagcgtcaagca 469
Query: 304 agtcacggagtacatctctgatgagccgtggggatggtatcgatccccctccaagctgta 363
||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||||||
Sbjct: 470 agtcacggagtacatctctgatgagccgtggggttggtaccaatccccctccaagctgta 529
Query: 364 aac-------tggcatgaaattttgtttgttccattagaataaatatatc-tcgatgcta 415
||| ||||| |||| |||| |||| |||||||||||||| ||| | ||||| |
Sbjct: 530 aacgagaaaatggcacgaaaacttgtctgtttcattagaataaataaatcttggatgcca 589
Query: 416 tacagaacgaacccgtgtatcaaat 440
|||||||||||||||||||||||||
Sbjct: 590 tacagaacgaacccgtgtatcaaat 614
>gb|BF421115.1|BF421115 FM1_6_E10.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 697
Score = 632 bits (319), Expect = e-180
Identities = 414/445 (93%), Gaps = 8/445 (1%)
Strand = Plus / Plus
Query: 4 cacatcaatggaaatttggagggaggaagtcttcggtccagtcctgtgtgttaaagaatt 63
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 213 cacatcaatggaaatctggagggaggaagtctttggtccagtcctgtgtgttaaagaatt 272
Query: 64 tagcactgaagatgaagccattgaactggccaatgatacacagtatggtttagctggtgc 123
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct: 273 tagcactgaagatgaagccattgaactggccaacgatacacagtatggtttggctggtgc 332
Query: 124 tgtaatttctggtgatcgtgagcgctgccagagattatctgaggagattgatgctggaat 183
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 333 tgtaatttctggtgatcgtgagcgctgccagagattatctgaggagatcgatgctggatg 392
Query: 184 tatctgggtaaactgctcacagccctgcttctgccaggctccctggggcggtaacaagcg 243
||||||||||||||||||||| |||||||||||||| ||||||||||| || ||||||||
Sbjct: 393 tatctgggtaaactgctcacaaccctgcttctgccaagctccctggggtgggaacaagcg 452
Query: 244 tagtggatttggacgtgagcttggagaagggggcattgataactacctgagcgtcaagca 303
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 cagtggatttggacgtgagcttggagaagggggcattgataactacctgagcgtcaagca 512
Query: 304 agtcacggagtacatctctgatgagccgtggggatggtatcgatccccctccaagctgta 363
||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||||||
Sbjct: 513 agtcacggagtacatctctgatgagccgtggggttggtaccaatccccctccaagctgta 572
Query: 364 aac-------tggcatgaaattttgtttgttccattagaataaatatatc-tcgatgcta 415
||| ||||| |||| |||| |||| |||||||||||||| ||| | ||||| |
Sbjct: 573 aacgagaaaatggcacgaaaacttgtctgtttcattagaataaataaatcttggatgcca 632
Query: 416 tacagaacgaacccgtgtatcaaat 440
|||||||||||||||||||||||||
Sbjct: 633 tacagaacgaacccgtgtatcaaat 657
>gb|BF586322.1|BF586322 FM1_27_D12.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 711
Score = 632 bits (319), Expect = e-180
Identities = 414/445 (93%), Gaps = 8/445 (1%)
Strand = Plus / Plus
Query: 4 cacatcaatggaaatttggagggaggaagtcttcggtccagtcctgtgtgttaaagaatt 63
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 227 cacatcaatggaaatctggagggaggaagtctttggtccagtcctgtgtgttaaagaatt 286
Query: 64 tagcactgaagatgaagccattgaactggccaatgatacacagtatggtttagctggtgc 123
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct: 287 tagcactgaagatgaagccattgaactggccaacgatacacagtatggtttggctggtgc 346
Query: 124 tgtaatttctggtgatcgtgagcgctgccagagattatctgaggagattgatgctggaat 183
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 347 tgtaatttctggtgatcgtgagcgctgccagagattatctgaggagatcgatgctggatg 406
Query: 184 tatctgggtaaactgctcacagccctgcttctgccaggctccctggggcggtaacaagcg 243
||||||||||||||||||||| |||||||||||||| ||||||||||| || ||||||||
Sbjct: 407 tatctgggtaaactgctcacaaccctgcttctgccaagctccctggggtgggaacaagcg 466
Query: 244 tagtggatttggacgtgagcttggagaagggggcattgataactacctgagcgtcaagca 303
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 cagtggatttggacgtgagcttggagaagggggcattgataactacctgagcgtcaagca 526
Query: 304 agtcacggagtacatctctgatgagccgtggggatggtatcgatccccctccaagctgta 363
||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||||||
Sbjct: 527 agtcacggagtacatctctgatgagccgtggggttggtaccaatccccctccaagctgta 586
Query: 364 aac-------tggcatgaaattttgtttgttccattagaataaatatatc-tcgatgcta 415
||| ||||| |||| |||| |||| |||||||||||||| ||| | ||||| |
Sbjct: 587 aacgagaaaatggcacgaaaacttgtctgtttcattagaataaataaatcttggatgcca 646
Query: 416 tacagaacgaacccgtgtatcaaat 440
|||||||||||||||||||||||||
Sbjct: 647 tacagaacgaacccgtgtatcaaat 671
>gb|BG051663.1|BG051663 FM1_59_F04.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 520
Score = 632 bits (319), Expect = e-180
Identities = 414/445 (93%), Gaps = 8/445 (1%)
Strand = Plus / Plus
Query: 4 cacatcaatggaaatttggagggaggaagtcttcggtccagtcctgtgtgttaaagaatt 63
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 34 cacatcaatggaaatctggagggaggaagtctttggtccagtcctgtgtgttaaagaatt 93
Query: 64 tagcactgaagatgaagccattgaactggccaatgatacacagtatggtttagctggtgc 123
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct: 94 tagcactgaagatgaagccattgaactggccaacgatacacagtatggtttggctggtgc 153
Query: 124 tgtaatttctggtgatcgtgagcgctgccagagattatctgaggagattgatgctggaat 183
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 154 tgtaatttctggtgatcgtgagcgctgccagagattatctgaggagatcgatgctggatg 213
Query: 184 tatctgggtaaactgctcacagccctgcttctgccaggctccctggggcggtaacaagcg 243
||||||||||||||||||||| |||||||||||||| ||||||||||| || ||||||||
Sbjct: 214 tatctgggtaaactgctcacaaccctgcttctgccaagctccctggggtgggaacaagcg 273
Query: 244 tagtggatttggacgtgagcttggagaagggggcattgataactacctgagcgtcaagca 303
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 cagtggatttggacgtgagcttggagaagggggcattgataactacctgagcgtcaagca 333
Query: 304 agtcacggagtacatctctgatgagccgtggggatggtatcgatccccctccaagctgta 363
||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||||||
Sbjct: 334 agtcacggagtacatctctgatgagccgtggggttggtaccaatccccctccaagctgta 393
Query: 364 aac-------tggcatgaaattttgtttgttccattagaataaatatatc-tcgatgcta 415
||| ||||| |||| |||| |||| |||||||||||||| ||| | ||||| |
Sbjct: 394 aacgagaaaatggcacgaaaacttgtctgtttcattagaataaataaatcttggatgcca 453
Query: 416 tacagaacgaacccgtgtatcaaat 440
|||||||||||||||||||||||||
Sbjct: 454 tacagaacgaacccgtgtatcaaat 478
>gb|BG103577.1|BG103577 RHIZ2_38_C03.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 612
Score = 632 bits (319), Expect = e-180
Identities = 414/445 (93%), Gaps = 8/445 (1%)
Strand = Plus / Plus
Query: 4 cacatcaatggaaatttggagggaggaagtcttcggtccagtcctgtgtgttaaagaatt 63
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 128 cacatcaatggaaatctggagggaggaagtctttggtccagtcctgtgtgttaaagaatt 187
Query: 64 tagcactgaagatgaagccattgaactggccaatgatacacagtatggtttagctggtgc 123
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct: 188 tagcactgaagatgaagccattgaactggccaacgatacacagtatggtttggctggtgc 247
Query: 124 tgtaatttctggtgatcgtgagcgctgccagagattatctgaggagattgatgctggaat 183
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 248 tgtaatttctggtgatcgtgagcgctgccagagattatctgaggagatcgatgctggatg 307
Query: 184 tatctgggtaaactgctcacagccctgcttctgccaggctccctggggcggtaacaagcg 243
||||||||||||||||||||| |||||||||||||| ||||||||||| || ||||||||
Sbjct: 308 tatctgggtaaactgctcacaaccctgcttctgccaagctccctggggtgggaacaagcg 367
Query: 244 tagtggatttggacgtgagcttggagaagggggcattgataactacctgagcgtcaagca 303
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 cagtggatttggacgtgagcttggagaagggggcattgataactacctgagcgtcaagca 427
Query: 304 agtcacggagtacatctctgatgagccgtggggatggtatcgatccccctccaagctgta 363
||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||||||
Sbjct: 428 agtcacggagtacatctctgatgagccgtggggttggtaccaatccccctccaagctgta 487
Query: 364 aac-------tggcatgaaattttgtttgttccattagaataaatatatc-tcgatgcta 415
||| ||||| |||| |||| |||| |||||||||||||| ||| | ||||| |
Sbjct: 488 aacgagaaaatggcacgaaaacttgtctgtttcattagaataaataaatcttggatgcca 547
Query: 416 tacagaacgaacccgtgtatcaaat 440
|||||||||||||||||||||||||
Sbjct: 548 tacagaacgaacccgtgtatcaaat 572
>gb|BG158631.1|BG158631 RHIZ2_43_A07.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 549
Score = 632 bits (319), Expect = e-180
Identities = 414/445 (93%), Gaps = 8/445 (1%)
Strand = Plus / Plus
Query: 4 cacatcaatggaaatttggagggaggaagtcttcggtccagtcctgtgtgttaaagaatt 63
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 64 cacatcaatggaaatctggagggaggaagtctttggtccagtcctgtgtgttaaagaatt 123
Query: 64 tagcactgaagatgaagccattgaactggccaatgatacacagtatggtttagctggtgc 123
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct: 124 tagcactgaagatgaagccattgaactggccaacgatacacagtatggtttggctggtgc 183
Query: 124 tgtaatttctggtgatcgtgagcgctgccagagattatctgaggagattgatgctggaat 183
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 184 tgtaatttctggtgatcgtgagcgctgccagagattatctgaggagatcgatgctggatg 243
Query: 184 tatctgggtaaactgctcacagccctgcttctgccaggctccctggggcggtaacaagcg 243
||||||||||||||||||||| |||||||||||||| ||||||||||| || ||||||||
Sbjct: 244 tatctgggtaaactgctcacaaccctgcttctgccaagctccctggggtgggaacaagcg 303
Query: 244 tagtggatttggacgtgagcttggagaagggggcattgataactacctgagcgtcaagca 303
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 cagtggatttggacgtgagcttggagaagggggcattgataactacctgagcgtcaagca 363
Query: 304 agtcacggagtacatctctgatgagccgtggggatggtatcgatccccctccaagctgta 363
||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||||||
Sbjct: 364 agtcacggagtacatctctgatgagccgtggggttggtaccaatccccctccaagctgta 423
Query: 364 aac-------tggcatgaaattttgtttgttccattagaataaatatatc-tcgatgcta 415
||| ||||| |||| |||| |||| |||||||||||||| ||| | ||||| |
Sbjct: 424 aacgagaaaatggcacgaaaacttgtctgtttcattagaataaataaatcttggatgcca 483
Query: 416 tacagaacgaacccgtgtatcaaat 440
|||||||||||||||||||||||||
Sbjct: 484 tacagaacgaacccgtgtatcaaat 508
>gb|BG158640.1|BG158640 RHIZ2_43_B07.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 579
Score = 632 bits (319), Expect = e-180
Identities = 414/445 (93%), Gaps = 8/445 (1%)
Strand = Plus / Plus
Query: 4 cacatcaatggaaatttggagggaggaagtcttcggtccagtcctgtgtgttaaagaatt 63
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 95 cacatcaatggaaatctggagggaggaagtctttggtccagtcctgtgtgttaaagaatt 154
Query: 64 tagcactgaagatgaagccattgaactggccaatgatacacagtatggtttagctggtgc 123
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct: 155 tagcactgaagatgaagccattgaactggccaacgatacacagtatggtttggctggtgc 214
Query: 124 tgtaatttctggtgatcgtgagcgctgccagagattatctgaggagattgatgctggaat 183
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 215 tgtaatttctggtgatcgtgagcgctgccagagattatctgaggagatcgatgctggatg 274
Query: 184 tatctgggtaaactgctcacagccctgcttctgccaggctccctggggcggtaacaagcg 243
||||||||||||||||||||| |||||||||||||| ||||||||||| || ||||||||
Sbjct: 275 tatctgggtaaactgctcacaaccctgcttctgccaagctccctggggtgggaacaagcg 334
Query: 244 tagtggatttggacgtgagcttggagaagggggcattgataactacctgagcgtcaagca 303
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 cagtggatttggacgtgagcttggagaagggggcattgataactacctgagcgtcaagca 394
Query: 304 agtcacggagtacatctctgatgagccgtggggatggtatcgatccccctccaagctgta 363
||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||||||
Sbjct: 395 agtcacggagtacatctctgatgagccgtggggttggtaccaatccccctccaagctgta 454
Query: 364 aac-------tggcatgaaattttgtttgttccattagaataaatatatc-tcgatgcta 415
||| ||||| |||| |||| |||| |||||||||||||| ||| | ||||| |
Sbjct: 455 aacgagaaaatggcacgaaaacttgtctgtttcattagaataaataaatcttggatgcca 514
Query: 416 tacagaacgaacccgtgtatcaaat 440
|||||||||||||||||||||||||
Sbjct: 515 tacagaacgaacccgtgtatcaaat 539
>gb|BG158641.1|BG158641 RHIZ2_43_B08.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 548
Score = 632 bits (319), Expect = e-180
Identities = 414/445 (93%), Gaps = 8/445 (1%)
Strand = Plus / Plus
Query: 4 cacatcaatggaaatttggagggaggaagtcttcggtccagtcctgtgtgttaaagaatt 63
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 64 cacatcaatggaaatctggagggaggaagtctttggtccagtcctgtgtgttaaagaatt 123
Query: 64 tagcactgaagatgaagccattgaactggccaatgatacacagtatggtttagctggtgc 123
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct: 124 tagcactgaagatgaagccattgaactggccaacgatacacagtatggtttggctggtgc 183
Query: 124 tgtaatttctggtgatcgtgagcgctgccagagattatctgaggagattgatgctggaat 183
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 184 tgtaatttctggtgatcgtgagcgctgccagagattatctgaggagatcgatgctggatg 243
Query: 184 tatctgggtaaactgctcacagccctgcttctgccaggctccctggggcggtaacaagcg 243
||||||||||||||||||||| |||||||||||||| ||||||||||| || ||||||||
Sbjct: 244 tatctgggtaaactgctcacaaccctgcttctgccaagctccctggggtgggaacaagcg 303
Query: 244 tagtggatttggacgtgagcttggagaagggggcattgataactacctgagcgtcaagca 303
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 cagtggatttggacgtgagcttggagaagggggcattgataactacctgagcgtcaagca 363
Query: 304 agtcacggagtacatctctgatgagccgtggggatggtatcgatccccctccaagctgta 363
||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||||||
Sbjct: 364 agtcacggagtacatctctgatgagccgtggggttggtaccaatccccctccaagctgta 423
Query: 364 aac-------tggcatgaaattttgtttgttccattagaataaatatatc-tcgatgcta 415
||| ||||| |||| |||| |||| |||||||||||||| ||| | ||||| |
Sbjct: 424 aacgagaaaatggcacgaaaacttgtctgtttcattagaataaataaatcttggatgcca 483
Query: 416 tacagaacgaacccgtgtatcaaat 440
|||||||||||||||||||||||||
Sbjct: 484 tacagaacgaacccgtgtatcaaat 508
>gb|BG240899.1|BG240899 OV1_39_F06.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 496
Score = 632 bits (319), Expect = e-180
Identities = 414/445 (93%), Gaps = 8/445 (1%)
Strand = Plus / Plus
Query: 4 cacatcaatggaaatttggagggaggaagtcttcggtccagtcctgtgtgttaaagaatt 63
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 11 cacatcaatggaaatctggagggaggaagtctttggtccagtcctgtgtgttaaagaatt 70
Query: 64 tagcactgaagatgaagccattgaactggccaatgatacacagtatggtttagctggtgc 123
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct: 71 tagcactgaagatgaagccattgaactggccaacgatacacagtatggtttggctggtgc 130
Query: 124 tgtaatttctggtgatcgtgagcgctgccagagattatctgaggagattgatgctggaat 183
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 131 tgtaatttctggtgatcgtgagcgctgccagagattatctgaggagatcgatgctggatg 190
Query: 184 tatctgggtaaactgctcacagccctgcttctgccaggctccctggggcggtaacaagcg 243
||||||||||||||||||||| |||||||||||||| ||||||||||| || ||||||||
Sbjct: 191 tatctgggtaaactgctcacaaccctgcttctgccaagctccctggggtgggaacaagcg 250
Query: 244 tagtggatttggacgtgagcttggagaagggggcattgataactacctgagcgtcaagca 303
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 cagtggatttggacgtgagcttggagaagggggcattgataactacctgagcgtcaagca 310
Query: 304 agtcacggagtacatctctgatgagccgtggggatggtatcgatccccctccaagctgta 363
||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||||||
Sbjct: 311 agtcacggagtacatctctgatgagccgtggggttggtaccaatccccctccaagctgta 370
Query: 364 aac-------tggcatgaaattttgtttgttccattagaataaatatatc-tcgatgcta 415
||| ||||| |||| |||| |||| |||||||||||||| ||| | ||||| |
Sbjct: 371 aacgagaaaatggcacgaaaacttgtctgtttcattagaataaataaatcttggatgcca 430
Query: 416 tacagaacgaacccgtgtatcaaat 440
|||||||||||||||||||||||||
Sbjct: 431 tacagaacgaacccgtgtatcaaat 455
>gb|CB928935.1|CB928935 ABA1_38_H01.b1_A012 Abscisic acid-treated seedlings Sorghum bicolor
cDNA clone ABA1_38_H01_A012 3', mRNA sequence
Length = 565
Score = 628 bits (317), Expect = e-178
Identities = 451/495 (91%), Gaps = 8/495 (1%)
Strand = Plus / Plus
Query: 6 catcaatggaaatttggagggaggaagtcttcggtccagtcctgtgtgttaaagaattta 65
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 1 catcaatggaaatctggagggaggaagtctttggtccagtcctgtgtgttaaagaattta 60
Query: 66 gcactgaagatgaagccattgaactggccaatgatacacagtatggtttagctggtgctg 125
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct: 61 gcactgaagatgaagccattgaactggccaacgatacacagtatggtttggctggtgctg 120
Query: 126 taatttctggtgatcgtgagcgctgccagagattatctgaggagattgatgctggaatta 185
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct: 121 taatttctggtgatcgtgagcgctgccagagattatctgaggagatagatgctggatgta 180
Query: 186 tctgggtaaactgctcacagccctgcttctgccaggctccctggggcggtaacaagcgta 245
||||||||||||||||||| |||||||||||||| ||||||||||| || |||||||| |
Sbjct: 181 tctgggtaaactgctcacaaccctgcttctgccaagctccctggggtgggaacaagcgca 240
Query: 246 gtggatttggacgtgagcttggagaagggggcattgataactacctgagcgtcaagcaag 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gtggatttggacgtgagcttggagaagggggcattgataactacctgagcgtcaagcaag 300
Query: 306 tcacggagtacatctctgatgagccgtggggatggtatcgatccccctccaagctgtaaa 365
||||||||||||||||||||||||||||||| ||||| | ||||||||||||||||||||
Sbjct: 301 tcacggagtacatctctgatgagccgtggggttggtaccaatccccctccaagctgtaaa 360
Query: 366 c-------tggcatgaaattttgtttgttccattagaataaatatatc-tcgatgctata 417
| ||||| |||| || | |||| |||||||||||||| ||| | ||||| |||
Sbjct: 361 cgagaaaatggcacgaaaacttctctgtttcattagaataaataaatcttggatgccata 420
Query: 418 cagaacgaacccgtgtatcaaatggagtatgacattgtgaaaaaggcacatcagcggaac 477
||||||||||||||||||||||| || |||| | ||||| ||||||||| ||||||
Sbjct: 421 cagaacgaacccgtgtatcaaatcgaacatgagacactgaaagaggcacatctgcggaat 480
Query: 478 aaatgtcagagttga 492
||| ||||||||||
Sbjct: 481 aaagatcagagttga 495
>gb|CF482017.1|CF482017 POL1_76_C05.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_76_C05_A002 3', mRNA sequence
Length = 591
Score = 624 bits (315), Expect = e-177
Identities = 413/445 (92%), Gaps = 8/445 (1%)
Strand = Plus / Plus
Query: 4 cacatcaatggaaatttggagggaggaagtcttcggtccagtcctgtgtgttaaagaatt 63
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 73 cacatcaatggaaatctggagggaggaagtctttggtccagtcctgtgtgttaaagaatt 132
Query: 64 tagcactgaagatgaagccattgaactggccaatgatacacagtatggtttagctggtgc 123
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct: 133 tagcactgaagatgaagccattgaactggccaacgatacacagtatggtttggctggtgc 192
Query: 124 tgtaatttctggtgatcgtgagcgctgccagagattatctgaggagattgatgctggaat 183
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 193 tgtaatttctggtgatcgtgagcgctgccagagattatctgaggagatcgatgctggatg 252
Query: 184 tatctgggtaaactgctcacagccctgcttctgccaggctccctggggcggtaacaagcg 243
|||||||||||||||||| || |||||||||||||| ||||||||||| || ||||||||
Sbjct: 253 tatctgggtaaactgctctcaaccctgcttctgccaagctccctggggtgggaacaagcg 312
Query: 244 tagtggatttggacgtgagcttggagaagggggcattgataactacctgagcgtcaagca 303
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 cagtggatttggacgtgagcttggagaagggggcattgataactacctgagcgtcaagca 372
Query: 304 agtcacggagtacatctctgatgagccgtggggatggtatcgatccccctccaagctgta 363
||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||||||
Sbjct: 373 agtcacggagtacatctctgatgagccgtggggttggtaccaatccccctccaagctgta 432
Query: 364 aac-------tggcatgaaattttgtttgttccattagaataaatatatc-tcgatgcta 415
||| ||||| |||| |||| |||| |||||||||||||| ||| | ||||| |
Sbjct: 433 aacgagaaaatggcacgaaaacttgtctgtttcattagaataaataaatcttggatgcca 492
Query: 416 tacagaacgaacccgtgtatcaaat 440
|||||||||||||||||||||||||
Sbjct: 493 tacagaacgaacccgtgtatcaaat 517
>gb|BE355151.1|BE355151 DG1_113_D02.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 646
Score = 620 bits (313), Expect = e-176
Identities = 408/439 (92%), Gaps = 8/439 (1%)
Strand = Plus / Plus
Query: 4 cacatcaatggaaatttggagggaggaagtcttcggtccagtcctgtgtgttaaagaatt 63
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 172 cacatcaatggaaatctggagggaggaagtctttggtccagtcctgtgtgttaaagaatt 231
Query: 64 tagcactgaagatgaagccattgaactggccaatgatacacagtatggtttagctggtgc 123
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct: 232 tagcactgaagatgaagccattgaactggccaacgatacacagtatggtttggctggtgc 291
Query: 124 tgtaatttctggtgatcgtgagcgctgccagagattatctgaggagattgatgctggaat 183
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 292 tgtaatttctggtgatcgtgagcgctgccagagattatctgaggagatcgatgctggatg 351
Query: 184 tatctgggtaaactgctcacagccctgcttctgccaggctccctggggcggtaacaagcg 243
||||||||||||||||||||| |||||||||||||| ||||||||||| || ||||||||
Sbjct: 352 tatctgggtaaactgctcacaaccctgcttctgccaagctccctggggtgggaacaagcg 411
Query: 244 tagtggatttggacgtgagcttggagaagggggcattgataactacctgagcgtcaagca 303
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 cagtggatttggacgtgagcttggagaagggggcattgataactacctgagcgtcaagca 471
Query: 304 agtcacggagtacatctctgatgagccgtggggatggtatcgatccccctccaagctgta 363
||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||||||
Sbjct: 472 agtcacggagtacatctctgatgagccgtggggttggtaccaatccccctccaagctgta 531
Query: 364 aac-------tggcatgaaattttgtttgttccattagaataaatatatc-tcgatgcta 415
||| ||||| |||| |||| |||| |||||||||||||| ||| | ||||| |
Sbjct: 532 aacgagaaaatggcacgaaaacttgtctgtttcattagaataaataaatcttggatgcca 591
Query: 416 tacagaacgaacccgtgta 434
|||||||||||||||||||
Sbjct: 592 tacagaacgaacccgtgta 610
>gb|BG356536.1|BG356536 EM1_23_F09.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 484
Score = 618 bits (312), Expect = e-175
Identities = 407/438 (92%), Gaps = 8/438 (1%)
Strand = Plus / Plus
Query: 4 cacatcaatggaaatttggagggaggaagtcttcggtccagtcctgtgtgttaaagaatt 63
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 10 cacatcaatggaaatctggagggaggaagtctttggtccagtcctgtgtgttaaagaatt 69
Query: 64 tagcactgaagatgaagccattgaactggccaatgatacacagtatggtttagctggtgc 123
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct: 70 tagcactgaagatgaagccattgaactggccaacgatacacagtatggtttggctggtgc 129
Query: 124 tgtaatttctggtgatcgtgagcgctgccagagattatctgaggagattgatgctggaat 183
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 130 tgtaatttctggtgatcgtgagcgctgccagagattatctgaggagatcgatgctggatg 189
Query: 184 tatctgggtaaactgctcacagccctgcttctgccaggctccctggggcggtaacaagcg 243
||||||||||||||||||||| |||||||||||||| ||||||||||| || ||||||||
Sbjct: 190 tatctgggtaaactgctcacaaccctgcttctgccaagctccctggggtgggaacaagcg 249
Query: 244 tagtggatttggacgtgagcttggagaagggggcattgataactacctgagcgtcaagca 303
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 cagtggatttggacgtgagcttggagaagggggcattgataactacctgagcgtcaagca 309
Query: 304 agtcacggagtacatctctgatgagccgtggggatggtatcgatccccctccaagctgta 363
||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||||||
Sbjct: 310 agtcacggagtacatctctgatgagccgtggggttggtaccaatccccctccaagctgta 369
Query: 364 aac-------tggcatgaaattttgtttgttccattagaataaatatatc-tcgatgcta 415
||| ||||| |||| |||| |||| |||||||||||||| ||| | ||||| |
Sbjct: 370 aacgagaaaatggcacgaaaacttgtctgtttcattagaataaataaatcttggatgcca 429
Query: 416 tacagaacgaacccgtgt 433
||||||||||||||||||
Sbjct: 430 tacagaacgaacccgtgt 447
>gb|BG463356.1|BG463356 EM1_48_E07.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 680
Score = 618 bits (312), Expect = e-175
Identities = 407/438 (92%), Gaps = 8/438 (1%)
Strand = Plus / Plus
Query: 4 cacatcaatggaaatttggagggaggaagtcttcggtccagtcctgtgtgttaaagaatt 63
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 207 cacatcaatggaaatctggagggaggaagtctttggtccagtcctgtgtgttaaagaatt 266
Query: 64 tagcactgaagatgaagccattgaactggccaatgatacacagtatggtttagctggtgc 123
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct: 267 tagcactgaagatgaagccattgaactggccaacgatacacagtatggtttggctggtgc 326
Query: 124 tgtaatttctggtgatcgtgagcgctgccagagattatctgaggagattgatgctggaat 183
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 327 tgtaatttctggtgatcgtgagcgctgccagagattatctgaggagatcgatgctggatg 386
Query: 184 tatctgggtaaactgctcacagccctgcttctgccaggctccctggggcggtaacaagcg 243
||||||||||||||||||||| |||||||||||||| ||||||||||| || ||||||||
Sbjct: 387 tatctgggtaaactgctcacaaccctgcttctgccaagctccctggggtgggaacaagcg 446
Query: 244 tagtggatttggacgtgagcttggagaagggggcattgataactacctgagcgtcaagca 303
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 cagtggatttggacgtgagcttggagaagggggcattgataactacctgagcgtcaagca 506
Query: 304 agtcacggagtacatctctgatgagccgtggggatggtatcgatccccctccaagctgta 363
||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||||||
Sbjct: 507 agtcacggagtacatctctgatgagccgtggggttggtaccaatccccctccaagctgta 566
Query: 364 aac-------tggcatgaaattttgtttgttccattagaataaatatatc-tcgatgcta 415
||| ||||| |||| |||| |||| |||||||||||||| ||| | ||||| |
Sbjct: 567 aacgagaaaatggcacgaaaacttgtctgtttcattagaataaataaatcttggatgcca 626
Query: 416 tacagaacgaacccgtgt 433
||||||||||||||||||
Sbjct: 627 tacagaacgaacccgtgt 644
>gb|BF421493.1|BF421493 FM1_8_D10.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 557
Score = 617 bits (311), Expect = e-175
Identities = 412/445 (92%), Gaps = 8/445 (1%)
Strand = Plus / Plus
Query: 4 cacatcaatggaaatttggagggaggaagtcttcggtccagtcctgtgtgttaaagaatt 63
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 73 cacatcaatggaaatctggagggaggaagtctttggtccagtcctgtgtgttaaagaatt 132
Query: 64 tagcactgaagatgaagccattgaactggccaatgatacacagtatggtttagctggtgc 123
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct: 133 tagcactgaagatgaagccattgaactggccaacgatacacagtatggtttggctggtgc 192
Query: 124 tgtaatttctggtgatcgtgagcgctgccagagattatctgaggagattgatgctggaat 183
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 193 tgtaatttctggtgatcgtgagcgctgccagagattatctgaggagatcgatgctggatg 252
Query: 184 tatctgggtaaactgctcacagccctgcttctgccaggctccctggggcggtaacaagcg 243
||||||||||||||||||||| ||||||||| ||| ||||||||||| || ||||||||
Sbjct: 253 tatctgggtaaactgctcacaaccctgcttcgtccaagctccctggggtgggaacaagcg 312
Query: 244 tagtggatttggacgtgagcttggagaagggggcattgataactacctgagcgtcaagca 303
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 cagtggatttggacgtgagcttggagaagggggcattgataactacctgagcgtcaagca 372
Query: 304 agtcacggagtacatctctgatgagccgtggggatggtatcgatccccctccaagctgta 363
||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||||||
Sbjct: 373 agtcacggagtacatctctgatgagccgtggggttggtaccaatccccctccaagctgta 432
Query: 364 aac-------tggcatgaaattttgtttgttccattagaataaatatatc-tcgatgcta 415
||| ||||| |||| |||| |||| |||||||||||||| ||| | ||||| |
Sbjct: 433 aacgagaaaatggcacgaaaacttgtctgtttcattagaataaataaatcttggatgcca 492
Query: 416 tacagaacgaacccgtgtatcaaat 440
|||||||||||||||||||||||||
Sbjct: 493 tacagaacgaacccgtgtatcaaat 517
>gb|BF421116.1|BF421116 FM1_6_E11.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 558
Score = 609 bits (307), Expect = e-172
Identities = 411/445 (92%), Gaps = 8/445 (1%)
Strand = Plus / Plus
Query: 4 cacatcaatggaaatttggagggaggaagtcttcggtccagtcctgtgtgttaaagaatt 63
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 78 cacatcaatggaaatctggagggaggaagtctttggtccagtcctgtgtgttaaagaatt 137
Query: 64 tagcactgaagatgaagccattgaactggccaatgatacacagtatggtttagctggtgc 123
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct: 138 tagcactgaagatgaagccattgaactggccaacgatacacagtatggtttggctggtgc 197
Query: 124 tgtaatttctggtgatcgtgagcgctgccagagattatctgaggagattgatgctggaat 183
|||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct: 198 tgtaatttctggtgatcgtgagcgctgccagagattatatgaggagatcgatgctggatg 257
Query: 184 tatctgggtaaactgctcacagccctgcttctgccaggctccctggggcggtaacaagcg 243
|||||||||||| |||||||| |||||||||||||| ||||||||||| || ||||||||
Sbjct: 258 tatctgggtaaagtgctcacaaccctgcttctgccaagctccctggggtgggaacaagcg 317
Query: 244 tagtggatttggacgtgagcttggagaagggggcattgataactacctgagcgtcaagca 303
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 cagtggatttggacgtgagcttggagaagggggcattgataactacctgagcgtcaagca 377
Query: 304 agtcacggagtacatctctgatgagccgtggggatggtatcgatccccctccaagctgta 363
||||||||||||||||| ||||||||||||||| ||||| | ||||||||||||||||||
Sbjct: 378 agtcacggagtacatctatgatgagccgtggggttggtaccaatccccctccaagctgta 437
Query: 364 aac-------tggcatgaaattttgtttgttccattagaataaatatatc-tcgatgcta 415
||| ||||| |||| |||| |||| |||||||||||||| ||| | ||||| |
Sbjct: 438 aacgagaaaatggcacgaaaacttgtctgtttcattagaataaataaatcttggatgcca 497
Query: 416 tacagaacgaacccgtgtatcaaat 440
|||||||||||||||||||||||||
Sbjct: 498 tacagaacgaacccgtgtatcaaat 522
>gb|CB924928.1|CB924928 ABA1_29_B08.b1_A012 Abscisic acid-treated seedlings Sorghum bicolor
cDNA clone ABA1_29_B08_A012 3', mRNA sequence
Length = 573
Score = 609 bits (307), Expect = e-172
Identities = 450/497 (90%), Gaps = 8/497 (1%)
Strand = Plus / Plus
Query: 4 cacatcaatggaaatttggagggaggaagtcttcggtccagtcctgtgtgttaaagaatt 63
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 68 cacatcaatggaaatctggagggaggaagtctttggtccagtcctgtgtgttaaagaatt 127
Query: 64 tagcactgaagatgaagccattgaactggccaatgatacacagtatggtttagctggtgc 123
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct: 128 tagcactgaagatgaagccattgaactggccaacgatacacagtatggtttggctggtgc 187
Query: 124 tgtaatttctggtgatcgtgagcgctgccagagattatctgaggagattgatgctggaat 183
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 188 tgtaatttctggtgatcgtgagcgctgccagagattatctgaggagatagatgctggatg 247
Query: 184 tatctgggtaaactgctcacagccctgcttctgccaggctccctggggcggtaacaagcg 243
||| ||||||||||||||||| |||||||| ||||| ||||||||||| || ||||||||
Sbjct: 248 tatttgggtaaactgctcacaaccctgcttttgccaagctccctggggtgggaacaagcg 307
Query: 244 tagtggatttggacgtgagcttggagaagggggcattgataactacctgagcgtcaagca 303
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 cagtggatttggacgtgagcttggagaagggggcattgataactacctgagcgtcaagca 367
Query: 304 agtcacggagtacatctctgatgagccgtggggatggtatcgatccccctccaagctgta 363
||||||||||||||||| ||||||||||||||| ||||| | ||||||||||||||||||
Sbjct: 368 agtcacggagtacatctttgatgagccgtggggttggtaccaatccccctccaagctgta 427
Query: 364 aac-------tggcatgaaattttgtttgttccattagaataaatatatc-tcgatgcta 415
||| ||||| |||| || | |||| |||||||||||||| ||| | ||||| |
Sbjct: 428 aacgagaaaatggcacgaaaacttctctgtttcattagaataaataaatcttggatgcca 487
Query: 416 tacagaacgaacccgtgtatcaaatggagtatgacattgtgaaaaaggcacatcagcgga 475
||||||||||||||||||||||||| || |||| | ||||| ||||||||| |||||
Sbjct: 488 tacagaacgaacccgtgtatcaaatcgaacatgagacactgaaagaggcacatctgcgga 547
Query: 476 acaaatgtcagagttga 492
| ||| ||||||||||
Sbjct: 548 ataaagatcagagttga 564
>gb|BF421106.1|BF421106 FM1_6_D11.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 624
Score = 601 bits (303), Expect = e-170
Identities = 410/445 (92%), Gaps = 8/445 (1%)
Strand = Plus / Plus
Query: 4 cacatcaatggaaatttggagggaggaagtcttcggtccagtcctgtgtgttaaagaatt 63
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 139 cacatcaatggaaatctggagggaggaagtctttggtccagtcctgtgtgttaaagaatt 198
Query: 64 tagcactgaagatgaagccattgaactggccaatgatacacagtatggtttagctggtgc 123
||||||||||||||||||||||||||||||||| ||||||||||||||||| | ||||||
Sbjct: 199 tagcactgaagatgaagccattgaactggccaacgatacacagtatggtttggatggtgc 258
Query: 124 tgtaatttctggtgatcgtgagcgctgccagagattatctgaggagattgatgctggaat 183
|||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct: 259 tgtaatttctggtgatcgtgagcgctgccagagattatatgaggagatcgatgctggatg 318
Query: 184 tatctgggtaaactgctcacagccctgcttctgccaggctccctggggcggtaacaagcg 243
||||||||||||||||||||| |||||||||||||| ||||| ||||| || ||||||||
Sbjct: 319 tatctgggtaaactgctcacaaccctgcttctgccaagctccgtggggtgggaacaagcg 378
Query: 244 tagtggatttggacgtgagcttggagaagggggcattgataactacctgagcgtcaagca 303
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 cagtggatttggacgtgagcttggagaagggggcattgataactacctgagcgtcaagca 438
Query: 304 agtcacggagtacatctctgatgagccgtggggatggtatcgatccccctccaagctgta 363
||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||||||
Sbjct: 439 agtcacggagtacatctctgatgagccgtggggttggtaccaatccccctccaagctgta 498
Query: 364 aac-------tggcatgaaattttgtttgttccattagaataaatatatc-tcgatgcta 415
||| |||| |||| |||| |||| |||||||||||||| ||| | ||||| |
Sbjct: 499 aacgagaaaagggcacgaaaacttgtctgtttcattagaataaataaatcttggatgcca 558
Query: 416 tacagaacgaacccgtgtatcaaat 440
|||||||||||||||||||||||||
Sbjct: 559 tacagaacgaacccgtgtatcaaat 583
>gb|BF588419.1|BF588419 FM1_36_D09.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 539
Score = 601 bits (303), Expect = e-170
Identities = 431/473 (91%), Gaps = 8/473 (1%)
Strand = Plus / Plus
Query: 28 ggaagtcttcggtccagtcctgtgtgttaaagaatttagcactgaagatgaagccattga 87
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggaagtctttggtccagtcctgtgtgttaaagaatttagcactgaagatgaagccattga 60
Query: 88 actggccaatgatacacagtatggtttagctggtgctgtaatttctggtgatcgtgagcg 147
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 61 actggccaacgatacacagtatggtttggctggtgctgtaatttctggtgatcgtgagcg 120
Query: 148 ctgccagagattatctgaggagattgatgctggaattatctgggtaaactgctcacagcc 207
|||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| ||
Sbjct: 121 ctgccagagattatctgaggagatcgatgctggatgtatctgggtaaactgctcacaacc 180
Query: 208 ctgcttctgccaggctccctggggcggtaacaagcgtagtggatttggacgtgagcttgg 267
|||||||||||| ||||||||||| || |||||||| |||||||||||||||||||||||
Sbjct: 181 ctgcttctgccaagctccctggggtgggaacaagcgcagtggatttggacgtgagcttgg 240
Query: 268 agaagggggcattgataactacctgagcgtcaagcaagtcacggagtacatctctgatga 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 agaagggggcattgataactacctgagcgtcaagcaagtcacggagtacatctctgatga 300
Query: 328 gccgtggggatggtatcgatccccctccaagctgtaaac-------tggcatgaaatttt 380
||||||||| ||||| | ||||||||||||||||||||| ||||| |||| ||
Sbjct: 301 gccgtggggttggtaccaatccccctccaagctgtaaacgagaaaatggcacgaaaactt 360
Query: 381 gtttgttccattagaataaatatatc-tcgatgctatacagaacgaacccgtgtatcaaa 439
|| |||| |||||||||||||| ||| | ||||| |||||||||||||||||||||||||
Sbjct: 361 gtctgtttcattagaataaataaatcttggatgccatacagaacgaacccgtgtatcaaa 420
Query: 440 tggagtatgacattgtgaaaaaggcacatcagcggaacaaatgtcagagttga 492
| || |||| | ||||| ||||||||| |||||| ||| ||||||||||
Sbjct: 421 tcgaacatgagacactgaaagaggcacatctgcggaataaagatcagagttga 473
>gb|BF588427.1|BF588427 FM1_36_E06.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 561
Score = 575 bits (290), Expect = e-162
Identities = 415/456 (91%), Gaps = 8/456 (1%)
Strand = Plus / Plus
Query: 45 tcctgtgtgttaaagaatttagcactgaagatgaagccattgaactggccaatgatacac 104
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 1 tcctgtgtgttaaagaatttagcactgaagatgaagccattgaactggccaacgatacac 60
Query: 105 agtatggtttagctggtgctgtaatttctggtgatcgtgagcgctgccagagattatctg 164
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 agtatggtttggctggtgctgtaatttctggtgatcgtgagcgctgccagagattatctg 120
Query: 165 aggagattgatgctggaattatctgggtaaactgctcacagccctgcttctgccaggctc 224
||||||| ||||||||| ||||||||||||||||||||| |||||||||||||| ||||
Sbjct: 121 aggagatcgatgctggatgtatctgggtaaactgctcacaaccctgcttctgccaagctc 180
Query: 225 cctggggcggtaacaagcgtagtggatttggacgtgagcttggagaagggggcattgata 284
||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 cctggggtgggaacaagcgcagtggatttggacgtgagcttggagaagggggcattgata 240
Query: 285 actacctgagcgtcaagcaagtcacggagtacatctctgatgagccgtggggatggtatc 344
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct: 241 actacctgagcgtcaagcaagtcacggagtacatctctgatgagccgtggggttggtacc 300
Query: 345 gatccccctccaagctgtaaac-------tggcatgaaattttgtttgttccattagaat 397
||||||||||||||||||||| ||||| |||| |||| |||| |||||||||
Sbjct: 301 aatccccctccaagctgtaaacgagaaaatggcacgaaaacttgtctgtttcattagaat 360
Query: 398 aaatatatc-tcgatgctatacagaacgaacccgtgtatcaaatggagtatgacattgtg 456
||||| ||| | ||||| |||||||||||||||||||||||||| || |||| | ||
Sbjct: 361 aaataaatcttggatgccatacagaacgaacccgtgtatcaaatcgaacatgagacactg 420
Query: 457 aaaaaggcacatcagcggaacaaatgtcagagttga 492
||| ||||||||| |||||| ||| ||||||||||
Sbjct: 421 aaagaggcacatctgcggaataaagatcagagttga 456
>gb|BG560788.1|BG560788 RHIZ2_64_G10.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 557
Score = 569 bits (287), Expect = e-161
Identities = 412/453 (90%), Gaps = 8/453 (1%)
Strand = Plus / Plus
Query: 48 tgtgtgttaaagaatttagcactgaagatgaagccattgaactggccaatgatacacagt 107
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 1 tgtgtgttaaagaatttagcactgaagatgaagccattgaactggccaacgatacacagt 60
Query: 108 atggtttagctggtgctgtaatttctggtgatcgtgagcgctgccagagattatctgagg 167
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 atggtttggctggtgctgtaatttctggtgatcgtgagcgctgccagagattatctgagg 120
Query: 168 agattgatgctggaattatctgggtaaactgctcacagccctgcttctgccaggctccct 227
|||| ||||||||| ||||||||||||||||||||| |||||||||||||| |||||||
Sbjct: 121 agatcgatgctggatgtatctgggtaaactgctcacaaccctgcttctgccaagctccct 180
Query: 228 ggggcggtaacaagcgtagtggatttggacgtgagcttggagaagggggcattgataact 287
|||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggggtgggaacaagcgcagtggatttggacgtgagcttggagaagggggcattgataact 240
Query: 288 acctgagcgtcaagcaagtcacggagtacatctctgatgagccgtggggatggtatcgat 347
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | ||
Sbjct: 241 acctgagcgtcaagcaagtcacggagtacatctctgatgagccgtggggttggtaccaat 300
Query: 348 ccccctccaagctgtaaac-------tggcatgaaattttgtttgttccattagaataaa 400
||||||||||||||||||| ||||| |||| |||| |||| ||||||||||||
Sbjct: 301 ccccctccaagctgtaaacgagaaaatggcacgaaaacttgtctgtttcattagaataaa 360
Query: 401 tatatc-tcgatgctatacagaacgaacccgtgtatcaaatggagtatgacattgtgaaa 459
|| ||| | ||||| |||||||||||||||||||||||||| || |||| | |||||
Sbjct: 361 taaatcttggatgccatacagaacgaacccgtgtatcaaatcgaacatgagacactgaaa 420
Query: 460 aaggcacatcagcggaacaaatgtcagagttga 492
||||||||| |||||| ||| ||||||||||
Sbjct: 421 gaggcacatctgcggaataaagatcagagttga 453
>gb|BG558087.1|BG558087 RHIZ2_66_E12.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 542
Score = 565 bits (285), Expect = e-159
Identities = 410/451 (90%), Gaps = 8/451 (1%)
Strand = Plus / Plus
Query: 50 tgtgttaaagaatttagcactgaagatgaagccattgaactggccaatgatacacagtat 109
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 1 tgtgttaaagaatttagcactgaagatgaagccattgaactggccaacgatacacagtat 60
Query: 110 ggtttagctggtgctgtaatttctggtgatcgtgagcgctgccagagattatctgaggag 169
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ggtttggctggtgctgtaatttctggtgatcgtgagcgctgccagagattatctgaggag 120
Query: 170 attgatgctggaattatctgggtaaactgctcacagccctgcttctgccaggctccctgg 229
|| ||||||||| ||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct: 121 atcgatgctggatgtatctgggtaaactgctcacaaccctgcttctgccaagctccctgg 180
Query: 230 ggcggtaacaagcgtagtggatttggacgtgagcttggagaagggggcattgataactac 289
|| || |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggtgggaacaagcgcagtggatttggacgtgagcttggagaagggggcattgataactac 240
Query: 290 ctgagcgtcaagcaagtcacggagtacatctctgatgagccgtggggatggtatcgatcc 349
||||||||||||||||||||||||||||||||||||||||||||||| ||||| | ||||
Sbjct: 241 ctgagcgtcaagcaagtcacggagtacatctctgatgagccgtggggttggtaccaatcc 300
Query: 350 ccctccaagctgtaaac-------tggcatgaaattttgtttgttccattagaataaata 402
||||||||||||||||| ||||| |||| |||| |||| ||||||||||||||
Sbjct: 301 ccctccaagctgtaaacgagaaaatggcacgaaaacttgtctgtttcattagaataaata 360
Query: 403 tatc-tcgatgctatacagaacgaacccgtgtatcaaatggagtatgacattgtgaaaaa 461
||| | ||||| |||||||||||||||||||||||||| || |||| | ||||| |
Sbjct: 361 aatcttggatgccatacagaacgaacccgtgtatcaaatcgaacatgagacactgaaaga 420
Query: 462 ggcacatcagcggaacaaatgtcagagttga 492
|||||||| |||||| ||| ||||||||||
Sbjct: 421 ggcacatctgcggaataaagatcagagttga 451
>gb|BG557719.1|BG557719 EM1_55_H11.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 323
Score = 464 bits (234), Expect = e-129
Identities = 270/282 (95%)
Strand = Plus / Plus
Query: 4 cacatcaatggaaatttggagggaggaagtcttcggtccagtcctgtgtgttaaagaatt 63
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 42 cacatcaatggaaatctggagggaggaagtctttggtccagtcctgtgtgttaaagaatt 101
Query: 64 tagcactgaagatgaagccattgaactggccaatgatacacagtatggtttagctggtgc 123
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct: 102 tagcactgaagatgaagccattgaactggccaacgatacacagtatggtttggctggtgc 161
Query: 124 tgtaatttctggtgatcgtgagcgctgccagagattatctgaggagattgatgctggaat 183
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 162 tgtaatttctggtgatcgtgagcgctgccagagattatctgaggagatcgatgctggatg 221
Query: 184 tatctgggtaaactgctcacagccctgcttctgccaggctccctggggcggtaacaagcg 243
||||||||||||||||||||| |||||||||||||| ||||||||||| || ||||||||
Sbjct: 222 tatctgggtaaactgctcacaaccctgcttctgccaagctccctggggtgggaacaagcg 281
Query: 244 tagtggatttggacgtgagcttggagaagggggcattgataa 285
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 cagtggatttggacgtgagcttggagaagggggcattgataa 323
>gb|U12195.1|SBU12195 Sorghum bicolor clone BADH1 betaine aldehyde dehydrogenase mRNA,
partial cds
Length = 1377
Score = 448 bits (226), Expect = e-124
Identities = 401/447 (89%), Gaps = 18/447 (4%)
Strand = Plus / Plus
Query: 4 cacatcaatggaaatt-tggagggaggaagtcttcggtccagtcctgtgtgttaaagaat 62
|||||||||||||||| ||||||||||| ||||| |||| |||| |||||||||| ||
Sbjct: 873 cacatcaatggaaattctggagggagga-gtctt-ggtc-agtc-tgtgtgttaa-ga-- 925
Query: 63 ttagcactgaagatgaagccattgaactggccaatgatacacagtatggtttagctggtg 122
|||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct: 926 ttagcactgaagatgaagccattgaactggccaaccatacacagtatggtttggctggtg 985
Query: 123 ctgtaatttctggtgatcgtgagcgctgccagagattatctgaggagattgatgctggaa 182
|||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 986 ctgtcctttctggtgatcgtgagcgctgccagagattatctgaggagatcgatgctggat 1045
Query: 183 ttatctgggtaaactgctcacagccctgcttctgccaggctccctggggcggtaacaagc 242
||||||||||||||||||||| |||||||||||||| ||||||||||| || |||||||
Sbjct: 1046 gtatctgggtaaactgctcacaaccctgcttctgccaagctccctggggtgggaacaagc 1105
Query: 243 gtagtggatttggacgtgagcttggagaagggggcattgataactacctgagcgtcaagc 302
| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1106 gcagtgattttggacgtgagcttggagaagggggcattgataactacctgagcgtcaagc 1165
Query: 303 aagtcacggagtacatctctgatgagccgtggggatggtatcgat-ccccctccaagctg 361
|||||||||||||||||||||||||| |||||| ||||| | || ||||||||||||||
Sbjct: 1166 aagtcacggagtacatctctgatgagaagtggggttggtaccaatcccccctccaagctg 1225
Query: 362 taaac-------tggcatgaaattttgtttgttccattagaat-aaatatatc-tcgatg 412
||||| ||||| |||| |||| |||| ||||||||| ||||| ||| | ||||
Sbjct: 1226 taaacgagaaaatggcacgaaaacttgtctgtttcattagaataaaataaatcttggatg 1285
Query: 413 ctatacagaacgaacccgtgtatcaaa 439
| |||||||||||||||||||||||||
Sbjct: 1286 ccatacagaacgaacccgtgtatcaaa 1312
>gb|BG487960.1|BG487960 RHIZ2_61_D10.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 409
Score = 394 bits (199), Expect = e-108
Identities = 333/377 (88%), Gaps = 8/377 (2%)
Strand = Plus / Plus
Query: 100 tacacagtatggtttagctggtgctgtaatttctggtgatcgtgagcgctgccagagatt 159
||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 1 tacacagtatggtttggctggtgctgtaatttttggtgatcgtgagcgctgccagagatt 60
Query: 160 atctgaggagattgatgctggaattatctgggtaaactgctcacagccctgcttctgcca 219
|| ||||||||| ||||||||| ||| ||||||||||||||||| |||||||| |||||
Sbjct: 61 atttgaggagatcgatgctggatgtatttgggtaaactgctcacaaccctgcttttgcca 120
Query: 220 ggctccctggggcggtaacaagcgtagtggatttggacgtgagcttggagaagggggcat 279
||||||||||| || |||||||| |||||||||||||||||||||||| ||||||||||
Sbjct: 121 agctccctggggtgggaacaagcgcagtggatttggacgtgagcttggaaaagggggcat 180
Query: 280 tgataactacctgagcgtcaagcaagtcacggagtacatctctgatgagccgtggggatg 339
||||||||||||||| ||||||||||||||||||||||| | ||||||||||||||| ||
Sbjct: 181 tgataactacctgagggtcaagcaagtcacggagtacatttttgatgagccgtggggttg 240
Query: 340 gtatcgatccccctccaagctgtaaac-------tggcatgaaattttgtttgttccatt 392
||| | ||||||||||||||||||||| |||| |||| ||||||||| ||||
Sbjct: 241 gtaccaatccccctccaagctgtaaacgagaaaatggcccgaaaacttgtttgtttcatt 300
Query: 393 agaataaatatatctcg-atgctatacagaacgaacccgtgtatcaaatggagtatgaca 451
|||||||||| || | | |||| |||||||||||||||||||||||||| || |||| |
Sbjct: 301 agaataaataaattttggatgccatacagaacgaacccgtgtatcaaatcgaacatgaga 360
Query: 452 ttgtgaaaaaggcacat 468
||||||||||||||
Sbjct: 361 cactgaaaaaggcacat 377
>gb|BG559002.1|BG559002 RHIZ2_53_D03.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 321
Score = 339 bits (171), Expect = 2e-091
Identities = 269/301 (89%), Gaps = 8/301 (2%)
Strand = Plus / Plus
Query: 148 ctgccagagattatctgaggagattgatgctggaattatctgggtaaactgctcacagcc 207
|||||||||||||| ||||||||| ||||||||| ||||||||||||||||||||| ||
Sbjct: 1 ctgccagagattatttgaggagatcgatgctggatgtatctgggtaaactgctcacaacc 60
Query: 208 ctgcttctgccaggctccctggggcggtaacaagcgtagtggatttggacgtgagcttgg 267
|||||| ||||| ||||||||||| || |||||||| |||||||||||||||||||||||
Sbjct: 61 ctgcttttgccaagctccctggggtgggaacaagcgcagtggatttggacgtgagcttgg 120
Query: 268 agaagggggcattgataactacctgagcgtcaagcaagtcacggagtacatctctgatga 327
| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 121 aaaagggggcattgataactacctgagcgtcaagcaagtcacggagtacatctttgatga 180
Query: 328 gccgtggggatggtatcgatccccctccaagctgtaaac-------tggcatgaaatttt 380
||||||||| ||||| | ||||||||||||||||||||| |||| |||| ||
Sbjct: 181 gccgtggggttggtaccaatccccctccaagctgtaaacgagaaaatggcccgaaaactt 240
Query: 381 gtttgttccattagaataaatatatc-tcgatgctatacagaacgaacccgtgtatcaaa 439
|| |||| |||||||||||||| ||| | ||||| |||||||||||||||||||||||||
Sbjct: 241 gtctgtttcattagaataaataaatcttggatgccatacagaacgaacccgtgtatcaaa 300
Query: 440 t 440
|
Sbjct: 301 t 301
>gb|CF771940.1|CF771940 DSBF1_26_D06.g9_A010 Drought-stressed before flowering Sorghum
bicolor cDNA clone DSBF1_26_D06_A010 3', mRNA sequence
Length = 317
Score = 317 bits (160), Expect = 6e-085
Identities = 234/258 (90%), Gaps = 8/258 (3%)
Strand = Plus / Plus
Query: 191 gtaaactgctcacagccctgcttctgccaggctccctggggcggtaacaagcgtagtgga 250
|||||||||||||| |||||||||||||| ||||||||||| || |||||||| ||||||
Sbjct: 1 gtaaactgctcacaaccctgcttctgccaagctccctggggtgggaacaagcgcagtgga 60
Query: 251 tttggacgtgagcttggagaagggggcattgataactacctgagcgtcaagcaagtcacg 310
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tttggacgtgagcttggagaagggggcattgataactacctgagcgtcaagcaagtcacg 120
Query: 311 gagtacatctctgatgagccgtggggatggtatcgatccccctccaagctgtaaac---- 366
|||||||||||||||||||||||||| ||||| | |||||||||||||||||||||
Sbjct: 121 gagtacatctctgatgagccgtggggttggtaccaatccccctccaagctgtaaacgaga 180
Query: 367 ---tggcatgaaattttgtttgttccattagaataaatatatc-tcgatgctatacagaa 422
||||| |||| |||| |||| |||||||||||||| ||| | ||||| ||||||||
Sbjct: 181 aaatggcacgaaaacttgtctgtttcattagaataaataaatcttggatgccatacagaa 240
Query: 423 cgaacccgtgtatcaaat 440
||||||||||||||||||
Sbjct: 241 cgaacccgtgtatcaaat 258
>gb|CW377044.1|CW377044 fsbb001f055d03k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f055d03, DNA
sequence
Length = 703
Score = 182 bits (92), Expect = 2e-044
Identities = 101/104 (97%)
Strand = Plus / Plus
Query: 4 cacatcaatggaaatttggagggaggaagtcttcggtccagtcctgtgtgttaaagaatt 63
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 146 cacatcaatggaaatctggagggaggaagtctttggtccagtcctgtgtgttaaagaatt 205
Query: 64 tagcactgaagatgaagccattgaactggccaatgatacacagt 107
||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 206 tagcactgaagatgaagccattgaactggccaacgatacacagt 249
Score = 115 bits (58), Expect = 4e-024
Identities = 61/62 (98%)
Strand = Plus / Plus
Query: 106 gtatggtttagctggtgctgtaatttctggtgatcgtgagcgctgccagagattatctga 165
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 gtatggtttggctggtgctgtaatttctggtgatcgtgagcgctgccagagattatctga 411
Query: 166 gg 167
||
Sbjct: 412 gg 413
Score = 71.9 bits (36), Expect = 6e-011
Identities = 61/68 (89%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 165 aggagattgatgctggaattatctgggtaaactgctcacagccct-gcttctgccaggct 223
||||||| ||||||||| |||||||||||||||||||| |||| |||||||||| |||
Sbjct: 625 aggagatcgatgctggatggatctgggtaaactgctcacaaccctggcttctgccaagct 684
Query: 224 ccctgggg 231
||||||||
Sbjct: 685 ccctgggg 692
>gb|CW377043.1|CW377043 fsbb001f055d03f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f055d03, DNA
sequence
Length = 698
Score = 167 bits (84), Expect = 1e-039
Identities = 99/104 (95%)
Strand = Plus / Minus
Query: 4 cacatcaatggaaatttggagggaggaagtcttcggtccagtcctgtgtgttaaagaatt 63
||||||||||||||| ||||||||||||||||| | |||||||||||||||||||||||
Sbjct: 643 cacatcaatggaaatctggagggaggaagtctttgtcccagtcctgtgtgttaaagaatt 584
Query: 64 tagcactgaagatgaagccattgaactggccaatgatacacagt 107
||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 583 tagcactgaagatgaagccattgaactggccaacgatacacagt 540
Score = 155 bits (78), Expect = 5e-036
Identities = 102/110 (92%)
Strand = Plus / Minus
Query: 165 aggagattgatgctggaattatctgggtaaactgctcacagccctgcttctgccaggctc 224
||||||| ||||||||| ||||||||||||||||||||| |||||||||||||| ||||
Sbjct: 164 aggagatcgatgctggatgtatctgggtaaactgctcacaaccctgcttctgccaagctc 105
Query: 225 cctggggcggtaacaagcgtagtggatttggacgtgagcttggagaaggg 274
||||||| || |||||||| ||||||||||||||||||||||||||||||
Sbjct: 104 cctggggtgggaacaagcgcagtggatttggacgtgagcttggagaaggg 55
Score = 115 bits (58), Expect = 4e-024
Identities = 61/62 (98%)
Strand = Plus / Minus
Query: 106 gtatggtttagctggtgctgtaatttctggtgatcgtgagcgctgccagagattatctga 165
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 gtatggtttggctggtgctgtaatttctggtgatcgtgagcgctgccagagattatctga 378
Query: 166 gg 167
||
Sbjct: 377 gg 376
>gb|BG158652.1|BG158652 RHIZ2_43_D02.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 195
Score = 139 bits (70), Expect = 3e-031
Identities = 138/160 (86%), Gaps = 8/160 (5%)
Strand = Plus / Plus
Query: 289 cctgagcgtcaagcaagtcacggagtacatctctgatgagccgtggggatggtatcgatc 348
|||||||||||||||||||| ||||||||||||||||||||||||||| ||||| | |||
Sbjct: 1 cctgagcgtcaagcaagtcaaggagtacatctctgatgagccgtggggttggtaccaatc 60
Query: 349 cccctccaagctgtaaac-------tggcatgaaattttgtttgttccattagaataaat 401
|||||||||||||||||| ||||| |||| |||| |||| |||||||||||||
Sbjct: 61 cccctccaagctgtaaacgagaaaatggcaagaaaacttgtctgtttcattagaataaat 120
Query: 402 atatc-tcgatgctatacagaacgaacccgtgtatcaaat 440
| ||| | ||||| |||||||| ||||| |||||||||||
Sbjct: 121 aaatcttggatgccatacagaaggaaccggtgtatcaaat 160
>gb|CD222832.1|CD222832 CCC1_24_A06.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_24_A06_A007 3', mRNA sequence
Length = 607
Score = 91.7 bits (46), Expect = 6e-017
Identities = 136/166 (81%)
Strand = Plus / Plus
Query: 177 ctggaattatctgggtaaactgctcacagccctgcttctgccaggctccctggggcggta 236
|||| ||||| ||| |||||||||| || || |||||| ||| ||||| ||||| || |
Sbjct: 184 ctggcattatttggataaactgctcgcaaccgtgcttcgtccaagctccatggggaggga 243
Query: 237 acaagcgtagtggatttggacgtgagcttggagaagggggcattgataactacctgagcg 296
||||||| || || ||||| || ||||| |||||| ||||| ||||||||||| ||| ||
Sbjct: 244 acaagcggagcggttttggtcgggagctcggagaatggggccttgataactacatgaccg 303
Query: 297 tcaagcaagtcacggagtacatctctgatgagccgtggggatggta 342
| ||||||||||| |||| ||| ||||| ||||||||||||||
Sbjct: 304 tgaagcaagtcaccaagtattgctcggatgaaccgtggggatggta 349
Score = 56.0 bits (28), Expect = 3e-006
Identities = 94/116 (81%)
Strand = Plus / Plus
Query: 8 tcaatggaaatttggagggaggaagtcttcggtccagtcctgtgtgttaaagaatttagc 67
|||||| |||||||| | ||||||||||| || || ||| | || ||||||||||| ||
Sbjct: 15 tcaatgcaaatttggcgagaggaagtctttggacctgtcatctgcgttaaagaattcagg 74
Query: 68 actgaagatgaagccattgaactggccaatgatacacagtatggtttagctggtgc 123
| || |||||| | ||||| || |||||||| ||||||||||||||||||||
Sbjct: 75 agagagagtgaagctgtggaacttgcaaatgatactcagtatggtttagctggtgc 130
>gb|BG464774.1|BG464774 EM1_34_A03.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 326
Score = 79.8 bits (40), Expect = 2e-013
Identities = 123/151 (81%)
Strand = Plus / Plus
Query: 192 taaactgctcacagccctgcttctgccaggctccctggggcggtaacaagcgtagtggat 251
|||||||||| || || |||||| ||| ||||| ||||| || |||||||| || || |
Sbjct: 80 taaactgctcgcaaccatgcttcgtccaagctccatggggagggaacaagcggagcggtt 139
Query: 252 ttggacgtgagcttggagaagggggcattgataactacctgagcgtcaagcaagtcacgg 311
|||| || ||||| |||||| ||||| ||||||||||| ||| ||| |||||||||||
Sbjct: 140 ttggtcgggagctcggagaatggggccttgataactacatgaccgtgaagcaagtcacca 199
Query: 312 agtacatctctgatgagccgtggggatggta 342
|||| ||| ||||| ||||||||| ||||
Sbjct: 200 agtattgctcggatgaaccgtgggganggta 230
>gb|U12196.1|SBU12196 Sorghum bicolor clone BADH15 betaine aldehyde dehydrogenase mRNA,
complete cds
Length = 1799
Score = 63.9 bits (32), Expect = 1e-008
Identities = 77/92 (83%)
Strand = Plus / Plus
Query: 251 tttggacgtgagcttggagaagggggcattgataactacctgagcgtcaagcaagtcacg 310
||||| || ||||| |||||| ||||| ||||||||||| ||| ||| |||||||||||
Sbjct: 1462 tttggtcgggagctcggagaatggggccttgataactacatgaccgtgaagcaagtcacc 1521
Query: 311 gagtacatctctgatgagccgtggggatggta 342
|||| ||| ||||| ||||||||||||||
Sbjct: 1522 aagtattgctcggatgaaccgtggggatggta 1553
Score = 56.0 bits (28), Expect = 3e-006
Identities = 94/116 (81%)
Strand = Plus / Plus
Query: 8 tcaatggaaatttggagggaggaagtcttcggtccagtcctgtgtgttaaagaatttagc 67
|||||| |||||||| | ||||||||||| || || ||| | || ||||||||||| ||
Sbjct: 1228 tcaatgcaaatttggcgagaggaagtctttggacctgtcatctgcgttaaagaattcagg 1287
Query: 68 actgaagatgaagccattgaactggccaatgatacacagtatggtttagctggtgc 123
| || |||||| | ||||| || |||||||| ||||||||||||||||||||
Sbjct: 1288 agagagagtgaagctgtggaacttgcaaatgatactcagtatggtttagctggtgc 1343
>gb|CW294731.1|CW294731 104_775_11415340_116_36233_004 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11415340, DNA
sequence
Length = 700
Score = 52.0 bits (26), Expect = 5e-005
Identities = 59/70 (84%)
Strand = Plus / Plus
Query: 273 ggggcattgataactacctgagcgtcaagcaagtcacggagtacatctctgatgagccgt 332
||||| ||||||||||| ||| ||| ||||||||||| |||| ||| ||||| ||||
Sbjct: 23 ggggccttgataactacatgaccgtgaagcaagtcaccaagtattgctcggatgaaccgt 82
Query: 333 ggggatggta 342
||||||||||
Sbjct: 83 ggggatggta 92
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 129,180
Number of Sequences: 832831
Number of extensions: 129180
Number of successful extensions: 33464
Number of sequences better than 0.5: 34
Number of HSP's better than 0.5 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 33364
Number of HSP's gapped (non-prelim): 72
length of query: 534
length of database: 491,359,669
effective HSP length: 19
effective length of query: 515
effective length of database: 475,535,880
effective search space: 244900978200
effective search space used: 244900978200
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)